Query 019958
Match_columns 333
No_of_seqs 209 out of 1309
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 09:39:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019958.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019958hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ls4_A High affinity copper up 32.1 14 0.00048 21.8 0.0 20 285-304 6-25 (26)
2 1s5r_A High mobility group box 12.7 36 0.0012 19.5 -0.3 7 1-7 16-22 (26)
3 2kt5_B ICP27; chaperone, mRNA 11.4 1.6E+02 0.0055 18.8 2.3 8 3-10 12-19 (40)
4 2xq2_A Sodium/glucose cotransp 9.8 9.9E+02 0.034 23.5 9.0 26 87-114 564-589 (593)
5 4dx5_A Acriflavine resistance 5.3 1.5E+03 0.05 23.9 8.2 36 68-103 998-1034(1057)
6 1q90_R Cytochrome B6-F complex 5.0 7.8E+02 0.027 16.3 4.8 28 70-97 11-38 (49)
7 4b4a_A TATC, SEC-independent p 4.7 9.2E+02 0.031 21.2 5.1 32 68-99 9-40 (249)
8 4b4a_A TATC, SEC-independent p 4.2 9.9E+02 0.034 21.0 4.9 58 41-98 65-130 (249)
9 3mi9_C Protein TAT; P-TEFB, HI 4.1 1.9E+02 0.0065 21.8 0.0 32 3-34 53-84 (86)
10 3o7q_A L-fucose-proton symport 3.3 1.7E+03 0.06 19.3 6.0 83 19-101 2-92 (438)
No 1
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=32.06 E-value=14 Score=21.83 Aligned_cols=20 Identities=10% Similarity=0.350 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhccccCC
Q 019958 285 LVQPLLATSLALFSYNWYPS 304 (333)
Q Consensus 285 l~~~l~gallgFL~fN~~PA 304 (333)
+..+.+|+.+|++.|.|.++
T Consensus 6 ~iavvlGa~~Gyf~F~~~~~ 25 (26)
T 2ls4_A 6 CIAVAAGAGTGYFLFSWKKX 25 (26)
Confidence 34567899999999998764
No 2
>1s5r_A High mobility group box transcription factor 1; protein-peptide complex, amphipathic helix motif, four- helix bundle, repressor-corepressor complex, transcription; NMR {Synthetic} SCOP: j.114.1.1
Probab=12.74 E-value=36 Score=19.54 Aligned_cols=7 Identities=57% Similarity=0.828 Sum_probs=3.4
Q ss_pred Chhhccc
Q 019958 1 MAARKRA 7 (333)
Q Consensus 1 ~~~~~~~ 7 (333)
||+|||+
T Consensus 16 mar~r~a 22 (26)
T 1s5r_A 16 MARQRRA 22 (26)
T ss_dssp HHHTTTC
T ss_pred HHHHhhh
Confidence 4555544
No 3
>2kt5_B ICP27; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Human herpesvirus 1}
Probab=11.45 E-value=1.6e+02 Score=18.81 Aligned_cols=8 Identities=38% Similarity=0.476 Sum_probs=3.6
Q ss_pred hhcccccc
Q 019958 3 ARKRASSR 10 (333)
Q Consensus 3 ~~~~~~~~ 10 (333)
+|||+++.
T Consensus 12 ~RR~~s~~ 19 (40)
T 2kt5_B 12 ARRPSCSP 19 (40)
T ss_dssp SCCCCCCC
T ss_pred ccCcCCCc
Confidence 44544433
No 4
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=9.76 E-value=9.9e+02 Score=23.46 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHHHHcCccCcccCCCCCC
Q 019958 87 TQKMIPVASRYVLRRNLFGYDINKKGTP 114 (333)
Q Consensus 87 t~~~~p~~~~~~~r~~l~g~di~k~~~r 114 (333)
+..++-..+|..+|+.- .|...|+++
T Consensus 564 ~~~~~~~~~~~~~~~~~--~~~~~~~~~ 589 (593)
T 2xq2_A 564 TILLISYGIKKLIKASY--KSGGSPGHH 589 (593)
T ss_dssp HHHHHHHHHC------------------
T ss_pred HHHHHHHHHHHHhcCCC--CCCCCCCcc
Confidence 34444444444444442 245556654
No 5
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=5.34 E-value=1.5e+03 Score=23.92 Aligned_cols=36 Identities=19% Similarity=0.087 Sum_probs=25.2
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 019958 68 ELQRSI-LINAGLSLAGFFITQKMIPVASRYVLRRNL 103 (333)
Q Consensus 68 ~~~~~~-l~~~~~~l~af~lt~~~~p~~~~~~~r~~l 103 (333)
+..+++ +..++..+++.++++++.|.+..+..++..
T Consensus 998 ~~~~~~g~~~~~Gl~~s~~~tl~~~P~l~~~~~~~~~ 1034 (1057)
T 4dx5_A 998 GAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRRFS 1034 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344554 344445566899999999999988877653
No 6
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=5.00 E-value=7.8e+02 Score=16.31 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019958 70 QRSILINAGLSLAGFFITQKMIPVASRY 97 (333)
Q Consensus 70 ~~~~l~~~~~~l~af~lt~~~~p~~~~~ 97 (333)
||.++..+..-..++.....+.|.++-+
T Consensus 11 RRqfln~l~~G~~a~~a~~~~~P~v~ff 38 (49)
T 1q90_R 11 KRNIMNLILAGGAGLPITTLALGYGAFF 38 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 8888888887888888888889988765
No 7
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=4.75 E-value=9.2e+02 Score=21.19 Aligned_cols=32 Identities=19% Similarity=0.063 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019958 68 ELQRSILINAGLSLAGFFITQKMIPVASRYVL 99 (333)
Q Consensus 68 ~~~~~~l~~~~~~l~af~lt~~~~p~~~~~~~ 99 (333)
|+|+.++.+++..++++++++....-+..+..
T Consensus 9 ELR~Rli~~~i~~~v~~~~~~~~~~~i~~~l~ 40 (249)
T 4b4a_A 9 ELRYRLIISIIAFLIGSGIAFYFAKYVFEILK 40 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77999999988888888888887766666544
No 8
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=4.18 E-value=9.9e+02 Score=20.96 Aligned_cols=58 Identities=16% Similarity=0.215 Sum_probs=36.4
Q ss_pred ccHHHHHHHHHHhHHHH---HHHHHhccch---HH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 019958 41 SGLIFKLCLFFAIPYFY---LLFYHYKIES---EL-QRSILINAGLSLAGFFITQ-KMIPVASRYV 98 (333)
Q Consensus 41 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~-~~~~l~~~~~~l~af~lt~-~~~p~~~~~~ 98 (333)
+.+....++.+..|++. |.++.=-+-+ .. ..-+..+..+++.+...++ +..|...++.
T Consensus 65 lkvs~~~g~~~a~P~ilyQiw~Fi~PgLy~~Err~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl 130 (249)
T 4b4a_A 65 IKISLAVGFIIASPVILYQFWRFIEPALYSHEKRAFIPLLLGSILLFMLGALFAYFIVLPLALKFL 130 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCTTTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555577788889988 5555533322 22 3344566677777777777 4578887764
No 9
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=4.12 E-value=1.9e+02 Score=21.78 Aligned_cols=32 Identities=9% Similarity=0.227 Sum_probs=0.0
Q ss_pred hhcccccccccccCCCCCCCCCCCCCCCCCCC
Q 019958 3 ARKRASSRAIATATDTDTSKSETPTSQEHADP 34 (333)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (333)
++||+++......+.+.++++.+.+.-.++.|
T Consensus 53 rqRRr~p~~s~~hq~~~~kQp~sq~rg~~tgp 84 (86)
T 3mi9_C 53 RQRRRAHQNSQTHQASLSKQPTSQSRGDPTGP 84 (86)
T ss_dssp --------------------------------
T ss_pred cccCCCCCCCCCCcCcCCcCCCCCCCCCCCCC
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=3.34 E-value=1.7e+03 Score=19.30 Aligned_cols=83 Identities=8% Similarity=0.003 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhHHHHHHHHHhccchHH--------HHHHHHHHHHHHHHHHHHHHH
Q 019958 19 DTSKSETPTSQEHADPPIAPPKSGLIFKLCLFFAIPYFYLLFYHYKIESEL--------QRSILINAGLSLAGFFITQKM 90 (333)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~l~af~lt~~~ 90 (333)
++.++.+++.++.++.....++.........+..+...+-.....++-+.. .+.-+......+...+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~ 81 (438)
T 3o7q_A 2 GNTSIQTQSYRAVDKDAGQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPA 81 (438)
T ss_dssp --------------------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHH
T ss_pred CcccccccccccccccchhhhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred HHHHHHHHHHc
Q 019958 91 IPVASRYVLRR 101 (333)
Q Consensus 91 ~p~~~~~~~r~ 101 (333)
.++..|+-+|+
T Consensus 82 G~l~dr~g~r~ 92 (438)
T 3o7q_A 82 GILMKKLSYKA 92 (438)
T ss_dssp HHHHHHSCHHH
T ss_pred HHHHHHhcchH
Done!