Query 019958
Match_columns 333
No_of_seqs 209 out of 1309
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 09:39:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019958.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019958hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54l_ f.23.6.1 (L:) Mitochon 10.5 99 0.0072 19.0 2.8 29 37-65 14-43 (46)
2 d2cbia2 c.1.8.10 (A:179-495) H 5.5 70 0.0051 27.6 0.3 15 296-310 214-233 (317)
3 d2choa2 c.1.8.10 (A:127-436) G 5.4 72 0.0052 27.4 0.3 15 296-310 209-228 (310)
4 d2gqba1 a.282.1.1 (A:1-130) Hy 4.4 3.7E+02 0.027 19.8 3.9 15 35-49 41-55 (130)
5 d2vv5a3 f.34.1.1 (A:27-112) Me 4.2 4.8E+02 0.035 16.7 5.1 29 74-102 6-34 (86)
6 d1x6aa2 g.39.1.3 (A:42-75) Lim 4.1 28 0.0021 20.2 -2.3 12 304-315 6-17 (34)
7 d1q79a1 a.160.1.1 (A:215-364) 3.0 6.2E+02 0.045 18.7 4.2 27 91-129 10-36 (150)
8 d1x7fa2 c.1.8.12 (A:1-244) Out 2.6 1.8E+02 0.013 23.9 0.4 9 297-305 145-153 (244)
9 d1pv7a_ f.38.1.2 (A:) Lactose 2.6 2.5E+02 0.018 21.9 1.4 19 84-102 269-287 (417)
10 d2q66a1 a.160.1.1 (A:202-351) 2.5 6.6E+02 0.048 18.6 3.8 28 90-129 9-36 (150)
No 1
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.46 E-value=99 Score=18.96 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=20.0
Q ss_pred CCCcccHHHHHHHHHHhHHHH-HHHHHhcc
Q 019958 37 APPKSGLIFKLCLFFAIPYFY-LLFYHYKI 65 (333)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 65 (333)
-.||+.+.+.+.+.|-..+.. .+++|.++
T Consensus 14 v~Nk~rLla~m~~~fGsgfa~PF~ivRhqL 43 (46)
T d1v54l_ 14 VENKWRLLAMMTLFFGSGFAAPFFIVRHQL 43 (46)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 457888888777777776666 66666554
No 2
>d2cbia2 c.1.8.10 (A:179-495) Hyaluronidase catalytic domain {Clostridium perfringens [TaxId: 1502]}
Probab=5.46 E-value=70 Score=27.60 Aligned_cols=15 Identities=13% Similarity=0.259 Sum_probs=13.3
Q ss_pred Hhhcccc-----CCccccCc
Q 019958 296 LFSYNWY-----PSSVFVGD 310 (333)
Q Consensus 296 FL~fN~~-----PAkIFmGD 310 (333)
++|.||| |.|+|||.
T Consensus 214 ~iWDNypvNDy~~~rL~lGp 233 (317)
T d2cbia2 214 AVWWNYPVTDYFKGKLALGP 233 (317)
T ss_dssp EEEECCSCCTTSTTSCCCCC
T ss_pred eEEeCccccCCCCCceeecC
Confidence 8999997 88999995
No 3
>d2choa2 c.1.8.10 (A:127-436) Glucosaminidase GH84, catalytic domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=5.36 E-value=72 Score=27.38 Aligned_cols=15 Identities=13% Similarity=0.379 Sum_probs=13.4
Q ss_pred Hhhcccc-----CCccccCc
Q 019958 296 LFSYNWY-----PSSVFVGD 310 (333)
Q Consensus 296 FL~fN~~-----PAkIFmGD 310 (333)
++|.|+| |.|+|||.
T Consensus 209 ~iWDNypvNDy~~~rL~lGp 228 (310)
T d2choa2 209 YIWWNFPVSDYVRDHLLLGP 228 (310)
T ss_dssp EEEECCSCCTTSTTCCCCSC
T ss_pred eEEEcccccCCCcCceEecc
Confidence 7899997 88999996
No 4
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=4.45 E-value=3.7e+02 Score=19.81 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=7.8
Q ss_pred CCCCCcccHHHHHHH
Q 019958 35 PIAPPKSGLIFKLCL 49 (333)
Q Consensus 35 ~~~~~~~~~~~~~~~ 49 (333)
+.+.+.+-+.+++--
T Consensus 41 ~~~~~~VDV~aiLd~ 55 (130)
T d2gqba1 41 PTAAPSIDVAPILDK 55 (130)
T ss_dssp CCCCSSEECHHHHHH
T ss_pred CCCCCcccHHHHHHH
Confidence 444556666555443
No 5
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=4.22 E-value=4.8e+02 Score=16.67 Aligned_cols=29 Identities=14% Similarity=0.386 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 019958 74 LINAGLSLAGFFITQKMIPVASRYVLRRN 102 (333)
Q Consensus 74 l~~~~~~l~af~lt~~~~p~~~~~~~r~~ 102 (333)
+.++....++..+.-.....+.|..+|++
T Consensus 6 l~~l~il~i~~~i~~~i~~~~~~~~~~~~ 34 (86)
T d2vv5a3 6 VAALAIIIVGLIIARMISNAVNRLMISRK 34 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444444555555555556655555443
No 6
>d1x6aa2 g.39.1.3 (A:42-75) Lim domain kinase 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.15 E-value=28 Score=20.20 Aligned_cols=12 Identities=25% Similarity=0.384 Sum_probs=8.7
Q ss_pred CccccCchhHHH
Q 019958 304 SSVFVGDTYTYF 315 (333)
Q Consensus 304 AkIFmGDtGS~~ 315 (333)
-|+|.||.-||.
T Consensus 6 C~~fIgdgdsya 17 (34)
T d1x6aa2 6 CKVIIEDGDAYA 17 (34)
T ss_dssp TCCBCCTTSCEE
T ss_pred cccEEecCceEE
Confidence 478999876653
No 7
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.00 E-value=6.2e+02 Score=18.72 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCccCcccCCCCCCCCcccCCCCchHHHH
Q 019958 91 IPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVG 129 (333)
Q Consensus 91 ~p~~~~~~~r~~l~g~di~k~~~r~h~~~~P~~GGl~i~ 129 (333)
...++.+++|+|+++ ++-|. .||+...
T Consensus 10 lR~IKlWAk~RGIYs---n~~Gf---------lGGI~wa 36 (150)
T d1q79a1 10 LRAIKLWAKRHNIYS---NILGF---------LGGVSWA 36 (150)
T ss_dssp HHHHHHHHHHTTCBC---TTTTS---------BCHHHHH
T ss_pred HHHHHHHHHHccccc---ccccc---------cHHHHHH
Confidence 455677899999875 44444 4787653
No 8
>d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]}
Probab=2.64 E-value=1.8e+02 Score=23.95 Aligned_cols=9 Identities=33% Similarity=0.585 Sum_probs=6.8
Q ss_pred hhccccCCc
Q 019958 297 FSYNWYPSS 305 (333)
Q Consensus 297 L~fN~~PAk 305 (333)
-+||+||.+
T Consensus 145 acHNFYPr~ 153 (244)
T d1x7fa2 145 GCHNFYPQK 153 (244)
T ss_dssp EECCCBCST
T ss_pred EeeccCCCC
Confidence 479999854
No 9
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=2.63 E-value=2.5e+02 Score=21.93 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHcC
Q 019958 84 FFITQKMIPVASRYVLRRN 102 (333)
Q Consensus 84 f~lt~~~~p~~~~~~~r~~ 102 (333)
.+..........++.+|.+
T Consensus 269 ~~~~~~~~~~~~~l~~r~~ 287 (417)
T d1pv7a_ 269 ELLNASIMFFAPLIINRIG 287 (417)
T ss_dssp HHHHHHHHTTHHHHHHHHC
T ss_pred ccccccchhhhhhhhcccc
Confidence 3334444444555544444
No 10
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.52 E-value=6.6e+02 Score=18.56 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCccCcccCCCCCCCCcccCCCCchHHHH
Q 019958 90 MIPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVG 129 (333)
Q Consensus 90 ~~p~~~~~~~r~~l~g~di~k~~~r~h~~~~P~~GGl~i~ 129 (333)
....++.+++|+|+++ ++-|. .||+...
T Consensus 9 alR~IK~WAk~RGIYs---n~~Gy---------lGGI~wa 36 (150)
T d2q66a1 9 ALRAIKLWAQRRAVYA---NIFGF---------PGGVAWA 36 (150)
T ss_dssp HHHHHHHHHHHTTCCC---GGGTS---------CCHHHHH
T ss_pred HHHHHHHHHHHccccc---ccccc---------cHHHHHH
Confidence 3456677899999875 44443 4787653
Done!