Query 019958
Match_columns 333
No_of_seqs 209 out of 1309
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:53:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019958.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019958hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0472 Rfe UDP-N-acetylmuramy 100.0 8.2E-45 1.8E-49 349.8 23.5 232 79-332 8-240 (319)
2 cd06855 GT_GPT_euk UDP-GlcNAc: 100.0 1.7E-44 3.7E-49 342.4 23.2 234 91-331 1-239 (283)
3 cd06851 GT_GPT_like This famil 100.0 2.7E-44 5.9E-49 330.6 22.8 207 105-332 2-209 (223)
4 PRK00108 mraY phospho-N-acetyl 100.0 1.4E-43 3.1E-48 344.6 28.4 244 72-329 7-270 (344)
5 TIGR02380 ECA_wecA undecapreny 100.0 1.4E-43 3.1E-48 344.6 25.8 222 80-329 4-231 (346)
6 PRK15119 undecaprenyl-phosphat 100.0 8.3E-43 1.8E-47 341.3 27.2 221 80-328 10-235 (365)
7 PRK14655 mraY phospho-N-acetyl 100.0 1E-42 2.2E-47 332.5 24.5 214 81-330 2-230 (304)
8 cd06854 GT_WbpL_WbcO_like The 100.0 1.4E-42 3E-47 324.9 21.2 197 108-330 2-199 (253)
9 PRK14654 mraY phospho-N-acetyl 100.0 3.8E-42 8.3E-47 328.8 24.5 215 82-330 4-228 (302)
10 cd06856 GT_GPT_archaea UDP-Glc 100.0 6.7E-42 1.5E-46 324.4 22.3 200 105-332 2-201 (280)
11 cd06912 GT_MraY_like This subf 100.0 1.3E-41 2.9E-46 306.4 20.3 190 111-323 1-192 (193)
12 TIGR00445 mraY phospho-N-acety 100.0 2.1E-41 4.6E-46 326.6 22.4 228 88-329 2-247 (321)
13 KOG2788 Glycosyltransferase [C 100.0 1.2E-42 2.6E-47 327.0 4.8 257 72-332 5-283 (418)
14 cd06499 GT_MraY-like Glycosylt 100.0 1.1E-39 2.3E-44 292.2 19.5 181 119-324 1-185 (185)
15 cd06853 GT_WecA_like This subf 100.0 2.8E-39 6.1E-44 301.8 20.3 195 115-330 3-197 (249)
16 cd06852 GT_MraY Phospho-N-acet 100.0 4.4E-38 9.4E-43 298.5 20.6 197 114-329 5-210 (280)
17 PF00953 Glycos_transf_4: Glyc 100.0 6.1E-35 1.3E-39 255.5 16.9 155 157-328 4-159 (159)
18 PF10555 MraY_sig1: Phospho-N- 86.7 0.093 2E-06 27.0 -1.2 11 118-128 2-12 (13)
19 PRK12876 ubiA prenyltransferas 50.5 41 0.00088 32.7 6.1 21 102-122 68-88 (300)
20 COG0382 UbiA 4-hydroxybenzoate 43.3 47 0.001 31.5 5.3 21 103-123 69-89 (289)
21 PF06781 UPF0233: Uncharacteri 36.9 1.9E+02 0.0042 22.9 6.9 42 46-87 35-83 (87)
22 COG5000 NtrY Signal transducti 36.4 96 0.0021 33.3 6.6 74 42-120 8-82 (712)
23 PRK12888 ubiA prenyltransferas 32.9 87 0.0019 29.9 5.4 21 102-122 60-80 (284)
24 PF11391 DUF2798: Protein of u 32.2 1.9E+02 0.0042 20.8 7.3 45 56-100 13-58 (60)
25 PRK12895 ubiA prenyltransferas 31.1 71 0.0015 30.7 4.4 22 102-123 58-79 (286)
26 KOG3462 Predicted membrane pro 30.6 2.2E+02 0.0047 23.0 6.2 53 34-87 32-93 (105)
27 PRK13106 ubiA prenyltransferas 29.6 96 0.0021 29.9 5.1 22 102-123 70-91 (300)
28 PRK12886 ubiA prenyltransferas 29.0 94 0.002 29.8 4.8 22 102-123 63-84 (291)
29 PF05478 Prominin: Prominin; 26.9 5E+02 0.011 28.6 10.5 37 98-136 434-470 (806)
30 PRK12873 ubiA prenyltransferas 26.4 1.1E+02 0.0024 29.6 4.8 21 103-123 66-86 (294)
31 PHA00726 hypothetical protein 25.6 1.4E+02 0.0031 23.6 4.3 22 117-138 36-57 (89)
32 PF05552 TM_helix: Conserved T 24.9 2.5E+02 0.0053 19.6 5.3 32 72-103 17-48 (53)
33 PRK00159 putative septation in 24.5 3.6E+02 0.0079 21.4 7.0 17 71-87 67-83 (87)
34 TIGR01475 ubiA_other putative 23.3 1.2E+02 0.0027 28.5 4.5 20 104-123 59-78 (282)
35 PF02673 BacA: Bacitracin resi 22.6 4E+02 0.0086 25.2 7.7 60 44-103 182-245 (259)
36 COG3742 Uncharacterized protei 22.3 45 0.00097 28.3 1.1 28 291-318 78-108 (131)
37 TIGR01473 cyoE_ctaB protoheme 22.3 2E+02 0.0044 27.1 5.7 22 102-123 56-77 (280)
38 PF14163 SieB: Superinfection 21.8 3E+02 0.0064 23.4 6.2 55 43-97 5-59 (151)
39 PRK12874 ubiA prenyltransferas 21.1 7.3E+02 0.016 23.6 16.5 21 102-122 68-88 (291)
40 PF11947 DUF3464: Protein of u 20.7 3.6E+02 0.0077 23.7 6.4 37 42-79 70-106 (153)
41 PRK12869 ubiA protoheme IX far 20.2 1.6E+02 0.0034 27.9 4.6 22 102-123 57-78 (279)
No 1
>COG0472 Rfe UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=8.2e-45 Score=349.82 Aligned_cols=232 Identities=21% Similarity=0.327 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccCcccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHH
Q 019958 79 LSLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAAL 158 (333)
Q Consensus 79 ~~l~af~lt~~~~p~~~~~~~r~~l~g~di~k~~~r~h~~~~P~~GGl~i~~~~li~~~l~~~~~~~~~~~~~~~~~~~l 158 (333)
..++++++|++++|.++++++|.|..| ++++++|+|+++|||+||++++.+++++..+.... .++.+. ...+
T Consensus 8 ~~i~a~~~s~~~~p~~~~~~~~~~~~~--~~~~~~k~H~~~tP~mGGl~I~~~~~~~~~l~~~~-~~~~~~-----~~~l 79 (319)
T COG0472 8 ALIISFVISLILTPILIKFLRKLGLGD--IPEDGPKSHKKGTPTMGGLAILLSILLASLLAANL-LTNPYV-----WLVL 79 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccc--CCCccccccCCCCCCcchHHHHHHHHHHHHHHHHh-ccchHH-----HHHH
Confidence 667789999999999999999999864 33344455999999999999999998887654332 122222 2346
Q ss_pred HHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhCCeEEEecCCcccccCccccchh-hHHHHHHHHHHHHhhhH
Q 019958 159 ASICFMLLLGFVDDVLDVPWRVKLILPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLG-WIYKLYMFLLAVFCTNS 237 (333)
Q Consensus 159 ~~~~~~~liG~~DD~~~l~~~~Kl~~q~~aal~l~~~~~g~~~i~ip~~l~p~~g~~~i~lg-~l~~~l~~l~iv~~~Na 237 (333)
.+...++++|++||+++++++.|++.|...+.++.. ..+.... .....|+........+ +++++++.+++++++||
T Consensus 80 ~~~~~~~~iG~lDD~~~l~~~~r~l~~~~~a~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ivg~sNA 156 (319)
T COG0472 80 LGLLGFGLIGFLDDRLKLSPKIRGLIQKLKALLLII-ALGELPI--KFLDIPLGIPFFKLPGPLLFILFAVFAIVGASNA 156 (319)
T ss_pred HHHHHHHHHHHHHhHHHhhHHhhhHHHHHHHHHHHH-HHHHHHH--HhccCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778999999999999999999999999985322 2221000 1011121110112234 89999999999999999
Q ss_pred hhhhcCcchhhHHHHHHHHHHHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHhhccccCCccccCchhHHHHH
Q 019958 238 INIHAGLNGLEVGQTVVIASAILLHNIMQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAG 317 (333)
Q Consensus 238 iNl~DGiDGLa~G~~~i~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~gallgFL~fN~~PAkIFmGDtGS~~lG 317 (333)
+|++||+||||+|++.+++.+++++++.+. +.....++++++|+++|||+||+||||||||||||+++|
T Consensus 157 vNl~DGlDGLa~g~~~i~~~~~~~i~~~~~-----------~~~~~~~~~al~ga~LGFL~~N~~PAkIFmGDtGSl~LG 225 (319)
T COG0472 157 VNLTDGLDGLAAGLSAIALLALALIALLQG-----------LGELALICAALAGACLGFLWFNFYPAKIFMGDTGSLALG 225 (319)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHhc-----------chhHHHHHHHHHHHHHHHHHhcCChhhhcCCchhhHHHH
Confidence 999999999999999999999998887542 233457889999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccc
Q 019958 318 MTMAVVGILGHFRYV 332 (333)
Q Consensus 318 ~~la~i~I~~~~~~~ 332 (333)
+++|+++++++.+.+
T Consensus 226 ~~la~iail~~~~~~ 240 (319)
T COG0472 226 AALAAIALLLKQEIL 240 (319)
T ss_pred HHHHHHHHHHhCchh
Confidence 999999999998764
No 2
>cd06855 GT_GPT_euk UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT) catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-glycosylation. GPT activity has been identified in all eukaryotic cells examined to date. A series of six conserved motifs designated A through F, ranging in length from 5 to 13 amino acid residues, has been identified in this family. They have been determined to be important for stable expression, substrate binding, or catalytic activities.
Probab=100.00 E-value=1.7e-44 Score=342.38 Aligned_cols=234 Identities=58% Similarity=0.988 Sum_probs=172.9
Q ss_pred HHHHHHHHHHcCccCcccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHhhcccC--cchhHHHHHHHHHHHHHHHHHH
Q 019958 91 IPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNFTA--DSNWLVEYNAALASICFMLLLG 168 (333)
Q Consensus 91 ~p~~~~~~~r~~l~g~di~k~~~r~h~~~~P~~GGl~i~~~~li~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~liG 168 (333)
+|.++++++|+|++|+|.+|+ |+++|||+||++++++++++..+........ +.....++...+.+...++++|
T Consensus 1 ~p~~i~~~~~~~l~~~d~~k~----~~~~vP~~GGlai~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG 76 (283)
T cd06855 1 IPKFGPLFIKAGLYGIDLNKN----GEEKIPESAGLVPGIVFLIVLFLFIPFPFLKDFPHDKLVEYLSALLSICCMTFLG 76 (283)
T ss_pred ChhHHHHHHHCCCcccCCCCC----CCCCCCCcCcHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 388999999999998877665 5689999999999999988765432221000 0000112334566677789999
Q ss_pred HHhhcCCCchhhHHHHHHHHHHHHHHHHhCCe---EEEecCCcccccCccccchhhHHHHHHHHHHHHhhhHhhhhcCcc
Q 019958 169 FVDDVLDVPWRVKLILPSFAALPLLMAYAGHT---SIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLN 245 (333)
Q Consensus 169 ~~DD~~~l~~~~Kl~~q~~aal~l~~~~~g~~---~i~ip~~l~p~~g~~~i~lg~l~~~l~~l~iv~~~NaiNl~DGiD 245 (333)
++||+++++++.|+.+|++++.++.+.+.+.. ...+| ..++.+. .++++|++++++++++++++||+|++||+|
T Consensus 77 ~lDD~~~l~~~~Kl~~q~~aa~~~~~~~~~~~~~~~~~~p--~~~~~~~-~i~l~~l~~~lt~~~iv~~~Na~N~~DGlD 153 (283)
T cd06855 77 FADDVLDLRWRHKLILPTFASLPLLMVYYGNTGITLPIVP--LRPLLGT-LIDLGILYYVYMILLAVFCTNSINIYAGIN 153 (283)
T ss_pred HhhchhccCchHHHHHHHHHHHHHHHHHhcccccceeecc--hhhcccc-cccccHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 99999999999999999999987554333321 11121 1112222 367789999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHhhccccCCccccCchhHHHHHHHHHHHHH
Q 019958 246 GLEVGQTVVIASAILLHNIMQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVVGI 325 (333)
Q Consensus 246 GLa~G~~~i~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~gallgFL~fN~~PAkIFmGDtGS~~lG~~la~i~I 325 (333)
|||+|++++++.+++++++....++......+++.....++++++|+++|||+||||||||||||+||+++|+.+|++++
T Consensus 154 GLa~g~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ga~lGFL~~N~~PAkIFMGD~GSl~LG~~la~~~i 233 (283)
T cd06855 154 GLEVGQSLVIALSILLYNLLELNGSSGSMTLDAHLFSLYLLLPFIAVSLALLYYNWYPSKVFVGDTFTYFAGMVFAVVGI 233 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHhcCCCccceeeechHHHHHHHHHHHHHH
Confidence 99999999999999877654211000000001223345678899999999999999999999999999999999999999
Q ss_pred Hhcccc
Q 019958 326 LGHFRY 331 (333)
Q Consensus 326 ~~~~~~ 331 (333)
.++.+.
T Consensus 234 ~~~~~~ 239 (283)
T cd06855 234 LGHFSK 239 (283)
T ss_pred HHhhHH
Confidence 988654
No 3
>cd06851 GT_GPT_like This family includes eukaryotic UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT) and archaeal GPT-like glycosyltransferases. Eukaryotic GPT catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-linked glycosylation. GPT activity has been identified in all eukaryotic cells examined to date. Evidence for the existence of the N-glycosylation pathway in archaea has emerged and genes responsible for the pathway have been identified. A glycosyl transferase gene Mv1751 in M. voltae encodes for the enzyme that carries out the first step in the pathway, the attachment of GlcNAc to a dolichol lipid carrier in the membrane. A lethal mutation in the alg7 (GPT) gene in Saccharomyces cerevisiae was successfully complemented with Mv1751, the archaeal gene, indicating eukaryotic and archaeal enzymes may use the
Probab=100.00 E-value=2.7e-44 Score=330.58 Aligned_cols=207 Identities=33% Similarity=0.445 Sum_probs=159.9
Q ss_pred CcccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHhhcc-cCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHH
Q 019958 105 GYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNF-TADSNWLVEYNAALASICFMLLLGFVDDVLDVPWRVKLI 183 (333)
Q Consensus 105 g~di~k~~~r~h~~~~P~~GGl~i~~~~li~~~l~~~~~~-~~~~~~~~~~~~~l~~~~~~~liG~~DD~~~l~~~~Kl~ 183 (333)
|||+|||++ ++|||+||++++.+++++..++..... ..++....++...+++...++++|++||++++++|.|+.
T Consensus 2 g~d~~k~~~----~~tP~~GGi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~lDD~~~l~~~~Kl~ 77 (223)
T cd06851 2 GKDMNKKGN----VMIPEPGGISILIGFVASEITLIFFPFLSFPHFPISEILAALITSVLGFSVGIIDDRLTMGGWFKPV 77 (223)
T ss_pred CCCCCCCCC----CCCCCcchHHHHHHHHHHHHHHHHccccccccchHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 789999754 699999999999998887655422110 001000112233455666788999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCeEEEecCCcccccCccccchhhHHHHHHHHHHHHhhhHhhhhcCcchhhHHHHHHHHHHHHHHH
Q 019958 184 LPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHN 263 (333)
Q Consensus 184 ~q~~aal~l~~~~~g~~~i~ip~~l~p~~g~~~i~lg~l~~~l~~l~iv~~~NaiNl~DGiDGLa~G~~~i~~~~l~i~~ 263 (333)
+|++++.++.........+. .|+.+. .+++++++++++.+++++++||+|++||+|||++|++++++.++++.+
T Consensus 78 ~q~~~a~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~iv~~~Na~N~~DGiDGLa~g~~~i~~~~l~~~~ 151 (223)
T cd06851 78 ALAFAAAPILLLGAYDSNLD-----FPLFGG-SVKIPSLYLVLVVFMIVITGNAFNSIAGLNGVEAGFTTIISFALAISL 151 (223)
T ss_pred HHHHHHHHHHHHHHhcccee-----eccccc-chhhhHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Confidence 99999987654322222222 234442 467789999999999999999999999999999999999999998776
Q ss_pred HHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHhhccccCCccccCchhHHHHHHHHHHHHHHhccccc
Q 019958 264 IMQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHFRYV 332 (333)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~~~l~gallgFL~fN~~PAkIFmGDtGS~~lG~~la~i~I~~~~~~~ 332 (333)
+... +.....++.+++|+++|||+||||||||||||+||+++|+.+|++++.++.+++
T Consensus 152 ~~~~-----------~~~~~~~~~~l~gallgFL~~N~~PAkIFMGD~GS~~lG~~la~~~i~~~~~~~ 209 (223)
T cd06851 152 LVQQ-----------NYEIGIACLCLAFASLAFLYYNKYPSRIFPGDTGAYMFGATYAVVAILGEVEKI 209 (223)
T ss_pred HHcc-----------chHHHHHHHHHHHHHHHHHHhhcChhheeccchhHHHHHHHHHHHHHHHhhHHH
Confidence 5431 222346788999999999999999999999999999999999999999998753
No 4
>PRK00108 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional
Probab=100.00 E-value=1.4e-43 Score=344.58 Aligned_cols=244 Identities=24% Similarity=0.359 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCcccCCC--CCCCCcccCCCCchHHHHHHHHHHHHHHHhhcccCcch
Q 019958 72 SILINAGLSLAGFFITQKMIPVASRYVLRRNLFGYDINKK--GTPQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSN 149 (333)
Q Consensus 72 ~~l~~~~~~l~af~lt~~~~p~~~~~~~r~~l~g~di~k~--~~r~h~~~~P~~GGl~i~~~~li~~~l~~~~~~~~~~~ 149 (333)
..+..+..++++|++|++++|.++++++|+|+ +++.+++ +.|+|+++|||+||++++.+++++..++. ...+.+
T Consensus 7 ~~~~~~~~~~~af~is~~~~p~~i~~~~~~~~-~~~~~~~~p~~h~h~~~tP~~GGi~i~~~~~~~~~~~~--~~~~~~- 82 (344)
T PRK00108 7 LTFRALLALLTALLISLILGPRFIRFLRKLKF-GQPIREDGPQSHLKKAGTPTMGGILILLAIVISTLLWA--DLSNPY- 82 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCccccccccccCCCCCCCcccHHHHHHHHHHHHHHH--hccchH-
Confidence 34556677788999999999999999999995 7766554 33346899999999999988877765431 111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc--------CCCchhhHHHHHHHHHHHHHHHH--hC--CeEEEecCCcccccCcccc
Q 019958 150 WLVEYNAALASICFMLLLGFVDDV--------LDVPWRVKLILPSFAALPLLMAY--AG--HTSIIIPKPLVPYVGLEIL 217 (333)
Q Consensus 150 ~~~~~~~~l~~~~~~~liG~~DD~--------~~l~~~~Kl~~q~~aal~l~~~~--~g--~~~i~ip~~l~p~~g~~~i 217 (333)
....+.+...++++|++||+ ++++++.|+++|++++.++.... .| .+.+.+ |+.|...+
T Consensus 83 ----~~~~l~~~~~~~~vG~~DD~~~~~~~~~~~l~~~~kl~~q~~aa~~~~~~~~~~g~~~~~~~~-----p~~~~~~i 153 (344)
T PRK00108 83 ----VWLVLLVTLGFGLIGFLDDYLKVVKKNNLGLSARQKLLLQILIALIFALLLYLLGSTSTSLTI-----PFFKDLSL 153 (344)
T ss_pred ----HHHHHHHHHHHHHHHhHHhhHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCceEEe-----cCcccccc
Confidence 22334455667899999999 58999999999999998765321 11 223333 33443235
Q ss_pred chh-hHHHHHHHHHHHHhhhHhhhhcCcchhhHHHHHHHHHHHHHHHHHHhhc---C--CChhhhhhhHHHHHHHHHHHH
Q 019958 218 DLG-WIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNIMQIGA---S--LDPEYKQAHAFSIYLVQPLLA 291 (333)
Q Consensus 218 ~lg-~l~~~l~~l~iv~~~NaiNl~DGiDGLa~G~~~i~~~~l~i~~~~~~~~---~--~~~~~~~~~~~~~~l~~~l~g 291 (333)
+++ |++++++++++++++||+|++||+|||++|++++++.+++++++..... + ..|+..+ +.....++++++|
T Consensus 154 ~lg~~~~~~~t~~~iv~~~Na~N~iDGiDGLa~g~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g 232 (344)
T PRK00108 154 DLGVILYIPFAYFVIVGTSNAVNLTDGLDGLAIGPSVIVFAALGIIAYLQGNAVFANYLHIPYIPG-AGELAIFCAALVG 232 (344)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhccCchhHHHHHHHHHHHHHHHHHHHcCchhhhhhhcccccCC-chHHHHHHHHHHH
Confidence 677 7899999999999999999999999999999999999998876542100 0 0000000 1123466788999
Q ss_pred HHHHHhhccccCCccccCchhHHHHHHHHHHHHHHhcc
Q 019958 292 TSLALFSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHF 329 (333)
Q Consensus 292 allgFL~fN~~PAkIFmGDtGS~~lG~~la~i~I~~~~ 329 (333)
+++|||+||||||||||||+||+++|+.+|++++.++.
T Consensus 233 allGFL~~N~~pAkIFMGD~GS~~LG~~la~~~i~~~~ 270 (344)
T PRK00108 233 ACLGFLWFNAYPAQVFMGDTGSLALGGALAAIAVLLRQ 270 (344)
T ss_pred HHHHHHHhcCCcceEEeechHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999998653
No 5
>TIGR02380 ECA_wecA undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. Members of this family are the WecA enzyme of enterobacterial common antigen biosynthesis, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. This family represents one narrow clade, and closely related sequences outside this clade may represent enzymes that catalyze the same specific reaction, but in the context of different pathways. A His-rich motif in a cytosolic loop of this integral membrane protein, shown critical to enzymatic activity for WecA (see ref ) is variously present or absent in the clade that includes Bacillus subtilis TagO teichoic acid biosynthesis enzyme, which may catalyze the same reaction as WecA.
Probab=100.00 E-value=1.4e-43 Score=344.56 Aligned_cols=222 Identities=18% Similarity=0.241 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCccCcccCCCCCCC-CcccCCCCchHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHH
Q 019958 80 SLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQ-GTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAAL 158 (333)
Q Consensus 80 ~l~af~lt~~~~p~~~~~~~r~~l~g~di~k~~~r~-h~~~~P~~GGl~i~~~~li~~~l~~~~~~~~~~~~~~~~~~~l 158 (333)
++++++++++++|.++++++|+|++ |+||+|| |+++|||+||++++.+++++...+. . ..+. ....+
T Consensus 4 ~~~~~~~s~~~~~~~~~~a~r~~lv----D~P~~Rk~H~~~~P~~GGiai~~~~~~~~~~~~--~-~~~~-----~~~~l 71 (346)
T TIGR02380 4 LIVIFLSSFAFLFLMRKVAKIVGLV----DKPNARKRHQGFIPLVGGISIFLTLCIYLFLHP--A-LIPH-----YSLYL 71 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC----cCCCCCCCCCCCcCCcCcHHHHHHHHHHHHHHh--c-chhH-----HHHHH
Confidence 3467888999999999999999987 6888888 9999999999999988776654321 1 1111 11234
Q ss_pred HHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhCCeEEEecCCcccccCccccchhhHHHHHHHHHHHHhhhHh
Q 019958 159 ASICFMLLLGFVDDVLDVPWRVKLILPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSI 238 (333)
Q Consensus 159 ~~~~~~~liG~~DD~~~l~~~~Kl~~q~~aal~l~~~~~g~~~i~ip~~l~p~~g~~~i~lg~l~~~l~~l~iv~~~Nai 238 (333)
.+...+.++|++||+++++++.|+.+|++++.++.. .++.. +. .+.+.++...++++|++++++++++++.+||+
T Consensus 72 ~~~~li~~iG~~DD~~~Ls~~~rl~~q~~aa~~~~~--~~~~~--i~-~~~~~~~~~~l~l~~~~~~~t~~~iv~~~Na~ 146 (346)
T TIGR02380 72 FCATILVVIGIIDDRFDISVKIRLAIQAAVSIVMIQ--FGNIY--LH-SLGNIFGPKELTLGLFGYIITIFAVIGAINAF 146 (346)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH--Hcccc--hh-hcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 455667899999999999999999999999987643 33222 21 11222333356778999999999999999999
Q ss_pred hhhcCcchhhHHHHHHHHHHHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHhhcccc-----CCccccCchhH
Q 019958 239 NIHAGLNGLEVGQTVVIASAILLHNIMQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWY-----PSSVFVGDTYT 313 (333)
Q Consensus 239 Nl~DGiDGLa~G~~~i~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~gallgFL~fN~~-----PAkIFmGDtGS 313 (333)
|++||+|||++|++++++.++++..+... +.....+++.++|+++|||+|||| ||||||||+||
T Consensus 147 N~iDGiDGLa~g~~~i~~~~l~~~~~~~~-----------~~~~~~~~~~l~ga~lgFL~~N~~~~~~~pAkIFMGD~GS 215 (346)
T TIGR02380 147 NMIDGIDGLLGGLSCVSFAALGYLFWLDG-----------QVELAYWCFALIVAILPYLMLNLGIPLGRKFKVFMGDAGS 215 (346)
T ss_pred HHhhcchhHHHHHHHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEeccchhh
Confidence 99999999999999999999887654321 122235677899999999999997 89999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 019958 314 YFAGMTMAVVGILGHF 329 (333)
Q Consensus 314 ~~lG~~la~i~I~~~~ 329 (333)
+++|+.+|+.++..+.
T Consensus 216 ~~LGf~la~~~i~~~~ 231 (346)
T TIGR02380 216 TFIGFTVIWLLLLATQ 231 (346)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999887643
No 6
>PRK15119 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase; Provisional
Probab=100.00 E-value=8.3e-43 Score=341.26 Aligned_cols=221 Identities=18% Similarity=0.206 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCccCcccCCCCCCC-CcccCCCCchHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHH
Q 019958 80 SLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQ-GTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAAL 158 (333)
Q Consensus 80 ~l~af~lt~~~~p~~~~~~~r~~l~g~di~k~~~r~-h~~~~P~~GGl~i~~~~li~~~l~~~~~~~~~~~~~~~~~~~l 158 (333)
++++++++++++|.++++++|.|++ |+||+|| |+++|||+||++++.+++++..++.. . .+. ....+
T Consensus 10 ~~~~~~~s~~l~~~~~~~a~r~gl~----D~P~~Rk~H~~~~P~~GGiai~~~~~~~~~~~~~--~-~~~-----~~~~l 77 (365)
T PRK15119 10 LISIFLFSTLFLFFARKVAKKIGLV----DKPNYRKRHQGLIPLVGGISVYAGICFTFGITDY--Y-IPH-----ASLYL 77 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC----CCCCCCcCCCCCCCCcCcHHHHHHHHHHHHHHHh--c-chh-----HHHHH
Confidence 3456788899999999999999987 5788877 99999999999999988776544211 1 111 11234
Q ss_pred HHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhCCeEEEecCCcccccCccccchhhHHHHHHHHHHHHhhhHh
Q 019958 159 ASICFMLLLGFVDDVLDVPWRVKLILPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSI 238 (333)
Q Consensus 159 ~~~~~~~liG~~DD~~~l~~~~Kl~~q~~aal~l~~~~~g~~~i~ip~~l~p~~g~~~i~lg~l~~~l~~l~iv~~~Nai 238 (333)
++...+.++|++||+++++++.|+..|++++..+.. +.| . .++ .+.+.++..++++++++++++++++++++||+
T Consensus 78 ~~~~ll~~iG~~DD~~~l~~~~RL~~Q~~aa~~l~~-~~g-~--~i~-~~~~~~~~~~i~~~~~~~~~tv~~iv~~iNA~ 152 (365)
T PRK15119 78 ACAGVLVFVGALDDRFDISVKIRATIQAAVGIVMMV-FAG-L--YLS-SLGYIFGPWEMVLGPFGYFLTLFAVWAAINAF 152 (365)
T ss_pred HHHHHHHHHHhHhcccCCCHHHHHHHHHHHHHHHHH-HhC-c--chh-ccccccccccccchHHHHHHHHHHHHHHHhHH
Confidence 455567789999999999999999999999976642 333 1 122 11112332235668899999999999999999
Q ss_pred hhhcCcchhhHHHHHHHHHHHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHhhccc----cCCccccCchhHH
Q 019958 239 NIHAGLNGLEVGQTVVIASAILLHNIMQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNW----YPSSVFVGDTYTY 314 (333)
Q Consensus 239 Nl~DGiDGLa~G~~~i~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~gallgFL~fN~----~PAkIFmGDtGS~ 314 (333)
|++||+|||++|++++++.++++..+... +.....+++.++|+++|||+||| |||||||||+||+
T Consensus 153 N~iDGiDGLa~g~~~i~~~~l~~~~~~~~-----------~~~~~~~~~~l~ga~lgFL~fN~~~~~~pAkIFMGD~GS~ 221 (365)
T PRK15119 153 NMVDGIDGLLGGLSCVSFAAMGIILWFDG-----------QTSLALWCFAMIAAILPYILLNLGILGRRYKVFMGDAGST 221 (365)
T ss_pred HhhcccchHHHHHHHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEeccchhHH
Confidence 99999999999999999999987765421 12234567788999999999999 5799999999999
Q ss_pred HHHHHHHHHHHHhc
Q 019958 315 FAGMTMAVVGILGH 328 (333)
Q Consensus 315 ~lG~~la~i~I~~~ 328 (333)
++|+.+|+.++...
T Consensus 222 ~LGf~la~~~i~~~ 235 (365)
T PRK15119 222 LIGFTVIWILLETT 235 (365)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988763
No 7
>PRK14655 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional
Probab=100.00 E-value=1e-42 Score=332.55 Aligned_cols=214 Identities=21% Similarity=0.218 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCccCcccCCCCCC--CCcccCCCCchHHHHHHHHHHHHHHHhhc-ccCcchhHHHHHHH
Q 019958 81 LAGFFITQKMIPVASRYVLRRNLFGYDINKKGTP--QGTIKVPESLGIVVGAVFLVLAILFQYFN-FTADSNWLVEYNAA 157 (333)
Q Consensus 81 l~af~lt~~~~p~~~~~~~r~~l~g~di~k~~~r--~h~~~~P~~GGl~i~~~~li~~~l~~~~~-~~~~~~~~~~~~~~ 157 (333)
+.+++++++++|.++++++|+|+ +|++|+++++ +||++||++||++++.+++++.+++..+. .+... ....
T Consensus 2 ~~s~~ls~~~~p~~i~~l~~~~~-~q~ir~dgP~~~~~k~~tPtmGGi~ii~~~li~~~~~~~~~~~~~~~-----~~~~ 75 (304)
T PRK14655 2 VVAALLSWFLVGLFIRYSKARGW-GQPVRQDGPQTHLAKEGTPTAGGVAFVLALALVFFPLYAFGHAGGER-----ELLI 75 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CCcccccCcccccCCCCCCCcChHHHHHHHHHHHHHHHHhhhccchH-----HHHH
Confidence 45788899999999999999996 7888776543 38999999999999999887765432221 11111 1123
Q ss_pred HHHHHHHHHHHHHhhcCC------------CchhhHHHHHHHHHHHHHHHHhCCeEEEecCCcccccCccccchhhHHHH
Q 019958 158 LASICFMLLLGFVDDVLD------------VPWRVKLILPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKL 225 (333)
Q Consensus 158 l~~~~~~~liG~~DD~~~------------l~~~~Kl~~q~~aal~l~~~~~g~~~i~ip~~l~p~~g~~~i~lg~l~~~ 225 (333)
+.+...++++|++||+.+ ++++.|+.+|++++......... . .+....|+ ..++++++
T Consensus 76 l~~~~~~~~iG~~DD~~kl~~~~~~~~~~gL~~~~Kl~~Q~l~a~~~~~~~~~---~-~~~~~~~~------~~~~~~~~ 145 (304)
T PRK14655 76 MLAALAMGVVGGIDDFLKIRSRMRGHGKKELLAREKFPLQFLVALVFAGFAAP---L-ASHELLPS------LGPVFDVL 145 (304)
T ss_pred HHHHHHHHHHHHHhhhhhhhccccccccCCCCHHHHHHHHHHHHHHHHHHHhc---c-cccccccc------hhhHHHHH
Confidence 456677899999999874 55678999999999765321110 0 00111121 13688999
Q ss_pred HHHHHHHHhhhHhhhhcCcchhhHHHHHHHHHHHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHhhccccCCc
Q 019958 226 YMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNIMQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSS 305 (333)
Q Consensus 226 l~~l~iv~~~NaiNl~DGiDGLa~G~~~i~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~gallgFL~fN~~PAk 305 (333)
++.+++++++||+|++||+||||+|++++++.+++..+ .++.+++|+++|||+||+||||
T Consensus 146 ~~~~~iv~~~NAvNl~DGLDGLa~g~~~i~~~~l~~~~--------------------~~~~~l~Ga~lGFL~fN~~PAk 205 (304)
T PRK14655 146 LIALVMVGSVNAFNFTDGLDGLLAGVAMIVLLPLLAVS--------------------PVSALLVAVLLGFLWFNAHPAR 205 (304)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHhhcCccc
Confidence 99999999999999999999999999999988775321 2456789999999999999999
Q ss_pred cccCchhHHHHHHHHHHHHHHhccc
Q 019958 306 VFVGDTYTYFAGMTMAVVGILGHFR 330 (333)
Q Consensus 306 IFmGDtGS~~lG~~la~i~I~~~~~ 330 (333)
|||||+||+++|+.+|.+++..+.+
T Consensus 206 IFMGDtGSl~LG~~la~~ai~~~~~ 230 (304)
T PRK14655 206 VFMGDMGSHAIGAVAAGAYILYADV 230 (304)
T ss_pred EEeeccchHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999998764
No 8
>cd06854 GT_WbpL_WbcO_like The members of this subfamily catalyze the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate (Und-P) molecule and N-acetylhexosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylhexosamine precursor. The WbcO/WbpL substrate specificity has not yet been determined, but the structure of their biosynthetic end products implies that UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or UDPN-acetyl-D-quinosamine (UDP-QuiNAc) are used. The subgroup of bacterial UDP-HexNAc:polyprenol-P HexNAc-1-P transferases includes the WbcO protein from Yersinia enterocolitica and the WbpL protein from Pseudomonas aeruginosa. These transferases initiate LPS O-antigen biosynthesis. Similar to other GlcNAc/MurNAc-1-P transferase family members, WbpL is a highly hydrophobic protein possessing 11 predicted transmembrane segments.
Probab=100.00 E-value=1.4e-42 Score=324.88 Aligned_cols=197 Identities=24% Similarity=0.377 Sum_probs=154.6
Q ss_pred cCCCCCCC-CcccCCCCchHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHH
Q 019958 108 INKKGTPQ-GTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFMLLLGFVDDVLDVPWRVKLILPS 186 (333)
Q Consensus 108 i~k~~~r~-h~~~~P~~GGl~i~~~~li~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~liG~~DD~~~l~~~~Kl~~q~ 186 (333)
+||||+|| |+++|||+||++++.+++++..++......... +....+.+...++++|++||+++++++.|+.+|+
T Consensus 2 ~D~P~~Rk~H~~~~P~~GGi~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~iG~~DD~~~l~~~~kl~~q~ 77 (253)
T cd06854 2 LDIPNERSSHTKPTPRGGGIAFVLAFLLALLLAAAAGPLNDL----SYLLLLIGLLLLAAVGFIDDLRSLSPKIRLLVQL 77 (253)
T ss_pred CCCCCCCCCCCCCcCCcChHHHHHHHHHHHHHHHHccccchh----HHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 37899988 999999999999999887776544321101111 1223455667788999999999999999999999
Q ss_pred HHHHHHHHHHhCCeEEEecCCcccccCccccchhhHHHHHHHHHHHHhhhHhhhhcCcchhhHHHHHHHHHHHHHHHHHH
Q 019958 187 FAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNIMQ 266 (333)
Q Consensus 187 ~aal~l~~~~~g~~~i~ip~~l~p~~g~~~i~lg~l~~~l~~l~iv~~~NaiNl~DGiDGLa~G~~~i~~~~l~i~~~~~ 266 (333)
+++.++.........+ .+ ..+.+|++++++++++++++||+|++||+||||+|++++++.++.++.+..
T Consensus 78 ~~a~~~~~~~~~~~~~---------~~--~~~~~~~~~~~~~~~iv~~~Na~Nl~DGldGLa~g~~~i~~~~l~~~~~~~ 146 (253)
T cd06854 78 LAAALALYALGPLTSL---------LL--NFLPPWLIALLLLLAIVWIINLYNFMDGIDGLAGGEALVVFLALALLGYLA 146 (253)
T ss_pred HHHHHHHHHhhhHhhh---------cc--hhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc
Confidence 9988764322110000 01 245688999999999999999999999999999999999999998776542
Q ss_pred hhcCCChhhhhhhHHHHHHHHHHHHHHHHHhhccccCCccccCchhHHHHHHHHHHHHHHhccc
Q 019958 267 IGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHFR 330 (333)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~l~gallgFL~fN~~PAkIFmGDtGS~~lG~~la~i~I~~~~~ 330 (333)
++.....++++++|+++|||+||+||||+||||+||+++|++++++++.++.+
T Consensus 147 -----------~~~~~~~~~~~l~ga~lgFL~~N~~pAkiFmGD~GS~~lG~~la~~~i~~~~~ 199 (253)
T cd06854 147 -----------GEPALALLALALAGALLGFLPFNWPPAKIFMGDVGSTFLGFLLAALLLLLALS 199 (253)
T ss_pred -----------cchHHHHHHHHHHHHHHHHHHhhCChhhcccccccHHHHHHHHHHHHHHHHhc
Confidence 12223467788999999999999999999999999999999999999998754
No 9
>PRK14654 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional
Probab=100.00 E-value=3.8e-42 Score=328.79 Aligned_cols=215 Identities=25% Similarity=0.387 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCccCcccCCCCCCCC--cccCCCCchHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHH
Q 019958 82 AGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQG--TIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALA 159 (333)
Q Consensus 82 ~af~lt~~~~p~~~~~~~r~~l~g~di~k~~~r~h--~~~~P~~GGl~i~~~~li~~~l~~~~~~~~~~~~~~~~~~~l~ 159 (333)
++|++|.+++|.++++++|+|+ +|++||+++++| |++||++||++++.+.++...+ . .+. ...+.
T Consensus 4 ~sf~~s~~~~p~~i~~~~k~~~-~~~ir~~g~~~H~~k~~tP~mGGi~i~~~~~~~~~~----~---~~~-----~~~l~ 70 (302)
T PRK14654 4 ANFLLNLFLYPILIKLFRRRRI-GQYIRKEGPDLHGYKEGTPTMGGILFVLTGFLFGMI----S---KTN-----TMVLL 70 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-CCCcccccccccccCCCCCcCCcHHHHHHHHHHHHH----H---HHH-----HHHHH
Confidence 4788999999999999999996 788888877667 8899999999998754433211 1 011 12344
Q ss_pred HHHHHHHHHHHhhcC--------CCchhhHHHHHHHHHHHHHHHHhCCeEEEecCCcccccCccccchhhHHHHHHHHHH
Q 019958 160 SICFMLLLGFVDDVL--------DVPWRVKLILPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLA 231 (333)
Q Consensus 160 ~~~~~~liG~~DD~~--------~l~~~~Kl~~q~~aal~l~~~~~g~~~i~ip~~l~p~~g~~~i~lg~l~~~l~~l~i 231 (333)
+...++++|++||+. +++++.|+++|++++.++.. +.. .... .|+++. .+++|+++++++.+++
T Consensus 71 ~~~~~~~iG~lDD~~~l~~~~~~gL~~~~Kl~~q~~~a~~~~~-~~~-~~~~-----~~~~~~-~~~lg~~~~~~~~~~i 142 (302)
T PRK14654 71 GMFLFFLIGFLDDFLSVARKDSTGLKTYQKALLQTLAAFIMLL-LIR-PETN-----VDFFGF-TIEMGKWYYLFALLVI 142 (302)
T ss_pred HHHHHHHHHHHhccHhhhccCCCCCCHHHHHHHHHHHHHHHHH-HHh-hccc-----cccccc-cccccHHHHHHHHHHH
Confidence 667789999999999 47899999999999987632 221 1122 234554 3577888999999999
Q ss_pred HHhhhHhhhhcCcchhhHHHHHHHHHHHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHhhccccCCccccCch
Q 019958 232 VFCTNSINIHAGLNGLEVGQTVVIASAILLHNIMQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDT 311 (333)
Q Consensus 232 v~~~NaiNl~DGiDGLa~G~~~i~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~gallgFL~fN~~PAkIFmGDt 311 (333)
++++||+|++||+|||++|++.+....+. .+... +......+.+++|+++|||+||+||||+||||+
T Consensus 143 v~~~NavNl~DGlDGLa~g~~~~~~~~~~--~~~~~-----------~~~~~~~~~~l~gallGFL~~N~~PAkIFMGDt 209 (302)
T PRK14654 143 VGSSNAMNLTDGLDGLAGWIYVSGSIPYW--FFLKE-----------RGVSEDILLILGAGVLAFLVFNSKPAKIFMGDT 209 (302)
T ss_pred HHHHHHhHHhhccchHHHHHHHHHHHHHH--HHhcc-----------ccHHHHHHHHHHHHHHHHHhhcCChhheeccch
Confidence 99999999999999999998765443222 11110 111224477899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccc
Q 019958 312 YTYFAGMTMAVVGILGHFR 330 (333)
Q Consensus 312 GS~~lG~~la~i~I~~~~~ 330 (333)
||+++|+.+|++++.++.+
T Consensus 210 GSl~LG~~la~~~i~~~~~ 228 (302)
T PRK14654 210 GSITLGGVLGTVSVLTKTE 228 (302)
T ss_pred hhHHHHHHHHHHHHHHhhH
Confidence 9999999999999887643
No 10
>cd06856 GT_GPT_archaea UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT)-like proteins in archaea. Eukaryotic GPT catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-linked glycosylation. Evidence for the existence of the N-glycosylation pathway in archaea has emerged and genes responsible for the pathway have been identified. A glycosyl transferase gene Mv1751 in M. voltae encodes for the enzyme that carries out the first step in the pathway, the attachment of GlcNAc to a dolichol lipid carrier in the membrane. A lethal mutation in the alg7 (GPT) gene in Saccharomyces cerevisiae was successfully complemented with Mv1751, the archaea gene, indicating that eukaryotic and archaeal enzymes may use the same substrates and are evolutionarily closer than the bacterial enzyme, which uses a different substrate.
Probab=100.00 E-value=6.7e-42 Score=324.39 Aligned_cols=200 Identities=30% Similarity=0.423 Sum_probs=159.8
Q ss_pred CcccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHH
Q 019958 105 GYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFMLLLGFVDDVLDVPWRVKLIL 184 (333)
Q Consensus 105 g~di~k~~~r~h~~~~P~~GGl~i~~~~li~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~liG~~DD~~~l~~~~Kl~~ 184 (333)
|+|+||+++ ++|||+||++++.+++++..++.... . ..+....+.+...++++|++||+.+++||.|+++
T Consensus 2 g~d~hk~~~----~~vP~~GGi~~~~~~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~~lG~~DD~~~l~~~~Kl~~ 71 (280)
T cd06856 2 GRDVHKPGK----PEVPEMGGIAVLLGFSLGLLFLSALT--H----SVEALALLITSLLAGLIGLLDDILGLSQSEKVLL 71 (280)
T ss_pred CccccccCC----CCCCCcchHHHHHHHHHHHHHHHHcc--c----hHHHHHHHHHHHHHHHHHhhhccccCCHHHHHHH
Confidence 678888754 58999999999999888776543221 1 1233445667788899999999999999999999
Q ss_pred HHHHHHHHHHHHhCCeEEEecCCcccccCccccchhhHHHHHHHHHHHHhhhHhhhhcCcchhhHHHHHHHHHHHHHHHH
Q 019958 185 PSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNI 264 (333)
Q Consensus 185 q~~aal~l~~~~~g~~~i~ip~~l~p~~g~~~i~lg~l~~~l~~l~iv~~~NaiNl~DGiDGLa~G~~~i~~~~l~i~~~ 264 (333)
|+++++++...+.+.+.+.+| ++. ....++++++++.+++++++||+|++||+|||++|++++++.++.++++
T Consensus 72 ~~~aa~~l~~~~~~~~~~~~p------~~~-~~~~~~~~~~~~~l~iv~~~Na~N~~DGinGL~~g~~~i~~~~l~~~~~ 144 (280)
T cd06856 72 TALPAIPLLVLKAGNPLTSLP------IGG-RVLGILYYLLIVPLGITGASNAFNMLAGFNGLEAGMGIIILLALAIILL 144 (280)
T ss_pred HHHHHHHHHHHHHhcceeecC------ccc-hhhhhHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 999999886544444444444 121 1223467788999999999999999999999999999999999988776
Q ss_pred HHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHhhccccCCccccCchhHHHHHHHHHHHHHHhccccc
Q 019958 265 MQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHFRYV 332 (333)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~l~gallgFL~fN~~PAkIFmGDtGS~~lG~~la~i~I~~~~~~~ 332 (333)
.+ ++..+..++++++++++|||+|||||||+||||+||+++|+++|++++.+|++++
T Consensus 145 ~~-----------~~~~~~~l~~~l~~a~lgFL~~N~~PAkiF~GD~GS~~lG~~la~~~i~~~~~~~ 201 (280)
T cd06856 145 IN-----------GDYDALIIALILVAALLAFLLYNKYPAKVFPGDVGTLPIGALIGTIAVLGGLEII 201 (280)
T ss_pred Hc-----------CCHHHHHHHHHHHHHHHHHHHhhcCccceeccchHHHHHHHHHHHHHHHHhhHHH
Confidence 43 1233456778899999999999999999999999999999999999999998764
No 11
>cd06912 GT_MraY_like This subfamily is composed of uncharacterized bacterial glycosyltransferases in the MraY-like family. This family contains both eukaryotic and prokaryotic UDP-D-N-acetylhexosamine:polyprenol phosphate D-N-acetylhexosamine-1-phosphate transferases, which catalyze the transfer of a D-N-acetylhexosamine 1-phosphate to a membrane-bound polyprenol phosphate. This is the initiation step of protein N-glycosylation in eukaryotes and peptidoglycan biosynthesis in bacteria. The three bacterial members MraY, WecA, and WbpL/WbcO, utilize undecaprenol phosphate as the acceptor substrate, but use different UDP-sugar donor substrates. MraY-type transferases are highly specific for UDP-N-acetylmuramate-pentapeptide, whereas WecA proteins are selective for UDP-N-acetylglucosamine (UDP-GlcNAc). The WbcO/WbpL substrate specificity has not yet been determined, but the structure of their biosynthetic end products implies that UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or UDPN-acetyl-D-
Probab=100.00 E-value=1.3e-41 Score=306.44 Aligned_cols=190 Identities=20% Similarity=0.287 Sum_probs=146.4
Q ss_pred CCCCC-CcccCCCCchHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCc-hhhHHHHHHHH
Q 019958 111 KGTPQ-GTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFMLLLGFVDDVLDVP-WRVKLILPSFA 188 (333)
Q Consensus 111 ~~~r~-h~~~~P~~GGl~i~~~~li~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~liG~~DD~~~l~-~~~Kl~~q~~a 188 (333)
||+|| |+++|||+||++++++++++..++... ... +....+++...+.++|++||+++++ +|.|+.+|+++
T Consensus 1 P~~rk~H~~~~P~~GGi~i~~~~~i~~~~~~~~--~~~-----~~~~l~~~~~~~~~iG~~DD~~~l~~~~~kl~~q~~~ 73 (193)
T cd06912 1 DGIQKFHTRPTPRIGGVAIFLGLLAGLLLLSLL--SGS-----LLLLLLLAALPAFLAGLLEDITKRVSPRIRLLATFLS 73 (193)
T ss_pred CCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHc--cch-----HHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHH
Confidence 45666 999999999999999887765443211 111 1122455566788999999999999 99999999999
Q ss_pred HHHHHHHHhCCeEEEecCCcccccCccccchhhHHHHHHHHHHHHhhhHhhhhcCcchhhHHHHHHHHHHHHHHHHHHhh
Q 019958 189 ALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNIMQIG 268 (333)
Q Consensus 189 al~l~~~~~g~~~i~ip~~l~p~~g~~~i~lg~l~~~l~~l~iv~~~NaiNl~DGiDGLa~G~~~i~~~~l~i~~~~~~~ 268 (333)
++++.. +.+.. ++....|+.+. .+++++++++++++++++++||+|++||+|||++|++++++.++++..+...
T Consensus 74 a~~~~~-~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~iv~~~Na~N~~DGidGLa~g~~~i~~~~l~~~~~~~g- 147 (193)
T cd06912 74 ALLAVW-LLGAS---ITRLDLPGLDL-LLSFPPFAIIFTIFAVAGVANAFNIIDGFNGLASGVAIISLLSLALVAFQVG- 147 (193)
T ss_pred HHHHHH-HhcCc---cceeecccccc-chhhhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHcC-
Confidence 986643 33321 11111233332 3567899999999999999999999999999999999999999987765421
Q ss_pred cCCChhhhhhhHHHHHHHHHHHHHHHHHhhccccCCccccCchhHHHHHHHHHHH
Q 019958 269 ASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVV 323 (333)
Q Consensus 269 ~~~~~~~~~~~~~~~~l~~~l~gallgFL~fN~~PAkIFmGDtGS~~lG~~la~i 323 (333)
+.....+++.++|+++|||+||+|||||||||+||+++|+.+++.
T Consensus 148 ----------~~~~~~~~~~l~gallgFL~~N~~pAkiFmGD~GS~~lG~~la~l 192 (193)
T cd06912 148 ----------DTDLAFLALLLAGALLGFLIFNFPFGKIFLGDGGAYLLGFLLAWL 192 (193)
T ss_pred ----------CHHHHHHHHHHHHHHHHHHHHhCChhheeccchhhHHHHHHHHHh
Confidence 122335678899999999999999999999999999999999975
No 12
>TIGR00445 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase. Involved in peptidoglycan biosynthesis, the enzyme catalyzes the first of the lipid cycle reactions. Also known as Muramoyl-Pentapeptide Transferase (murX).
Probab=100.00 E-value=2.1e-41 Score=326.58 Aligned_cols=228 Identities=25% Similarity=0.318 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHHcCccCcccCCCCC--CCCcccCCCCchHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHH
Q 019958 88 QKMIPVASRYVLRRNLFGYDINKKGT--PQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFML 165 (333)
Q Consensus 88 ~~~~p~~~~~~~r~~l~g~di~k~~~--r~h~~~~P~~GGl~i~~~~li~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (333)
.+++|.++++++|+|+.+ +.+++++ ++||++|||+||++++.+++++..++.. ..++.. ...+.+...++
T Consensus 2 ~~~~p~~i~~~~r~~~~~-~~~~~~~~~h~~~~~tP~~GGiai~~~~~~~~~~~~~--~~~~~~-----~~~l~~~~~~~ 73 (321)
T TIGR00445 2 LLLGPKVIPMLKKLKAGQ-VIRSDGPKSHLKKKGTPTMGGIMIVFAIIVSTVLWAQ--LGNPYV-----LLVLFVLLGYG 73 (321)
T ss_pred EEeHHHHHHHHHHhCCCC-CcccccchhccCCCCCCCcChHHHHHHHHHHHHHHHH--ccchHH-----HHHHHHHHHHH
Confidence 457899999999999753 3344333 2367799999999999988777654321 111111 12344555678
Q ss_pred HHHHHhhcC--------CCchhhHHHHHHHHHHHHHHH--HhCC-eEEEecCCcccccCccccchhhHHHHHHHHHHHHh
Q 019958 166 LLGFVDDVL--------DVPWRVKLILPSFAALPLLMA--YAGH-TSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFC 234 (333)
Q Consensus 166 liG~~DD~~--------~l~~~~Kl~~q~~aal~l~~~--~~g~-~~i~ip~~l~p~~g~~~i~lg~l~~~l~~l~iv~~ 234 (333)
++|++||+. +++++.|+.+|+++++++... +.|. +.+.+ |+.+...++++|+++++++++++++
T Consensus 74 ~iG~~DD~~~~~~~~~~gl~~~~rl~~q~~~a~~~~~~~~~~~~~~~~~~-----p~~~~~~~~lg~~~~~~~~~~iv~~ 148 (321)
T TIGR00445 74 FIGFVDDYRKIKRKSNKGLTAKQKLFGQIIIALIFCTWLYYYGPDTFIYI-----PFIKDFMFDLGLFYILLAYFVLVGT 148 (321)
T ss_pred HHHHHHhHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEec-----cccccccccccHHHHHHHHHHHHHH
Confidence 999999999 599999999999999876421 2232 22222 3333223577899999999999999
Q ss_pred hhHhhhhcCcchhhHHHHHHHHHHHHHHHHHHhhcC-----CChhhhhhhHHHHHHHHHHHHHHHHHhhccccCCccccC
Q 019958 235 TNSINIHAGLNGLEVGQTVVIASAILLHNIMQIGAS-----LDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVG 309 (333)
Q Consensus 235 ~NaiNl~DGiDGLa~G~~~i~~~~l~i~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~gallgFL~fN~~PAkIFmG 309 (333)
+||+|++||+|||++|++++++.++++.++...... ..|..++.. ....++++++|+++|||+|||||||||||
T Consensus 149 ~Na~N~~DGlDGLa~g~~~i~~~~l~~~~~~~g~~~~~~~l~~~~~~~~~-~~~~~~~~l~ga~lgFL~fN~~pAkIFMG 227 (321)
T TIGR00445 149 SNAVNLTDGLDGLAIGPSAIAFGALAILAWATGNANFAKYLHIPYLKDSG-ELVIFCTALVGASLGFLWFNAYPAKVFMG 227 (321)
T ss_pred hhhhhhhcccchHhHHHHHHHHHHHHHHHHHccchhHhhhhcccccCcch-HHHHHHHHHHHHHHHHHHhhCChhheecc
Confidence 999999999999999999999999987765421000 000000000 12356788999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhcc
Q 019958 310 DTYTYFAGMTMAVVGILGHF 329 (333)
Q Consensus 310 DtGS~~lG~~la~i~I~~~~ 329 (333)
|+||+++|+.+|++++.++.
T Consensus 228 D~GS~~LG~~la~~~i~~~~ 247 (321)
T TIGR00445 228 DTGSLALGGALGAVAILTKN 247 (321)
T ss_pred chHHHHHHHHHHHHHHHHcc
Confidence 99999999999999998753
No 13
>KOG2788 consensus Glycosyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-42 Score=326.97 Aligned_cols=257 Identities=57% Similarity=0.966 Sum_probs=227.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCcccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHhhcc-------
Q 019958 72 SILINAGLSLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNF------- 144 (333)
Q Consensus 72 ~~l~~~~~~l~af~lt~~~~p~~~~~~~r~~l~g~di~k~~~r~h~~~~P~~GGl~i~~~~li~~~l~~~~~~------- 144 (333)
+.+++.+.+..+...+..+.|.+.....|.|+.|+|.+|++++ .+|+..|.....++++..+.+..+.+
T Consensus 5 ~l~~n~~~s~~~y~at~~~iPr~g~~Fi~~~l~g~dl~k~~~~----~~pe~~gai~a~V~l~v~~~fIP~pfm~~~~~~ 80 (418)
T KOG2788|consen 5 ALLINVGFSSAGYEATVMLIPRVGVSFIKAGLFGKDLNKDNRP----VIPETIGAISAAVYLIVMFIFIPFPFMFRGTPQ 80 (418)
T ss_pred hhhhhhhhhhhhhhhhhhccccccceeeeecccccccCcCCcc----cCchhhhhHHHHHHHHHHHhhcccccccCCCCc
Confidence 4456778888899999999999999999999999999999864 78999999988888887765543222
Q ss_pred ------c-----CcchhHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHH---hCCeEEEecCCccc
Q 019958 145 ------T-----ADSNWLVEYNAALASICFMLLLGFVDDVLDVPWRVKLILPSFAALPLLMAY---AGHTSIIIPKPLVP 210 (333)
Q Consensus 145 ------~-----~~~~~~~~~~~~l~~~~~~~liG~~DD~~~l~~~~Kl~~q~~aal~l~~~~---~g~~~i~ip~~l~p 210 (333)
+ -++.-+.|++..+++++.+.++|+.||+.|++||+|+.++.++++|+++.| .|+|.+.+|+++.+
T Consensus 81 ~d~~v~e~~~~~Fphd~l~~l~sallsi~~~ilLGfaDD~ldlrWRhKl~lPt~AtlPLLmVYyv~~g~TtV~iP~~~r~ 160 (418)
T KOG2788|consen 81 GDVSVVESFQFNFPHDKLVELLSALLSICSMILLGFADDVLDLRWRHKLLLPTIATLPLLMVYYVSFGVTTVVIPKPLRN 160 (418)
T ss_pred ccccccccccccCChHHHHHHHHHHHHHhHHHHhcccchhccchhhhheeccchhhCceEEEEEEcCCceEEEecHHHHh
Confidence 0 112235788889999999999999999999999999999999999998776 78899999999999
Q ss_pred ccCccccchhhHHHHHHHHHHHHhhhHhhhhcCcchhhHHHHHHHHHHHHHHHHHHhhcCCChh-hhhhhHHHHHHHHHH
Q 019958 211 YVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNIMQIGASLDPE-YKQAHAFSIYLVQPL 289 (333)
Q Consensus 211 ~~g~~~i~lg~l~~~l~~l~iv~~~NaiNl~DGiDGLa~G~~~i~~~~l~i~~~~~~~~~~~~~-~~~~~~~~~~l~~~l 289 (333)
+.|...+++|.+|++++....++|+|++|+++|+||++.||+++++.++.+.++.+..++.+++ ..+.|.+|.++.+++
T Consensus 161 ~l~~~~~nlg~lYy~yM~~lavFCtNsINIlAGiNGlEvGQslvia~~i~l~~l~~~~~~~~~~~~~~~h~fSlyl~~p~ 240 (418)
T KOG2788|consen 161 ILGLTSLNLGFLYYVYMGLLAVFCTNSINILAGINGLEVGQSLVIAASILLNNLVYLWRSVDPEATRFAHAFSLYLTIPL 240 (418)
T ss_pred hhccceecccchHHhhhceeeeeccCchhhhcccchheeccchhhhHHHHhhhHHHHhcccCccccchhhhHHHHHHhHH
Confidence 9997788999999999999999999999999999999999999999999988888775544553 345788999999999
Q ss_pred HHHHHHHhhccccCCccccCchhHHHHHHHHHHHHHHhccccc
Q 019958 290 LATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHFRYV 332 (333)
Q Consensus 290 ~gallgFL~fN~~PAkIFmGDtGS~~lG~~la~i~I~~~~~~~ 332 (333)
.+..++.+.|||||+|+|+|||.+||.|+++|+++|+||||||
T Consensus 241 ~~~sl~ll~~n~yPsrVFVGDTfcyfaGMt~AVVgILGHFSKT 283 (418)
T KOG2788|consen 241 LATSLALLKYNWYPSRVFVGDTFCYFAGMTFAVVGILGHFSKT 283 (418)
T ss_pred HHHHHHHHHhccCCceEEeccceeeeccchhhhhHHhhhhHHH
Confidence 9999999999999999999999999999999999999999998
No 14
>cd06499 GT_MraY-like Glycosyltransferase 4 (GT4) includes both eukaryotic and prokaryotic UDP-D-N-acetylhexosamine:polyprenol phosphate D-N-acetylhexosamine-1-phosphate transferases. They catalyze the transfer of a D-N-acetylhexosamine 1-phosphate to a membrane-bound polyprenol phosphate, which is the initiation step of protein N-glycosylation in eukaryotes and peptidoglycan biosynthesis in bacteria. One member, D-N-acetylhexosamine 1-phosphate transferase (GPT) is a eukaryotic enzyme, which is specific for UDP-GlcNAc as donor substrate and dolichol-phosphate as the membrane bound acceptor. The bacterial members MraY, WecA, and WbpL/WbcO utilize undecaprenol phosphate as the acceptor substrate, but use different UDP-sugar donor substrates. MraY-type transferases are highly specific for UDP-N-acetylmuramate-pentapeptide, whereas WecA proteins are selective for UDP-N-acetylglucosamine (UDP-GlcNAc). The WbcO/WbpL substrate specificity has not yet been determined, but the structure of thei
Probab=100.00 E-value=1.1e-39 Score=292.19 Aligned_cols=181 Identities=33% Similarity=0.523 Sum_probs=141.2
Q ss_pred cCCCCchHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhhcCCC----chhhHHHHHHHHHHHHHH
Q 019958 119 KVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFMLLLGFVDDVLDV----PWRVKLILPSFAALPLLM 194 (333)
Q Consensus 119 ~~P~~GGl~i~~~~li~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~liG~~DD~~~l----~~~~Kl~~q~~aal~l~~ 194 (333)
+|||+||++++.+++++..++.. ..+ . +....+.+...+.++|++||++++ |+|.|+.+|++++.++..
T Consensus 1 ~tP~~GGi~i~~~~~~~~~~~~~--~~~-~----~~~~~l~~~~~~~~iG~~DD~~~l~~gl~~~~kl~~q~~~a~~~~~ 73 (185)
T cd06499 1 PTPTMGGLAILLGFLLGVLLYIP--HSN-T----LILLALLSGLVAGIVGFIDDLLGLKVELSEREKLLLQILAALFLLL 73 (185)
T ss_pred CCCCcccHHHHHHHHHHHHHHHh--cch-H----HHHHHHHHHHHHHHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 69999999999988777654321 111 1 122345566778899999999999 999999999999987654
Q ss_pred HHhCCeEEEecCCcccccCccccchhhHHHHHHHHHHHHhhhHhhhhcCcchhhHHHHHHHHHHHHHHHHHHhhcCCChh
Q 019958 195 AYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNIMQIGASLDPE 274 (333)
Q Consensus 195 ~~~g~~~i~ip~~l~p~~g~~~i~lg~l~~~l~~l~iv~~~NaiNl~DGiDGLa~G~~~i~~~~l~i~~~~~~~~~~~~~ 274 (333)
.......+..| ++. .++++|++++++++++++++||+|++||+|||++|++++++.++.+..+...
T Consensus 74 ~~~~~~~~~~~------~~~-~~~l~~~~~~~~~~~iv~~~Na~N~~DGlDGLa~g~~~i~~~~l~~~~~~~~------- 139 (185)
T cd06499 74 IGGGHTTVTTP------LGF-VLDLGIFYIPFAIIAIVGATNAVNLIDGMDGLAAGISVIASIACALFALLSG------- 139 (185)
T ss_pred HHHHhceeecC------ccc-hhhhhHHHHHHHHHHHHHHhhHhHHhhccchHHHHHHHHHHHHHHHHHHHcC-------
Confidence 32222222222 232 4677899999999999999999999999999999999999999987765431
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhccccCCccccCchhHHHHHHHHHHHH
Q 019958 275 YKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVVG 324 (333)
Q Consensus 275 ~~~~~~~~~~l~~~l~gallgFL~fN~~PAkIFmGDtGS~~lG~~la~i~ 324 (333)
+.....++++++|+++|||+|||||||+||||+||+++|+.+++++
T Consensus 140 ----~~~~~~~~~~l~ga~lgFL~~N~~pAkiFmGD~GS~~lG~~la~~a 185 (185)
T cd06499 140 ----QTTSALLFIILAGACLGFLYFNFYPAKIFMGDTGSYFLGAAYAAVA 185 (185)
T ss_pred ----ChHHHHHHHHHHHHHHHHHHHhCCccceecccHHHHHHHHHHHHhC
Confidence 1223456788999999999999999999999999999999999763
No 15
>cd06853 GT_WecA_like This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.
Probab=100.00 E-value=2.8e-39 Score=301.78 Aligned_cols=195 Identities=29% Similarity=0.447 Sum_probs=152.0
Q ss_pred CCcccCCCCchHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHH
Q 019958 115 QGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFMLLLGFVDDVLDVPWRVKLILPSFAALPLLM 194 (333)
Q Consensus 115 ~h~~~~P~~GGl~i~~~~li~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~liG~~DD~~~l~~~~Kl~~q~~aal~l~~ 194 (333)
+|+++|||+||++++++++++..++.... ... ..++...+.+...++++|++||+++++++.|+..|+++++++..
T Consensus 3 ~H~~~~P~~GGi~i~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~iG~~DD~~~l~~~~kl~~q~~~a~~~~~ 78 (249)
T cd06853 3 VHKGPIPRLGGLAIFLGFLLALLLALLFP--FFL--LPELLGLLAGATIIVLLGLLDDLFDLSPKVKLLGQILAALIVVF 78 (249)
T ss_pred CCCCCCCCcCcHHHHHHHHHHHHHHHhcc--cch--hHHHHHHHHHHHHHHheehHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 39999999999999998877765443211 001 11223345666778899999999999999999999999987643
Q ss_pred HHhCCeEEEecCCcccccCccccchhhHHHHHHHHHHHHhhhHhhhhcCcchhhHHHHHHHHHHHHHHHHHHhhcCCChh
Q 019958 195 AYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNIMQIGASLDPE 274 (333)
Q Consensus 195 ~~~g~~~i~ip~~l~p~~g~~~i~lg~l~~~l~~l~iv~~~NaiNl~DGiDGLa~G~~~i~~~~l~i~~~~~~~~~~~~~ 274 (333)
.+..... ...|+++. .++.+|++++++++++++++|++|++||+|||++|++++++.++.++++...
T Consensus 79 --~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~i~~~~Na~N~~DGidGLa~~~~~i~~~~l~~~~~~~~------- 145 (249)
T cd06853 79 --GGGVILS---LLGPFGGG-IILLGWLSIPLTVLWIVGIINAINLIDGLDGLAGGVALIASLALAILALLNG------- 145 (249)
T ss_pred --hcCeeee---cccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcC-------
Confidence 2322111 12233332 4667899999999999999999999999999999999999999887765431
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhccccCCccccCchhHHHHHHHHHHHHHHhccc
Q 019958 275 YKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHFR 330 (333)
Q Consensus 275 ~~~~~~~~~~l~~~l~gallgFL~fN~~PAkIFmGDtGS~~lG~~la~i~I~~~~~ 330 (333)
+.....++++++|+++||++|||||||+||||+||+++|+.+|++++.++.+
T Consensus 146 ----~~~~~~~~~~l~~a~lgFl~~N~~pakiFmGD~GS~~lG~~la~~~l~~~~~ 197 (249)
T cd06853 146 ----QVLVALLALALAGALLGFLPYNFHPARIFMGDAGSLFLGFLLAVLSILGTQK 197 (249)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHhCCcccEEeeCchHHHHHHHHHHHHHHHhcc
Confidence 1223456788999999999999999999999999999999999999998765
No 16
>cd06852 GT_MraY Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the formation of the first lipid intermediate in the synthesis of bacterial cell wall peptidoglycan. It catalyzes the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. It is an integral membrane protein with possibly ten transmembrane domains.
Probab=100.00 E-value=4.4e-38 Score=298.49 Aligned_cols=197 Identities=24% Similarity=0.347 Sum_probs=147.5
Q ss_pred CCCcccCCCCchHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhhcC--------CCchhhHHHHH
Q 019958 114 PQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFMLLLGFVDDVL--------DVPWRVKLILP 185 (333)
Q Consensus 114 r~h~~~~P~~GGl~i~~~~li~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~liG~~DD~~--------~l~~~~Kl~~q 185 (333)
+.|+++|||+||++++.+++++..++... .+.. ....+.+...+.++|++||+. +++++.|+++|
T Consensus 5 ~~h~~~~P~~GGiai~~~~~~~~~~~~~~--~~~~-----~~~~l~~~~~~~~vG~~DD~~~l~~~~~~~l~~~~rL~~q 77 (280)
T cd06852 5 HLKKAGTPTMGGILFILAILISTLLWADL--DSPE-----VLLLLLLTLGFGLIGFLDDYLKVVKKRNLGLSARQKLLLQ 77 (280)
T ss_pred cCCCCCCCCccHHHHHHHHHHHHHHHHHc--ccHH-----HHHHHHHHHHHHhhhHHHhhHHHhccCCCCCCHHHHHHHH
Confidence 34999999999999999888776543211 1111 112344556678999999999 56999999999
Q ss_pred HHHHHHHHHHHhCCeEEEecCCcccccCccccchhhHHHHHHHHHHHHhhhHhhhhcCcchhhHHHHHHHHHHHHHHHHH
Q 019958 186 SFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNIM 265 (333)
Q Consensus 186 ~~aal~l~~~~~g~~~i~ip~~l~p~~g~~~i~lg~l~~~l~~l~iv~~~NaiNl~DGiDGLa~G~~~i~~~~l~i~~~~ 265 (333)
++++.++...... .....+....|+.+...++++|++++++++++++++|++|++||+||+++|++++++.++.+.++.
T Consensus 78 ~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~l~v~~iv~~~Na~N~~DGiDGLa~g~~~i~~~~l~~~~~~ 156 (280)
T cd06852 78 FLIAIVFALLLYY-FNGSGTLITLPFFKNGLIDLGILYIPFAIFVIVGSSNAVNLTDGLDGLAAGVSIIVALALAIIAYL 156 (280)
T ss_pred HHHHHHHHHHHHH-hcccccceeccccccccccchHHHHHHHHHHHHHHhhHhhhccCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999876542211 000001011112222246778999999999999999999999999999999999999998877654
Q ss_pred HhhcCCChhhhhhhHH-HHHHHHHHHHHHHHHhhccccCCccccCchhHHHHHHHHHHHHHHhcc
Q 019958 266 QIGASLDPEYKQAHAF-SIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHF 329 (333)
Q Consensus 266 ~~~~~~~~~~~~~~~~-~~~l~~~l~gallgFL~fN~~PAkIFmGDtGS~~lG~~la~i~I~~~~ 329 (333)
.. +.. ...++++++|+++|||+|||||||+||||+||+++|+.+|++++.++.
T Consensus 157 ~~-----------~~~~~~~~~~~l~ga~lgFL~~N~~pAkIFmGD~GS~~lG~~la~~~i~~~~ 210 (280)
T cd06852 157 AG-----------NAVFLAVFCAALVGACLGFLWFNAYPAKVFMGDTGSLALGGALAALAILTKQ 210 (280)
T ss_pred hc-----------ChhHHHHHHHHHHHHHHHHHHHhcCcceEEeechHHHHHHHHHHHHHHHhcc
Confidence 21 121 335677899999999999999999999999999999999999988653
No 17
>PF00953 Glycos_transf_4: Glycosyl transferase family 4; InterPro: IPR000715 This entry represents a family of UDP-GlcNAc/MurNAc: polyisoprenol-P GlcNAc/MurNAc-1-P transferases. Members of the family include eukaryotic N-acetylglucosamine-1-phosphate transferases, which catalyse the conversion of UDP-N-acteyl-D-glucosamine and dolichyl phosphate to UMP and N-acetyl-D-glucosaminyl-diphosphodolichol in the glycosylation pathway; and bacterial phospho-N-acetylmuramoyl-pentapeptide-transferases, which catalyse the first step of the lipid cycle reactions in the biosynthesis of cell wall peptidoglycan.; GO: 0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity, 0016021 integral to membrane
Probab=100.00 E-value=6.1e-35 Score=255.48 Aligned_cols=155 Identities=31% Similarity=0.545 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhCCeEEEecCCcccccCccccchh-hHHHHHHHHHHHHhh
Q 019958 157 ALASICFMLLLGFVDDVLDVPWRVKLILPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLG-WIYKLYMFLLAVFCT 235 (333)
Q Consensus 157 ~l~~~~~~~liG~~DD~~~l~~~~Kl~~q~~aal~l~~~~~g~~~i~ip~~l~p~~g~~~i~lg-~l~~~l~~l~iv~~~ 235 (333)
.+.+...++++|++||+++++++.|+..|.+++.++...+.+.+.+.. |+.+ ..++++ +++++++.+++++.+
T Consensus 4 ~l~~~~~~~~iG~~DD~~~l~~~~rl~~q~~~a~~~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~l~~~~i~~~~ 77 (159)
T PF00953_consen 4 LLLALLLIGLIGLLDDLKGLSPRLRLLLQLLAALLLVFLGGGLTSLGI-----PFGG-GIINLGPWLAIILTVLWIVGFI 77 (159)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhccccc-----ccCc-chHHHHHHHHHHHHHHHHHHHH
Confidence 456677889999999999999999999999999987654322223322 2231 256777 788999999999999
Q ss_pred hHhhhhcCcchhhHHHHHHHHHHHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHhhccccCCccccCchhHHH
Q 019958 236 NSINIHAGLNGLEVGQTVVIASAILLHNIMQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYF 315 (333)
Q Consensus 236 NaiNl~DGiDGLa~G~~~i~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~gallgFL~fN~~PAkIFmGDtGS~~ 315 (333)
|++|++||+||+++|++++++..+...++.. ++.....++.+++++++||++|||||||+||||+||++
T Consensus 78 Na~N~~DG~dGla~~~~~i~~~~l~~~~~~~-----------~~~~~~~~~~~l~~a~lgfl~~N~~pakiFmGD~GS~~ 146 (159)
T PF00953_consen 78 NAFNFMDGIDGLAAGVSIIALLALAVIAYLQ-----------GNYELAILCLALAGALLGFLIFNFPPAKIFMGDSGSLF 146 (159)
T ss_pred hHHHhhccCcchHHHHHHHHHHHHHHHHHhc-----------CcHHHHHHHHHHHHHHHHHHHHHCCCCEEEeccHhHHH
Confidence 9999999999999999999999998877543 22334466778999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 019958 316 AGMTMAVVGILGH 328 (333)
Q Consensus 316 lG~~la~i~I~~~ 328 (333)
+|+.++++++.+|
T Consensus 147 lG~~la~~~i~~~ 159 (159)
T PF00953_consen 147 LGFLLAVLAILGH 159 (159)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999987
No 18
>PF10555 MraY_sig1: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ; InterPro: IPR018480 Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (MraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis []. It catalyses the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. MraY is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologues of MraY have been found in archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress). This entry represents two conserved sites found in these proteins. The first site is located at the end of the first cytoplasmic loop and the beginning of the second transmembrane domain. The second site is located in the third cytoplasmic loop.
Probab=86.70 E-value=0.093 Score=26.97 Aligned_cols=11 Identities=36% Similarity=0.392 Sum_probs=8.9
Q ss_pred ccCCCCchHHH
Q 019958 118 IKVPESLGIVV 128 (333)
Q Consensus 118 ~~~P~~GGl~i 128 (333)
+.||++||+.+
T Consensus 2 ~gTPTMGGi~~ 12 (13)
T PF10555_consen 2 SGTPTMGGIVF 12 (13)
T ss_pred CCCccceeEEE
Confidence 57999999764
No 19
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=50.52 E-value=41 Score=32.66 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=16.6
Q ss_pred CccCcccCCCCCCCCcccCCC
Q 019958 102 NLFGYDINKKGTPQGTIKVPE 122 (333)
Q Consensus 102 ~l~g~di~k~~~r~h~~~~P~ 122 (333)
++.|+|+|+.++|+.++|.|+
T Consensus 68 d~~DrdiD~~~~RT~~RPLps 88 (300)
T PRK12876 68 QIIDCAIDKKNPRTSSRVLPA 88 (300)
T ss_pred hHHHhcccCCCCCCCCCCCCC
Confidence 347999999999876777776
No 20
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=43.33 E-value=47 Score=31.53 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=15.0
Q ss_pred ccCcccCCCCCCCCcccCCCC
Q 019958 103 LFGYDINKKGTPQGTIKVPES 123 (333)
Q Consensus 103 l~g~di~k~~~r~h~~~~P~~ 123 (333)
+.|+|+|+.|+|+.++|.|++
T Consensus 69 ~~D~eiD~~n~rt~~RPl~sG 89 (289)
T COG0382 69 LADREIDRINPRTKNRPLPSG 89 (289)
T ss_pred HhhhhccCCCCCccCCCCCCC
Confidence 468899999888655565543
No 21
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=36.91 E-value=1.9e+02 Score=22.92 Aligned_cols=42 Identities=24% Similarity=0.363 Sum_probs=20.8
Q ss_pred HHHHHHHhHHHHHHHHHhccchH------H-HHHHHHHHHHHHHHHHHH
Q 019958 46 KLCLFFAIPYFYLLFYHYKIESE------L-QRSILINAGLSLAGFFIT 87 (333)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~l~~~~~~l~af~lt 87 (333)
.+++.+...=..|..+.|-..++ + .-.+.+..++.+++|+.+
T Consensus 35 p~m~~lmllGL~WiVvyYi~~~~i~pi~~lG~WN~~IGfg~~~~Gf~mt 83 (87)
T PF06781_consen 35 PLMLGLMLLGLLWIVVYYISGGQIPPIPDLGNWNLAIGFGLMIVGFLMT 83 (87)
T ss_pred HHHHHHHHHHHHHHhhhhcccCCCCCcccccchHHHHHHHHHHHHHHHH
Confidence 34444444444455555544332 3 334455666666666654
No 22
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=36.39 E-value=96 Score=33.26 Aligned_cols=74 Identities=15% Similarity=0.091 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHhHHHHHHHH-HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCcccCCCCCCCCcccC
Q 019958 42 GLIFKLCLFFAIPYFYLLFY-HYKIESELQRSILINAGLSLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQGTIKV 120 (333)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~l~af~lt~~~~p~~~~~~~r~~l~g~di~k~~~r~h~~~~ 120 (333)
|++.+...+++....|-..+ --+..+...+.+....+-.++-.+++.+....+.++.+.+.. | |-+.|-|.+-+
T Consensus 8 ~l~l~v~a~v~ai~~~~~l~~~t~i~~~~~~~~~~v~vnl~l~l~L~~vi~r~v~~l~~arr~-G----ka~sRLh~Riv 82 (712)
T COG5000 8 RLLLAVAAIVLAIVLCGLLAGTTPISPAFDYILALVAVNLALLLILSAVIGRKVIRLLKARRL-G----KAGSRLHVRIV 82 (712)
T ss_pred chHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C----chHHHHHHHHH
Confidence 56666666777777774444 455555555555555555555666777777777777666653 2 44444466543
No 23
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=32.93 E-value=87 Score=29.89 Aligned_cols=21 Identities=5% Similarity=0.181 Sum_probs=15.7
Q ss_pred CccCcccCCCCCCCCcccCCC
Q 019958 102 NLFGYDINKKGTPQGTIKVPE 122 (333)
Q Consensus 102 ~l~g~di~k~~~r~h~~~~P~ 122 (333)
+..|+|+|+.++|+..+|.|+
T Consensus 60 d~~Dr~iD~~~~RT~~RPL~s 80 (284)
T PRK12888 60 RIIDREIDARNPRTAGRELVT 80 (284)
T ss_pred hHHhhCCCCCCCCCCCCCCCC
Confidence 346888999998876667666
No 24
>PF11391 DUF2798: Protein of unknown function (DUF2798); InterPro: IPR021529 This family of proteins has no known function.
Probab=32.15 E-value=1.9e+02 Score=20.78 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=34.4
Q ss_pred HHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019958 56 FYLLFYHYKIESE-LQRSILINAGLSLAGFFITQKMIPVASRYVLR 100 (333)
Q Consensus 56 ~~~~~~~~~~~~~-~~~~~l~~~~~~l~af~lt~~~~p~~~~~~~r 100 (333)
....+.+....++ .++..-.......+++...++..|..+|+..|
T Consensus 13 ~v~t~~n~G~~~~f~~~Wl~a~~~a~~vAfp~~l~v~P~v~kl~~~ 58 (60)
T PF11391_consen 13 FVMTLLNVGFSDGFFSRWLKAWLIAWPVAFPISLIVAPLVRKLVER 58 (60)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777664 46666667777888999999999999998766
No 25
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=31.14 E-value=71 Score=30.67 Aligned_cols=22 Identities=5% Similarity=0.031 Sum_probs=16.8
Q ss_pred CccCcccCCCCCCCCcccCCCC
Q 019958 102 NLFGYDINKKGTPQGTIKVPES 123 (333)
Q Consensus 102 ~l~g~di~k~~~r~h~~~~P~~ 123 (333)
+++|+|+||.++|+..+|.|++
T Consensus 58 di~Dr~iD~~~~RT~~RPLpsG 79 (286)
T PRK12895 58 RIEGLRYDMINPRKKDWALVSG 79 (286)
T ss_pred hHHHhcccCCCCcCCCCCCCCC
Confidence 4479999999988766676664
No 26
>KOG3462 consensus Predicted membrane protein [Function unknown]
Probab=30.59 E-value=2.2e+02 Score=23.04 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=29.2
Q ss_pred CCCCCCcccHHHHHHHHHHhHHHH-HHHHHh--------ccchHHHHHHHHHHHHHHHHHHHH
Q 019958 34 PPIAPPKSGLIFKLCLFFAIPYFY-LLFYHY--------KIESELQRSILINAGLSLAGFFIT 87 (333)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~l~~~~~~l~af~lt 87 (333)
+|--|+-+|.|+-+.-|.+=.=|| |+.+-. +-.+|. ..+..+..+++-+.+.+
T Consensus 32 ~pdYmn~lgmIfsmcGlM~r~KwCsWlAl~cs~iSfAn~R~seD~-KQi~ssfMlsisavVms 93 (105)
T KOG3462|consen 32 PPDYMNFLGMIFSMCGLMFRLKWCSWLALYCSCISFANSRNSEDA-KQISSSFMLSISAVVMS 93 (105)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH-HHHHHHHHHHHHHHHHH
Confidence 355677888887766666556666 554332 223344 44445555554444433
No 27
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=29.62 E-value=96 Score=29.94 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=16.0
Q ss_pred CccCcccCCCCCCCCcccCCCC
Q 019958 102 NLFGYDINKKGTPQGTIKVPES 123 (333)
Q Consensus 102 ~l~g~di~k~~~r~h~~~~P~~ 123 (333)
+++|+|+|+.++|+.++|.|++
T Consensus 70 d~~D~diD~~~~RT~~RPl~sG 91 (300)
T PRK13106 70 NLADLEIDAKNPRTKNRPLVTG 91 (300)
T ss_pred hhHHhccccCCCccCCCCCCCC
Confidence 4478899998887755666664
No 28
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=28.96 E-value=94 Score=29.76 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=16.0
Q ss_pred CccCcccCCCCCCCCcccCCCC
Q 019958 102 NLFGYDINKKGTPQGTIKVPES 123 (333)
Q Consensus 102 ~l~g~di~k~~~r~h~~~~P~~ 123 (333)
+..|+|+|+.++|...+|+|++
T Consensus 63 d~~D~~iD~~~~RT~~RPL~sG 84 (291)
T PRK12886 63 RLIDAEIDARNPRTAGRAIPAG 84 (291)
T ss_pred hHHhhccCCCCCCCCCCCCCCC
Confidence 4468888998887655677764
No 29
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=26.95 E-value=5e+02 Score=28.65 Aligned_cols=37 Identities=16% Similarity=0.060 Sum_probs=22.7
Q ss_pred HHHcCccCcccCCCCCCCCcccCCCCchHHHHHHHHHHH
Q 019958 98 VLRRNLFGYDINKKGTPQGTIKVPESLGIVVGAVFLVLA 136 (333)
Q Consensus 98 ~~r~~l~g~di~k~~~r~h~~~~P~~GGl~i~~~~li~~ 136 (333)
+.-.|..|.+ ++..++++..+..+||..+..+..++.
T Consensus 434 GLl~G~~G~~--~~~~p~~r~c~~~tGg~~Lm~gv~~~F 470 (806)
T PF05478_consen 434 GLLCGCCGYR--RRADPTDRGCSSNTGGNFLMAGVGLSF 470 (806)
T ss_pred HHHHhhccCC--CCCCCcccCCCCCccHHHHHHHHHHHH
Confidence 3345777743 222233566789999988877765544
No 30
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=26.42 E-value=1.1e+02 Score=29.56 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=14.7
Q ss_pred ccCcccCCCCCCCCcccCCCC
Q 019958 103 LFGYDINKKGTPQGTIKVPES 123 (333)
Q Consensus 103 l~g~di~k~~~r~h~~~~P~~ 123 (333)
++|+|+|+.++|+..+|+|++
T Consensus 66 ~~D~~iD~~~~RT~~RPl~sG 86 (294)
T PRK12873 66 LWDRRIDRKVERTKNRPLARG 86 (294)
T ss_pred HHHHhhccCCCcCCCCCCCCC
Confidence 468888888887755565553
No 31
>PHA00726 hypothetical protein
Probab=25.56 E-value=1.4e+02 Score=23.62 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=13.1
Q ss_pred cccCCCCchHHHHHHHHHHHHH
Q 019958 117 TIKVPESLGIVVGAVFLVLAIL 138 (333)
Q Consensus 117 ~~~~P~~GGl~i~~~~li~~~l 138 (333)
..+-+|.-|.-.+++-+++.++
T Consensus 36 ~~~~~r~iGyYlVissv~aL~v 57 (89)
T PHA00726 36 STLNHRSIGYYLVISSVLALIV 57 (89)
T ss_pred cCCCCcceeeeeHHHHHHHHHH
Confidence 4456677787666665555443
No 32
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=24.87 E-value=2.5e+02 Score=19.58 Aligned_cols=32 Identities=13% Similarity=0.310 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 019958 72 SILINAGLSLAGFFITQKMIPVASRYVLRRNL 103 (333)
Q Consensus 72 ~~l~~~~~~l~af~lt~~~~p~~~~~~~r~~l 103 (333)
.++.+++..++++.++-.....+.|..+|.+.
T Consensus 17 ~iv~AilIl~vG~~va~~v~~~~~~~l~~~~~ 48 (53)
T PF05552_consen 17 NIVGAILILIVGWWVAKFVRKLVRRLLEKRGV 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55677788888888888888899998888884
No 33
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=24.46 E-value=3.6e+02 Score=21.41 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019958 71 RSILINAGLSLAGFFIT 87 (333)
Q Consensus 71 ~~~l~~~~~~l~af~lt 87 (333)
-.+.+..++.+++|+.+
T Consensus 67 WN~~IGFg~~i~G~lmt 83 (87)
T PRK00159 67 WNYAIGFALMITGLLMT 83 (87)
T ss_pred hhHHHHHHHHHHHHHHh
Confidence 34455555555566554
No 34
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=23.34 E-value=1.2e+02 Score=28.50 Aligned_cols=20 Identities=5% Similarity=0.071 Sum_probs=13.1
Q ss_pred cCcccCCCCCCCCcccCCCC
Q 019958 104 FGYDINKKGTPQGTIKVPES 123 (333)
Q Consensus 104 ~g~di~k~~~r~h~~~~P~~ 123 (333)
.|+|+|+.++|+.++|.|++
T Consensus 59 ~D~~~D~~~~Rt~~RPl~sG 78 (282)
T TIGR01475 59 IDRAIDARNPRTKNRPLVSG 78 (282)
T ss_pred HHHcccCCCCccCCCCCCCC
Confidence 56677777776655666553
No 35
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=22.62 E-value=4e+02 Score=25.21 Aligned_cols=60 Identities=18% Similarity=0.097 Sum_probs=38.8
Q ss_pred HHHHHHHHHhHHHHHHHHH--hccchH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 019958 44 IFKLCLFFAIPYFYLLFYH--YKIESE-L-QRSILINAGLSLAGFFITQKMIPVASRYVLRRNL 103 (333)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~--~~~~~~-~-~~~~l~~~~~~l~af~lt~~~~p~~~~~~~r~~l 103 (333)
.+..+.++..|...-.-.. .+..++ . ...+...+..++.||+++++.+..+.|+.+|.++
T Consensus 182 A~~fSFllsiP~ilga~~l~~~~~~~~~~~~~~~~~~~ig~~~afv~g~l~i~~ll~~~~~~~~ 245 (259)
T PF02673_consen 182 AARFSFLLSIPAILGAGLLELKDLFSAGLDSGSWPPLLIGFVVAFVVGYLAIKWLLRFLKRRKL 245 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 4456666666766622211 111111 1 2345566777888999999999999999998886
No 36
>COG3742 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.31 E-value=45 Score=28.34 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=23.0
Q ss_pred HHHHHHhhccc---cCCccccCchhHHHHHH
Q 019958 291 ATSLALFSYNW---YPSSVFVGDTYTYFAGM 318 (333)
Q Consensus 291 gallgFL~fN~---~PAkIFmGDtGS~~lG~ 318 (333)
.+.-+|..|-. |||+.=|||+.||.+--
T Consensus 78 ~A~~A~~rfGKg~~HpA~LN~GDCfsYA~A~ 108 (131)
T COG3742 78 AALRAYRRFGKGRGHPAGLNFGDCFSYALAK 108 (131)
T ss_pred HHHHHHHHhCcCCCCcccccchhHHHHHHHH
Confidence 45667888876 89999999999998753
No 37
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=22.31 E-value=2e+02 Score=27.05 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=15.1
Q ss_pred CccCcccCCCCCCCCcccCCCC
Q 019958 102 NLFGYDINKKGTPQGTIKVPES 123 (333)
Q Consensus 102 ~l~g~di~k~~~r~h~~~~P~~ 123 (333)
+..|+|+|+.++|+.++|+|++
T Consensus 56 d~~D~~iD~~~~Rt~~Rpl~sG 77 (280)
T TIGR01473 56 MYIDRDIDKKMKRTRNRPLVTG 77 (280)
T ss_pred hhcccCcCCCCCCCCCCCCCCC
Confidence 3468888887777655677764
No 38
>PF14163 SieB: Superinfection exclusion protein B
Probab=21.80 E-value=3e+02 Score=23.41 Aligned_cols=55 Identities=15% Similarity=0.027 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019958 43 LIFKLCLFFAIPYFYLLFYHYKIESELQRSILINAGLSLAGFFITQKMIPVASRY 97 (333)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~af~lt~~~~p~~~~~ 97 (333)
++....++++.|..+.......--.+.-++++-.+.++-+|++++.++.......
T Consensus 5 l~i~~~~llf~P~~~~~~l~l~~~~~~y~~~i~~~fl~s~s~li~~~~~~~~~~~ 59 (151)
T PF14163_consen 5 LIIFSGLLLFLPESLLEWLNLDKFEIKYQPWIGLIFLFSVSYLIAQLLSFIYKEA 59 (151)
T ss_pred HHHHHHHHHHCCHHHHHHhCcchHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777788885554432222334555555556667777777777665543
No 39
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=21.07 E-value=7.3e+02 Score=23.65 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=15.6
Q ss_pred CccCcccCCCCCCCCcccCCC
Q 019958 102 NLFGYDINKKGTPQGTIKVPE 122 (333)
Q Consensus 102 ~l~g~di~k~~~r~h~~~~P~ 122 (333)
+..|+|+|+.++|...+|+|+
T Consensus 68 d~~DrdiD~~~~RT~~RPl~s 88 (291)
T PRK12874 68 RLVDRDIDKDNPRTANRPSVD 88 (291)
T ss_pred hhhhhccccCCCCCCCCCCCC
Confidence 457889999988775566666
No 40
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=20.75 E-value=3.6e+02 Score=23.66 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=18.2
Q ss_pred cHHHHHHHHHHhHHHHHHHHHhccchHHHHHHHHHHHH
Q 019958 42 GLIFKLCLFFAIPYFYLLFYHYKIESELQRSILINAGL 79 (333)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (333)
|+...+.+ ..++.+|++..+..+|-..--.++.+++.
T Consensus 70 GiP~~lG~-~~f~~~y~l~~~~~~dvP~~~~~~~S~~~ 106 (153)
T PF11947_consen 70 GIPTALGV-AVFVVFYYLKSRQIVDVPPWAVLLVSLVF 106 (153)
T ss_pred chHHHHHH-HHHHHHHHHHhccccccCchHHHHHHHHH
Confidence 44433333 35677777766655554333333444433
No 41
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=20.18 E-value=1.6e+02 Score=27.87 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=15.5
Q ss_pred CccCcccCCCCCCCCcccCCCC
Q 019958 102 NLFGYDINKKGTPQGTIKVPES 123 (333)
Q Consensus 102 ~l~g~di~k~~~r~h~~~~P~~ 123 (333)
+..|+|+|+.++|..++|.|++
T Consensus 57 d~~D~~iD~~~~Rt~~RPl~sG 78 (279)
T PRK12869 57 HGIERDIDKVMSRTSKRPTPVG 78 (279)
T ss_pred chHhcCCCCCCCCCCCCCcCCC
Confidence 4468888888877656676654
Done!