BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019959
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXX 73
NG +++L++GDSGVGK+ L+ V+ TIG +K +
Sbjct: 13 NGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVK-- 70
Query: 74 XXXXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
++LWD +G ER++ + Y G+I V+D++ RT T++++W
Sbjct: 71 -----------LQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQW 114
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXER 81
+++L++G+SGVGK+SL+ + + TIG VK I+
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAK---------- 65
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGT 137
+ +WD +G ER++ Y GVI V+D+++R T L W E+ T T
Sbjct: 66 ---LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT 118
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 13/112 (11%)
Query: 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXX 76
P +++V+++G GVGKTSL+ + T+G +K +
Sbjct: 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRG--------- 72
Query: 77 XXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+ +++WD +G ER+ S Y G+I V+D++++ T L KW
Sbjct: 73 ----KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKW 120
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 13/107 (12%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXER 81
+++L++GDSGVGK+ L+ V+ TIG +K +
Sbjct: 8 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVK---------- 57
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
++LWD +G ER++ + Y G+I V+D++ RT T++++W
Sbjct: 58 ---LQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQW 101
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++L++GDSGVGK+ L+ V+ TIG +K +
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVK----------- 53
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
++LWD +G ER++ + Y G+I V+D++ RT T++++W
Sbjct: 54 --LQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQW 97
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 13/107 (12%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXER 81
+++L++GDSGVGK+ L+ V+ TIG +K +
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVK---------- 53
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+++WD +G ER++ + Y G+I V+D++ RT T++++W
Sbjct: 54 ---LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQW 97
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++L++GDSGVGK+ L+ V+ TIG +K +
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVK----------- 53
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+++WD +G ER++ + Y G+I V+D++ RT T++++W
Sbjct: 54 --LQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQW 97
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 12/110 (10%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+++++GDSGVGK++L++ + TIG K I
Sbjct: 9 KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIK---------- 58
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
++WD +G ERY+ S Y G + V+D++++ + +++KW E+
Sbjct: 59 --AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKEL 106
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 13/116 (11%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
+++V ++GD+GVGK+S+V V+ S + TIG + K + Y E
Sbjct: 5 ELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQN------------E 52
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSG 136
F+ +WD +G ER++ + Y I V+D+++ T ++L+ W E+ G
Sbjct: 53 LHKFL-IWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG 107
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+V+++G+SGVGKT+L++ + + FS S+T T+GV+ T
Sbjct: 27 KVVLIGESGVGKTNLLSRFTR-NEFSHDSRT---TIGVEFSTRTVMLGTAAVKA------ 76
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
++WD +G ERY+ S Y G + V DL++ +T +++W E+
Sbjct: 77 ---QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKEL 123
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+V+++G+SGVGKT+L++ + + FS S+T T+GV+ T
Sbjct: 12 KVVLIGESGVGKTNLLSRFTR-NEFSHDSRT---TIGVEFSTRTVMLGTAAVKA------ 61
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
++WD +G ERY+ S Y G + V DL++ +T +++W E+
Sbjct: 62 ---QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKEL 108
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXER 81
++V+++GDSGVGKTSL+N V ++ TIG K + +R
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM-------------VDDR 55
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+++WD +G ER++ Y + + V D++ T +L W
Sbjct: 56 LVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSW 102
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXER 81
++V+++GDSGVGKTSL+N V ++ TIG K + +R
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM-------------VDDR 55
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+++WD +G ER++ Y + + V D++ T +L W
Sbjct: 56 LVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSW 102
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 14/127 (11%)
Query: 8 RENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXX 67
REN G ++L++G+S VGKTS + + T+G VK +
Sbjct: 11 RENLYFQGNFDY-MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTV---- 65
Query: 68 XXXXXXXXXXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQK 127
E+ +++WD +G ERY+ + Y G I ++D++ + ++Q
Sbjct: 66 ---------YRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD 116
Query: 128 WAVEIAT 134
WA +I T
Sbjct: 117 WATQIKT 123
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXER 81
++V+++GDSGVGKTSL+N V ++ TIG K + +R
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM-------------VDDR 55
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+++WD +G ER++ Y + + V D++ T +L W
Sbjct: 56 LVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSW 102
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+V+++GDSGVGK++L++ + TIG + I +
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG-------------KT 77
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
++WD +G ERY+ S Y G + V+D+++ T ++++W E+
Sbjct: 78 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL 127
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 13/112 (11%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
Q +++++G+S VGK+SLV VKG TIG + +
Sbjct: 8 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVK--------- 58
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
E+WD +G ERY + Y I V+D++ + T + W E+
Sbjct: 59 ----FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKEL 106
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++L++GDSGVGK+ L+ + TIG ++ I+
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVK----------- 59
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+++WD +G ER++ S Y +G+I V+D++ R + ++++W EI
Sbjct: 60 --LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEI 107
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+V+++GDSGVGK++L++ + TIG + I +
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG-------------KT 53
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
++WD +G ERY+ S Y G + V+D+++ T ++++W E+
Sbjct: 54 IKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL 103
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 13/121 (10%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G +++V ++GD+GVGK+S++ V+ S + TIG + K + Y
Sbjct: 1 GSALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQN-------- 52
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATS 135
E F+ +WD +G ER++ + Y I V+D+++ T ++L+ W E+
Sbjct: 53 ----ELHKFL-IWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH 107
Query: 136 G 136
G
Sbjct: 108 G 108
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXER 81
++V+++GDSGVGKTSL+N V ++ TIG K + +R
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM-------------VDDR 55
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+++WD +G ER++ Y + + V D++ T +L W
Sbjct: 56 LVTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSW 102
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+V+++GDSGVGK++L++ + TIG + I +
Sbjct: 22 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG-------------KT 68
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
++WD +G ERY+ S Y G + V+D+++ T ++++W E+
Sbjct: 69 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL 118
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+V+++GDSGVGK++L++ + TIG + I +
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG-------------KT 77
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
++WD +G ERY+ S Y G + V+D+++ T ++++W E+
Sbjct: 78 IKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL 127
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++L++GDSGVGK+ L+ + TIG ++ I +
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG-------------KT 57
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+++WD +G ER++ S Y +G+I V+D++ + + ++++W EI
Sbjct: 58 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI 107
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++L++GDSGVGK+ L+ + TIG ++ I +
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG-------------KT 64
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+++WD +G ER++ S Y +G+I V+D++ + + ++++W EI
Sbjct: 65 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 114
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++L++GDSGVGK+SL+ + TIG ++ +
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVK----------- 59
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+++WD +G ER++ S Y +GVI V+D++ + ++++W EI
Sbjct: 60 --LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI 107
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++L++G+S VGKTS + S T+G VK I ++
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI-------------YRNDKR 53
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIAT 134
+++WD +G ERY+ + Y G I ++D++ + ++Q W+ +I T
Sbjct: 54 IKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT 105
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 13/117 (11%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G Q +++++G+S VGK+SLV VKG TIG + +
Sbjct: 2 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVK---- 57
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
E+WD +G ERY + Y I V+D++ + + W E+
Sbjct: 58 ---------FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL 105
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 13/117 (11%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G Q +++++G+S VGK+SLV VKG TIG + +
Sbjct: 1 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVK---- 56
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
E+WD +G ERY + Y I V+D++ + + W E+
Sbjct: 57 ---------FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL 104
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++L++GDSGVGK+ L+ + TIG ++ I +
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG-------------KT 57
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+++WD +G ER++ S Y +G+I V+D++ + + ++++W EI
Sbjct: 58 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI 107
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+++++GDSGVGK++L++ K + F+ S++ T+GV+ T +
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTK-NEFNMDSKS---TIGVEFATRTLEIEG---------KR 61
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
++WD +G ERY+ S Y G + V+D+S+ + + W E+
Sbjct: 62 IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSEL 111
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+V+++GDSGVGK++L++ + TIG + I +
Sbjct: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG-------------KT 59
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
++WD +G ERY+ S Y G + V+D+++ T ++++W E+
Sbjct: 60 IKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL 109
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++L++GDSGVGK+ L+ + TIG ++ I +
Sbjct: 35 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG-------------KT 81
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+++WD +G ER++ S Y +G+I V+D++ + + ++++W EI
Sbjct: 82 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 131
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+V+++GDSGVGK++L++ + TIG + I +
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI-------------QVDGKT 53
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
++WD +G ERY+ S Y G + V+D+++ T ++++W E+
Sbjct: 54 IKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL 103
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+V+++GDSGVGK++L++ + TIG + I +
Sbjct: 10 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG-------------KT 56
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
++WD +G ERY+ S Y G + V+D+++ T ++++W E+
Sbjct: 57 IKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL 106
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 13/112 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++L++G+S VGKTS + S T+G VK I ++
Sbjct: 10 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI-------------YRNDKR 56
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIAT 134
+++WD +G ERY+ + Y G I +D++ + ++Q W+ +I T
Sbjct: 57 IKLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKT 108
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++L++GDSGVGK+ L+ + TIG ++ I +
Sbjct: 27 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG-------------KT 73
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+++WD +G ER++ S Y +G+I V+D++ + + ++++W EI
Sbjct: 74 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 123
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++++VGD+ VGKT +V G+ R TIG +K +
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVK----------- 79
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+++WD +G ER++ Y NG I +D+++R + S+ W ++
Sbjct: 80 --LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDV 127
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++L++G+S VGKTS + S T+G VK + ++
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTV-------------YRHDKR 70
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIAT 134
+++WD +G ERY+ + Y G + ++D++ + + ++Q WA +I T
Sbjct: 71 IKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKT 122
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++L++GDSGVGK+ L+ + TIG ++ I +
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG-------------KT 56
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+++WD +G ER++ S Y +G+I V+D++ + + ++++W EI
Sbjct: 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 106
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++L++GDSGVGK+ L+ + TIG ++ I +
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG-------------KT 54
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+++WD +G ER++ S Y +G+I V+D++ + + ++++W EI
Sbjct: 55 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 104
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++L++GDSGVGK L+ + TIG ++ I +
Sbjct: 18 KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDG-------------KT 64
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+++WD +G ER++ S Y +G+I V+D++ + + ++++W EI
Sbjct: 65 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 114
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++L++GDSGVGK+ L+ + TIG ++ I
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK----------- 56
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+++WD +G ER++ S Y +G+I V+D++ + + ++++W EI
Sbjct: 57 --LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 104
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 13/117 (11%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G Q +++++G+S VGK+SLV VKG TIG + +
Sbjct: 1 GNKICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVK---- 56
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
E+WD +G ERY + Y I V+D++ + + W E+
Sbjct: 57 ---------FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL 104
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 13/117 (11%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G Q +++++G+S VGK+SLV VKG TIG + +
Sbjct: 1 GNKICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVK---- 56
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
E+WD +G ERY + Y I V+D++ + + W E+
Sbjct: 57 ---------FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL 104
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 13/112 (11%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
Q +++++G+S VGK+SLV VKG TIG + +
Sbjct: 3 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVK--------- 53
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
E+WD +G ERY + Y I V+D++ T + W E+
Sbjct: 54 ----FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKEL 101
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 13/117 (11%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G Q +++++G+S VGK+SLV VKG TIG + +
Sbjct: 2 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVK---- 57
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
E+WD +G ERY Y I V+D++ + + W E+
Sbjct: 58 ---------FEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKEL 105
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G +++V ++GD+GVGK+S+V V+ S TIG + K +
Sbjct: 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVP----------- 66
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATS 135
E F+ +WD +G ER+ + Y + V+D++++ + +L+KW E+
Sbjct: 67 -CGNELHKFL-IWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEH 124
Query: 136 G 136
G
Sbjct: 125 G 125
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++L++GDSGVGK+ L+ + TIG ++ I +
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG-------------KT 47
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+++WD +G ER++ S Y +G+I V+D++ + + ++++W EI
Sbjct: 48 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 97
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 13/117 (11%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G Q +++++G+S VGK+SLV VKG TIG + +
Sbjct: 1 GNKICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVK---- 56
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
E+WD +G ERY + Y I V+D++ + + W E+
Sbjct: 57 ---------FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL 104
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 13/117 (11%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G Q +++++G+S VGK+SLV VKG TIG + +
Sbjct: 1 GNKICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVK---- 56
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
E+WD +G ERY + Y I V+D++ + + W E+
Sbjct: 57 ---------FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL 104
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXER 81
++ L +GDSGVGKTS++ G S+ T+G K + Y +
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRG---Q 68
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
++LWD +G ER++ + + G + + DL+ ++ +++ W ++
Sbjct: 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQL 119
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 13/106 (12%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+ +++GD GVGK+ L++ + + TIG G + I +
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII-------------EVSGQK 63
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+++WD +G ER++ Y G + V+D+++R T L W
Sbjct: 64 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW 109
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 13/106 (12%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+ LV+G++G GK+ L++ ++ + TIG G K I
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK----------- 60
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+++WD +G ER++ Y G + V+D++ R T +L W
Sbjct: 61 --LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW 104
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 13/117 (11%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G Q +++++G+S VGK+SLV VKG TIG + +
Sbjct: 1 GNKICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVK---- 56
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
E+WD +G ERY + Y I V+D++ + + W E+
Sbjct: 57 ---------FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL 104
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXER 81
++V+++GDSGVGKTSL++ V + TIG K +T
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVAT--------- 59
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+++WD +G ER++ Y + + V+D++ + +++ W
Sbjct: 60 ---MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSW 103
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+ LV+G++G GK+ L++ ++ + TIG G K I
Sbjct: 13 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK----------- 61
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVE 131
+++WD +G ER++ Y G + V+D++ R T +L W +
Sbjct: 62 --LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTD 108
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 13/112 (11%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
Q +++++G+S VGK+SLV VKG TIG + +
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVK--------- 55
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
E+WD +G ERY + Y I V+D++ T + W E+
Sbjct: 56 ----FEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKEL 103
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 13/112 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+ LV+G +G GK+ L++ ++ + TIG G + +
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVK----------- 75
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIAT 134
+++WD +G ER++ Y G + V+D++ R T SL W + T
Sbjct: 76 --LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDART 125
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 13/112 (11%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
Q +++++G+S VGK+SLV VKG TIG + +
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVK--------- 55
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
E+WD +G ERY + Y I V+D++ + + W E+
Sbjct: 56 ----FEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL 103
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+++++G++GVGKT LV +G P Q G T+GV +
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQG--LFPPGQ--GATIGVDFMIKTVEINGEKVK------- 76
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+++WD +G ER++ Y N +I +D++ + L +W EI
Sbjct: 77 --LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREI 124
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 23/127 (18%)
Query: 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGC-----TVGVKHITYXXXX 69
G + +++++GD G GK+SLV VK TIG T+ V T
Sbjct: 6 AGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK--- 62
Query: 70 XXXXXXXXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWA 129
E+WD +G ERY + Y I V D++ + + +KW
Sbjct: 63 ---------------FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWV 107
Query: 130 VEIATSG 136
E+ G
Sbjct: 108 QELQAQG 114
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 18/112 (16%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+++V+GDS VGKT L G R TIG + +
Sbjct: 22 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIK----------- 70
Query: 83 FFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVE 131
++LWD +G ER++ +S++ Y ++ V+FV+D++ + SL W E
Sbjct: 71 --IQLWDTAGQERFR--KSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEE 118
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 13/106 (12%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+ LV+G++G GK+ L++ ++ + TIG G K I
Sbjct: 10 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK----------- 58
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+++WD +G ER++ Y G + V+D++ R T +L W
Sbjct: 59 --LQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW 102
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 12/110 (10%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+V++VGDSGVGKT L +V+ + + T TVG+
Sbjct: 12 KVMLVGDSGVGKTCL---LVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVK------- 61
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+++WD +G ER++ Y + ++ ++D++ + + ++Q W EI
Sbjct: 62 --LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEI 109
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+++++GDSGVGK++L++ TIG + I +
Sbjct: 12 KIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTI-------------EVENKK 58
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
++WD +G ERY+ S Y G + V+D+S+ + + W E+
Sbjct: 59 IKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTEL 108
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 8 RENKELNGGPP---TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHIT 64
REN G P + ++++VGD GKT+++ ++ K +T TV +
Sbjct: 11 RENLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCY----PETYVPTVFENY-- 64
Query: 65 YXXXXXXXXXXXXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRT-KT 123
E+ + LWD SG Y + R + YS + V+ D+S+ T +
Sbjct: 65 --------TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDS 116
Query: 124 SLQKWAVEI 132
+L+KW EI
Sbjct: 117 ALKKWRTEI 125
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 24 VLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERDF 83
+L++GDSGVGK+ L+ + TIG ++ I +
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG-------------KTI 47
Query: 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+++WD +G ER++ S Y +G+I V+D++ + + ++++W EI
Sbjct: 48 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 96
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 13/111 (11%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXER 81
++V+++GD GVGK+SL+N V S+ TIG + + R
Sbjct: 8 LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDG-------------R 54
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+++WD +G ER+K R+ Y + + + R++ +L W E
Sbjct: 55 FVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEF 105
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXER 81
+++L +GDSGVGKT+ + + T+G K + Y
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
++LWD +G ER++ + + G + + DL+ +++ +++ W ++
Sbjct: 86 ---LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL 133
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++L++GDSGVGKT ++ + + S TIG ++ I
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIK----------- 58
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+++WD +G ER++ + Y G++ V+D++ ++ +++ W
Sbjct: 59 --LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++L++GDSGVGKT ++ + + S TIG ++ I
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIK----------- 56
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+++WD +G ER++ + Y G++ V+D++ ++ +++ W
Sbjct: 57 --LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 100
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
Q +++++G+S VGK+SLV VKG TI + +
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVK--------- 55
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
E+WD +G ERY + Y I V+D++ T + W E+
Sbjct: 56 ----FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKEL 103
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 18/112 (16%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+++V+GDS VGKT L G R TIG + +
Sbjct: 31 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIK----------- 79
Query: 83 FFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVE 131
++LWD +G ER++ +S++ Y ++ V+FV+D + + SL W E
Sbjct: 80 --IQLWDTAGQERFR--KSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEE 127
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 13/106 (12%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+ +++GD GVGK+ L++ + + TIG G + I +
Sbjct: 32 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII-------------EVSGQK 78
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+++WD +G R++ Y G + V+D+++R T L W
Sbjct: 79 IKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW 124
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXER 81
+++L +GDSGVGKT+ + + T+G K + Y
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFK-- 69
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
++LWD +G ER++ + + G + + DL+ +++ +++ W ++
Sbjct: 70 -VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL 119
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXER 81
+++L +GDSGVGKT+ + + T+G K + Y
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
++LWD +G ER++ + + G + + DL+ +++ +++ W ++
Sbjct: 72 ---LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL 119
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++L++G+SGVGK+ L+ + + TIG +K +
Sbjct: 23 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVK----------- 71
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+++WD +G ER++ S Y +G+I V+D++ + + ++ W EI
Sbjct: 72 --LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI 119
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++L++G+SGVGK+ L+ + + TIG +K +
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVK----------- 58
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+++WD +G ER++ S Y +G+I V+D++ + + ++ W EI
Sbjct: 59 --LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI 106
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXER 81
+++L +GDSGVGKT+ + + T+G K + Y
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
++LWD +G ER++ + + G + DL+ +++ +++ W ++
Sbjct: 72 ---LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQL 119
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXER 81
+++L +GDSGVGKT+ + + T+G K + Y
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
++LWD +G ER++ + + G + DL+ +++ +++ W ++
Sbjct: 72 ---LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQL 119
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++L++G+SGVGK+ L+ + + TIG +K +
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVK----------- 58
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+++WD +G ER++ S Y +G+I V+D++ + + ++ W EI
Sbjct: 59 --LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI 106
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 14/111 (12%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKH-ITYXXXXXXXXXXXXXXER 81
++ ++GD GVGKT+ +N ++ G + T+G V H +T+
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVG---AVNHPVTFLDDQGNVIK------- 62
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+WD +G E+ + + Y +G I D++ R T +L +W E
Sbjct: 63 ---FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEF 110
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXX 76
P + ++++VGD GKT+++ ++ K +T TV +
Sbjct: 7 PVVARCKLVLVGDVQCGKTAMLQVLAKDCY----PETYVPTVFENY----------TACL 52
Query: 77 XXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRT-KTSLQKWAVEI 132
E+ + LWD SG Y + R + YS + V+ D+S+ T ++L+KW EI
Sbjct: 53 ETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI 109
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXX 76
P + ++++VGD GKT+++ ++ K +T TV +
Sbjct: 6 PVVARCKLVLVGDVQCGKTAMLQVLAKDCY----PETYVPTVFENY----------TACL 51
Query: 77 XXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRT-KTSLQKWAVEI 132
E+ + LWD SG Y + R + YS + V+ D+S+ T ++L+KW EI
Sbjct: 52 ETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI 108
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 13/113 (11%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G P Q ++++VGD G GKT+ V + G S + T+G V V + +
Sbjct: 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLG--VEVHPLVFHTNRGPIK-- 65
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+WD +G E++ R Y Q I + D++ R T ++ W
Sbjct: 66 ---------FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 109
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++++ GD+ VGK+S + + K S T+G +K + ER
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDG------------ERT 77
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
++LWD +G ER++ + + +GV+ ++D++ ++ ++++W
Sbjct: 78 V-LQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREW 122
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G P Q ++++VGD G GKT+ V + G + T+G V V + +
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--VEVHPLVFHTNRGPIK-- 60
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+WD +G E+Y R Y Q I + D++ R T ++ W
Sbjct: 61 ---------FNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 104
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 13/106 (12%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+ +++GD+GVGK+ L+ TIG G + IT +
Sbjct: 12 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDG-------------KQ 58
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+++WD +G E ++ Y G + V+D+++R T L W
Sbjct: 59 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTW 104
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+++++GD GVGK+SL+N V S+ TIG K +
Sbjct: 13 KIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVT----------- 61
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+++WD +G ER++ R+ Y + + + ++ +L W E
Sbjct: 62 --MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEF 109
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G P Q ++++VGD G GKT+ V + G + T+G V V + +
Sbjct: 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--VEVHPLVFHTNRGPIK-- 65
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+WD +G E++ R Y Q I + D++ R T ++ W
Sbjct: 66 ---------FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 109
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G P Q ++++VGD G GKT+ V + G + T+G V V + +
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--VEVHPLVFHTNRGPIK-- 60
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+WD +G E++ R Y Q I + D++ R T ++ W
Sbjct: 61 ---------FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 104
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G P Q ++++VGD G GKT+ V + G + T+G V V + +
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--VEVHPLVFHTNRGPIK-- 60
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+WD +G E++ R Y Q I + D++ R T ++ W
Sbjct: 61 ---------FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 104
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G P Q ++++VGD G GKT+ V + G + T+G V V + +
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLG--VEVHPLVFHTNRGPIK-- 60
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+WD +G E++ R Y Q I + D++ R T ++ W
Sbjct: 61 ---------FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 104
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+V+++GD GVGK+SL+N V ++ TIG K +
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVT----------- 57
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+++WD +G ER++ R+ Y + + + ++ +L W E
Sbjct: 58 --MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEF 105
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+V+++GD GVGK+SL+N V ++ TIG K +
Sbjct: 11 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVT----------- 59
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+++WD +G ER++ R+ Y + + + ++ +L W E
Sbjct: 60 --MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEF 107
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G P Q ++++VGD G GKT+ V + G + T+G V V + +
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--VEVHPLVFHTNRGPIK-- 60
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+WD +G E++ R Y Q I + D++ R T ++ W
Sbjct: 61 ---------FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 104
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 13/113 (11%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G P Q ++++VGD G GKT+ V + G + T+G V V + +
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--VEVHPLVFHTNRGPIK-- 60
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+WD +G E++ R Y Q I D++ R T ++ W
Sbjct: 61 ---------FNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNW 104
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G P Q ++++VGD G GKT+ V + G + T+G V V + +
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--VEVHPLVFHTNRGPIK-- 60
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+WD +G E++ R Y Q I + D++ R T ++ W
Sbjct: 61 ---------FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 104
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G P Q ++++VGD G GKT+ V + G + T+G V V + +
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLG--VEVHPLVFHTNRGPIK-- 60
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+WD +G E++ R Y Q I + D++ R T ++ W
Sbjct: 61 ---------FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 104
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXER 81
++++++G++ VGK+S+V V TIG + +T E
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTIN-------------EH 50
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
E+WD +G ER+ Y + V+D+++ ++ + W E+
Sbjct: 51 TVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKEL 101
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 13/106 (12%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+ +++GD+GVGK+ L+ TIG G + + +
Sbjct: 23 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDG-------------KQ 69
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+++WD +G E ++ Y G + V+D+++R T L W
Sbjct: 70 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSW 115
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 13/117 (11%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G +V+++G+ VGKTSLV + + T+G + K +
Sbjct: 1 GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVN---- 56
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+ +WD +G ER+ I Y NG I V+D++ + ++ W E+
Sbjct: 57 ---------LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL 104
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 19/122 (15%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G P + +++ +G+ VGKTSL+ + SF Q T+G+ ++
Sbjct: 1 GSPLRKFKLVFLGEQSVGKTSLITRFMY-DSFDNTYQ---ATIGIDFLS---------KT 47
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQIN---GVIFVHDLSQRRTKTSLQKWAVEI 132
+R ++LWD +G ER+ RS++ S I + V+D++ + KW ++
Sbjct: 48 MYLEDRTIRLQLWDTAGQERF---RSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV 104
Query: 133 AT 134
T
Sbjct: 105 RT 106
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G P Q ++++VGD G GKT+ V + G + T+G V V + +
Sbjct: 7 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--VEVHPLVFHTNRGPIK-- 62
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+WD +G E++ R Y Q I + D++ R T ++ W
Sbjct: 63 ---------FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 106
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G P Q ++++VGD G GKT+ V + G + T+G V V + +
Sbjct: 1 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--VEVHPLVFHTNRGPIK-- 56
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+WD +G E++ R Y Q I + D++ R T ++ W
Sbjct: 57 ---------FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 100
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 13/113 (11%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G P Q ++++VGD G GKT+ V + G + T+G V V + +
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--VEVHPLVFHTNRGPIK-- 60
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+WD +G E++ Y Q I + D++ R T ++ W
Sbjct: 61 ---------FNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNW 104
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+V+++G+ VGKTSLV L + F+ KHIT +R
Sbjct: 22 KVVLLGEGCVGKTSLV-LRYCENKFND-----------KHITTLQASFLTKKLNIGGKR- 68
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+ +WD +G ER+ I Y NG I V+D++ + ++ W E+
Sbjct: 69 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL 118
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G +V+++G+ VGKTSLV L + F+ KHIT
Sbjct: 1 GSRAYSFKVVLLGEGCVGKTSLV-LRYCENKFND-----------KHITTLQASFLTKKL 48
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+R + +WD +G ER+ I Y NG I V+D++ + ++ W E+
Sbjct: 49 NIGGKR-VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL 104
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 19/122 (15%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G P + +++ +G+ VGKTSL+ + SF Q T+G+ ++
Sbjct: 9 GNPLRKFKLVFLGEQSVGKTSLITRFMY-DSFDNTYQ---ATIGIDFLS---------KT 55
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQING---VIFVHDLSQRRTKTSLQKWAVEI 132
+R ++LWD +G ER+ RS++ S I + V+D++ + KW ++
Sbjct: 56 MYLEDRTVRLQLWDTAGQERF---RSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDV 112
Query: 133 AT 134
T
Sbjct: 113 RT 114
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 15/113 (13%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
+ +++VVGDS GKT+L+++ K T+ + E
Sbjct: 28 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV----------FENYTASFEIDTQRIE 77
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTS-LQKWAVEI 132
+ LWD SG Y + R + Y + V+ D+S+ T S L+KW EI
Sbjct: 78 ----LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 126
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 19/122 (15%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G P + +++ +G+ VGKTSL+ + SF Q T+G+ ++
Sbjct: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMY-DSFDNTYQ---ATIGIDFLS---------KT 54
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQIN---GVIFVHDLSQRRTKTSLQKWAVEI 132
+R ++LWD +G ER+ RS++ S I + V+D++ + KW ++
Sbjct: 55 MYLEDRTIRLQLWDTAGLERF---RSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV 111
Query: 133 AT 134
T
Sbjct: 112 RT 113
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 15/113 (13%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
+ +++VVGDS GKT+L+++ K T+ + E
Sbjct: 23 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV----------FENYTASFEIDTQRIE 72
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTS-LQKWAVEI 132
+ LWD SG Y + R + Y + V+ D+S+ T S L+KW EI
Sbjct: 73 ----LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 121
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXX 73
NG PT ++++VGD G GKT+ V + G + TIG V V +++
Sbjct: 7 NGEVPT--FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIG--VEVHPLSF-------- 54
Query: 74 XXXXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
E F ++WD +G E++ R Y I + D++ R T ++ W
Sbjct: 55 -YTNFGEIKF--DVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNW 106
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 15/113 (13%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
+ +++VVGDS GKT+L+++ K T+ + E
Sbjct: 7 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV----------FENYTASFEIDTQRIE 56
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTS-LQKWAVEI 132
+ LWD SG Y + R + Y + V+ D+S+ T S L+KW EI
Sbjct: 57 ----LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 105
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 15/112 (13%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXER 81
++++VVGD VGKT L+ KG + T+ H+
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV--FENFSHVM------------KYKNE 69
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEI 132
+F + LWD +G E Y R + Y+ + V+ ++ R + ++ KW EI
Sbjct: 70 EFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI 121
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 13/108 (12%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
Q ++++VGD G GKT+ V + G + T+G V V + +
Sbjct: 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--VEVHPLVFHTNRGPIK------- 53
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+WD +G E++ R Y Q I + D++ R T ++ W
Sbjct: 54 ----FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 97
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 19/122 (15%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G P + +++ +G+ VGKTSL+ + SF Q T+G+ ++
Sbjct: 1 GNPLRKFKLVFLGEQSVGKTSLITRFMY-DSFDNTYQ---ATIGIDFLS---------KT 47
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQING---VIFVHDLSQRRTKTSLQKWAVEI 132
+R ++LWD +G ER+ RS++ S I + V+D++ + KW ++
Sbjct: 48 MYLEDRTVRLQLWDTAGLERF---RSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV 104
Query: 133 AT 134
T
Sbjct: 105 RT 106
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 15/112 (13%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXER 81
++++VVGD VGKT L+ KG + T+ H+
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV--FENFSHVM------------KYKNE 68
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEI 132
+F + LWD +G E Y R + Y+ + V+ ++ R + ++ KW EI
Sbjct: 69 EFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI 120
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 19/122 (15%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G P + +++ +G+ VGKTSL+ + SF Q T+G+ ++
Sbjct: 11 GNPLRKFKLVFLGEQSVGKTSLITRFMY-DSFDNTYQ---ATIGIDFLS---------KT 57
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQING---VIFVHDLSQRRTKTSLQKWAVEI 132
+R ++LWD +G ER+ RS++ S I + V+D++ + KW ++
Sbjct: 58 MYLEDRTVRLQLWDTAGLERF---RSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV 114
Query: 133 AT 134
T
Sbjct: 115 RT 116
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 12/113 (10%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXX 75
G Q++++V+GD GKTSL + + + QTIG ++ IT
Sbjct: 1 GSHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITL---------- 50
Query: 76 XXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+ +++WDI G GV+ V+D++ ++ +L+ W
Sbjct: 51 --PGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDW 101
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 17/114 (14%)
Query: 19 TGQVRVLVVGDSGVGKTSLVNLIV-KGSSFSRP-SQTIGCTVGVKHITYXXXXXXXXXXX 76
T + +V VVG++ VGK++L+++ KGS F + + T G V V +T
Sbjct: 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVS----- 72
Query: 77 XXXERDFFVELW--DISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
VEL+ D +G + YK+ S ++ + I V D+S + S + W
Sbjct: 73 --------VELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAW 118
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXX 79
G+ +++ +G+ VGKTSL+ + SF Q T+G+ ++
Sbjct: 1 GKFKLVFLGEQSVGKTSLITRFMY-DSFDNTYQ---ATIGIDFLS---------KTMYLE 47
Query: 80 ERDFFVELWDISGHERYKDCRSILYSQING---VIFVHDLSQRRTKTSLQKWAVEIAT 134
+R ++LWD +G ER+ RS++ S I + V+D++ + KW ++ T
Sbjct: 48 DRTVRLQLWDTAGQERF---RSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRT 102
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 13/107 (12%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXER 81
++++VVG+ VGK+S++ KG +TIG + I +
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQI-------------QVNDE 52
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
D + LWD +G E + Y + V + R + ++ W
Sbjct: 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSW 99
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 24/102 (23%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGC---TVGVKHITYXXXXXXXXXXXX 77
++R+L+VG G GKT+++ + G + TIG TV K+I++
Sbjct: 17 EMRILMVGLDGAGKTTVLYKLKLGEVIT-TIPTIGFNVETVQYKNISFT----------- 64
Query: 78 XXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
+WD+ G +R + Y GVIFV D + R
Sbjct: 65 ---------VWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDR 97
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXX 74
G PT ++++VGD G GKT+ V + G + TIG V V +++
Sbjct: 1 GEVPT--FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIG--VEVHPLSF--------- 47
Query: 75 XXXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
E F ++WD +G E++ R Y I + D++ R T ++ W
Sbjct: 48 YTNFGEIKF--DVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNW 99
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 13/113 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLI--VKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
++ +VG++G GKT+L+ + K S S T+G V I +
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKR----------K 53
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQK-WAVEI 132
RD + +WD +G E + +Q + V+DLS+ + + K W I
Sbjct: 54 RDLVLNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNI 106
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 24/102 (23%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGC---TVGVKHITYXXXXXXXXXXXX 77
++R+L+VG G GKT+++ + G + TIG TV K+I++
Sbjct: 17 EMRILMVGLDGAGKTTVLYKLKLGEVIT-TIPTIGFNVETVQYKNISFT----------- 64
Query: 78 XXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
+WD+ G +R + Y GVIFV D + R
Sbjct: 65 ---------VWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDR 97
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 13/106 (12%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++++VGD G GKT+ V + G + TIG V V +++ E
Sbjct: 6 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIG--VEVHPLSF---------YTNFGEIK 54
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
F ++WD +G E++ R Y I + D++ R T ++ W
Sbjct: 55 F--DVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNW 98
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 13/113 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLI--VKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
++ +VG++G GKT+L+ + K S S T+G V I +
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPI----------QIRDKRK 51
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQK-WAVEI 132
RD + +WD +G E + +Q + V+DLS+ + + K W I
Sbjct: 52 RDLVLNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNI 104
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 19/113 (16%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
+++ +G+ VGKTS++ + + TIG K + E
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTL-------------YLDEGP 49
Query: 83 FFVELWDISGHERYKDCRSILYSQIN---GVIFVHDLSQRRTKTSLQKWAVEI 132
++LWD +G ER+ RS++ S I I V+D++ R++ + KW +I
Sbjct: 50 VRLQLWDTAGQERF---RSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDI 99
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 51/117 (43%), Gaps = 15/117 (12%)
Query: 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXX 76
P V+V++VGD G GKTSL+ + G+ ++ TV +++
Sbjct: 30 PGVRSVKVVLVGDGGCGKTSLLMVFADGAF----PESYTPTVFERYMV----------NL 75
Query: 77 XXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSL-QKWAVEI 132
+ + +WD +G + Y R + Y + ++ D++ + ++ +W E+
Sbjct: 76 QVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV 132
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 24/101 (23%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGC---TVGVKHITYXXXXXXXXXXXXX 78
+R+L+VG G GKT+++ + G + TIG TV K+I++
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVIT-TIPTIGFNVETVQYKNISFT------------ 47
Query: 79 XERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
+WD+ G +R + Y GVIFV D + R
Sbjct: 48 --------VWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDR 80
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 19/117 (16%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
+ +++ +G+ VGKTSL+ + SF Q T+G+ ++ +
Sbjct: 1 KFKLVFLGEQSVGKTSLITRFMY-DSFDNTYQ---ATIGIDFLS---------KTMYLED 47
Query: 81 RDFFVELWDISGHERYKDCRSILYSQING---VIFVHDLSQRRTKTSLQKWAVEIAT 134
R ++LWD +G ER+ RS++ S I + V+D++ + KW ++ T
Sbjct: 48 RTVRLQLWDTAGQERF---RSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRT 101
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 18/99 (18%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
++R+L++G GKT+++ + G S + T+G V+ +TY
Sbjct: 322 EMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTY--------------- 363
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
++ +WD+ G ++ + Y+ G+IFV D + R
Sbjct: 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADR 402
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 18/99 (18%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
++R+L+VG G GKT+++ + G + TIG V+ + Y
Sbjct: 17 EMRILMVGLDGAGKTTVLYKLKLGEVITTIP-TIG--FNVECVQYC-------------- 59
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
+ +WD+ G +R + Y GVIFV D + R
Sbjct: 60 -NISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDR 97
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 18/99 (18%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
++R+L++G G GKT+++ + G + TIG V+ +TY
Sbjct: 2 EMRILILGLDGAGKTTILYRLQVGEVVTTIP-TIG--FNVETVTY--------------- 43
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
++ ++WD+ G + YS + VI+V D R
Sbjct: 44 KNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDR 82
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 18/99 (18%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
++R+L++G GKT+++ + G S + T+G V+ +TY
Sbjct: 12 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG--FNVETVTY--------------- 53
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
++ +WD+ G ++ + Y+ G+IFV D + R
Sbjct: 54 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADR 92
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 18/99 (18%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
++R+L++G GKT+++ + G S + T+G V+ +TY
Sbjct: 13 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG--FNVETVTY--------------- 54
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
++ +WD+ G ++ + Y+ G+IFV D + R
Sbjct: 55 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADR 93
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 18/98 (18%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXER 81
VR+L+VG GKT+++ + G + TIG V R
Sbjct: 18 VRILMVGLDAAGKTTILYKVKLGEVVT-TIPTIGFNVETVEF-----------------R 59
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
+ +WD+ G ++ + YS +G+IFV D + R
Sbjct: 60 NISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDR 97
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 18/105 (17%)
Query: 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXX 74
G T + R+L++G G GKT+++ + G + TIG V+ +TY
Sbjct: 1 GSHXTREXRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTY--------- 48
Query: 75 XXXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
++ ++WD+ G + YS + VI+V D R
Sbjct: 49 ------KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDR 87
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 18/101 (17%)
Query: 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXX 78
T ++R+L++G G GKT+++ + G + TIG V+ +TY
Sbjct: 2 TREMRILILGLDGAGKTTILYRLQVGEVVTTIP-TIG--FNVETVTY------------- 45
Query: 79 XERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
++ ++WD+ G + YS + VI+V D R
Sbjct: 46 --KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDR 84
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 18/98 (18%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXER 81
+R+L++G GKT+++ + G S + T+G V+ +TY +
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG--FNVETVTY---------------K 42
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
+ +WD+ G ++ + Y+ G+IFV D + R
Sbjct: 43 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADR 80
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 18/98 (18%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXER 81
+R+L++G GKT+++ + G S + T+G V+ +TY +
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG--FNVETVTY---------------K 42
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
+ +WD+ G ++ + Y+ G+IFV D + R
Sbjct: 43 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADR 80
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 18/99 (18%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
++R+L++G GKT+++ + G S + T+G V+ +TY
Sbjct: 3 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG--FNVETVTY--------------- 44
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
++ +WD+ G ++ + Y+ G+IFV D + R
Sbjct: 45 KNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADR 83
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 18/99 (18%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
++R+L++G GKT+++ + G S + T+G V+ +TY
Sbjct: 2 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG--FNVETVTY--------------- 43
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
++ +WD+ G ++ + Y+ G+IFV D + R
Sbjct: 44 KNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADR 82
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 14/98 (14%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXER 81
++ +VVGD VGKT L ++ ++ + P + I +
Sbjct: 6 IKCVVVGDGAVGKTCL---LISYTTNAFPGEYI-----------PTVFDNYSANVMVDGK 51
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
+ LWD +G E Y R + Y Q G + D++ R
Sbjct: 52 PVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSR 89
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 18/99 (18%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
++R+L++G GKT+++ + G S + T+G V+ +TY
Sbjct: 13 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG--FNVETVTY--------------- 54
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
++ +WD+ G ++ + Y+ G+IFV D + R
Sbjct: 55 KNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADR 93
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 86 ELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTF 138
++WD +G ERY + Y I V D+S T + W ++ S +
Sbjct: 96 DIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNY 148
>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
pdb|4DHE|B Chain B, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
Length = 223
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITY 65
PPT Q + G S GK++ +N++ + S+T G T +HI Y
Sbjct: 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRT---QHINY 70
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 7/48 (14%)
Query: 24 VLVVGDSGVGKTSLVNLIV------KGSSFSRPSQTIGCTVGVKHITY 65
++VVG SG+GK++LVN + K SS++R + I TV +K I +
Sbjct: 5 IMVVGQSGLGKSTLVNTLFKSQVSRKASSWNR-EEKIPKTVEIKAIGH 51
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 18/99 (18%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
Q+R+L+VG GKT+++ + G + TIG V+ + Y
Sbjct: 17 QMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEY--------------- 58
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
++ +WD+ G +R + + G+IFV D + R
Sbjct: 59 KNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDR 97
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 18/97 (18%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
R+L +G GKT+++ + G S + T+G V+ +TY ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVT-TIPTVG--FNVETVTY---------------KN 43
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
+WD+ G ++ + Y+ G+IFV D + R
Sbjct: 44 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADR 80
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 24 VLVVGDSGVGKTSLVNLIVKGSSFSR----PSQTIGCTVGVKH 62
++VVG+SG+GK++L+N + +S PS I TV V+
Sbjct: 34 LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQ 76
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 8 RENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKG 44
REN G P +V+++G VGKTSL + V+G
Sbjct: 11 RENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEG 47
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKH 62
+++V ++GD GKTSL+ ++ + + SQT G V K
Sbjct: 41 EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQ 82
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGV 110
DFF++LWD++ K+CR+ ++ N V
Sbjct: 722 DFFLKLWDLNQ----KECRNTMFGHTNSV 746
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIF 112
+ VELW+I + DCR L S ++GV+F
Sbjct: 862 YCVELWNIDSRLKVADCRGHL-SWVHGVMF 890
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGV 110
DFF++LWD++ K+CR+ ++ N V
Sbjct: 729 DFFLKLWDLNQ----KECRNTMFGHTNSV 753
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIF 112
+ VELW+I + DCR L S ++GV+F
Sbjct: 869 YCVELWNIDSRLKVADCRGHL-SWVHGVMF 897
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 8 RENKELNGGPP-----TGQVRVLVVGDSGVGKTSLVNLIVKGSSF 47
REN GGP Q+R+++VG +G GK++ N I+ F
Sbjct: 11 RENLYFQGGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVF 55
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 20/96 (20%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYXXXXXXXXXXXXXX 79
++R+L++G G GKT+++ + G ++P TIG V+ ++Y
Sbjct: 18 ELRILILGLDGAGKTTILYRLQIGEVVTTKP--TIG--FNVETLSY-------------- 59
Query: 80 ERDFFVELWDISGHERYKDCRSILYSQINGVIFVHD 115
++ + +WD+ G + Y+ VIFV D
Sbjct: 60 -KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVD 94
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 24/102 (23%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGC---TVGVKHITYXXXXXXXXXXXX 77
++R+L+VG GKT+++ + G + TIG TV K+I++
Sbjct: 165 EMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVETVEYKNISFT----------- 212
Query: 78 XXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
+WD+ G ++ + + G+IFV D + R
Sbjct: 213 ---------VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 245
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 18/107 (16%)
Query: 15 GGPPTG--QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXX 72
G P G +V VL +G GKT+++N K + SQ I T+G +
Sbjct: 13 GLVPRGSKEVHVLCLGLDNSGKTTIIN---KLKPSNAQSQNILPTIGFSIEKFKSSSLS- 68
Query: 73 XXXXXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
++D+SG RY++ Y + +IFV D S R
Sbjct: 69 ------------FTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDR 103
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 18/99 (18%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
Q+R+L+VG GKT+++ + G + TIG V+ + Y
Sbjct: 29 QMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEY--------------- 70
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
++ +WD+ G ++ + + G+IFV D + R
Sbjct: 71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 109
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 16/18 (88%)
Query: 23 RVLVVGDSGVGKTSLVNL 40
RV+++GD GVGKTSL +L
Sbjct: 6 RVVLLGDPGVGKTSLASL 23
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 24 VLVVGDSGVGKTSLVNLIVKGSSFSR----PSQTIGCTVGVKH 62
++VVG+SG+GK++L+N + +S PS I TV V+
Sbjct: 6 LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQ 48
>pdb|4B4T|N Chain N, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 945
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 257 LDENSSDDDKFYSSGYSSDPY---NMLPPLPAQ 286
+ E +D++FY + YSS PY NM LP Q
Sbjct: 846 IKETKENDEEFYKNKYSSKPYKVDNMTRILPQQ 878
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 24 VLVVGDSGVGKTSLVNLIVKGSSFSR----PSQTIGCTVGVKH 62
++VVG+SG+GK++L+N + +S PS I TV V+
Sbjct: 11 LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQ 53
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 24/102 (23%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGC---TVGVKHITYXXXXXXXXXXXX 77
++R+L+VG GKTS++ + G + TIG TV K+I++
Sbjct: 17 EMRILMVGLDAAGKTSILYKLKLGEIVTTIP-TIGFNVETVEYKNISFT----------- 64
Query: 78 XXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
+WD+ G ++ + Y +IFV D + R
Sbjct: 65 ---------VWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDR 97
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 15/111 (13%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERD 82
++++VGD GKT L+ + KG + R
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQ--------------FPEVYVPTVFENYVADVEVDGRR 57
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEI 132
+ LWD +G E Y R + Y N V+ + + ++Q KW E+
Sbjct: 58 VELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEV 108
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 24/103 (23%)
Query: 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGC---TVGVKHITYXXXXXXXXXXX 76
G +R+L+VG GKT+++ + G + TIG TV K+I++
Sbjct: 1 GSMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFT---------- 49
Query: 77 XXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
+WD+ G ++ + + G+IFV D + R
Sbjct: 50 ----------VWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDR 82
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 24/102 (23%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGC---TVGVKHITYXXXXXXXXXXXX 77
++R+L+VG GKT+++ + G + TIG TV K+I++
Sbjct: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVETVEYKNISFT----------- 63
Query: 78 XXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
+WD+ G ++ + + G+IFV D + R
Sbjct: 64 ---------VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 96
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 24/102 (23%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGC---TVGVKHITYXXXXXXXXXXXX 77
++R+L+VG GKT+++ + G + TIG TV K+I++
Sbjct: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVETVEYKNISFT----------- 64
Query: 78 XXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
+WD+ G ++ + + G+IFV D + R
Sbjct: 65 ---------VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 17/99 (17%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
++ + +VG GKT+ VN+I G T+G ++ +T +
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVT---------------K 64
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
+ +++WDI G R++ +N ++++ D + R
Sbjct: 65 GNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADR 103
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 159 NKADVAAKEGTRGSSGNLVDAARQWVEKQG 188
N D + EG G +G L+D A Q+V+ G
Sbjct: 144 NLVDCSGPEGNEGCNGGLMDYAFQYVQDNG 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,137,196
Number of Sequences: 62578
Number of extensions: 271871
Number of successful extensions: 1489
Number of sequences better than 100.0: 191
Number of HSP's better than 100.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1193
Number of HSP's gapped (non-prelim): 203
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)