Query 019959
Match_columns 333
No_of_seqs 340 out of 2459
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 05:54:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00023 GTP-binding protein; 100.0 1.6E-68 3.4E-73 492.9 30.6 331 1-333 1-334 (334)
2 KOG0084 GTPase Rab1/YPT1, smal 100.0 3.6E-40 7.8E-45 278.8 17.3 170 18-233 6-175 (205)
3 KOG0394 Ras-related GTPase [Ge 100.0 2.6E-38 5.7E-43 264.0 15.2 176 18-233 6-181 (210)
4 KOG0078 GTP-binding protein SE 100.0 2.4E-37 5.1E-42 265.2 18.9 170 17-233 8-177 (207)
5 KOG0098 GTPase Rab2, small G p 100.0 2.3E-37 5.1E-42 258.8 18.1 169 19-234 4-172 (216)
6 KOG0092 GTPase Rab5/YPT51 and 100.0 7.1E-37 1.5E-41 257.8 15.5 168 19-233 3-170 (200)
7 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.7E-36 3.6E-41 255.7 17.1 171 13-229 14-184 (221)
8 KOG0080 GTPase Rab18, small G 100.0 2.9E-36 6.2E-41 246.2 14.6 171 16-232 6-176 (209)
9 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.3E-34 2.8E-39 247.3 17.8 171 17-234 10-180 (222)
10 cd04120 Rab12 Rab12 subfamily. 100.0 8.6E-34 1.9E-38 250.0 22.6 165 22-232 1-165 (202)
11 KOG0093 GTPase Rab3, small G p 100.0 1.6E-34 3.4E-39 232.8 16.2 170 18-234 18-187 (193)
12 KOG0079 GTP-binding protein H- 100.0 1E-34 2.2E-39 234.1 14.6 165 21-233 8-172 (198)
13 cd04121 Rab40 Rab40 subfamily. 100.0 1.6E-33 3.6E-38 245.9 21.6 166 19-232 4-169 (189)
14 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 3.3E-33 7.2E-38 242.6 19.2 166 19-230 3-180 (182)
15 KOG0086 GTPase Rab4, small G p 100.0 1.9E-33 4.1E-38 228.0 14.9 169 19-234 7-175 (214)
16 cd04133 Rop_like Rop subfamily 100.0 6.4E-33 1.4E-37 239.5 18.3 162 22-229 2-172 (176)
17 KOG0091 GTPase Rab39, small G 100.0 2.4E-33 5.1E-38 229.8 13.6 171 19-234 6-177 (213)
18 cd04131 Rnd Rnd subfamily. Th 100.0 1.3E-32 2.8E-37 238.1 18.8 164 21-230 1-176 (178)
19 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 5.2E-32 1.1E-36 243.1 21.7 171 18-234 10-192 (232)
20 KOG0095 GTPase Rab30, small G 100.0 1.5E-32 3.3E-37 221.9 15.5 169 20-235 6-174 (213)
21 cd01875 RhoG RhoG subfamily. 100.0 5.3E-32 1.1E-36 236.7 19.4 165 21-231 3-178 (191)
22 KOG0088 GTPase Rab21, small G 100.0 7.7E-33 1.7E-37 225.6 12.9 172 16-234 8-179 (218)
23 cd04122 Rab14 Rab14 subfamily. 100.0 9.8E-32 2.1E-36 229.1 20.3 164 21-231 2-165 (166)
24 cd04127 Rab27A Rab27a subfamil 100.0 3.6E-31 7.7E-36 228.3 21.4 177 20-232 3-179 (180)
25 KOG0081 GTPase Rab27, small G 100.0 3E-33 6.5E-38 228.2 7.7 180 18-234 6-185 (219)
26 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 4.3E-31 9.3E-36 227.1 19.8 165 21-232 2-166 (172)
27 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 8.9E-31 1.9E-35 230.6 22.2 171 22-233 1-171 (201)
28 cd01874 Cdc42 Cdc42 subfamily. 100.0 3.4E-31 7.3E-36 228.5 18.1 162 22-229 2-174 (175)
29 cd04128 Spg1 Spg1p. Spg1p (se 100.0 7.3E-31 1.6E-35 227.9 19.9 167 22-231 1-167 (182)
30 cd04117 Rab15 Rab15 subfamily. 100.0 7.1E-31 1.5E-35 223.1 19.1 160 22-228 1-160 (161)
31 cd01867 Rab8_Rab10_Rab13_like 100.0 1.1E-30 2.4E-35 222.9 20.2 165 20-231 2-166 (167)
32 KOG0097 GTPase Rab14, small G 100.0 3.6E-31 7.7E-36 212.3 15.1 169 19-234 9-177 (215)
33 cd01865 Rab3 Rab3 subfamily. 100.0 2E-30 4.3E-35 220.9 20.3 163 22-231 2-164 (165)
34 cd04109 Rab28 Rab28 subfamily. 100.0 1.7E-30 3.6E-35 231.4 20.6 168 22-232 1-168 (215)
35 cd04111 Rab39 Rab39 subfamily. 100.0 5.1E-30 1.1E-34 227.7 23.6 181 20-246 1-181 (211)
36 cd04119 RJL RJL (RabJ-Like) su 100.0 2E-30 4.3E-35 219.9 19.5 167 22-230 1-167 (168)
37 PF00071 Ras: Ras family; Int 100.0 1.2E-30 2.6E-35 220.8 18.1 161 23-230 1-161 (162)
38 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.7E-30 3.7E-35 232.0 19.7 166 21-232 1-178 (222)
39 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 3.1E-30 6.7E-35 219.5 20.2 163 21-230 2-164 (166)
40 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 3.3E-30 7.2E-35 221.2 20.2 165 23-231 2-166 (170)
41 cd01871 Rac1_like Rac1-like su 100.0 2.6E-30 5.7E-35 222.7 18.6 162 21-228 1-173 (174)
42 KOG0083 GTPase Rab26/Rab37, sm 100.0 3.3E-32 7.2E-37 216.1 6.0 163 25-234 1-164 (192)
43 cd04136 Rap_like Rap-like subf 100.0 2.9E-30 6.3E-35 218.4 17.9 162 21-229 1-162 (163)
44 PLN03071 GTP-binding nuclear p 100.0 4.2E-30 9.2E-35 229.5 19.2 163 19-231 11-173 (219)
45 cd04175 Rap1 Rap1 subgroup. T 100.0 4.9E-30 1.1E-34 217.9 18.3 162 21-229 1-162 (164)
46 cd04110 Rab35 Rab35 subfamily. 100.0 1.1E-29 2.4E-34 223.4 20.9 167 20-234 5-171 (199)
47 cd04125 RabA_like RabA-like su 100.0 1.6E-29 3.4E-34 220.1 21.7 165 22-233 1-165 (188)
48 cd04144 Ras2 Ras2 subfamily. 100.0 8.3E-30 1.8E-34 222.5 19.7 169 23-236 1-169 (190)
49 PLN03110 Rab GTPase; Provision 100.0 1.4E-29 3E-34 225.7 21.3 169 18-233 9-177 (216)
50 cd01864 Rab19 Rab19 subfamily. 100.0 1.1E-29 2.3E-34 216.1 19.6 163 20-228 2-164 (165)
51 PTZ00369 Ras-like protein; Pro 100.0 1.1E-29 2.3E-34 221.6 19.9 166 20-232 4-169 (189)
52 cd01868 Rab11_like Rab11-like. 100.0 1.8E-29 4E-34 214.4 20.1 163 20-229 2-164 (165)
53 cd04116 Rab9 Rab9 subfamily. 100.0 1.8E-29 3.9E-34 215.6 19.9 167 19-228 3-169 (170)
54 cd04126 Rab20 Rab20 subfamily. 100.0 1.6E-29 3.5E-34 225.5 19.8 169 22-234 1-194 (220)
55 cd04124 RabL2 RabL2 subfamily. 100.0 1.9E-29 4.1E-34 214.2 19.4 160 22-232 1-160 (161)
56 cd04106 Rab23_lke Rab23-like s 100.0 2E-29 4.3E-34 213.2 19.2 160 22-227 1-160 (162)
57 cd00877 Ran Ran (Ras-related n 100.0 2E-29 4.3E-34 215.4 19.1 160 22-231 1-160 (166)
58 cd04112 Rab26 Rab26 subfamily. 100.0 3.7E-29 8.1E-34 218.5 20.8 165 22-233 1-166 (191)
59 cd01866 Rab2 Rab2 subfamily. 100.0 4E-29 8.7E-34 213.6 20.5 165 20-231 3-167 (168)
60 cd04176 Rap2 Rap2 subgroup. T 100.0 1.7E-29 3.8E-34 214.1 18.1 162 21-229 1-162 (163)
61 smart00176 RAN Ran (Ras-relate 100.0 2.5E-29 5.3E-34 221.3 18.7 155 27-231 1-155 (200)
62 cd01873 RhoBTB RhoBTB subfamil 100.0 1.9E-29 4.2E-34 221.3 17.7 167 21-227 2-193 (195)
63 cd04134 Rho3 Rho3 subfamily. 100.0 2.3E-29 4.9E-34 219.6 17.9 163 23-231 2-175 (189)
64 cd04115 Rab33B_Rab33A Rab33B/R 100.0 5.7E-29 1.2E-33 213.0 20.0 163 21-229 2-168 (170)
65 cd04113 Rab4 Rab4 subfamily. 100.0 4.1E-29 9E-34 211.4 18.7 160 22-228 1-160 (161)
66 cd04103 Centaurin_gamma Centau 100.0 2.7E-29 5.9E-34 213.1 17.3 157 22-228 1-157 (158)
67 PLN03108 Rab family protein; P 100.0 9.6E-29 2.1E-33 219.4 21.5 168 20-234 5-172 (210)
68 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.1E-28 2.3E-33 217.4 21.3 188 22-235 1-201 (202)
69 cd04138 H_N_K_Ras_like H-Ras/N 100.0 7.2E-29 1.6E-33 209.0 19.3 161 21-229 1-161 (162)
70 cd04132 Rho4_like Rho4-like su 100.0 8.3E-29 1.8E-33 215.0 19.8 168 22-234 1-171 (187)
71 cd04101 RabL4 RabL4 (Rab-like4 100.0 1E-28 2.2E-33 209.5 19.4 161 22-229 1-163 (164)
72 smart00173 RAS Ras subfamily o 100.0 8.7E-29 1.9E-33 209.9 18.8 162 22-230 1-162 (164)
73 cd04140 ARHI_like ARHI subfami 100.0 9.3E-29 2E-33 210.6 19.0 161 22-227 2-162 (165)
74 cd04118 Rab24 Rab24 subfamily. 100.0 1.6E-28 3.4E-33 214.5 20.2 166 22-233 1-169 (193)
75 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.5E-28 3.3E-33 208.1 19.5 162 21-229 2-163 (164)
76 smart00175 RAB Rab subfamily o 100.0 2.2E-28 4.7E-33 206.9 19.8 163 22-231 1-163 (164)
77 smart00174 RHO Rho (Ras homolo 100.0 8.3E-29 1.8E-33 212.2 16.7 161 24-230 1-172 (174)
78 cd04142 RRP22 RRP22 subfamily. 100.0 1.1E-28 2.5E-33 217.0 17.8 168 22-232 1-176 (198)
79 cd01892 Miro2 Miro2 subfamily. 100.0 1.5E-28 3.3E-33 210.7 17.3 163 20-230 3-166 (169)
80 cd04130 Wrch_1 Wrch-1 subfamil 100.0 2.6E-28 5.6E-33 209.5 17.8 160 22-227 1-171 (173)
81 cd01860 Rab5_related Rab5-rela 100.0 7.4E-28 1.6E-32 203.8 19.9 162 21-229 1-162 (163)
82 cd01861 Rab6 Rab6 subfamily. 100.0 5.6E-28 1.2E-32 204.1 19.0 160 22-228 1-160 (161)
83 cd04143 Rhes_like Rhes_like su 100.0 5E-28 1.1E-32 219.7 18.9 170 22-229 1-170 (247)
84 PLN03118 Rab family protein; P 100.0 1.9E-27 4.2E-32 211.0 21.1 172 14-232 7-179 (211)
85 cd04177 RSR1 RSR1 subgroup. R 100.0 1.4E-27 3E-32 204.0 19.0 164 21-230 1-164 (168)
86 cd01862 Rab7 Rab7 subfamily. 100.0 3.4E-27 7.3E-32 201.3 20.6 169 22-232 1-169 (172)
87 cd04135 Tc10 TC10 subfamily. 100.0 1.1E-27 2.4E-32 205.2 17.6 162 22-229 1-173 (174)
88 cd01863 Rab18 Rab18 subfamily. 100.0 2.5E-27 5.5E-32 200.3 19.1 160 22-228 1-160 (161)
89 KOG0395 Ras-related GTPase [Ge 100.0 8.4E-28 1.8E-32 210.5 16.1 166 20-232 2-167 (196)
90 cd04146 RERG_RasL11_like RERG/ 100.0 1E-27 2.2E-32 203.9 15.8 162 23-230 1-164 (165)
91 cd04148 RGK RGK subfamily. Th 100.0 3.1E-27 6.6E-32 211.4 19.2 163 22-232 1-165 (221)
92 cd04123 Rab21 Rab21 subfamily. 100.0 5.4E-27 1.2E-31 197.6 19.2 161 22-229 1-161 (162)
93 PLN00223 ADP-ribosylation fact 100.0 4.1E-27 8.9E-32 204.1 18.1 164 20-232 16-180 (181)
94 cd01870 RhoA_like RhoA-like su 100.0 5E-27 1.1E-31 201.3 17.8 162 22-229 2-174 (175)
95 KOG0393 Ras-related small GTPa 100.0 3.5E-28 7.5E-33 209.5 9.9 168 20-232 3-181 (198)
96 cd04114 Rab30 Rab30 subfamily. 99.9 1.6E-26 3.5E-31 196.9 19.7 163 20-229 6-168 (169)
97 cd04150 Arf1_5_like Arf1-Arf5- 99.9 1.3E-26 2.8E-31 196.6 16.8 157 22-227 1-158 (159)
98 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 3.1E-26 6.8E-31 198.8 19.4 172 20-233 2-173 (183)
99 cd04129 Rho2 Rho2 subfamily. 99.9 2.8E-26 6E-31 199.7 18.4 165 22-232 2-175 (187)
100 smart00177 ARF ARF-like small 99.9 2.9E-26 6.4E-31 197.5 18.0 161 20-229 12-173 (175)
101 cd04149 Arf6 Arf6 subfamily. 99.9 2.5E-26 5.4E-31 196.8 17.2 160 20-227 8-167 (168)
102 PTZ00133 ADP-ribosylation fact 99.9 3.9E-26 8.6E-31 198.1 18.1 164 20-232 16-180 (182)
103 cd04139 RalA_RalB RalA/RalB su 99.9 7E-26 1.5E-30 191.3 19.2 162 22-230 1-162 (164)
104 PTZ00132 GTP-binding nuclear p 99.9 1.1E-25 2.3E-30 200.3 20.7 166 16-231 4-169 (215)
105 cd00154 Rab Rab family. Rab G 99.9 1.2E-25 2.6E-30 187.7 18.5 158 22-226 1-158 (159)
106 cd04158 ARD1 ARD1 subfamily. 99.9 6.6E-26 1.4E-30 194.0 17.1 162 23-231 1-162 (169)
107 cd01893 Miro1 Miro1 subfamily. 99.9 7E-26 1.5E-30 193.1 17.1 164 22-231 1-165 (166)
108 KOG4252 GTP-binding protein [S 99.9 1.5E-27 3.2E-32 198.5 6.1 169 18-234 17-185 (246)
109 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 1.7E-26 3.8E-31 196.9 12.5 154 23-226 1-162 (164)
110 cd04147 Ras_dva Ras-dva subfam 99.9 2.6E-25 5.6E-30 195.4 18.4 163 23-230 1-163 (198)
111 cd00876 Ras Ras family. The R 99.9 3.1E-25 6.8E-30 186.4 17.9 159 23-228 1-159 (160)
112 cd00157 Rho Rho (Ras homology) 99.9 2.4E-25 5.3E-30 189.6 17.1 160 22-227 1-170 (171)
113 cd04157 Arl6 Arl6 subfamily. 99.9 2E-25 4.3E-30 188.5 16.1 159 23-227 1-161 (162)
114 cd04137 RheB Rheb (Ras Homolog 99.9 6.8E-25 1.5E-29 189.1 19.2 164 22-232 2-165 (180)
115 cd04154 Arl2 Arl2 subfamily. 99.9 4.7E-25 1E-29 189.3 17.0 161 19-227 12-172 (173)
116 cd04156 ARLTS1 ARLTS1 subfamil 99.9 4.5E-25 9.9E-30 186.2 16.4 157 23-227 1-159 (160)
117 cd04161 Arl2l1_Arl13_like Arl2 99.9 1.2E-24 2.7E-29 186.0 16.6 156 23-227 1-166 (167)
118 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 1.6E-24 3.5E-29 186.4 17.2 158 21-227 15-173 (174)
119 cd04151 Arl1 Arl1 subfamily. 99.9 3.5E-24 7.5E-29 181.0 16.4 156 23-227 1-157 (158)
120 cd00878 Arf_Arl Arf (ADP-ribos 99.9 4.9E-24 1.1E-28 179.7 16.8 156 23-227 1-157 (158)
121 cd04160 Arfrp1 Arfrp1 subfamil 99.9 6E-24 1.3E-28 180.6 16.5 160 23-227 1-166 (167)
122 cd00879 Sar1 Sar1 subfamily. 99.9 1.2E-23 2.5E-28 183.1 17.3 164 19-228 17-189 (190)
123 smart00178 SAR Sar1p-like memb 99.9 2.4E-23 5.3E-28 180.8 17.3 161 19-228 15-183 (184)
124 cd04159 Arl10_like Arl10-like 99.9 3.1E-23 6.8E-28 173.2 17.3 157 23-227 1-158 (159)
125 PTZ00099 rab6; Provisional 99.9 7.7E-23 1.7E-27 176.6 16.5 141 44-231 3-143 (176)
126 cd01890 LepA LepA subfamily. 99.9 1.2E-22 2.6E-27 174.7 17.0 161 23-228 2-175 (179)
127 cd04155 Arl3 Arl3 subfamily. 99.9 2.4E-22 5.1E-27 171.9 17.4 160 19-227 12-172 (173)
128 PF00025 Arf: ADP-ribosylation 99.9 2E-22 4.4E-27 173.8 14.9 162 19-229 12-175 (175)
129 COG1100 GTPase SAR1 and relate 99.9 1.1E-21 2.5E-26 174.2 19.7 170 21-232 5-187 (219)
130 cd01897 NOG NOG1 is a nucleola 99.9 7.1E-22 1.5E-26 168.0 17.4 154 23-229 2-167 (168)
131 cd04171 SelB SelB subfamily. 99.9 6.2E-22 1.3E-26 167.1 15.0 155 23-226 2-162 (164)
132 cd01878 HflX HflX subfamily. 99.9 1.1E-21 2.4E-26 172.9 17.1 156 19-228 39-203 (204)
133 TIGR02528 EutP ethanolamine ut 99.9 4.8E-22 1E-26 164.7 13.0 135 23-226 2-141 (142)
134 cd01898 Obg Obg subfamily. Th 99.9 1.2E-21 2.6E-26 166.8 14.9 160 23-228 2-169 (170)
135 cd01891 TypA_BipA TypA (tyrosi 99.9 1.6E-21 3.4E-26 170.7 15.0 155 23-220 4-172 (194)
136 TIGR03156 GTP_HflX GTP-binding 99.9 3.1E-21 6.7E-26 183.4 17.6 152 22-228 190-350 (351)
137 TIGR00231 small_GTP small GTP- 99.9 1.1E-20 2.4E-25 156.8 17.8 157 21-225 1-159 (161)
138 KOG0073 GTP-binding ADP-ribosy 99.9 6.1E-21 1.3E-25 157.1 15.7 168 20-234 15-182 (185)
139 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.4E-20 3.1E-25 159.7 18.0 161 23-229 2-165 (168)
140 PRK04213 GTP-binding protein; 99.9 8E-21 1.7E-25 166.9 14.5 157 19-230 7-192 (201)
141 KOG0070 GTP-binding ADP-ribosy 99.9 6.2E-21 1.3E-25 160.8 11.9 168 16-231 12-179 (181)
142 cd01879 FeoB Ferrous iron tran 99.9 2.1E-20 4.5E-25 156.9 15.1 147 26-228 1-155 (158)
143 PF08477 Miro: Miro-like prote 99.8 1E-20 2.2E-25 152.0 12.0 114 23-162 1-119 (119)
144 PF02421 FeoB_N: Ferrous iron 99.8 5.6E-21 1.2E-25 160.6 10.7 148 22-225 1-156 (156)
145 PRK12299 obgE GTPase CgtA; Rev 99.8 5E-20 1.1E-24 173.9 18.3 163 23-231 160-329 (335)
146 KOG4423 GTP-binding protein-li 99.8 6.7E-23 1.4E-27 171.9 -1.3 176 18-233 22-197 (229)
147 TIGR00450 mnmE_trmE_thdF tRNA 99.8 1.1E-19 2.5E-24 177.5 18.2 152 20-232 202-362 (442)
148 PRK03003 GTP-binding protein D 99.8 1.2E-19 2.7E-24 179.4 18.2 155 19-230 36-199 (472)
149 PRK03003 GTP-binding protein D 99.8 8.4E-20 1.8E-24 180.6 16.8 161 20-230 210-382 (472)
150 PRK11058 GTPase HflX; Provisio 99.8 1.9E-19 4.1E-24 175.1 18.8 157 22-232 198-364 (426)
151 KOG1673 Ras GTPases [General f 99.8 5.4E-20 1.2E-24 150.1 10.6 170 17-229 16-185 (205)
152 KOG0075 GTP-binding ADP-ribosy 99.8 5.9E-20 1.3E-24 148.6 10.4 161 21-229 20-181 (186)
153 TIGR02729 Obg_CgtA Obg family 99.8 3E-19 6.6E-24 168.4 17.0 161 22-229 158-328 (329)
154 PRK15467 ethanolamine utilizat 99.8 1.1E-19 2.4E-24 154.1 12.6 141 23-231 3-148 (158)
155 cd01889 SelB_euk SelB subfamil 99.8 3E-19 6.4E-24 156.1 15.1 173 22-230 1-186 (192)
156 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 2.3E-20 5E-25 157.2 7.5 163 20-232 9-171 (216)
157 PRK15494 era GTPase Era; Provi 99.8 5.3E-19 1.1E-23 167.7 17.2 155 19-228 50-214 (339)
158 cd00882 Ras_like_GTPase Ras-li 99.8 6.9E-19 1.5E-23 144.2 15.4 155 26-226 1-156 (157)
159 TIGR03598 GTPase_YsxC ribosome 99.8 3.4E-19 7.4E-24 153.9 13.9 156 14-219 11-179 (179)
160 TIGR00436 era GTP-binding prot 99.8 5.7E-19 1.2E-23 162.6 16.2 151 23-228 2-162 (270)
161 cd01894 EngA1 EngA1 subfamily. 99.8 8.4E-19 1.8E-23 146.7 15.0 146 25-228 1-156 (157)
162 cd00881 GTP_translation_factor 99.8 7.7E-19 1.7E-23 151.6 15.0 163 23-229 1-186 (189)
163 TIGR01393 lepA GTP-binding pro 99.8 1.1E-18 2.5E-23 176.1 17.9 162 23-229 5-179 (595)
164 PRK12297 obgE GTPase CgtA; Rev 99.8 2.5E-18 5.5E-23 166.4 18.8 159 23-231 160-328 (424)
165 PRK05291 trmE tRNA modificatio 99.8 8.7E-19 1.9E-23 172.0 15.7 147 21-230 215-370 (449)
166 PRK00454 engB GTP-binding prot 99.8 2.1E-18 4.5E-23 150.5 16.4 164 14-229 17-193 (196)
167 cd04164 trmE TrmE (MnmE, ThdF, 99.8 2.3E-18 5E-23 143.9 15.5 146 22-229 2-156 (157)
168 cd01881 Obg_like The Obg-like 99.8 1.3E-18 2.8E-23 148.6 13.9 160 26-228 1-175 (176)
169 KOG0071 GTP-binding ADP-ribosy 99.8 2.1E-18 4.6E-23 138.5 13.9 163 19-229 15-177 (180)
170 cd01895 EngA2 EngA2 subfamily. 99.8 6.1E-18 1.3E-22 143.4 17.2 158 21-227 2-172 (174)
171 TIGR00487 IF-2 translation ini 99.8 4.6E-18 9.9E-23 171.1 18.4 162 18-227 84-247 (587)
172 TIGR03594 GTPase_EngA ribosome 99.8 6.9E-18 1.5E-22 165.2 18.2 163 19-230 170-344 (429)
173 TIGR00475 selB selenocysteine- 99.8 3E-18 6.5E-23 172.9 15.8 158 22-229 1-165 (581)
174 KOG3883 Ras family small GTPas 99.8 8.9E-18 1.9E-22 136.9 15.3 161 21-227 9-172 (198)
175 CHL00189 infB translation init 99.8 7E-18 1.5E-22 172.4 17.2 165 19-228 242-408 (742)
176 PRK00093 GTP-binding protein D 99.8 1.1E-17 2.3E-22 164.1 17.8 147 22-227 2-159 (435)
177 PRK05306 infB translation init 99.8 1.6E-17 3.4E-22 171.2 18.3 161 18-227 287-449 (787)
178 COG2262 HflX GTPases [General 99.8 1.4E-17 3E-22 156.5 15.7 156 23-232 194-358 (411)
179 cd04163 Era Era subfamily. Er 99.8 2.8E-17 6E-22 138.0 15.9 157 21-228 3-167 (168)
180 cd04105 SR_beta Signal recogni 99.8 1.1E-17 2.5E-22 147.6 14.0 122 23-167 2-125 (203)
181 TIGR00437 feoB ferrous iron tr 99.8 1E-17 2.2E-22 169.3 15.3 146 28-229 1-154 (591)
182 TIGR03594 GTPase_EngA ribosome 99.8 2.1E-17 4.6E-22 161.8 16.8 150 23-229 1-159 (429)
183 PRK12296 obgE GTPase CgtA; Rev 99.8 2.3E-17 5E-22 161.9 16.8 172 22-232 160-342 (500)
184 PRK09518 bifunctional cytidyla 99.8 3.3E-17 7.2E-22 169.5 18.5 160 20-230 449-621 (712)
185 PRK12298 obgE GTPase CgtA; Rev 99.7 4.4E-17 9.6E-22 156.8 17.2 164 23-231 161-334 (390)
186 cd01888 eIF2_gamma eIF2-gamma 99.7 2.4E-17 5.2E-22 145.5 14.0 171 22-227 1-196 (203)
187 KOG0076 GTP-binding ADP-ribosy 99.7 7.9E-18 1.7E-22 140.1 9.9 163 21-232 17-189 (197)
188 cd00880 Era_like Era (E. coli 99.7 5.2E-17 1.1E-21 134.7 14.9 153 26-228 1-162 (163)
189 PRK00093 GTP-binding protein D 99.7 1.1E-16 2.4E-21 157.0 19.3 161 19-229 171-343 (435)
190 cd01896 DRG The developmentall 99.7 6.4E-17 1.4E-21 145.8 16.2 160 23-229 2-225 (233)
191 PRK09518 bifunctional cytidyla 99.7 7.8E-17 1.7E-21 166.7 18.6 154 20-230 274-436 (712)
192 PRK09554 feoB ferrous iron tra 99.7 7.4E-17 1.6E-21 166.8 18.4 152 21-228 3-166 (772)
193 PRK00089 era GTPase Era; Revie 99.7 1.3E-16 2.8E-21 148.5 15.7 156 21-229 5-170 (292)
194 PRK05433 GTP-binding protein L 99.7 2E-16 4.3E-21 160.1 17.6 163 22-229 8-183 (600)
195 TIGR00491 aIF-2 translation in 99.7 2.3E-16 4.9E-21 158.7 17.8 123 23-165 6-135 (590)
196 cd01876 YihA_EngB The YihA (En 99.7 1.6E-16 3.6E-21 133.7 14.2 154 23-228 1-169 (170)
197 KOG0074 GTP-binding ADP-ribosy 99.7 6.3E-17 1.4E-21 130.3 10.0 165 16-227 12-176 (185)
198 COG0370 FeoB Fe2+ transport sy 99.7 8.9E-17 1.9E-21 159.5 13.0 190 21-273 3-201 (653)
199 PF00009 GTP_EFTU: Elongation 99.7 6.6E-17 1.4E-21 140.8 10.6 166 20-229 2-186 (188)
200 cd04166 CysN_ATPS CysN_ATPS su 99.7 1.7E-16 3.7E-21 140.6 12.9 153 23-220 1-184 (208)
201 PRK10218 GTP-binding protein; 99.7 5.3E-16 1.1E-20 156.6 17.7 154 21-217 5-172 (607)
202 TIGR01394 TypA_BipA GTP-bindin 99.7 2.7E-16 5.9E-21 158.7 15.6 163 23-228 3-189 (594)
203 COG2229 Predicted GTPase [Gene 99.7 1.3E-15 2.8E-20 128.6 17.0 160 16-228 5-176 (187)
204 cd04167 Snu114p Snu114p subfam 99.7 2.4E-16 5.3E-21 140.0 13.1 118 23-164 2-136 (213)
205 TIGR00483 EF-1_alpha translati 99.7 2.8E-16 6.2E-21 153.7 14.4 164 19-223 5-200 (426)
206 COG1159 Era GTPase [General fu 99.7 6.1E-16 1.3E-20 140.2 14.7 157 20-229 5-171 (298)
207 PRK04004 translation initiatio 99.7 7.5E-16 1.6E-20 155.4 16.8 175 22-228 7-216 (586)
208 PRK10512 selenocysteinyl-tRNA- 99.7 8.5E-16 1.8E-20 155.8 15.7 156 23-228 2-164 (614)
209 PRK12317 elongation factor 1-a 99.7 7.4E-16 1.6E-20 150.8 13.7 163 19-223 4-198 (425)
210 COG1160 Predicted GTPases [Gen 99.7 1.8E-15 3.8E-20 144.3 15.3 149 22-229 4-164 (444)
211 cd04168 TetM_like Tet(M)-like 99.7 3.9E-15 8.4E-20 134.5 16.0 114 23-165 1-130 (237)
212 KOG1707 Predicted Ras related/ 99.6 7.8E-16 1.7E-20 149.3 11.3 170 18-231 6-176 (625)
213 COG0486 ThdF Predicted GTPase 99.6 3E-15 6.5E-20 143.1 14.8 156 18-232 214-378 (454)
214 TIGR03680 eif2g_arch translati 99.6 1.9E-15 4E-20 146.9 12.8 179 19-228 2-194 (406)
215 PRK04000 translation initiatio 99.6 2.2E-15 4.8E-20 146.5 13.3 177 20-229 8-200 (411)
216 PF10662 PduV-EutP: Ethanolami 99.6 4.4E-15 9.6E-20 122.4 12.7 135 23-225 3-141 (143)
217 cd01883 EF1_alpha Eukaryotic e 99.6 4.1E-15 8.9E-20 132.8 12.8 156 23-219 1-194 (219)
218 cd04165 GTPBP1_like GTPBP1-lik 99.6 8.6E-15 1.9E-19 131.1 14.7 128 23-166 1-153 (224)
219 cd01884 EF_Tu EF-Tu subfamily. 99.6 1.8E-14 4E-19 126.3 16.5 155 21-218 2-171 (195)
220 COG0218 Predicted GTPase [Gene 99.6 3.8E-14 8.3E-19 122.1 17.4 165 15-230 18-197 (200)
221 KOG0072 GTP-binding ADP-ribosy 99.6 9.1E-16 2E-20 124.0 6.9 163 20-231 17-180 (182)
222 COG1160 Predicted GTPases [Gen 99.6 8E-15 1.7E-19 139.8 14.4 160 20-228 177-349 (444)
223 cd04104 p47_IIGP_like p47 (47- 99.6 1.4E-14 3.1E-19 127.1 13.6 169 22-234 2-188 (197)
224 cd04169 RF3 RF3 subfamily. Pe 99.6 5.8E-14 1.3E-18 129.0 16.3 115 23-166 4-138 (267)
225 cd01885 EF2 EF2 (for archaea a 99.6 3.8E-14 8.2E-19 126.6 13.3 143 23-187 2-160 (222)
226 PRK12735 elongation factor Tu; 99.6 6.5E-14 1.4E-18 135.7 15.5 156 19-217 10-180 (396)
227 COG1084 Predicted GTPase [Gene 99.5 3.5E-13 7.6E-18 123.5 17.5 160 19-232 166-338 (346)
228 PLN00043 elongation factor 1-a 99.5 7.4E-14 1.6E-18 137.0 13.9 162 19-220 5-203 (447)
229 PRK12736 elongation factor Tu; 99.5 1.8E-13 3.9E-18 132.6 16.5 154 20-216 11-179 (394)
230 TIGR00485 EF-Tu translation el 99.5 2E-13 4.4E-18 132.3 16.0 155 19-216 10-179 (394)
231 TIGR02034 CysN sulfate adenyly 99.5 9E-14 2E-18 135.1 13.5 154 22-220 1-187 (406)
232 cd01850 CDC_Septin CDC/Septin. 99.5 1.6E-13 3.4E-18 126.7 13.3 137 20-190 3-178 (276)
233 PRK00741 prfC peptide chain re 99.5 3E-13 6.6E-18 135.0 15.9 117 21-166 10-146 (526)
234 PRK13351 elongation factor G; 99.5 3E-13 6.6E-18 139.8 16.2 115 19-166 6-140 (687)
235 PLN03126 Elongation factor Tu; 99.5 3.2E-13 6.9E-18 133.2 15.4 158 18-218 78-250 (478)
236 cd01899 Ygr210 Ygr210 subfamil 99.5 5.5E-13 1.2E-17 125.1 15.6 95 24-118 1-111 (318)
237 CHL00071 tufA elongation facto 99.5 9.2E-13 2E-17 128.2 17.1 157 19-218 10-181 (409)
238 PRK05124 cysN sulfate adenylyl 99.5 3.7E-13 7.9E-18 133.1 14.2 159 19-221 25-216 (474)
239 KOG1423 Ras-like GTPase ERA [C 99.5 4.4E-13 9.6E-18 121.4 13.4 174 18-227 69-268 (379)
240 cd04170 EF-G_bact Elongation f 99.5 6.8E-13 1.5E-17 122.0 14.5 113 23-166 1-131 (268)
241 PRK05506 bifunctional sulfate 99.5 4.6E-13 1E-17 137.2 14.6 159 17-220 20-211 (632)
242 KOG0705 GTPase-activating prot 99.5 2E-13 4.3E-18 131.5 11.0 262 11-330 20-293 (749)
243 PF01926 MMR_HSR1: 50S ribosom 99.5 1.3E-12 2.9E-17 104.5 13.1 105 23-160 1-116 (116)
244 COG0532 InfB Translation initi 99.5 2.2E-12 4.7E-17 125.3 16.7 161 23-229 7-169 (509)
245 PF04670 Gtr1_RagA: Gtr1/RagA 99.5 2.6E-13 5.5E-18 121.6 9.4 168 23-234 1-176 (232)
246 cd01886 EF-G Elongation factor 99.5 2.1E-12 4.5E-17 118.8 15.4 113 23-166 1-131 (270)
247 KOG1489 Predicted GTP-binding 99.5 7.5E-13 1.6E-17 120.5 12.1 156 23-226 198-363 (366)
248 COG1163 DRG Predicted GTPase [ 99.4 1.8E-12 3.9E-17 118.6 14.0 171 18-232 60-291 (365)
249 PTZ00141 elongation factor 1- 99.4 1.6E-12 3.5E-17 127.6 14.8 163 19-220 5-203 (446)
250 PRK00049 elongation factor Tu; 99.4 3.8E-12 8.2E-17 123.4 17.1 156 19-217 10-180 (396)
251 smart00010 small_GTPase Small 99.4 9.2E-13 2E-17 105.8 9.9 90 22-165 1-91 (124)
252 PF09439 SRPRB: Signal recogni 99.4 2.3E-13 5.1E-18 116.9 6.7 119 23-166 5-127 (181)
253 PLN03127 Elongation factor Tu; 99.4 4.8E-12 1E-16 124.2 16.2 118 18-166 58-192 (447)
254 TIGR00503 prfC peptide chain r 99.4 4.8E-12 1E-16 126.4 15.3 117 20-165 10-146 (527)
255 TIGR00484 EF-G translation elo 99.4 1.2E-11 2.7E-16 127.8 16.1 132 20-190 9-158 (689)
256 PTZ00327 eukaryotic translatio 99.4 1.1E-11 2.3E-16 121.8 13.8 177 18-227 31-230 (460)
257 PRK09602 translation-associate 99.3 2.8E-11 6E-16 116.9 16.3 96 22-117 2-113 (396)
258 KOG1191 Mitochondrial GTPase [ 99.3 7.6E-12 1.7E-16 119.9 12.2 174 22-234 269-454 (531)
259 COG0536 Obg Predicted GTPase [ 99.3 2.2E-11 4.8E-16 112.3 14.1 164 23-233 161-336 (369)
260 COG3596 Predicted GTPase [Gene 99.3 1E-11 2.2E-16 111.5 11.6 171 18-230 36-222 (296)
261 KOG3905 Dynein light intermedi 99.3 7.9E-11 1.7E-15 107.6 16.9 180 22-231 53-291 (473)
262 KOG0462 Elongation factor-type 99.3 2E-11 4.4E-16 118.1 13.4 160 19-228 58-233 (650)
263 KOG0077 Vesicle coat complex C 99.3 5.1E-12 1.1E-16 104.8 8.0 116 22-166 21-136 (193)
264 KOG1145 Mitochondrial translat 99.3 8.2E-11 1.8E-15 113.9 17.1 160 23-230 155-316 (683)
265 KOG0090 Signal recognition par 99.3 2E-11 4.4E-16 105.5 11.0 132 23-181 40-175 (238)
266 PRK14845 translation initiatio 99.3 2.9E-11 6.3E-16 127.8 14.2 166 32-227 472-670 (1049)
267 cd01852 AIG1 AIG1 (avrRpt2-ind 99.3 5.3E-11 1.1E-15 104.3 12.7 116 22-166 1-131 (196)
268 PRK12740 elongation factor G; 99.3 5.5E-11 1.2E-15 122.8 14.8 109 27-166 1-127 (668)
269 COG4917 EutP Ethanolamine util 99.3 1.9E-11 4.2E-16 96.9 8.6 136 23-226 3-142 (148)
270 TIGR00490 aEF-2 translation el 99.3 3.4E-11 7.3E-16 125.0 12.6 118 20-166 18-153 (720)
271 KOG1707 Predicted Ras related/ 99.3 1.2E-10 2.7E-15 113.6 14.8 152 5-191 409-560 (625)
272 COG0481 LepA Membrane GTPase L 99.2 6.8E-11 1.5E-15 112.9 12.3 159 23-228 11-184 (603)
273 COG5256 TEF1 Translation elong 99.2 9.5E-11 2.1E-15 110.6 12.7 162 19-220 5-201 (428)
274 PRK09866 hypothetical protein; 99.2 4.3E-10 9.3E-15 112.1 17.7 113 83-227 230-350 (741)
275 PRK12739 elongation factor G; 99.2 1.9E-10 4.1E-15 119.1 15.8 116 20-166 7-140 (691)
276 KOG0410 Predicted GTP binding 99.2 3E-11 6.6E-16 110.4 8.1 155 23-232 180-343 (410)
277 PRK00007 elongation factor G; 99.2 3.9E-10 8.4E-15 116.7 15.3 132 19-189 8-157 (693)
278 PF05783 DLIC: Dynein light in 99.2 9.6E-10 2.1E-14 107.9 17.0 180 22-231 26-265 (472)
279 TIGR00157 ribosome small subun 99.2 5.6E-11 1.2E-15 107.9 7.6 95 94-226 24-119 (245)
280 KOG1490 GTP-binding protein CR 99.2 2.1E-10 4.6E-15 110.1 10.9 167 18-234 165-345 (620)
281 COG2895 CysN GTPases - Sulfate 99.1 9.6E-10 2.1E-14 101.7 11.7 154 19-219 4-192 (431)
282 cd01853 Toc34_like Toc34-like 99.1 2.6E-09 5.6E-14 97.1 14.4 125 17-167 27-165 (249)
283 PLN00116 translation elongatio 99.1 9E-10 2E-14 116.1 12.5 147 1-165 1-164 (843)
284 TIGR00991 3a0901s02IAP34 GTP-b 99.1 3.2E-09 6.9E-14 98.5 14.5 122 19-166 36-168 (313)
285 PTZ00258 GTP-binding protein; 99.1 2.6E-09 5.7E-14 102.4 13.7 100 18-117 18-126 (390)
286 COG1217 TypA Predicted membran 99.0 2E-09 4.3E-14 102.7 12.0 168 23-233 7-194 (603)
287 PRK13768 GTPase; Provisional 99.0 1.3E-09 2.8E-14 99.5 10.3 70 84-166 98-177 (253)
288 cd00066 G-alpha G protein alph 99.0 4.4E-09 9.6E-14 99.1 14.2 135 81-234 159-315 (317)
289 KOG3886 GTP-binding protein [S 99.0 9.8E-10 2.1E-14 96.2 8.4 125 22-173 5-138 (295)
290 KOG1532 GTPase XAB1, interacts 99.0 2.7E-09 5.8E-14 95.7 10.6 29 14-42 12-40 (366)
291 cd01882 BMS1 Bms1. Bms1 is an 99.0 6.7E-09 1.5E-13 93.1 13.1 111 19-166 37-148 (225)
292 smart00275 G_alpha G protein a 99.0 7.6E-09 1.6E-13 98.4 13.7 134 83-234 184-338 (342)
293 PTZ00416 elongation factor 2; 99.0 3E-09 6.4E-14 112.1 11.9 125 19-164 17-157 (836)
294 PRK09601 GTP-binding protein Y 98.9 2.4E-08 5.2E-13 94.9 15.1 96 22-117 3-107 (364)
295 KOG0461 Selenocysteine-specifi 98.9 4.4E-08 9.4E-13 90.5 15.9 182 18-234 4-193 (522)
296 TIGR02836 spore_IV_A stage IV 98.9 4E-08 8.6E-13 93.7 15.9 119 20-163 16-192 (492)
297 TIGR00101 ureG urease accessor 98.9 1.7E-08 3.8E-13 88.7 12.6 102 83-229 92-195 (199)
298 PRK07560 elongation factor EF- 98.9 8.7E-09 1.9E-13 107.4 11.8 119 20-165 19-153 (731)
299 PF00350 Dynamin_N: Dynamin fa 98.9 1.2E-08 2.6E-13 86.7 9.7 63 84-161 102-168 (168)
300 PF05049 IIGP: Interferon-indu 98.9 9.3E-09 2E-13 97.8 9.1 166 21-230 35-218 (376)
301 TIGR00073 hypB hydrogenase acc 98.8 1.5E-08 3.2E-13 89.6 9.5 165 21-228 22-205 (207)
302 KOG1144 Translation initiation 98.8 2.8E-08 6.1E-13 99.3 12.2 186 18-233 472-690 (1064)
303 KOG0458 Elongation factor 1 al 98.8 5.4E-08 1.2E-12 95.4 13.7 165 15-219 171-371 (603)
304 PF04548 AIG1: AIG1 family; I 98.8 4.2E-08 9.2E-13 87.1 11.3 114 22-166 1-131 (212)
305 PF00735 Septin: Septin; Inte 98.8 9.8E-08 2.1E-12 88.3 13.1 118 21-166 4-157 (281)
306 PF03029 ATP_bind_1: Conserved 98.7 2.8E-08 6.1E-13 89.8 8.0 70 84-165 92-170 (238)
307 TIGR00993 3a0901s04IAP86 chlor 98.7 3.1E-07 6.7E-12 92.3 16.0 124 17-167 114-252 (763)
308 COG5257 GCD11 Translation init 98.7 5.5E-08 1.2E-12 89.2 9.7 182 19-231 8-203 (415)
309 PRK09435 membrane ATPase/prote 98.7 6.3E-08 1.4E-12 91.3 10.4 112 80-230 146-260 (332)
310 smart00053 DYNc Dynamin, GTPas 98.7 2.1E-07 4.5E-12 84.0 13.2 69 83-166 125-207 (240)
311 KOG1486 GTP-binding protein DR 98.7 1.6E-07 3.5E-12 83.4 11.7 173 18-234 59-292 (364)
312 COG4108 PrfC Peptide chain rel 98.7 1.8E-07 4E-12 89.0 12.5 131 23-190 14-164 (528)
313 KOG0468 U5 snRNP-specific prot 98.7 1.2E-07 2.5E-12 94.1 11.2 123 18-164 125-262 (971)
314 TIGR00750 lao LAO/AO transport 98.7 2.5E-07 5.4E-12 86.6 12.8 111 81-229 125-237 (300)
315 COG3276 SelB Selenocysteine-sp 98.7 4.1E-07 8.9E-12 86.9 13.4 156 23-229 2-161 (447)
316 cd01900 YchF YchF subfamily. 98.7 7.6E-08 1.6E-12 88.5 8.1 94 24-117 1-103 (274)
317 cd01855 YqeH YqeH. YqeH is an 98.6 1.9E-07 4.2E-12 81.3 9.3 96 96-229 24-124 (190)
318 COG0480 FusA Translation elong 98.6 5.5E-07 1.2E-11 92.4 12.3 120 19-167 8-144 (697)
319 PRK12289 GTPase RsgA; Reviewed 98.6 3.2E-07 7E-12 87.4 9.9 92 97-227 80-172 (352)
320 TIGR03597 GTPase_YqeH ribosome 98.5 3E-07 6.4E-12 88.2 9.0 101 93-227 50-150 (360)
321 KOG1954 Endocytosis/signaling 98.5 8.5E-07 1.8E-11 82.8 10.9 130 18-166 55-226 (532)
322 cd01859 MJ1464 MJ1464. This f 98.5 5.1E-07 1.1E-11 75.9 8.7 93 97-229 3-95 (156)
323 cd01854 YjeQ_engC YjeQ/EngC. 98.4 6.7E-07 1.5E-11 83.1 8.4 86 102-226 74-160 (287)
324 COG0050 TufB GTPases - transla 98.4 2.7E-06 5.8E-11 77.4 11.6 145 19-200 10-172 (394)
325 KOG0082 G-protein alpha subuni 98.4 3.9E-06 8.5E-11 79.1 13.1 134 83-234 195-348 (354)
326 PRK00098 GTPase RsgA; Reviewed 98.4 6.4E-07 1.4E-11 83.7 7.3 85 103-225 77-162 (298)
327 KOG2486 Predicted GTPase [Gene 98.4 8.6E-07 1.9E-11 80.0 7.6 167 16-227 131-313 (320)
328 COG0378 HypB Ni2+-binding GTPa 98.4 3E-06 6.4E-11 73.1 10.4 103 83-228 97-199 (202)
329 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 9.7E-07 2.1E-11 73.1 6.8 54 23-93 85-138 (141)
330 COG0012 Predicted GTPase, prob 98.3 1E-06 2.2E-11 83.0 7.1 98 21-118 2-109 (372)
331 PRK12288 GTPase RsgA; Reviewed 98.3 1.6E-06 3.5E-11 82.6 8.6 85 104-227 118-205 (347)
332 cd01856 YlqF YlqF. Proteins o 98.3 2.6E-06 5.7E-11 72.9 8.0 59 18-93 112-170 (171)
333 COG1703 ArgK Putative periplas 98.3 3.6E-06 7.8E-11 77.1 8.5 110 79-230 140-254 (323)
334 PF03308 ArgK: ArgK protein; 98.2 1.1E-06 2.3E-11 79.3 4.4 102 83-228 122-228 (266)
335 cd01858 NGP_1 NGP-1. Autoanti 98.2 3.9E-06 8.5E-11 70.7 7.3 56 20-92 101-156 (157)
336 cd04178 Nucleostemin_like Nucl 98.2 3.9E-06 8.4E-11 72.1 7.1 57 19-92 115-171 (172)
337 cd01859 MJ1464 MJ1464. This f 98.2 5.1E-06 1.1E-10 69.8 7.6 55 21-92 101-155 (156)
338 PRK10463 hydrogenase nickel in 98.2 1E-05 2.2E-10 74.8 9.3 24 21-44 104-127 (290)
339 KOG1547 Septin CDC10 and relat 98.2 1.5E-05 3.1E-10 70.8 9.8 136 21-190 46-219 (336)
340 PRK09563 rbgA GTPase YlqF; Rev 98.2 6.5E-06 1.4E-10 76.5 8.0 59 18-93 118-176 (287)
341 cd01858 NGP_1 NGP-1. Autoanti 98.1 1.1E-05 2.4E-10 68.0 8.5 87 103-228 5-93 (157)
342 COG5258 GTPBP1 GTPase [General 98.1 1.7E-05 3.7E-10 74.6 10.4 185 18-232 114-340 (527)
343 KOG1491 Predicted GTP-binding 98.1 6.8E-06 1.5E-10 76.2 7.6 103 16-118 15-126 (391)
344 COG5192 BMS1 GTP-binding prote 98.1 4E-05 8.7E-10 75.2 12.8 160 17-229 65-226 (1077)
345 COG5019 CDC3 Septin family pro 98.1 6.3E-05 1.4E-09 70.7 13.6 118 20-167 22-178 (373)
346 KOG2655 Septin family protein 98.1 4.3E-05 9.4E-10 72.2 12.4 116 21-166 21-173 (366)
347 TIGR00092 GTP-binding protein 98.1 1.3E-05 2.8E-10 76.5 9.0 97 22-118 3-109 (368)
348 TIGR03596 GTPase_YlqF ribosome 98.1 1E-05 2.2E-10 74.8 8.2 58 19-93 116-173 (276)
349 COG1161 Predicted GTPases [Gen 98.1 7.3E-06 1.6E-10 77.4 7.3 61 15-92 126-186 (322)
350 KOG1143 Predicted translation 98.1 9.5E-06 2.1E-10 76.0 7.0 130 18-166 164-318 (591)
351 TIGR03348 VI_IcmF type VI secr 98.0 1.8E-05 3.8E-10 86.7 9.6 112 24-165 114-257 (1169)
352 cd01855 YqeH YqeH. YqeH is an 98.0 8.7E-06 1.9E-10 70.8 5.9 55 22-92 128-189 (190)
353 cd01849 YlqF_related_GTPase Yl 98.0 2.3E-05 4.9E-10 65.9 8.0 83 108-229 1-84 (155)
354 PRK13796 GTPase YqeH; Provisio 98.0 4.1E-05 9E-10 73.6 9.9 101 94-228 57-157 (365)
355 cd01856 YlqF YlqF. Proteins o 98.0 2.4E-05 5.2E-10 66.9 7.3 93 95-229 8-100 (171)
356 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 2.1E-05 4.6E-10 65.0 6.5 49 102-166 7-57 (141)
357 KOG4273 Uncharacterized conser 97.9 7.4E-05 1.6E-09 66.7 9.9 109 23-164 6-122 (418)
358 cd01849 YlqF_related_GTPase Yl 97.9 3.1E-05 6.6E-10 65.1 7.0 26 20-45 99-124 (155)
359 cd01851 GBP Guanylate-binding 97.8 7.8E-05 1.7E-09 66.8 8.8 87 20-120 6-105 (224)
360 KOG0460 Mitochondrial translat 97.8 0.0001 2.2E-09 68.6 9.4 161 18-222 51-230 (449)
361 KOG3859 Septins (P-loop GTPase 97.8 0.00012 2.7E-09 66.3 8.9 64 20-92 41-104 (406)
362 KOG0463 GTP-binding protein GP 97.8 5.9E-05 1.3E-09 70.9 6.8 129 19-166 131-288 (641)
363 PF03193 DUF258: Protein of un 97.7 3.5E-05 7.7E-10 65.2 4.5 22 23-44 37-58 (161)
364 KOG0467 Translation elongation 97.7 0.00015 3.2E-09 73.6 9.1 115 20-163 8-136 (887)
365 KOG1487 GTP-binding protein DR 97.7 0.00012 2.5E-09 65.9 7.4 87 22-124 60-154 (358)
366 KOG0448 Mitofusin 1 GTPase, in 97.7 0.00053 1.2E-08 69.0 12.1 67 85-167 208-277 (749)
367 KOG3887 Predicted small GTPase 97.6 0.00049 1.1E-08 61.3 10.0 172 23-231 29-203 (347)
368 PRK12288 GTPase RsgA; Reviewed 97.6 0.00013 2.9E-09 69.5 6.8 23 23-45 207-229 (347)
369 TIGR03596 GTPase_YlqF ribosome 97.6 0.00021 4.6E-09 66.0 7.7 89 100-230 15-103 (276)
370 TIGR03597 GTPase_YqeH ribosome 97.6 0.00016 3.4E-09 69.4 6.6 23 22-44 155-177 (360)
371 PRK01889 GTPase RsgA; Reviewed 97.5 0.00057 1.2E-08 65.5 10.0 83 104-225 110-192 (356)
372 TIGR00157 ribosome small subun 97.5 0.00019 4.1E-09 65.2 6.1 22 23-44 122-143 (245)
373 PRK13796 GTPase YqeH; Provisio 97.5 0.00015 3.3E-09 69.7 5.8 23 22-44 161-183 (365)
374 KOG1424 Predicted GTP-binding 97.5 0.00013 2.9E-09 71.1 4.9 56 21-93 314-369 (562)
375 KOG0464 Elongation factor G [T 97.5 0.00012 2.7E-09 69.5 4.2 142 22-200 38-195 (753)
376 cd03112 CobW_like The function 97.4 0.00043 9.4E-09 58.5 6.9 21 24-44 3-23 (158)
377 PRK10416 signal recognition pa 97.4 0.00051 1.1E-08 64.8 7.9 22 22-43 115-136 (318)
378 PRK12289 GTPase RsgA; Reviewed 97.4 0.00031 6.8E-09 67.1 6.1 23 23-45 174-196 (352)
379 COG1162 Predicted GTPases [Gen 97.4 0.00035 7.5E-09 64.6 5.9 22 23-44 166-187 (301)
380 PRK13695 putative NTPase; Prov 97.4 0.0031 6.8E-08 53.9 11.6 22 22-43 1-22 (174)
381 TIGR00064 ftsY signal recognit 97.3 0.0012 2.6E-08 60.9 9.4 21 22-42 73-93 (272)
382 PRK14974 cell division protein 97.3 0.00033 7.2E-09 66.4 5.5 22 21-42 140-161 (336)
383 PF00503 G-alpha: G-protein al 97.3 0.00055 1.2E-08 66.4 7.2 74 81-165 234-317 (389)
384 PRK09563 rbgA GTPase YlqF; Rev 97.3 0.00058 1.2E-08 63.5 6.7 89 100-230 18-106 (287)
385 KOG0447 Dynamin-like GTP bindi 97.2 0.0039 8.4E-08 61.5 11.7 68 84-166 413-494 (980)
386 cd01854 YjeQ_engC YjeQ/EngC. 97.2 0.00075 1.6E-08 62.7 6.6 24 22-45 162-185 (287)
387 KOG0466 Translation initiation 97.2 0.00023 5E-09 65.3 2.6 176 19-229 36-240 (466)
388 PRK12727 flagellar biosynthesi 97.2 0.0077 1.7E-07 60.2 13.4 22 22-43 351-372 (559)
389 PRK00098 GTPase RsgA; Reviewed 97.1 0.0009 2E-08 62.6 6.3 23 23-45 166-188 (298)
390 PF06858 NOG1: Nucleolar GTP-b 97.0 0.0023 4.9E-08 44.2 5.9 44 106-162 13-58 (58)
391 KOG0459 Polypeptide release fa 97.0 0.0014 3.1E-08 62.4 6.5 184 14-223 72-279 (501)
392 KOG0469 Elongation factor 2 [T 97.0 0.0022 4.7E-08 62.6 7.5 149 23-188 21-186 (842)
393 COG1618 Predicted nucleotide k 97.0 0.0034 7.3E-08 52.8 7.5 24 20-43 4-27 (179)
394 TIGR01425 SRP54_euk signal rec 97.0 0.0045 9.8E-08 60.5 9.6 21 22-42 101-121 (429)
395 COG3523 IcmF Type VI protein s 96.9 0.0021 4.5E-08 69.5 7.2 50 104-165 212-270 (1188)
396 PRK14722 flhF flagellar biosyn 96.9 0.0062 1.4E-07 58.5 9.5 22 22-43 138-159 (374)
397 PRK14721 flhF flagellar biosyn 96.9 0.021 4.5E-07 55.8 13.1 22 22-43 192-213 (420)
398 KOG2484 GTPase [General functi 96.8 0.0011 2.5E-08 62.9 4.0 59 17-92 248-306 (435)
399 cd03115 SRP The signal recogni 96.7 0.0018 3.9E-08 55.3 4.1 68 82-167 82-155 (173)
400 PF02492 cobW: CobW/HypB/UreG, 96.7 0.0065 1.4E-07 52.3 7.5 82 82-188 84-171 (178)
401 KOG2485 Conserved ATP/GTP bind 96.7 0.0048 1E-07 57.0 6.9 26 18-43 140-165 (335)
402 PF05621 TniB: Bacterial TniB 96.6 0.0018 3.9E-08 60.1 3.8 24 22-45 62-85 (302)
403 PRK05703 flhF flagellar biosyn 96.6 0.029 6.2E-07 55.1 12.4 20 23-42 223-242 (424)
404 cd02038 FleN-like FleN is a me 96.5 0.011 2.4E-07 48.6 7.6 107 25-164 4-110 (139)
405 KOG0465 Mitochondrial elongati 96.5 0.0061 1.3E-07 60.9 6.4 139 23-198 41-195 (721)
406 PRK11537 putative GTP-binding 96.4 0.016 3.4E-07 54.7 8.9 22 23-44 6-27 (318)
407 PF13207 AAA_17: AAA domain; P 96.3 0.0031 6.8E-08 50.1 3.0 22 23-44 1-22 (121)
408 PF09547 Spore_IV_A: Stage IV 96.3 0.13 2.8E-06 50.0 14.0 24 20-43 16-39 (492)
409 COG1419 FlhF Flagellar GTP-bin 96.3 0.02 4.3E-07 55.2 8.6 65 83-166 282-353 (407)
410 cd00009 AAA The AAA+ (ATPases 96.3 0.03 6.5E-07 44.9 8.7 23 23-45 21-43 (151)
411 cd02042 ParA ParA and ParB of 96.3 0.027 5.7E-07 43.6 8.0 82 24-130 2-84 (104)
412 COG0523 Putative GTPases (G3E 96.3 0.059 1.3E-06 50.9 11.6 22 24-45 4-25 (323)
413 PRK10867 signal recognition pa 96.2 0.011 2.4E-07 58.0 6.5 22 21-42 100-121 (433)
414 PRK08118 topology modulation p 96.2 0.0041 8.9E-08 53.0 3.2 22 23-44 3-24 (167)
415 PF13555 AAA_29: P-loop contai 96.2 0.0052 1.1E-07 43.3 3.1 20 23-42 25-44 (62)
416 COG1162 Predicted GTPases [Gen 96.2 0.025 5.4E-07 52.5 8.3 88 102-226 75-163 (301)
417 PRK14723 flhF flagellar biosyn 96.1 0.047 1E-06 57.0 11.1 22 23-44 187-208 (767)
418 COG1116 TauB ABC-type nitrate/ 96.1 0.0043 9.2E-08 55.8 3.1 22 23-44 31-52 (248)
419 cd03222 ABC_RNaseL_inhibitor T 96.1 0.037 7.9E-07 47.7 8.8 22 23-44 27-48 (177)
420 PRK07261 topology modulation p 96.1 0.0049 1.1E-07 52.8 3.3 22 23-44 2-23 (171)
421 cd03110 Fer4_NifH_child This p 96.0 0.054 1.2E-06 46.2 9.4 82 81-189 91-172 (179)
422 KOG0780 Signal recognition par 96.0 0.006 1.3E-07 58.0 3.6 100 23-122 103-229 (483)
423 TIGR02475 CobW cobalamin biosy 96.0 0.085 1.8E-06 50.3 11.4 21 24-44 7-27 (341)
424 PF13521 AAA_28: AAA domain; P 96.0 0.0045 9.7E-08 52.3 2.3 22 23-44 1-22 (163)
425 cd03111 CpaE_like This protein 96.0 0.069 1.5E-06 41.8 8.9 63 84-160 44-106 (106)
426 KOG0066 eIF2-interacting prote 96.0 0.07 1.5E-06 51.8 10.5 112 22-135 614-750 (807)
427 COG0563 Adk Adenylate kinase a 95.9 0.0063 1.4E-07 52.5 3.2 23 22-44 1-23 (178)
428 PRK06731 flhF flagellar biosyn 95.9 0.056 1.2E-06 49.8 9.6 22 22-43 76-97 (270)
429 PF13671 AAA_33: AAA domain; P 95.9 0.0058 1.3E-07 50.0 2.8 20 24-43 2-21 (143)
430 TIGR00959 ffh signal recogniti 95.8 0.058 1.3E-06 52.9 9.8 80 82-189 182-267 (428)
431 PF00005 ABC_tran: ABC transpo 95.8 0.0067 1.4E-07 49.3 2.8 22 23-44 13-34 (137)
432 COG1136 SalX ABC-type antimicr 95.8 0.007 1.5E-07 54.0 3.0 22 23-44 33-54 (226)
433 KOG3929 Uncharacterized conser 95.8 0.0093 2E-07 53.8 3.7 90 18-122 42-135 (363)
434 cd02036 MinD Bacterial cell di 95.8 0.16 3.4E-06 42.9 11.2 65 84-165 64-128 (179)
435 cd01983 Fer4_NifH The Fer4_Nif 95.7 0.077 1.7E-06 39.5 8.3 70 24-120 2-72 (99)
436 KOG0085 G protein subunit Galp 95.7 0.038 8.2E-07 49.2 7.1 130 81-233 197-352 (359)
437 PRK12726 flagellar biosynthesi 95.7 0.095 2.1E-06 50.5 10.3 22 22-43 207-228 (407)
438 smart00382 AAA ATPases associa 95.7 0.011 2.3E-07 47.0 3.4 24 23-46 4-27 (148)
439 cd02019 NK Nucleoside/nucleoti 95.7 0.012 2.5E-07 42.4 3.1 21 24-44 2-22 (69)
440 cd04178 Nucleostemin_like Nucl 95.6 0.027 5.8E-07 48.3 5.8 43 108-166 1-45 (172)
441 cd00071 GMPK Guanosine monopho 95.6 0.01 2.2E-07 48.8 3.1 21 24-44 2-22 (137)
442 PRK00771 signal recognition pa 95.6 0.019 4.2E-07 56.4 5.4 22 21-42 95-116 (437)
443 COG1126 GlnQ ABC-type polar am 95.5 0.015 3.3E-07 51.3 4.0 23 23-45 30-52 (240)
444 KOG2423 Nucleolar GTPase [Gene 95.5 0.0066 1.4E-07 57.8 1.8 86 16-121 302-389 (572)
445 PRK05416 glmZ(sRNA)-inactivati 95.5 0.089 1.9E-06 48.9 9.3 74 23-135 8-83 (288)
446 COG3840 ThiQ ABC-type thiamine 95.5 0.012 2.6E-07 50.7 3.1 24 23-46 27-50 (231)
447 PRK10078 ribose 1,5-bisphospho 95.5 0.012 2.5E-07 51.0 3.1 22 23-44 4-25 (186)
448 PF00004 AAA: ATPase family as 95.5 0.012 2.7E-07 47.0 3.0 21 24-44 1-21 (132)
449 cd00820 PEPCK_HprK Phosphoenol 95.5 0.012 2.6E-07 46.3 2.9 20 23-42 17-36 (107)
450 TIGR02322 phosphon_PhnN phosph 95.4 0.012 2.7E-07 50.3 3.0 22 23-44 3-24 (179)
451 cd03238 ABC_UvrA The excision 95.4 0.015 3.2E-07 50.2 3.3 20 23-42 23-42 (176)
452 COG3839 MalK ABC-type sugar tr 95.4 0.013 2.7E-07 55.6 3.1 22 24-45 32-53 (338)
453 TIGR00235 udk uridine kinase. 95.4 0.016 3.6E-07 50.9 3.7 25 20-44 5-29 (207)
454 TIGR03263 guanyl_kin guanylate 95.4 0.014 3E-07 49.9 3.1 22 23-44 3-24 (180)
455 PRK06217 hypothetical protein; 95.3 0.016 3.5E-07 50.0 3.5 23 22-44 2-24 (183)
456 PF03205 MobB: Molybdopterin g 95.3 0.013 2.8E-07 48.5 2.6 22 23-44 2-23 (140)
457 PHA00729 NTP-binding motif con 95.3 0.02 4.3E-07 51.2 3.9 40 1-44 1-40 (226)
458 PF13238 AAA_18: AAA domain; P 95.2 0.015 3.2E-07 46.3 2.8 21 24-44 1-21 (129)
459 PF07728 AAA_5: AAA domain (dy 95.2 0.014 3.1E-07 47.6 2.7 21 24-44 2-22 (139)
460 COG1120 FepC ABC-type cobalami 95.2 0.015 3.3E-07 52.9 3.1 21 23-43 30-50 (258)
461 PRK14738 gmk guanylate kinase; 95.2 0.021 4.6E-07 50.3 3.8 24 21-44 13-36 (206)
462 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.2 0.018 3.9E-07 50.9 3.3 22 23-44 32-53 (218)
463 TIGR02881 spore_V_K stage V sp 95.1 0.026 5.5E-07 51.6 4.3 32 12-43 33-64 (261)
464 COG3638 ABC-type phosphate/pho 95.1 0.018 3.8E-07 51.6 3.0 21 23-43 32-52 (258)
465 TIGR00960 3a0501s02 Type II (G 95.1 0.02 4.2E-07 50.6 3.3 22 23-44 31-52 (216)
466 COG4525 TauB ABC-type taurine 95.1 0.018 4E-07 50.2 2.9 22 23-44 33-54 (259)
467 PRK05480 uridine/cytidine kina 95.1 0.024 5.2E-07 49.9 3.8 25 20-44 5-29 (209)
468 cd03225 ABC_cobalt_CbiO_domain 95.0 0.021 4.5E-07 50.2 3.4 22 23-44 29-50 (211)
469 PRK14737 gmk guanylate kinase; 95.0 0.02 4.3E-07 49.7 3.2 22 23-44 6-27 (186)
470 cd01130 VirB11-like_ATPase Typ 95.0 0.021 4.5E-07 49.4 3.3 22 23-44 27-48 (186)
471 cd03226 ABC_cobalt_CbiO_domain 95.0 0.021 4.6E-07 50.0 3.3 22 23-44 28-49 (205)
472 TIGR01166 cbiO cobalt transpor 95.0 0.02 4.4E-07 49.5 3.1 22 23-44 20-41 (190)
473 cd03261 ABC_Org_Solvent_Resist 95.0 0.022 4.7E-07 51.1 3.4 22 23-44 28-49 (235)
474 PRK14530 adenylate kinase; Pro 95.0 0.022 4.7E-07 50.5 3.3 21 23-43 5-25 (215)
475 PRK03839 putative kinase; Prov 95.0 0.022 4.8E-07 48.8 3.3 22 23-44 2-23 (180)
476 cd02023 UMPK Uridine monophosp 95.0 0.02 4.4E-07 49.9 3.0 21 24-44 2-22 (198)
477 cd03264 ABC_drug_resistance_li 94.9 0.021 4.6E-07 50.2 3.1 22 23-44 27-48 (211)
478 TIGR02315 ABC_phnC phosphonate 94.9 0.022 4.9E-07 51.2 3.3 22 23-44 30-51 (243)
479 PF03266 NTPase_1: NTPase; In 94.9 0.024 5.2E-07 48.4 3.3 21 23-43 1-21 (168)
480 PRK10751 molybdopterin-guanine 94.9 0.021 4.6E-07 49.0 3.0 22 23-44 8-29 (173)
481 cd03265 ABC_DrrA DrrA is the A 94.9 0.023 5.1E-07 50.3 3.4 22 23-44 28-49 (220)
482 COG0194 Gmk Guanylate kinase [ 94.9 0.022 4.7E-07 49.1 3.0 23 23-45 6-28 (191)
483 TIGR03608 L_ocin_972_ABC putat 94.9 0.024 5.2E-07 49.6 3.4 22 23-44 26-47 (206)
484 TIGR01360 aden_kin_iso1 adenyl 94.9 0.022 4.8E-07 48.8 3.1 21 23-43 5-25 (188)
485 PF13191 AAA_16: AAA ATPase do 94.9 0.02 4.3E-07 48.8 2.8 21 23-43 26-46 (185)
486 cd03292 ABC_FtsE_transporter F 94.9 0.024 5.2E-07 49.9 3.4 22 23-44 29-50 (214)
487 PF04665 Pox_A32: Poxvirus A32 94.9 0.023 5E-07 51.3 3.2 25 20-44 12-36 (241)
488 PRK00300 gmk guanylate kinase; 94.9 0.022 4.7E-07 49.8 3.0 22 23-44 7-28 (205)
489 PRK13541 cytochrome c biogenes 94.9 0.025 5.4E-07 49.2 3.4 23 23-45 28-50 (195)
490 TIGR02673 FtsE cell division A 94.9 0.024 5.3E-07 49.9 3.4 22 23-44 30-51 (214)
491 cd03262 ABC_HisP_GlnQ_permease 94.9 0.025 5.3E-07 49.8 3.4 22 23-44 28-49 (213)
492 cd03269 ABC_putative_ATPase Th 94.9 0.025 5.4E-07 49.7 3.4 22 23-44 28-49 (210)
493 cd03259 ABC_Carb_Solutes_like 94.9 0.025 5.4E-07 49.8 3.4 22 23-44 28-49 (213)
494 PF13401 AAA_22: AAA domain; P 94.8 0.022 4.7E-07 45.7 2.7 22 23-44 6-27 (131)
495 cd03224 ABC_TM1139_LivF_branch 94.8 0.025 5.3E-07 50.1 3.3 22 23-44 28-49 (222)
496 TIGR02211 LolD_lipo_ex lipopro 94.8 0.026 5.6E-07 50.0 3.4 22 23-44 33-54 (221)
497 COG3845 ABC-type uncharacteriz 94.8 0.14 3.1E-06 50.3 8.6 63 86-162 137-201 (501)
498 cd03263 ABC_subfamily_A The AB 94.8 0.024 5.3E-07 50.1 3.1 22 23-44 30-51 (220)
499 cd03293 ABC_NrtD_SsuB_transpor 94.8 0.027 5.8E-07 49.9 3.4 22 23-44 32-53 (220)
500 cd03229 ABC_Class3 This class 94.8 0.028 6.1E-07 48.2 3.4 22 23-44 28-49 (178)
No 1
>PLN00023 GTP-binding protein; Provisional
Probab=100.00 E-value=1.6e-68 Score=492.89 Aligned_cols=331 Identities=84% Similarity=1.342 Sum_probs=295.8
Q ss_pred CchhhhhhhhhccCCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCC
Q 019959 1 MFWKERERENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (333)
||||+++++.+++++.++...+||+|||+.|||||||+++|+++.|...+.+|+|+++..+.+.++..+.+...+.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~ 80 (334)
T PLN00023 1 MFWRDRERENKEQNGGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSE 80 (334)
T ss_pred CccccccccccccccCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999998888888654434444555556
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
+.+.++||||+|+++|..++..+|+++|++|+|||++++.+|+++..|+.++.....+++++.++++++.++|+||||||
T Consensus 81 k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK 160 (334)
T PLN00023 81 RDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNK 160 (334)
T ss_pred ceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEEC
Confidence 78999999999999999999999999999999999999999999999999999887666565555565567999999999
Q ss_pred cCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHhcccCCC
Q 019959 161 ADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEMP 240 (333)
Q Consensus 161 ~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~~~~~~~ 240 (333)
+||..+..++++..+..+++++||+++|+.++.+++|..|+||+.+++.++||.+...++++..+|++|++++|+..+++
T Consensus 161 ~DL~~~~~~r~~s~~~~e~a~~~A~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (334)
T PLN00023 161 ADIAPKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGNGGLIAAAKEARYDKEALIKFFRMLIRRRYFSDELP 240 (334)
T ss_pred ccccccccccccccccHHHHHHHHHHcCCCccccccccccccCCCccHhhhhhhhcccHHHHHHHHHHHHHHHhhcccCC
Confidence 99976543334333346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccccccCCCCccccc-cCCCCCC--CCCCCCCccccCCCCCCCCCCCCCCcccCCccccccccCCC
Q 019959 241 APNPWSISPTHKPIQRLDENSSDDDKFYS-SGYSSDP--YNMLPPLPAQRNLTPPPTLYPQQPVSVQENYNLPRFSLTGS 317 (333)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~--~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~ 317 (333)
.+.+|+.+|.++.+... +++.+++.+++ ++|+|++ |+.++||||||+++|||+++|||||++++||++|||+++++
T Consensus 241 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (334)
T PLN00023 241 APSPWSLSPQRSSQRLD-ENTSDDDQFYKRTSLAGDPYKYNTLPPLPAQRNLTPPPTLYPQQPVSSSENYRIPRFSLSSS 319 (334)
T ss_pred CCCCcccCCCCcccccc-ccccchhhhhhhccccCCcccccCCCCCcccccCCCCCccccCCCCCchhccccccccccCC
Confidence 99999999977755555 55555555555 9999999 89999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCC
Q 019959 318 QEISSSARSKRTDINV 333 (333)
Q Consensus 318 ~~~~~~~~~~~~~~~~ 333 (333)
+++++ +|++|+||||
T Consensus 320 ~~~~~-~~~~~~~~~~ 334 (334)
T PLN00023 320 PESSN-ARSKRMDINV 334 (334)
T ss_pred ccccc-ccccccccCC
Confidence 99999 9999999997
No 2
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-40 Score=278.78 Aligned_cols=170 Identities=25% Similarity=0.497 Sum_probs=158.4
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
-.+.+||+|+|++|||||+|+.||.++.|.+.+..|+|+|+..+.+.++ ++.++++||||+|||||+
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~-------------gk~iKlQIWDTAGQERFr 72 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELD-------------GKTIKLQIWDTAGQERFR 72 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeec-------------ceEEEEEeeeccccHHHh
Confidence 4678999999999999999999999999999999999999999999988 789999999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.+...||++||+||+|||+|+.+||.++..|+.++.++.. .++|.+|||||+|+.+. +.|+.
T Consensus 73 tit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~------------~~v~~lLVGNK~Dl~~~--~~v~~---- 134 (205)
T KOG0084|consen 73 TITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYAS------------ENVPKLLVGNKCDLTEK--RVVST---- 134 (205)
T ss_pred hhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhcc------------CCCCeEEEeeccccHhh--eecCH----
Confidence 9999999999999999999999999999999999999974 57899999999999987 78885
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++++.++.++++. +|+| +|||++.||++.|..+...+..+.
T Consensus 135 ~~a~~fa~~~~~~------~f~E---------TSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 135 EEAQEFADELGIP------IFLE---------TSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred HHHHHHHHhcCCc------ceee---------cccCCccCHHHHHHHHHHHHHHhc
Confidence 9999999999953 2778 999999999999999998887764
No 3
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=2.6e-38 Score=264.04 Aligned_cols=176 Identities=28% Similarity=0.492 Sum_probs=161.2
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
+...+||+|+|++|||||||+|+|.+.+|...+..|||.+|..|.+.++ ++.+.++||||+|||+|.
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd-------------~~~vtlQiWDTAGQERFq 72 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVD-------------DRSVTLQIWDTAGQERFQ 72 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEc-------------CeEEEEEEEecccHHHhh
Confidence 4566899999999999999999999999999999999999999999987 789999999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
++...||+++|++++|||++++.||++|..|.+++..+..... ....|+||+|||+|+.....|.|+.
T Consensus 73 sLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~--------Pe~FPFVilGNKiD~~~~~~r~VS~---- 140 (210)
T KOG0394|consen 73 SLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQD--------PETFPFVILGNKIDVDGGKSRQVSE---- 140 (210)
T ss_pred hcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCC--------CCcccEEEEcccccCCCCccceeeH----
Confidence 9999999999999999999999999999999999988865332 2589999999999998866688885
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
+.|++||+..| ++|||| +|||.+.||+++|+.+.+.++...
T Consensus 141 ~~Aq~WC~s~g------nipyfE---------tSAK~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 141 KKAQTWCKSKG------NIPYFE---------TSAKEATNVDEAFEEIARRALANE 181 (210)
T ss_pred HHHHHHHHhcC------CceeEE---------ecccccccHHHHHHHHHHHHHhcc
Confidence 99999999999 589999 999999999999999988877653
No 4
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-37 Score=265.23 Aligned_cols=170 Identities=24% Similarity=0.426 Sum_probs=160.3
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
+..+.+||++||++|||||+|+.+|..+.|...+..|+|+||..+.+.++ +..+.+++|||+||++|
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~-------------g~~i~lQiWDtaGQerf 74 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELD-------------GKKIKLQIWDTAGQERF 74 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeC-------------CeEEEEEEEEcccchhH
Confidence 56788999999999999999999999999999999999999999999988 78999999999999999
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
+.+...||++|+++++|||+++..||+++..|+..|.++.. .++|++|||||+|+..+ |.|+.
T Consensus 75 ~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~------------~~v~~~LvGNK~D~~~~--R~V~~--- 137 (207)
T KOG0078|consen 75 RTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHAS------------DDVVKILVGNKCDLEEK--RQVSK--- 137 (207)
T ss_pred HHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCC------------CCCcEEEeecccccccc--ccccH---
Confidence 99999999999999999999999999999999999999964 58999999999999986 88885
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
+.++++|.++|+ +|+| ||||+|.||++.|-.|.+.+..+.
T Consensus 138 -e~ge~lA~e~G~-------~F~E---------tSAk~~~NI~eaF~~La~~i~~k~ 177 (207)
T KOG0078|consen 138 -ERGEALAREYGI-------KFFE---------TSAKTNFNIEEAFLSLARDILQKL 177 (207)
T ss_pred -HHHHHHHHHhCC-------eEEE---------ccccCCCCHHHHHHHHHHHHHhhc
Confidence 999999999994 6888 999999999999999999988743
No 5
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-37 Score=258.81 Aligned_cols=169 Identities=23% Similarity=0.435 Sum_probs=159.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+|++++|+.|||||+|+.+|+.+.|...+..|+|+++..+.+.++ ++.++|+||||+|+|.|++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id-------------~k~IKlqiwDtaGqe~frs 70 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTID-------------GKQIKLQIWDTAGQESFRS 70 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEc-------------CceEEEEEEecCCcHHHHH
Confidence 467899999999999999999999999999999999999999999987 7999999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
....||+.|.++|+|||+++++||.+|..|+.+++.+.. +++-|+|+|||+||... |.|+. +
T Consensus 71 v~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~------------~NmvImLiGNKsDL~~r--R~Vs~----E 132 (216)
T KOG0098|consen 71 VTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSN------------ENMVIMLIGNKSDLEAR--REVSK----E 132 (216)
T ss_pred HHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcC------------CCcEEEEEcchhhhhcc--ccccH----H
Confidence 999999999999999999999999999999999999853 58999999999999987 78986 9
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
+++.||+++|+ .|+| +||+++.||+++|.....++.+...
T Consensus 133 EGeaFA~ehgL-------ifmE---------TSakt~~~VEEaF~nta~~Iy~~~q 172 (216)
T KOG0098|consen 133 EGEAFAREHGL-------IFME---------TSAKTAENVEEAFINTAKEIYRKIQ 172 (216)
T ss_pred HHHHHHHHcCc-------eeeh---------hhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999996 4778 9999999999999999999988765
No 6
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-37 Score=257.85 Aligned_cols=168 Identities=29% Similarity=0.447 Sum_probs=154.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+++|+.+||||||+.||..++|.....+|+|.-|..+.+.++ +..++++||||+|+|+|.+
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~-------------~~~ikfeIWDTAGQERy~s 69 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVD-------------DNTIKFEIWDTAGQERYHS 69 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeC-------------CcEEEEEEEEcCCcccccc
Confidence 457899999999999999999999999999899999999999999987 6789999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
+.+.||++|+++|+|||+++.+||..++.|+.++.+... +++-|.|||||+||.+. |+|.. +
T Consensus 70 lapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~------------~~~vialvGNK~DL~~~--R~V~~----~ 131 (200)
T KOG0092|consen 70 LAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS------------PNIVIALVGNKADLLER--REVEF----E 131 (200)
T ss_pred cccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC------------CCeEEEEecchhhhhhc--ccccH----H
Confidence 999999999999999999999999999999999999863 56778899999999986 78884 9
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++..+|+..|+ +|+| +|||+|.|++++|..|.+.+....
T Consensus 132 ea~~yAe~~gl-------l~~E---------TSAKTg~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 132 EAQAYAESQGL-------LFFE---------TSAKTGENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred HHHHHHHhcCC-------EEEE---------EecccccCHHHHHHHHHHhccCcc
Confidence 99999999985 5888 999999999999999888776543
No 7
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-36 Score=255.65 Aligned_cols=171 Identities=22% Similarity=0.334 Sum_probs=154.2
Q ss_pred cCCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 13 LNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 13 ~~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
...+.+.+.+||+++|+.+|||||||+||+.+.|...|..|||+||..+.+.+. +..+.|++|||+|
T Consensus 14 ~~~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~-------------d~~vrLQlWDTAG 80 (221)
T KOG0094|consen 14 ATFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLE-------------DRTVRLQLWDTAG 80 (221)
T ss_pred cccCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEc-------------CcEEEEEEEeccc
Confidence 345667777999999999999999999999999999999999999999999887 7899999999999
Q ss_pred chhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 93 HERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 93 ~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
||+|+.+.+.|++++.++|+|||+++..||++..+|++.+..... ..++-|+|||||.||.++ |+++
T Consensus 81 QERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~g-----------s~~viI~LVGnKtDL~dk--rqvs 147 (221)
T KOG0094|consen 81 QERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERG-----------SDDVIIFLVGNKTDLSDK--RQVS 147 (221)
T ss_pred HHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccC-----------CCceEEEEEcccccccch--hhhh
Confidence 999999999999999999999999999999999999999988754 125788999999999988 8888
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
. ++++..|++++.. |+| +|||.|+||+.+|..+...+
T Consensus 148 ~----eEg~~kAkel~a~-------f~e---------tsak~g~NVk~lFrrIaa~l 184 (221)
T KOG0094|consen 148 I----EEGERKAKELNAE-------FIE---------TSAKAGENVKQLFRRIAAAL 184 (221)
T ss_pred H----HHHHHHHHHhCcE-------EEE---------ecccCCCCHHHHHHHHHHhc
Confidence 5 8899999999963 777 99999999998887765544
No 8
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.9e-36 Score=246.24 Aligned_cols=171 Identities=24% Similarity=0.395 Sum_probs=154.9
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
......+||+|||++|||||||+-+|+.+.|......|+|+||..+.+.++ +..+++.||||+|||+
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vd-------------g~~~KlaiWDTAGqEr 72 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVD-------------GKRLKLAIWDTAGQER 72 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEc-------------CceEEEEEEeccchHh
Confidence 345667999999999999999999999999999999999999999999987 7899999999999999
Q ss_pred hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
|+.+.+.||++|.++|+|||++.+++|.++..|++++..++. ++++-.++||||+|...+ |.|+.
T Consensus 73 FRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Yst-----------n~diikmlVgNKiDkes~--R~V~r-- 137 (209)
T KOG0080|consen 73 FRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYST-----------NPDIIKMLVGNKIDKESE--RVVDR-- 137 (209)
T ss_pred hhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcC-----------CccHhHhhhcccccchhc--ccccH--
Confidence 999999999999999999999999999999999999999876 457888999999998765 88886
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+++..||++++++ |+| ||||+..||...|+++++.+++.
T Consensus 138 --eEG~kfAr~h~~L-------FiE---------~SAkt~~~V~~~FeelveKIi~t 176 (209)
T KOG0080|consen 138 --EEGLKFARKHRCL-------FIE---------CSAKTRENVQCCFEELVEKIIET 176 (209)
T ss_pred --HHHHHHHHhhCcE-------EEE---------cchhhhccHHHHHHHHHHHHhcC
Confidence 9999999999954 888 99999988887777777766653
No 9
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-34 Score=247.35 Aligned_cols=171 Identities=22% Similarity=0.420 Sum_probs=159.7
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
.-.+.+||+++|+++||||-|+.||+.++|..+...|+|+++..+.+.++ ++.++.+||||+|||+|
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd-------------~k~vkaqIWDTAGQERy 76 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVD-------------GKTVKAQIWDTAGQERY 76 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeec-------------CcEEEEeeecccchhhh
Confidence 35678999999999999999999999999999999999999999999987 79999999999999999
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
+.+...||++|.+.++|||++++.+|+++..|+.+++.+.. .+++|+|||||+||.+. |.|..
T Consensus 77 rAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad------------~nivimLvGNK~DL~~l--raV~t--- 139 (222)
T KOG0087|consen 77 RAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD------------SNIVIMLVGNKSDLNHL--RAVPT--- 139 (222)
T ss_pred ccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCC------------CCeEEEEeecchhhhhc--cccch---
Confidence 99999999999999999999999999999999999999974 68999999999999985 78885
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++++.+|++.++ .|+| +||..+.|++.+|+.++.++.+..-
T Consensus 140 -e~~k~~Ae~~~l-------~f~E---------tSAl~~tNVe~aF~~~l~~I~~~vs 180 (222)
T KOG0087|consen 140 -EDGKAFAEKEGL-------FFLE---------TSALDATNVEKAFERVLTEIYKIVS 180 (222)
T ss_pred -hhhHhHHHhcCc-------eEEE---------ecccccccHHHHHHHHHHHHHHHHH
Confidence 999999999984 5888 9999999999999999998887654
No 10
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=8.6e-34 Score=250.04 Aligned_cols=165 Identities=23% Similarity=0.456 Sum_probs=145.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+.|+|+|+.|||||||+++|+++.|...+.+|++.++..+.+.++ +..+.++||||+|+++|..++.
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~-------------~~~v~l~iwDtaGqe~~~~l~~ 67 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELR-------------GKKIRLQIWDTAGQERFNSITS 67 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEEC-------------CEEEEEEEEeCCCchhhHHHHH
Confidence 479999999999999999999999999999999999988888876 5789999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++|+|||+++++||+++..|+..+..... .++|++|||||+||... +.++. ++++
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~------------~~~piilVgNK~DL~~~--~~v~~----~~~~ 129 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS------------EDAELLLVGNKLDCETD--REISR----QQGE 129 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC------------CCCcEEEEEECcccccc--cccCH----HHHH
Confidence 999999999999999999999999999998876532 47999999999999764 66764 7788
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++++++. .++|+| |||++|.||+++|+.+++.+.+.
T Consensus 130 ~~a~~~~------~~~~~e---------tSAktg~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 130 KFAQQIT------GMRFCE---------ASAKDNFNVDEIFLKLVDDILKK 165 (202)
T ss_pred HHHHhcC------CCEEEE---------ecCCCCCCHHHHHHHHHHHHHHh
Confidence 8888752 145778 99999999999999999877653
No 11
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-34 Score=232.80 Aligned_cols=170 Identities=25% Similarity=0.402 Sum_probs=156.4
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
-.+.+|++|+|+..||||||+.+++++.|...+..|.|+++..+++--. ++.++++||||+|+|+|+
T Consensus 18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~-------------~kRiklQiwDTagqEryr 84 (193)
T KOG0093|consen 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRS-------------DKRIKLQIWDTAGQERYR 84 (193)
T ss_pred ccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeec-------------ccEEEEEEEecccchhhh
Confidence 3567899999999999999999999999999999999999999987544 578999999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.+...+|++++++|+|||++|.+||..++.|.-.|...+- .++|+|+||||||+.++ |.++.
T Consensus 85 tiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw------------~naqvilvgnKCDmd~e--Rvis~---- 146 (193)
T KOG0093|consen 85 TITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSW------------DNAQVILVGNKCDMDSE--RVISH---- 146 (193)
T ss_pred HHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeec------------cCceEEEEecccCCccc--eeeeH----
Confidence 9999999999999999999999999999999999988863 58999999999999987 78885
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
+.++++++++|+ .||| +|||.+.||+.+|+.++..+.+..-
T Consensus 147 e~g~~l~~~LGf-------efFE---------tSaK~NinVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 147 ERGRQLADQLGF-------EFFE---------TSAKENINVKQVFERLVDIICDKMS 187 (193)
T ss_pred HHHHHHHHHhCh-------HHhh---------hcccccccHHHHHHHHHHHHHHHhh
Confidence 999999999996 4888 9999999999999999998887654
No 12
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1e-34 Score=234.05 Aligned_cols=165 Identities=26% Similarity=0.470 Sum_probs=153.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+|.+|+|++|||||||+.+|..+.|...|..|+|+|+..+++.++ |..++++||||+|+|+|+.+.
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~-------------G~~VkLqIwDtAGqErFrtit 74 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDIN-------------GDRVKLQIWDTAGQERFRTIT 74 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecC-------------CcEEEEEEeecccHHHHHHHH
Confidence 4688999999999999999999999999999999999999999987 789999999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..||++.+++|+|||+++.+||.++..|++++...+. .+|-+|||||.|+.+. +.|.+ +++
T Consensus 75 styyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncd-------------sv~~vLVGNK~d~~~R--rvV~t----~dA 135 (198)
T KOG0079|consen 75 STYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCD-------------SVPKVLVGNKNDDPER--RVVDT----EDA 135 (198)
T ss_pred HHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCc-------------cccceecccCCCCccc--eeeeh----HHH
Confidence 9999999999999999999999999999999999985 7999999999999875 56664 999
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
+.||...|+ .+|| +|||+..|++.+|..+.+.+++..
T Consensus 136 r~~A~~mgi-------e~FE---------TSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 136 RAFALQMGI-------ELFE---------TSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred HHHHHhcCc-------hhee---------hhhhhcccchHHHHHHHHHHHHHH
Confidence 999999984 5888 999999999999999888887765
No 13
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.6e-33 Score=245.87 Aligned_cols=166 Identities=25% Similarity=0.415 Sum_probs=148.8
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|+.|||||||+++|.++.+...+.++++.++..+.+.++ +..+.++||||+|+++|..
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~-------------~~~~~l~iwDt~G~~~~~~ 70 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLD-------------GRRVKLQLWDTSGQGRFCT 70 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEEC-------------CEEEEEEEEeCCCcHHHHH
Confidence 456899999999999999999999999988888899999888888776 5789999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++++|++|+|||++++.||+++..|+.++.... +++|+||||||+||... +.++. +
T Consensus 71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-------------~~~piilVGNK~DL~~~--~~v~~----~ 131 (189)
T cd04121 71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-------------PGVPKILVGNRLHLAFK--RQVAT----E 131 (189)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEECccchhc--cCCCH----H
Confidence 99999999999999999999999999999999997764 37999999999999765 56664 8
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+++.+++..+ ++|+| |||++|.||+++|+.+++.++.+
T Consensus 132 ~~~~~a~~~~-------~~~~e---------~SAk~g~~V~~~F~~l~~~i~~~ 169 (189)
T cd04121 132 QAQAYAERNG-------MTFFE---------VSPLCNFNITESFTELARIVLMR 169 (189)
T ss_pred HHHHHHHHcC-------CEEEE---------ecCCCCCCHHHHHHHHHHHHHHh
Confidence 8999999887 46888 99999999999999999877654
No 14
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=3.3e-33 Score=242.57 Aligned_cols=166 Identities=22% Similarity=0.319 Sum_probs=144.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+++|++|||||||+++|+.+.|...+.+|++.++. +.+.++ +..+.+.||||+|+++|..
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~-------------~~~~~l~iwDtaG~e~~~~ 68 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEID-------------TQRIELSLWDTSGSPYYDN 68 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEEC-------------CEEEEEEEEECCCchhhHh
Confidence 45689999999999999999999999999999999987764 556655 6789999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc----------c
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK----------E 167 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~----------~ 167 (333)
++..+++++|++|+|||++++.||+++ ..|+.++.... +++|++|||||+||.+. .
T Consensus 69 ~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~-------------~~~piilVgNK~DL~~~~~~~~~~~~~~ 135 (182)
T cd04172 69 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-------------PNTKMLLVGCKSDLRTDLTTLVELSNHR 135 (182)
T ss_pred hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-------------CCCCEEEEeEChhhhcChhhHHHHHhcC
Confidence 999999999999999999999999997 89999998874 36899999999999652 1
Q ss_pred CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcC-HHHHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY-DKEAVMKFFRMLI 230 (333)
Q Consensus 168 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~-v~~~~~~l~~~l~ 230 (333)
.+.|+. ++++++|+++++ ++|+| |||++|.| |+++|+.+.+.++
T Consensus 136 ~~~v~~----~~~~~~a~~~~~------~~~~E---------~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 136 QTPVSY----DQGANMAKQIGA------ATYIE---------CSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CCCCCH----HHHHHHHHHcCC------CEEEE---------CCcCCCCCCHHHHHHHHHHHHh
Confidence 245664 889999999985 36888 99999998 9999988887543
No 15
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-33 Score=227.97 Aligned_cols=169 Identities=22% Similarity=0.439 Sum_probs=156.4
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
.+.+|++|+|+.|.|||+|+++|+.++|......|+|++|..+.+.+. ++.++++||||+|||+|++
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVG-------------gK~vKLQIWDTAGQErFRS 73 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVG-------------GKTVKLQIWDTAGQERFRS 73 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeec-------------CcEEEEEEeecccHHHHHH
Confidence 567899999999999999999999999999999999999999999987 7899999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
..+.||++|-+.++|||+++++||+.+..|+..++.... +++-+|++|||.||... |+|+. .
T Consensus 74 VtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs------------~nIvviL~GnKkDL~~~--R~Vtf----l 135 (214)
T KOG0086|consen 74 VTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLAS------------PNIVVILCGNKKDLDPE--REVTF----L 135 (214)
T ss_pred HHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCC------------CcEEEEEeCChhhcChh--hhhhH----H
Confidence 999999999999999999999999999999999988753 57889999999999987 88885 8
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++..||.+..+. +.| +||++|.||++.|-.+.+.++.++-
T Consensus 136 EAs~FaqEnel~-------flE---------TSa~TGeNVEEaFl~c~~tIl~kIE 175 (214)
T KOG0086|consen 136 EASRFAQENELM-------FLE---------TSALTGENVEEAFLKCARTILNKIE 175 (214)
T ss_pred HHHhhhccccee-------eee---------ecccccccHHHHHHHHHHHHHHHHh
Confidence 899999988753 666 9999999999999999999988753
No 16
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=6.4e-33 Score=239.49 Aligned_cols=162 Identities=19% Similarity=0.327 Sum_probs=141.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+++|++|||||||+.+|+.+.|...+.+|++.++ .+.+.++ +..+.+.||||+|+++|..++.
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~-------------~~~v~l~i~Dt~G~~~~~~~~~ 67 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVD-------------GNTVNLGLWDTAGQEDYNRLRP 67 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEEC-------------CEEEEEEEEECCCCccccccch
Confidence 7999999999999999999999999999999998776 4455554 6789999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC--------CccC
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG--------TRGS 172 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~--------r~v~ 172 (333)
.+++++|++|+|||++++.||+++ ..|+.++.... .++|++|||||+||.+... +.++
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-------------~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~ 134 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA-------------PNVPIVLVGTKLDLRDDKQYLADHPGASPIT 134 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEeChhhccChhhhhhccCCCCCC
Confidence 999999999999999999999998 68999998764 2799999999999975421 2355
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+++.++++.+++ ++|+| |||++|.||+++|+.+++.+
T Consensus 135 ----~~~~~~~a~~~~~------~~~~E---------~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 135 ----TAQGEELRKQIGA------AAYIE---------CSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred ----HHHHHHHHHHcCC------CEEEE---------CCCCcccCHHHHHHHHHHHH
Confidence 4889999999884 25778 99999999999999998865
No 17
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.4e-33 Score=229.79 Aligned_cols=171 Identities=25% Similarity=0.442 Sum_probs=155.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
-++++.+|||++-||||||++.|+.++|.+-..||+|+|+..+.+++.+ +..+++++|||+|||+|++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~p------------g~riklqlwdtagqerfrs 73 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRP------------GYRIKLQLWDTAGQERFRS 73 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCC------------CcEEEEEEeeccchHHHHH
Confidence 3678999999999999999999999999999999999999999998854 8899999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCC-CCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGL-PVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~-~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
+...||+++-++++|||++|++||+++..|+.+...+.. ++ .+-+.|||+|+||... |+|+.
T Consensus 74 itksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q-----------~P~k~VFlLVGhKsDL~Sq--RqVt~---- 136 (213)
T KOG0091|consen 74 ITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQ-----------GPDKVVFLLVGHKSDLQSQ--RQVTA---- 136 (213)
T ss_pred HHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcC-----------CCCeeEEEEeccccchhhh--ccccH----
Confidence 999999999999999999999999999999999877742 23 4446799999999966 88985
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++++.+++.+|+. |+| +|||+|.||++.|..+.+++..++.
T Consensus 137 EEaEklAa~hgM~-------FVE---------TSak~g~NVeEAF~mlaqeIf~~i~ 177 (213)
T KOG0091|consen 137 EEAEKLAASHGMA-------FVE---------TSAKNGCNVEEAFDMLAQEIFQAIQ 177 (213)
T ss_pred HHHHHHHHhcCce-------EEE---------ecccCCCcHHHHHHHHHHHHHHHHh
Confidence 9999999999964 888 9999999999999999999887654
No 18
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.3e-32 Score=238.09 Aligned_cols=164 Identities=21% Similarity=0.296 Sum_probs=141.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
++||+++|++|||||||+++|+++.|...+.+|++.++. +.+.++ +..+.+.||||+|+++|..++
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~-------------~~~~~l~iwDt~G~~~~~~~~ 66 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEID-------------EQRIELSLWDTSGSPYYDNVR 66 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEEC-------------CEEEEEEEEECCCchhhhhcc
Confidence 479999999999999999999999999999999987764 566665 678999999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc----------cCC
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK----------EGT 169 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~----------~~r 169 (333)
..+++++|++|+|||+++++||+++ ..|+.++...+ +++|++|||||+||.+. ..+
T Consensus 67 ~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~-------------~~~~iilVgnK~DL~~~~~~~~~~~~~~~~ 133 (178)
T cd04131 67 PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC-------------PNTKVLLVGCKTDLRTDLSTLMELSHQRQA 133 (178)
T ss_pred hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC-------------CCCCEEEEEEChhhhcChhHHHHHHhcCCC
Confidence 9999999999999999999999996 89999998874 37899999999999642 124
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcC-HHHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY-DKEAVMKFFRMLI 230 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~-v~~~~~~l~~~l~ 230 (333)
.|+. ++++++++++++ ++|+| |||++|.| |+++|..+.+..+
T Consensus 134 ~v~~----~e~~~~a~~~~~------~~~~E---------~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 134 PVSY----EQGCAIAKQLGA------EIYLE---------CSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred CCCH----HHHHHHHHHhCC------CEEEE---------CccCcCCcCHHHHHHHHHHHHh
Confidence 5664 889999999985 25778 99999995 9999988887544
No 19
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=5.2e-32 Score=243.08 Aligned_cols=171 Identities=20% Similarity=0.274 Sum_probs=146.8
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|||+.|||||||+++|+++.|...+.+|++.++. +.+.++ +..+.+.||||+|+++|.
T Consensus 10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~-------------~~~v~l~iwDTaG~e~~~ 75 (232)
T cd04174 10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETE-------------EQRVELSLWDTSGSPYYD 75 (232)
T ss_pred ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEEC-------------CEEEEEEEEeCCCchhhH
Confidence 356789999999999999999999999999999999988774 445555 678999999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc----------
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK---------- 166 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~---------- 166 (333)
.+...+|+++|++|+|||++++.||+++ ..|+.++.... +++|+||||||+||...
T Consensus 76 ~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-------------~~~piilVgNK~DL~~~~~~~~~l~~~ 142 (232)
T cd04174 76 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC-------------PSTRILLIGCKTDLRTDLSTLMELSNQ 142 (232)
T ss_pred HHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEECcccccccchhhhhccc
Confidence 9999999999999999999999999984 89999998764 26899999999999642
Q ss_pred cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCc-CHHHHHHHHHHHHHHHHh
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR-YDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~-~v~~~~~~l~~~l~~~~~ 234 (333)
..+.|+. +++++||+++++. +|+| |||++|. ||+++|..++..+++...
T Consensus 143 ~~~~Vs~----~e~~~~a~~~~~~------~~~E---------tSAktg~~~V~e~F~~~~~~~~~~~~ 192 (232)
T cd04174 143 KQAPISY----EQGCALAKQLGAE------VYLE---------CSAFTSEKSIHSIFRSASLLCLNKLS 192 (232)
T ss_pred cCCcCCH----HHHHHHHHHcCCC------EEEE---------ccCCcCCcCHHHHHHHHHHHHHHhcc
Confidence 1255664 8899999999852 4777 9999997 799999999988776543
No 20
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-32 Score=221.92 Aligned_cols=169 Identities=25% Similarity=0.407 Sum_probs=152.6
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||++||+.|||||+|+++|+.+-|......|+|++|..+++.++ +..++++||||+|+|+|+++
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~-------------gekiklqiwdtagqerfrsi 72 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVN-------------GEKIKLQIWDTAGQERFRSI 72 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEEC-------------CeEEEEEEeeccchHHHHHH
Confidence 45899999999999999999999999999999999999999999998 78999999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
...||+.|+++|+|||++...||+-+-.|+.+|..+.. ..+--|+||||+|+.+. |+|.. +.
T Consensus 73 tqsyyrsahalilvydiscqpsfdclpewlreie~yan------------~kvlkilvgnk~d~~dr--revp~----qi 134 (213)
T KOG0095|consen 73 TQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN------------NKVLKILVGNKIDLADR--REVPQ----QI 134 (213)
T ss_pred HHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhh------------cceEEEeeccccchhhh--hhhhH----HH
Confidence 99999999999999999999999999999999998853 35667899999999987 77875 78
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHhc
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYF 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~~ 235 (333)
+++|++...+ =|.| +|||+..|++.+|.++.-.++.....
T Consensus 135 geefs~~qdm-------yfle---------tsakea~nve~lf~~~a~rli~~ar~ 174 (213)
T KOG0095|consen 135 GEEFSEAQDM-------YFLE---------TSAKEADNVEKLFLDLACRLISEARQ 174 (213)
T ss_pred HHHHHHhhhh-------hhhh---------hcccchhhHHHHHHHHHHHHHHHHHh
Confidence 8888887654 2666 99999999999999999888876553
No 21
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=5.3e-32 Score=236.73 Aligned_cols=165 Identities=21% Similarity=0.326 Sum_probs=141.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+++|+.|||||||+++|+.+.|...+.+|++..+. +.+.++ +..+.+.||||+|+++|..++
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~-------------~~~~~l~i~Dt~G~e~~~~l~ 68 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVD-------------GRTVSLNLWDTAGQEEYDRLR 68 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEEC-------------CEEEEEEEEECCCchhhhhhh
Confidence 589999999999999999999999999999999987654 445554 678999999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC----------C
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG----------T 169 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~----------r 169 (333)
..+++++|++|+|||++++.||+++. .|+.++.... .++|++|||||+||.+... +
T Consensus 69 ~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-------------~~~piilvgNK~DL~~~~~~~~~~~~~~~~ 135 (191)
T cd01875 69 TLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-------------PNVPILLVGTKKDLRNDADTLKKLKEQGQA 135 (191)
T ss_pred hhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-------------CCCCEEEEEeChhhhcChhhHHHHhhccCC
Confidence 99999999999999999999999996 6998887653 3799999999999975421 2
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.++ .+++++++++++. ++|+| |||++|.|++++|+.+++.++.
T Consensus 136 ~v~----~~~~~~~a~~~~~------~~~~e---------~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 136 PIT----PQQGGALAKQIHA------VKYLE---------CSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCC----HHHHHHHHHHcCC------cEEEE---------eCCCCCCCHHHHHHHHHHHHhc
Confidence 244 3789999998884 46778 9999999999999999887754
No 22
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=7.7e-33 Score=225.61 Aligned_cols=172 Identities=23% Similarity=0.373 Sum_probs=157.2
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
..+...|||+++|...||||||+-||+.+.|......|+-..|..+.+.+. +....+.||||+|||+
T Consensus 8 ~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~e-------------d~ra~L~IWDTAGQEr 74 (218)
T KOG0088|consen 8 DGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVE-------------DCRADLHIWDTAGQER 74 (218)
T ss_pred cCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccc-------------cceeeeeeeeccchHh
Confidence 346678999999999999999999999999999999999888988988876 6888999999999999
Q ss_pred hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
|..+-+.||++++++++|||++|++||+.++.|..+++.... ..+-+++||||+||.++ |.|+.
T Consensus 75 fHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlG------------nei~l~IVGNKiDLEee--R~Vt~-- 138 (218)
T KOG0088|consen 75 FHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLG------------NEIELLIVGNKIDLEEE--RQVTR-- 138 (218)
T ss_pred hhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhC------------CeeEEEEecCcccHHHh--hhhhH--
Confidence 999999999999999999999999999999999999998863 46889999999999987 88885
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++++.+++..|.. |+| +|||.+.||.++|+.+...+++...
T Consensus 139 --qeAe~YAesvGA~-------y~e---------TSAk~N~Gi~elFe~Lt~~MiE~~s 179 (218)
T KOG0088|consen 139 --QEAEAYAESVGAL-------YME---------TSAKDNVGISELFESLTAKMIEHSS 179 (218)
T ss_pred --HHHHHHHHhhchh-------hee---------cccccccCHHHHHHHHHHHHHHHhh
Confidence 9999999999965 777 9999999999999999999888654
No 23
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=9.8e-32 Score=229.07 Aligned_cols=164 Identities=24% Similarity=0.475 Sum_probs=144.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+|+|++|||||||+++|+++.|...+.+|++.++..+.+.++ +..+.+.||||+|+++|..++
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~~ 68 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVN-------------GQKIKLQIWDTAGQERFRAVT 68 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEEC-------------CEEEEEEEEECCCcHHHHHHH
Confidence 4799999999999999999999999988889999999887777765 567899999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++++|++|+|||++++.+|+.+..|+..+..... .++|+++||||+|+... +.++ .+++
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~iiiv~nK~Dl~~~--~~~~----~~~~ 130 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN------------PNTVIFLIGNKADLEAQ--RDVT----YEEA 130 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC------------CCCeEEEEEECcccccc--cCcC----HHHH
Confidence 9999999999999999999999999999998876632 36899999999999765 4555 3778
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.++++..+ ++|+| |||++|.|++++|..+++.+.+
T Consensus 131 ~~~~~~~~-------~~~~e---------~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 131 KQFADENG-------LLFLE---------CSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred HHHHHHcC-------CEEEE---------EECCCCCCHHHHHHHHHHHHhh
Confidence 88888776 46888 9999999999999999887754
No 24
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=3.6e-31 Score=228.25 Aligned_cols=177 Identities=25% Similarity=0.467 Sum_probs=148.7
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+.+||+++|++|||||||+++|+++.+...+.+|++.++..+.+.+........ ...+..+.+.||||+|+++|..+
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~Dt~G~~~~~~~ 79 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGT---LGRGQRIHLQLWDTAGQERFRSL 79 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCcccccc---ccCCCEEEEEEEeCCChHHHHHH
Confidence 568999999999999999999999999999999999999888777752111000 01245788999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++++|++|+|||+++++||.++..|+.++..... ..++|+++||||+|+.+. +.++. ++
T Consensus 80 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piiiv~nK~Dl~~~--~~v~~----~~ 142 (180)
T cd04127 80 TTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-----------CENPDIVLCGNKADLEDQ--RQVSE----EQ 142 (180)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCcEEEEEeCccchhc--CccCH----HH
Confidence 99999999999999999999999999999999977632 136899999999999865 45553 77
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+.++++.++ ++|+| +||++|.|++++|+.+.+.++++
T Consensus 143 ~~~~~~~~~-------~~~~e---------~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 143 AKALADKYG-------IPYFE---------TSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred HHHHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHhh
Confidence 899998887 46888 99999999999999999887654
No 25
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-33 Score=228.18 Aligned_cols=180 Identities=27% Similarity=0.457 Sum_probs=160.2
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
-.+.||.+.+|++||||||++++++.+.|......|+|+||..|.+.|+.++++. +..+..+.+++|||+|||+|+
T Consensus 6 ydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g----~gr~~rihLQlWDTAGQERFR 81 (219)
T KOG0081|consen 6 YDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGG----GGRGQRIHLQLWDTAGQERFR 81 (219)
T ss_pred HHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCC----CCcceEEEEeeeccccHHHHH
Confidence 3466899999999999999999999999999999999999999999998655432 233677899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
++...|++.|-+++++||+++..||.++..|+.+++.+.- + ++.-||++|||+||.+. |.|+.
T Consensus 82 SLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAY-c----------E~PDivlcGNK~DL~~~--R~Vs~---- 144 (219)
T KOG0081|consen 82 SLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAY-C----------ENPDIVLCGNKADLEDQ--RVVSE---- 144 (219)
T ss_pred HHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhc-c----------CCCCEEEEcCccchhhh--hhhhH----
Confidence 9999999999999999999999999999999999987743 1 36679999999999987 77874
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
+++.++|+++| +|||| +||-+|.||++.++.++..+.+++.
T Consensus 145 ~qa~~La~kyg-------lPYfE---------TSA~tg~Nv~kave~LldlvM~Rie 185 (219)
T KOG0081|consen 145 DQAAALADKYG-------LPYFE---------TSACTGTNVEKAVELLLDLVMKRIE 185 (219)
T ss_pred HHHHHHHHHhC-------CCeee---------eccccCcCHHHHHHHHHHHHHHHHH
Confidence 89999999999 68999 9999999999999999998887754
No 26
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.98 E-value=4.3e-31 Score=227.14 Aligned_cols=165 Identities=18% Similarity=0.307 Sum_probs=142.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+|+|++|||||||+++|+++.|...+.+|++..+ .+.+.++ +..+.+.||||+|+++|..++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~l~ 67 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARID-------------NEPALLDILDTAGQAEFTAMR 67 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEEC-------------CEEEEEEEEeCCCchhhHHHh
Confidence 47999999999999999999999999888889988655 3445554 567899999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++.+|++|+|||++++.||+.+..|+..+..... ..++|++|||||+|+... +.++. +++
T Consensus 68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-----------~~~~piilvgNK~Dl~~~--~~v~~----~~~ 130 (172)
T cd04141 68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-----------TEDIPLVLVGNKVDLESQ--RQVTT----EEG 130 (172)
T ss_pred HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEEChhhhhc--CccCH----HHH
Confidence 9999999999999999999999999999888876532 136999999999999765 56664 788
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+++++.++ ++|+| |||++|.||+++|+.+++.+.+.
T Consensus 131 ~~~a~~~~-------~~~~e---------~Sa~~~~~v~~~f~~l~~~~~~~ 166 (172)
T cd04141 131 RNLAREFN-------CPFFE---------TSAALRHYIDDAFHGLVREIRRK 166 (172)
T ss_pred HHHHHHhC-------CEEEE---------EecCCCCCHHHHHHHHHHHHHHh
Confidence 89998877 56888 99999999999999999887753
No 27
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=8.9e-31 Score=230.60 Aligned_cols=171 Identities=29% Similarity=0.519 Sum_probs=146.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.++. +..+.+.||||+|+++|..++.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~------------~~~~~l~l~Dt~G~~~~~~~~~ 68 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDP------------NTVVRLQLWDIAGQERFGGMTR 68 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECC------------CCEEEEEEEECCCchhhhhhHH
Confidence 5999999999999999999999999888999999998888877642 4678999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++|+|||++++.+|+.+..|+.++...... +...++|+||||||+|+.+. +.+. .+++.
T Consensus 69 ~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~--------~~~~~~piilv~NK~Dl~~~--~~~~----~~~~~ 134 (201)
T cd04107 69 VYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTL--------PNGEPIPCLLLANKCDLKKR--LAKD----GEQMD 134 (201)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcc--------cCCCCCcEEEEEECCCcccc--cccC----HHHHH
Confidence 9999999999999999999999999999988764321 11247899999999999753 4455 37889
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++++..++ ++|+| |||++|.|++++|+.+++.+++..
T Consensus 135 ~~~~~~~~------~~~~e---------~Sak~~~~v~e~f~~l~~~l~~~~ 171 (201)
T cd04107 135 QFCKENGF------IGWFE---------TSAKEGINIEEAMRFLVKNILAND 171 (201)
T ss_pred HHHHHcCC------ceEEE---------EeCCCCCCHHHHHHHHHHHHHHhc
Confidence 99998874 35777 999999999999999999887653
No 28
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.98 E-value=3.4e-31 Score=228.49 Aligned_cols=162 Identities=19% Similarity=0.284 Sum_probs=138.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|||++|||||||+++|+++.|...+.+|++.++. +.+.++ +..+.+.||||+|+++|..++.
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~~~ 67 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIG-------------GEPYTLGLFDTAGQEDYDRLRP 67 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEEC-------------CEEEEEEEEECCCccchhhhhh
Confidence 79999999999999999999999998889999987764 345554 5678999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc----------CCc
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE----------GTR 170 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~----------~r~ 170 (333)
.+++++|++|+|||++++++|+++. .|+.++.... .++|+||||||+|+.... .+.
T Consensus 68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~-------------~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~ 134 (175)
T cd01874 68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-------------PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP 134 (175)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEECHhhhhChhhHHHhhhccCCC
Confidence 9999999999999999999999996 6999887753 368999999999986542 144
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
|+ .+++++++++.+. ++|+| |||++|.|++++|+.++..+
T Consensus 135 v~----~~~~~~~a~~~~~------~~~~e---------~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 135 IT----PETGEKLARDLKA------VKYVE---------CSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred cC----HHHHHHHHHHhCC------cEEEE---------ecCCCCCCHHHHHHHHHHHh
Confidence 55 3788999988773 45777 99999999999999888743
No 29
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.97 E-value=7.3e-31 Score=227.89 Aligned_cols=167 Identities=19% Similarity=0.359 Sum_probs=140.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+++|+.|||||||+++|+++.|...+.+|+|.++..+.+.++ +..+.+.||||+|+++|..++.
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~-------------~~~~~l~iwDt~G~~~~~~~~~ 67 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIR-------------GTEITFSIWDLGGQREFINMLP 67 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEEC-------------CEEEEEEEEeCCCchhHHHhhH
Confidence 589999999999999999999999998899999999988888776 5688999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++|+|||++++.||+++..|+.++..... ..+| |+||||+|+..... ......+.++++
T Consensus 68 ~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~------------~~~p-ilVgnK~Dl~~~~~-~~~~~~~~~~~~ 133 (182)
T cd04128 68 LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK------------TAIP-ILVGTKYDLFADLP-PEEQEEITKQAR 133 (182)
T ss_pred HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC------------CCCE-EEEEEchhcccccc-chhhhhhHHHHH
Confidence 999999999999999999999999999999977632 2466 67899999963210 000011236788
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
++++.++ ++|+| |||++|.|++++|+.+.+.+..
T Consensus 134 ~~a~~~~-------~~~~e---------~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 134 KYAKAMK-------APLIF---------CSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred HHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHh
Confidence 8888877 46777 9999999999999999887764
No 30
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=7.1e-31 Score=223.09 Aligned_cols=160 Identities=28% Similarity=0.472 Sum_probs=141.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+++|++|||||||+++|+++.|...+.+|++.++..+.+.++ +..+.+.|||++|++++..++.
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~D~~g~~~~~~~~~ 67 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVD-------------GIKVRIQIWDTAGQERYQTITK 67 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-------------CEEEEEEEEeCCCcHhHHhhHH
Confidence 589999999999999999999999988889999998888888775 5678999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++++|||+++++||+.+..|+.++..... .++|+++||||+|+... +.+.. +++.
T Consensus 68 ~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~------------~~~~iilvgnK~Dl~~~--~~v~~----~~~~ 129 (161)
T cd04117 68 QYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAP------------EGVQKILIGNKADEEQK--RQVGD----EQGN 129 (161)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC------------CCCeEEEEEECcccccc--cCCCH----HHHH
Confidence 999999999999999999999999999999876632 36899999999999765 55663 7889
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.+++..+ ++|+| |||++|.|++++|+.|.+.
T Consensus 130 ~~~~~~~-------~~~~e---------~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 130 KLAKEYG-------MDFFE---------TSACTNSNIKESFTRLTEL 160 (161)
T ss_pred HHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHhh
Confidence 9988776 56888 9999999999999988764
No 31
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.97 E-value=1.1e-30 Score=222.92 Aligned_cols=165 Identities=24% Similarity=0.433 Sum_probs=145.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+|+|++|||||||+++|+++.|...+.+|++.++..+.+.++ +..+.+.+|||+|++++..+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~l~D~~g~~~~~~~ 68 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELD-------------GKKIKLQIWDTAGQERFRTI 68 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEEC-------------CEEEEEEEEeCCchHHHHHH
Confidence 45899999999999999999999999999999999998888888775 56789999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++++|++|+|||++++++|+.+..|+..+..... .++|+++||||+|+.+. +.+. .++
T Consensus 69 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~p~iiv~nK~Dl~~~--~~~~----~~~ 130 (167)
T cd01867 69 TTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHAS------------EDVERMLVGNKCDMEEK--RVVS----KEE 130 (167)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC------------CCCcEEEEEECcccccc--cCCC----HHH
Confidence 99999999999999999999999999999999987632 36899999999999864 4444 367
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+.++++.++ ++|+| |||++|.|++++|+.+.+.++.
T Consensus 131 ~~~~~~~~~-------~~~~~---------~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 131 GEALADEYG-------IKFLE---------TSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHh
Confidence 888888776 56888 9999999999999999988764
No 32
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.6e-31 Score=212.26 Aligned_cols=169 Identities=24% Similarity=0.462 Sum_probs=154.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
.+.+|.+|+|+.|||||+|++.|+..+|...-+.|+|++|..+.+++. +..++++||||+|+++|+.
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievs-------------gqkiklqiwdtagqerfra 75 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS-------------GQKIKLQIWDTAGQERFRA 75 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEec-------------CcEEEEEEeecccHHHHHH
Confidence 467899999999999999999999999999999999999999999987 7899999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
..+.||+++.+.++|||++.+.++.++..|+...+... +++.-|+++|||.||... |.|. ++
T Consensus 76 vtrsyyrgaagalmvyditrrstynhlsswl~dar~lt------------npnt~i~lignkadle~q--rdv~----ye 137 (215)
T KOG0097|consen 76 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT------------NPNTVIFLIGNKADLESQ--RDVT----YE 137 (215)
T ss_pred HHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccC------------CCceEEEEecchhhhhhc--ccCc----HH
Confidence 99999999999999999999999999999999887764 367889999999999977 6777 69
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++++|+++.|+. |.| +|||+|.|+++.|-+....+..+..
T Consensus 138 eak~faeengl~-------fle---------~saktg~nvedafle~akkiyqniq 177 (215)
T KOG0097|consen 138 EAKEFAEENGLM-------FLE---------ASAKTGQNVEDAFLETAKKIYQNIQ 177 (215)
T ss_pred HHHHHHhhcCeE-------EEE---------ecccccCcHHHHHHHHHHHHHHhhh
Confidence 999999999964 777 9999999999999888887776643
No 33
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.97 E-value=2e-30 Score=220.93 Aligned_cols=163 Identities=26% Similarity=0.441 Sum_probs=141.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+..+ +..+.+.+|||+|++++..++.
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~l~Dt~g~~~~~~~~~ 68 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRN-------------DKRVKLQIWDTAGQERYRTITT 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-------------CEEEEEEEEECCChHHHHHHHH
Confidence 799999999999999999999999988888999988877777654 5678999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++.+|++++|||++++++|+.+..|+..+..... .++|++|||||+|+.+. +.+. .+++.
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piivv~nK~Dl~~~--~~~~----~~~~~ 130 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW------------DNAQVILVGNKCDMEDE--RVVS----SERGR 130 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC------------CCCCEEEEEECcccCcc--cccC----HHHHH
Confidence 999999999999999999999999999999977642 36899999999999765 4444 36778
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
++++.++ ++++| +||++|.|++++|+.+...+.+
T Consensus 131 ~~~~~~~-------~~~~~---------~Sa~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 131 QLADQLG-------FEFFE---------ASAKENINVKQVFERLVDIICD 164 (165)
T ss_pred HHHHHcC-------CEEEE---------EECCCCCCHHHHHHHHHHHHHh
Confidence 8888776 46777 9999999999999999887643
No 34
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=1.7e-30 Score=231.42 Aligned_cols=168 Identities=21% Similarity=0.268 Sum_probs=145.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.|...+.+|++.++..+.+.+++ +..+.+.||||+|++.+..++.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~------------~~~~~~~i~Dt~G~~~~~~l~~ 68 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPG------------NLNVTLQVWDIGGQSIGGKMLD 68 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCC------------CCEEEEEEEECCCcHHHHHHHH
Confidence 5999999999999999999999999999999999999888888752 3578999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++|+|||+++++||+++..|+..+...... ...++|+++||||+|+.+. +.++. ++++
T Consensus 69 ~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~---------~~~~~piilVgNK~DL~~~--~~v~~----~~~~ 133 (215)
T cd04109 69 KYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKS---------SETQPLVVLVGNKTDLEHN--RTVKD----DKHA 133 (215)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccc---------cCCCceEEEEEECcccccc--cccCH----HHHH
Confidence 9999999999999999999999999999999876421 0135789999999999754 55653 7788
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++++.++ +++++ +||++|.|++++|+.+.+.+...
T Consensus 134 ~~~~~~~-------~~~~~---------iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 134 RFAQANG-------MESCL---------VSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred HHHHHcC-------CEEEE---------EECCCCCCHHHHHHHHHHHHHhc
Confidence 8988877 45777 99999999999999998877653
No 35
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=5.1e-30 Score=227.75 Aligned_cols=181 Identities=23% Similarity=0.409 Sum_probs=151.9
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+++||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.+.+ +..+.++||||+|++++..+
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~------------~~~~~l~i~Dt~G~~~~~~~ 68 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEP------------GVRIKLQLWDTAGQERFRSI 68 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECC------------CCEEEEEEEeCCcchhHHHH
Confidence 368999999999999999999999999888889999999888887632 56789999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
...+++++|++|+|||++++.||+++..|+.++..... ...+|++|||||+|+... +.+.. ++
T Consensus 69 ~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~-----------~~~~~iilvgNK~Dl~~~--~~v~~----~~ 131 (211)
T cd04111 69 TRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQ-----------PHRPVFILVGHKCDLESQ--RQVTR----EE 131 (211)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCeEEEEEEccccccc--cccCH----HH
Confidence 99999999999999999999999999999999977632 125789999999999864 45553 77
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHhcccCCCCCCCCC
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEMPAPNPWS 246 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 246 (333)
+.++++.++ ++|+| +||++|.|++++|+.+.+.+.++.. ........+|.
T Consensus 132 ~~~~~~~~~-------~~~~e---------~Sak~g~~v~e~f~~l~~~~~~~~~-~~~~~~~~~~~ 181 (211)
T cd04111 132 AEKLAKDLG-------MKYIE---------TSARTGDNVEEAFELLTQEIYERIK-RGELCALDGWD 181 (211)
T ss_pred HHHHHHHhC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHHHhh-cCCCCcccccc
Confidence 888988877 46888 9999999999999999998876643 22334444443
No 36
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.97 E-value=2e-30 Score=219.85 Aligned_cols=167 Identities=28% Similarity=0.496 Sum_probs=143.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.++ +..+.++||||+|++++..++.
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~~~ 67 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVR-------------NKEVRVNFFDLSGHPEYLEVRN 67 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-------------CeEEEEEEEECCccHHHHHHHH
Confidence 599999999999999999999999999999999999988888776 5788999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++|+|||++++.+|+.+..|+.++....... ....++|+++|+||+|+..+ +.++ .++++
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~-------~~~~~~piilv~nK~Dl~~~--~~~~----~~~~~ 134 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPH-------GNMENIVVVVCANKIDLTKH--RAVS----EDEGR 134 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccc-------ccCCCceEEEEEEchhcccc--cccC----HHHHH
Confidence 99999999999999999999999999999998764210 01236899999999999753 3444 37777
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.++...+ ++|+| +||++|.|++++++.+++.++
T Consensus 135 ~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 135 LWAESKG-------FKYFE---------TSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred HHHHHcC-------CeEEE---------EECCCCCCHHHHHHHHHHHHh
Confidence 8888776 45777 999999999999999988765
No 37
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=1.2e-30 Score=220.84 Aligned_cols=161 Identities=32% Similarity=0.579 Sum_probs=147.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
||+|+|+.+||||||+++|.++.+...+.+|+|.+...+.+.++ +..+.++|||++|+++|..++..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~D~~g~~~~~~~~~~ 67 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSID-------------GKPVNLEIWDTSGQERFDSLRDI 67 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEET-------------TEEEEEEEEEETTSGGGHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccc-------------ccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999999999886 68899999999999999999999
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
+++++|++|+|||+++++||+++..|+..+..... .++|++|||||.|+.+. +.++. +++++
T Consensus 68 ~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~------------~~~~iivvg~K~D~~~~--~~v~~----~~~~~ 129 (162)
T PF00071_consen 68 FYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP------------EDIPIIVVGNKSDLSDE--REVSV----EEAQE 129 (162)
T ss_dssp HHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST------------TTSEEEEEEETTTGGGG--SSSCH----HHHHH
T ss_pred ccccccccccccccccccccccccccccccccccc------------ccccceeeecccccccc--ccchh----hHHHH
Confidence 99999999999999999999999999999998853 36899999999999874 67774 88999
Q ss_pred HHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 183 WVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 183 ~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
++++++ ++|+| |||+++.|+.++|..+++.++
T Consensus 130 ~~~~~~-------~~~~e---------~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 130 FAKELG-------VPYFE---------VSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp HHHHTT-------SEEEE---------EBTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHhC-------CEEEE---------EECCCCCCHHHHHHHHHHHHh
Confidence 999998 46888 999999999999999988775
No 38
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.97 E-value=1.7e-30 Score=231.95 Aligned_cols=166 Identities=20% Similarity=0.316 Sum_probs=140.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
++||+|||+.|||||||+++|+++.|...+.+|++.++. ..+.++ +..+.+.||||+|++.|..++
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~-------------~~~v~L~iwDt~G~e~~~~l~ 66 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEID-------------KRRIELNMWDTSGSSYYDNVR 66 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEEC-------------CEEEEEEEEeCCCcHHHHHHh
Confidence 379999999999999999999999999999999987774 455554 678999999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc----------CC
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE----------GT 169 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~----------~r 169 (333)
..+|.++|++|+|||++++++|+++ ..|..++.... +++|+||||||+||.... ..
T Consensus 67 ~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-------------~~~piiLVgnK~DL~~~~~~~~~~~~~~~~ 133 (222)
T cd04173 67 PLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-------------PNAKVVLVGCKLDMRTDLATLRELSKQRLI 133 (222)
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-------------CCCCEEEEEECcccccchhhhhhhhhccCC
Confidence 9999999999999999999999998 57888776654 379999999999997531 01
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcC-HHHHHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY-DKEAVMKFFRMLIRR 232 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~-v~~~~~~l~~~l~~~ 232 (333)
.|+ .+++..++++.|+ ++|+| |||+++.| |+++|+.+....+.+
T Consensus 134 pIs----~e~g~~~ak~~~~------~~y~E---------~SAk~~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 134 PVT----HEQGTVLAKQVGA------VSYVE---------CSSRSSERSVRDVFHVATVASLGR 178 (222)
T ss_pred ccC----HHHHHHHHHHcCC------CEEEE---------cCCCcCCcCHHHHHHHHHHHHHhc
Confidence 244 3789999999985 36888 99999985 999998888876543
No 39
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.97 E-value=3.1e-30 Score=219.54 Aligned_cols=163 Identities=26% Similarity=0.496 Sum_probs=143.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.++ +..+.+.+||++|++++..++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~D~~G~~~~~~~~ 68 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD-------------GKTIKLQIWDTAGQERFRTIT 68 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-------------CEEEEEEEEECCCcHhHHHHH
Confidence 4799999999999999999999999988888999988888888775 567889999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++.+|++|+|||+++++||.++..|+..+..... .++|+++||||+|+... +.+. .+++
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~------------~~~~~iiv~nK~Dl~~~--~~~~----~~~~ 130 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYAS------------ENVNKLLVGNKCDLTDK--RVVD----YSEA 130 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC------------CCCcEEEEEEChhcccc--cCCC----HHHH
Confidence 9999999999999999999999999999999977642 36899999999999765 4454 3778
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
..+++.++ ++|+| +||++|.|++++|+.+.+.+.
T Consensus 131 ~~~~~~~~-------~~~~~---------~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 131 QEFADELG-------IPFLE---------TSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred HHHHHHcC-------CeEEE---------EECCCCcCHHHHHHHHHHHHH
Confidence 88888776 56888 999999999999999988765
No 40
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.97 E-value=3.3e-30 Score=221.22 Aligned_cols=165 Identities=22% Similarity=0.316 Sum_probs=141.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
||++||++|||||||+++|+++.|...+.+|++.++..+.+.++ +..+.++||||+|+++|..++..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~~~~ 68 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEIL-------------GVPFSLQLWDTAGQERFKCIAST 68 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-------------CEEEEEEEEeCCChHHHHhhHHH
Confidence 89999999999999999999999999999999999988888775 56789999999999999999999
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
+++++|++|+|||++++.+|+.+..|+.++.+... ..++|+++||||+|+.+.....+. .+++.+
T Consensus 69 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~~iilVgnK~Dl~~~~~~~~~----~~~~~~ 133 (170)
T cd04108 69 YYRGAQAIIIVFDLTDVASLEHTRQWLEDALKEND-----------PSSVLLFLVGTKKDLSSPAQYALM----EQDAIK 133 (170)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-----------CCCCeEEEEEEChhcCcccccccc----HHHHHH
Confidence 99999999999999999999999999999866532 125789999999999755322223 366778
Q ss_pred HHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 183 WVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 183 ~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+++.++ ++|+| +||++|.|++++|+.+.+.+.+
T Consensus 134 ~~~~~~-------~~~~e---------~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 134 LAAEMQ-------AEYWS---------VSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred HHHHcC-------CeEEE---------EECCCCCCHHHHHHHHHHHHHH
Confidence 887776 45777 9999999999999999877643
No 41
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.97 E-value=2.6e-30 Score=222.73 Aligned_cols=162 Identities=20% Similarity=0.287 Sum_probs=136.8
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+|+|++|||||||+.+|+++.|...+.+|++..+ .+.+.++ +..+.+.||||+|+++|..++
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~~ 66 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD-------------GKPVNLGLWDTAGQEDYDRLR 66 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEEC-------------CEEEEEEEEECCCchhhhhhh
Confidence 37999999999999999999999999988999886544 4445554 577899999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc----------CC
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE----------GT 169 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~----------~r 169 (333)
..+++++|++|+|||+++++||+++. .|+..+.... .++|++|||||+|+.+.. .+
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-------------~~~piilvgnK~Dl~~~~~~~~~~~~~~~~ 133 (174)
T cd01871 67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-------------PNTPIILVGTKLDLRDDKDTIEKLKEKKLT 133 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEeeChhhccChhhHHHHhhccCC
Confidence 99999999999999999999999995 6988887653 379999999999996531 13
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.++ .+++.+++++++. ++|+| |||++|.|++++|+.+.+.
T Consensus 134 ~v~----~~~~~~~~~~~~~------~~~~e---------~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 134 PIT----YPQGLAMAKEIGA------VKYLE---------CSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred CCC----HHHHHHHHHHcCC------cEEEE---------ecccccCCHHHHHHHHHHh
Confidence 455 4889999999884 46788 9999999999999888753
No 42
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=3.3e-32 Score=216.10 Aligned_cols=163 Identities=23% Similarity=0.420 Sum_probs=148.3
Q ss_pred EEECCCCCCHHHHHHHHHcCCCCC-CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhh
Q 019959 25 LVVGDSGVGKTSLVNLIVKGSSFS-RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSIL 103 (333)
Q Consensus 25 ~ivG~~~vGKSSLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~ 103 (333)
+++|++++|||+|+-||..+.|.. ....|+|++|..+.+.++ +..+++++|||+|||+|++....|
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~-------------~~kvklqiwdtagqerfrsvt~ay 67 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMD-------------DKKVKLQIWDTAGQERFRSVTHAY 67 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccC-------------CcEEEEEEeeccchHHHhhhhHhh
Confidence 378999999999999999887754 456789999999999887 789999999999999999999999
Q ss_pred ccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHH
Q 019959 104 YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQW 183 (333)
Q Consensus 104 ~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~ 183 (333)
|+.+|+++++||+++..||++++.|+.+|.++.. ..+.+.++|||+|+.++ |.|.. ++++.+
T Consensus 68 yrda~allllydiankasfdn~~~wlsei~ey~k------------~~v~l~llgnk~d~a~e--r~v~~----ddg~kl 129 (192)
T KOG0083|consen 68 YRDADALLLLYDIANKASFDNCQAWLSEIHEYAK------------EAVALMLLGNKCDLAHE--RAVKR----DDGEKL 129 (192)
T ss_pred hcccceeeeeeecccchhHHHHHHHHHHHHHHHH------------hhHhHhhhccccccchh--hcccc----chHHHH
Confidence 9999999999999999999999999999999865 46889999999999887 77775 889999
Q ss_pred HHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 184 VEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 184 ~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++.+| +||.| +|||+|.|++..|..+.+++.+..+
T Consensus 130 a~~y~-------ipfme---------tsaktg~nvd~af~~ia~~l~k~~~ 164 (192)
T KOG0083|consen 130 AEAYG-------IPFME---------TSAKTGFNVDLAFLAIAEELKKLKM 164 (192)
T ss_pred HHHHC-------CCcee---------ccccccccHhHHHHHHHHHHHHhcc
Confidence 99999 68999 9999999999999999999887654
No 43
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.97 E-value=2.9e-30 Score=218.35 Aligned_cols=162 Identities=24% Similarity=0.366 Sum_probs=136.6
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+|+|++|||||||+++|+++.+...+.+|++. ...+.+.++ +..+.+.||||+|+++|..++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQIEVD-------------GQQCMLEILDTAGTEQFTAMR 66 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhh-hEEEEEEEC-------------CEEEEEEEEECCCccccchHH
Confidence 379999999999999999999999998888888773 445566655 567889999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++++|++|+|||++++.+|+.+..|+..+..... ..++|++|||||+|+... +.+. .+++
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~--~~~~----~~~~ 129 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-----------TENVPMVLVGNKCDLEDE--RVVS----REEG 129 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECcccccc--ceec----HHHH
Confidence 9999999999999999999999999999999877632 137899999999999764 3444 3667
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
..+++.++ ++|+| +||++|.|++++|+.+.+.+
T Consensus 130 ~~~~~~~~-------~~~~~---------~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 130 QALARQWG-------CPFYE---------TSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred HHHHHHcC-------CeEEE---------ecCCCCCCHHHHHHHHHHhc
Confidence 77877766 46888 99999999999999887654
No 44
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=4.2e-30 Score=229.51 Aligned_cols=163 Identities=23% Similarity=0.343 Sum_probs=141.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|||++|||||||+++|+.+.+...+.+|+|.++....+..+ +..+.+.||||+|+++|..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~ 77 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-------------CGKIRFYCWDTAGQEKFGG 77 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEEC-------------CeEEEEEEEECCCchhhhh
Confidence 667899999999999999999999999999999999999887777665 4578999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++++|++|+|||++++.+|+.+..|+.++.... .++|++|||||+|+.. +.+.. +
T Consensus 78 ~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~-------------~~~piilvgNK~Dl~~---~~v~~----~ 137 (219)
T PLN03071 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-------------ENIPIVLCGNKVDVKN---RQVKA----K 137 (219)
T ss_pred hhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC-------------CCCcEEEEEEchhhhh---ccCCH----H
Confidence 99999999999999999999999999999999998764 3799999999999964 33432 3
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.+ ++++..+ ++|+| |||++|.|++++|+.+++.+..
T Consensus 138 ~~-~~~~~~~-------~~~~e---------~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 138 QV-TFHRKKN-------LQYYE---------ISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred HH-HHHHhcC-------CEEEE---------cCCCCCCCHHHHHHHHHHHHHc
Confidence 33 6666554 56888 9999999999999999887754
No 45
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.97 E-value=4.9e-30 Score=217.86 Aligned_cols=162 Identities=22% Similarity=0.358 Sum_probs=137.8
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
++||+|+|++|||||||+++|+.+.+...+.+|++..+ .+.+.++ +..+.+.||||+|+++|..++
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~~ 66 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVD-------------GQQCMLEILDTAGTEQFTAMR 66 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEEC-------------CEEEEEEEEECCCcccchhHH
Confidence 47999999999999999999999988888888887665 3556554 567889999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++.+|++|+|||+++..+|+.+..|+..+..... ..++|++|||||+|+... +.+. .+++
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~--~~~~----~~~~ 129 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-----------TEDVPMILVGNKCDLEDE--RVVG----KEQG 129 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECCcchhc--cEEc----HHHH
Confidence 9999999999999999999999999999999876532 247999999999999764 3444 2567
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.++++.++ ++|+| |||++|.|++++|+.+.+.+
T Consensus 130 ~~~~~~~~-------~~~~~---------~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 130 QNLARQWG-------CAFLE---------TSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred HHHHHHhC-------CEEEE---------eeCCCCCCHHHHHHHHHHHh
Confidence 77887776 46888 99999999999999998765
No 46
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=1.1e-29 Score=223.44 Aligned_cols=167 Identities=26% Similarity=0.430 Sum_probs=146.5
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+.+||+|+|++|||||||+++|++..+...+.+|++.++..+.+.++ +..+.+.|||++|++.+..+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~l~D~~G~~~~~~~ 71 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEIN-------------GERVKLQIWDTAGQERFRTI 71 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEEC-------------CEEEEEEEEeCCCchhHHHH
Confidence 46899999999999999999999999988889999998888887765 56788999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++++|++|+|||++++++|+.+..|+..+.... ..+|++|||||+|+... +.+. .++
T Consensus 72 ~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~-------------~~~piivVgNK~Dl~~~--~~~~----~~~ 132 (199)
T cd04110 72 TSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC-------------DDVCKVLVGNKNDDPER--KVVE----TED 132 (199)
T ss_pred HHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEECcccccc--cccC----HHH
Confidence 9999999999999999999999999999999987764 36899999999999764 3444 377
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
+..+++.++ ++|+| +||++|.|++++|+.+.+.+++...
T Consensus 133 ~~~~~~~~~-------~~~~e---------~Sa~~~~gi~~lf~~l~~~~~~~~~ 171 (199)
T cd04110 133 AYKFAGQMG-------ISLFE---------TSAKENINVEEMFNCITELVLRAKK 171 (199)
T ss_pred HHHHHHHcC-------CEEEE---------EECCCCcCHHHHHHHHHHHHHHhhh
Confidence 888887766 45778 9999999999999999999887644
No 47
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1.6e-29 Score=220.08 Aligned_cols=165 Identities=25% Similarity=0.472 Sum_probs=144.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.++ +..+.+.+|||+|++++..++.
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~Dt~g~~~~~~~~~ 67 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIE-------------NKIIKLQIWDTNGQERFRSLNN 67 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-------------CEEEEEEEEECCCcHHHHhhHH
Confidence 589999999999999999999999988889999998888888775 4578899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++|+|||++++++|+++..|+.++..... .++|++|||||+|+.+. +.+.. +.++
T Consensus 68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~------------~~~~~ivv~nK~Dl~~~--~~v~~----~~~~ 129 (188)
T cd04125 68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAR------------ENVIKVIVANKSDLVNN--KVVDS----NIAK 129 (188)
T ss_pred HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC------------CCCeEEEEEECCCCccc--ccCCH----HHHH
Confidence 999999999999999999999999999999987642 35899999999999865 44553 6778
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
.+++..+ ++|+| +||++|.|++++|+.+++.+.++.
T Consensus 130 ~~~~~~~-------~~~~e---------vSa~~~~~i~~~f~~l~~~~~~~~ 165 (188)
T cd04125 130 SFCDSLN-------IPFFE---------TSAKQSINVEEAFILLVKLIIKRL 165 (188)
T ss_pred HHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHHHh
Confidence 8888776 46788 999999999999999999987654
No 48
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=8.3e-30 Score=222.48 Aligned_cols=169 Identities=24% Similarity=0.337 Sum_probs=141.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
||+|+|++|||||||+++|+.+.|...+.+|++..+ .+.+.++ +..+.++||||+|+++|..++..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~~~~ 66 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVD-------------GQPCMLEVLDTAGQEEYTALRDQ 66 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEEC-------------CEEEEEEEEECCCchhhHHHHHH
Confidence 689999999999999999999999888888887655 3444454 56788999999999999999999
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
+++.+|++|+|||+++..||+.+..|+..+...... ...++|++|||||+|+.+. +.+.. +++..
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~---------~~~~~piilvgNK~Dl~~~--~~v~~----~~~~~ 131 (190)
T cd04144 67 WIREGEGFILVYSITSRSTFERVERFREQIQRVKDE---------SAADVPIMIVGNKCDKVYE--REVST----EEGAA 131 (190)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcc---------cCCCCCEEEEEEChhcccc--CccCH----HHHHH
Confidence 999999999999999999999999999998765321 0136899999999999764 45553 66778
Q ss_pred HHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHhcc
Q 019959 183 WVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFS 236 (333)
Q Consensus 183 ~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~~~ 236 (333)
+++.++ ++|+| +||++|.|++++|+.+.+.+..+....
T Consensus 132 ~~~~~~-------~~~~e---------~SAk~~~~v~~l~~~l~~~l~~~~~~~ 169 (190)
T cd04144 132 LARRLG-------CEFIE---------ASAKTNVNVERAFYTLVRALRQQRQGG 169 (190)
T ss_pred HHHHhC-------CEEEE---------ecCCCCCCHHHHHHHHHHHHHHhhccc
Confidence 888777 45778 999999999999999999887766543
No 49
>PLN03110 Rab GTPase; Provisional
Probab=99.97 E-value=1.4e-29 Score=225.68 Aligned_cols=169 Identities=23% Similarity=0.422 Sum_probs=148.9
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
..+.+||+|||++|||||||+++|++..+...+.+|++.++..+.+.++ +..+.+.||||+|++++.
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~-------------~~~~~l~l~Dt~G~~~~~ 75 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE-------------GKTVKAQIWDTAGQERYR 75 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEEC-------------CEEEEEEEEECCCcHHHH
Confidence 4567999999999999999999999999988889999999988888876 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.++++|+|||++++.+|+++..|+..+..... .++|+++||||+|+... +.+..
T Consensus 76 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~------------~~~piiiv~nK~Dl~~~--~~~~~---- 137 (216)
T PLN03110 76 AITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD------------SNIVIMMAGNKSDLNHL--RSVAE---- 137 (216)
T ss_pred HHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC------------CCCeEEEEEEChhcccc--cCCCH----
Confidence 9999999999999999999999999999999999887642 37999999999999765 55553
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
+.++.++..++ ++|+| +||++|.|++++|+.++..+.+..
T Consensus 138 ~~~~~l~~~~~-------~~~~e---------~SA~~g~~v~~lf~~l~~~i~~~~ 177 (216)
T PLN03110 138 EDGQALAEKEG-------LSFLE---------TSALEATNVEKAFQTILLEIYHII 177 (216)
T ss_pred HHHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHHHh
Confidence 67888887665 57888 999999999999999998887643
No 50
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=1.1e-29 Score=216.10 Aligned_cols=163 Identities=28% Similarity=0.486 Sum_probs=141.5
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+.+||+|+|++|||||||+++|+++.+...+.++.+.++..+.+.++ +..+.+.||||+|++++..+
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~D~~G~~~~~~~ 68 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIE-------------GKRVKLQIWDTAGQERFRTI 68 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEEC-------------CEEEEEEEEECCChHHHHHH
Confidence 45899999999999999999999999988888898888888888775 55688999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
...+++.+|++|+|||++++.+|+.+..|+..+..... .++|+++|+||+|+... +.+. .++
T Consensus 69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~------------~~~p~ivv~nK~Dl~~~--~~~~----~~~ 130 (165)
T cd01864 69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGA------------SNVVLLLIGNKCDLEEQ--REVL----FEE 130 (165)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC------------CCCcEEEEEECcccccc--cccC----HHH
Confidence 99999999999999999999999999999999987532 37899999999999765 3444 377
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+..+++.+++ .+++| +||++|.|++++++.+.+.
T Consensus 131 ~~~~~~~~~~------~~~~e---------~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 131 ACTLAEKNGM------LAVLE---------TSAKESQNVEEAFLLMATE 164 (165)
T ss_pred HHHHHHHcCC------cEEEE---------EECCCCCCHHHHHHHHHHh
Confidence 8888888775 24677 9999999999999988764
No 51
>PTZ00369 Ras-like protein; Provisional
Probab=99.97 E-value=1.1e-29 Score=221.58 Aligned_cols=166 Identities=22% Similarity=0.366 Sum_probs=142.6
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+|+|++|||||||+++|+++.+...+.+|++.++ .+.+.++ +..+.++||||+|+++|..+
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~l 69 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVID-------------EETCLLDILDTAGQEEYSAM 69 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEEC-------------CEEEEEEEEeCCCCccchhh
Confidence 468999999999999999999999999888889888766 4556665 56788999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++.+|++|+|||++++++|+.+..|+..+..... ..++|+++||||+|+... +.+.. ++
T Consensus 70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-----------~~~~piiiv~nK~Dl~~~--~~i~~----~~ 132 (189)
T PTZ00369 70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-----------KDRVPMILVGNKCDLDSE--RQVST----GE 132 (189)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECcccccc--cccCH----HH
Confidence 99999999999999999999999999999999876632 137899999999999754 44553 66
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+..+++.++ ++|+| |||++|.|++++|+.+.+.+.+.
T Consensus 133 ~~~~~~~~~-------~~~~e---------~Sak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 133 GQELAKSFG-------IPFLE---------TSAKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred HHHHHHHhC-------CEEEE---------eeCCCCCCHHHHHHHHHHHHHHH
Confidence 778887766 46888 99999999999999999887765
No 52
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.97 E-value=1.8e-29 Score=214.39 Aligned_cols=163 Identities=24% Similarity=0.479 Sum_probs=141.7
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+.+||+|+|++|||||||+++|+++.+...+.++++.++..+.+..+ +..+.+.+||++|++++..+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~l~D~~g~~~~~~~ 68 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQID-------------GKTIKAQIWDTAGQERYRAI 68 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEEC-------------CEEEEEEEEeCCChHHHHHH
Confidence 45899999999999999999999999988888999998888888775 56788999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++.++++|+|||++++.+|+.+..|+.++..... .++|++|||||+|+... +.+. .++
T Consensus 69 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~pi~vv~nK~Dl~~~--~~~~----~~~ 130 (165)
T cd01868 69 TSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHAD------------SNIVIMLVGNKSDLRHL--RAVP----TEE 130 (165)
T ss_pred HHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC------------CCCeEEEEEECcccccc--ccCC----HHH
Confidence 99999999999999999999999999999999988742 25899999999999765 4444 367
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
...++...+ ++|+| +||++|.|++++++.++..+
T Consensus 131 ~~~~~~~~~-------~~~~~---------~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 131 AKAFAEKNG-------LSFIE---------TSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred HHHHHHHcC-------CEEEE---------EECCCCCCHHHHHHHHHHHh
Confidence 778877655 56888 99999999999999887654
No 53
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.97 E-value=1.8e-29 Score=215.63 Aligned_cols=167 Identities=26% Similarity=0.452 Sum_probs=143.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.++ +..+.+.|||++|++++..
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~l~i~D~~G~~~~~~ 69 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVD-------------GHFVTLQIWDTAGQERFRS 69 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEEC-------------CeEEEEEEEeCCChHHHHH
Confidence 356899999999999999999999999988888899988877777775 6788999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++++|++|+|||++++++|+.+..|+.++....... ...++|++|||||+|+.. +.+. .+
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--------~~~~~piilv~nK~Dl~~---~~~~----~~ 134 (170)
T cd04116 70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVK--------EPESFPFVVLGNKNDIPE---RQVS----TE 134 (170)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccc--------cCCCCcEEEEEECccccc---cccC----HH
Confidence 99999999999999999999999999999999887654211 114689999999999973 4555 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
++++++++++. ++|+| +||++|.|++++|+.+++.
T Consensus 135 ~~~~~~~~~~~------~~~~e---------~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 135 EAQAWCRENGD------YPYFE---------TSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHCCC------CeEEE---------EECCCCCCHHHHHHHHHhh
Confidence 78899988874 36777 9999999999999888764
No 54
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.97 E-value=1.6e-29 Score=225.50 Aligned_cols=169 Identities=21% Similarity=0.351 Sum_probs=139.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|||++|||||||+++|+++.|.. +.+|++.++..+.+ ..+.+.||||+|+++|..++.
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~-----------------~~~~l~iwDt~G~e~~~~l~~ 62 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW-----------------GPYNISIWDTAGREQFHGLGS 62 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe-----------------eEEEEEEEeCCCcccchhhHH
Confidence 589999999999999999999999864 57888877655443 246799999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc---------------
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK--------------- 166 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~--------------- 166 (333)
.+++++|++|+|||++++.||+++..|+..+.+... .++|+||||||+||...
T Consensus 63 ~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~------------~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~ 130 (220)
T cd04126 63 MYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTAN------------EDCLFAVVGNKLDLTEEGALAGQEKDAGDRVS 130 (220)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------CCCcEEEEEECccccccccccccccccccccc
Confidence 999999999999999999999999988888776532 36899999999999751
Q ss_pred --cCCccCcccHHHHHHHHHHHcCCC--------CCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 167 --EGTRGSSGNLVDAARQWVEKQGLL--------PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 167 --~~r~v~~~~~~~~~~~~~~~~~~~--------~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
..+.|+. +++++|+++.+.. ... .++|+| |||++|.||+++|..+++.++....
T Consensus 131 ~~~~r~v~~----~e~~~~a~~~~~~~~~~~~~~~~~-~~~~~E---------~SA~tg~~V~elf~~i~~~~~~~~~ 194 (220)
T cd04126 131 PEDQRQVTL----EDAKAFYKRINKYKMLDEDLSPAA-EKMCFE---------TSAKTGYNVDELFEYLFNLVLPLIL 194 (220)
T ss_pred ccccccCCH----HHHHHHHHHhCccccccccccccc-cceEEE---------eeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1366664 8899999987621 111 257888 9999999999999999988876443
No 55
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.97 E-value=1.9e-29 Score=214.20 Aligned_cols=160 Identities=23% Similarity=0.434 Sum_probs=136.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.+...+.++.+.++....+.++ +..+.+++|||+|+++|..++.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~~~~ 67 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFE-------------GKTILVDFWDTAGQERFQTMHA 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEEC-------------CEEEEEEEEeCCCchhhhhhhH
Confidence 589999999999999999999999988888888877776666665 5778999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++|+|||++++.+|+++..|+..+.... .++|++||+||+|+... + .++..
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-------------~~~p~ivv~nK~Dl~~~----~-----~~~~~ 125 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYR-------------PEIPCIVVANKIDLDPS----V-----TQKKF 125 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-------------CCCcEEEEEECccCchh----H-----HHHHH
Confidence 99999999999999999999999999999997763 36899999999998532 1 24455
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.+++..+ +++++ +||++|.|++++|+.+++.++..
T Consensus 126 ~~~~~~~-------~~~~~---------~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 126 NFAEKHN-------LPLYY---------VSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred HHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHhc
Confidence 6666554 46777 99999999999999998877653
No 56
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.97 E-value=2e-29 Score=213.19 Aligned_cols=160 Identities=24% Similarity=0.394 Sum_probs=139.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.+.. .+..+.+.||||+|+++|..++.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----------~~~~~~~~i~D~~G~~~~~~~~~ 69 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQ-----------SDEDVRLMLWDTAGQEEFDAITK 69 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcC-----------CCCEEEEEEeeCCchHHHHHhHH
Confidence 5899999999999999999999999888899999988777777651 14578899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++++|||++++++|+.+..|+..+.... .++|+++|+||+|+... +.++ .+++.
T Consensus 70 ~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~-------------~~~p~iiv~nK~Dl~~~--~~v~----~~~~~ 130 (162)
T cd04106 70 AYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC-------------GDIPMVLVQTKIDLLDQ--AVIT----NEEAE 130 (162)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEEChhcccc--cCCC----HHHHH
Confidence 99999999999999999999999999999987654 37899999999999765 4455 36788
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
.+++.++ ++++| +||++|.|++++++.+..
T Consensus 131 ~~~~~~~-------~~~~~---------~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 131 ALAKRLQ-------LPLFR---------TSVKDDFNVTELFEYLAE 160 (162)
T ss_pred HHHHHcC-------CeEEE---------EECCCCCCHHHHHHHHHH
Confidence 8888877 46888 999999999998888764
No 57
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.97 E-value=2e-29 Score=215.40 Aligned_cols=160 Identities=23% Similarity=0.377 Sum_probs=137.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+.+.+...+.+|++.++....+..+ +..+.+.+|||+|++++..++.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~~~ 67 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTN-------------RGKIRFNVWDTAGQEKFGGLRD 67 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEEC-------------CEEEEEEEEECCCChhhccccH
Confidence 599999999999999999999998888889999988877666554 5678999999999999999888
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.++..+|++|+|||++++++|+.+..|+.++..... ++|+++||||+|+... .+. ....
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-------------~~piiiv~nK~Dl~~~---~~~-----~~~~ 126 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG-------------NIPIVLCGNKVDIKDR---KVK-----AKQI 126 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-------------CCcEEEEEEchhcccc---cCC-----HHHH
Confidence 999999999999999999999999999999988752 7999999999999732 332 3345
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
++++..+ ++|+| |||++|.|++++|+.|.+.+++
T Consensus 127 ~~~~~~~-------~~~~e---------~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 127 TFHRKKN-------LQYYE---------ISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred HHHHHcC-------CEEEE---------EeCCCCCChHHHHHHHHHHHHh
Confidence 5665543 56888 9999999999999999988764
No 58
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=3.7e-29 Score=218.54 Aligned_cols=165 Identities=24% Similarity=0.439 Sum_probs=142.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFS-RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
+||+|+|++|||||||+++|+++.+.. .+.+|++.++..+.+.++ +..+.+.||||+|++++..++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~~~ 67 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVD-------------GVKVKLQIWDTAGQERFRSVT 67 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEEC-------------CEEEEEEEEeCCCcHHHHHhh
Confidence 589999999999999999999998864 677888888877777765 567899999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++.+|++|+|||++++++|+++..|+..+..... .++|+++||||+|+... +.+.. +++
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~------------~~~piiiv~NK~Dl~~~--~~~~~----~~~ 129 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQ------------EDVVIMLLGNKADMSGE--RVVKR----EDG 129 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC------------CCCcEEEEEEcccchhc--cccCH----HHH
Confidence 9999999999999999999999999999999987742 36899999999999754 44543 677
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
+.+++.++ ++|+| +||++|.|++++|+.+.+.+....
T Consensus 130 ~~l~~~~~-------~~~~e---------~Sa~~~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 130 ERLAKEYG-------VPFME---------TSAKTGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred HHHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHHhc
Confidence 88887776 46888 999999999999999998887653
No 59
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.97 E-value=4e-29 Score=213.59 Aligned_cols=165 Identities=24% Similarity=0.440 Sum_probs=143.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+|||++|||||||+++|++..+...+.++.+.++..+.+.++ +..+.+.|||++|++++..+
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~~ 69 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-------------GKQIKLQIWDTAGQESFRSI 69 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-------------CEEEEEEEEECCCcHHHHHH
Confidence 45899999999999999999999999888888899998888888775 56788999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
...+++.+|++|+|||++++.+|+.+..|+.++..... .++|++|||||+|+... +.++ .++
T Consensus 70 ~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~pvivv~nK~Dl~~~--~~~~----~~~ 131 (168)
T cd01866 70 TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSN------------SNMTIMLIGNKCDLESR--REVS----YEE 131 (168)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC------------CCCcEEEEEECcccccc--cCCC----HHH
Confidence 99999999999999999999999999999999987642 36899999999999854 3454 367
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
++.++...+ ++|+| +||+++.|++++|+.+.+.+.+
T Consensus 132 ~~~~~~~~~-------~~~~e---------~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 132 GEAFAKEHG-------LIFME---------TSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred HHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHh
Confidence 888888776 45788 9999999999999998887653
No 60
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.97 E-value=1.7e-29 Score=214.10 Aligned_cols=162 Identities=25% Similarity=0.375 Sum_probs=136.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
++||+|+|++|||||||+++++++.+...+.+|++ ++....+.++ +..+.+.||||+|+++|..++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVD-------------SSPSVLEILDTAGTEQFASMR 66 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEEC-------------CEEEEEEEEECCCcccccchH
Confidence 47999999999999999999999999888888875 4555666665 567889999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++++|++|+|||++++.+|+++..|+..+..... ..++|+++||||+|+... +.+. .+++
T Consensus 67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piviv~nK~Dl~~~--~~~~----~~~~ 129 (163)
T cd04176 67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-----------YEKVPIILVGNKVDLESE--REVS----SAEG 129 (163)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECccchhc--CccC----HHHH
Confidence 9999999999999999999999999999999877632 137899999999999754 3444 2567
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
..+++.++ ++++| |||++|.|++++|+.+.+.+
T Consensus 130 ~~~~~~~~-------~~~~~---------~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 130 RALAEEWG-------CPFME---------TSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred HHHHHHhC-------CEEEE---------ecCCCCCCHHHHHHHHHHhc
Confidence 77877766 46777 99999999999998887643
No 61
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.97 E-value=2.5e-29 Score=221.34 Aligned_cols=155 Identities=25% Similarity=0.365 Sum_probs=135.5
Q ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccC
Q 019959 27 VGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQ 106 (333)
Q Consensus 27 vG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ 106 (333)
||+.|||||||+++|+++.|...+.+|+|.++..+.+.++ +..+.+.||||+|+++|..++..+|++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~-------------~~~~~l~iwDt~G~e~~~~l~~~~~~~ 67 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-------------RGPIRFNVWDTAGQEKFGGLRDGYYIQ 67 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEEC-------------CEEEEEEEEECCCchhhhhhhHHHhcC
Confidence 6999999999999999999988899999999988888775 567999999999999999999999999
Q ss_pred CcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHH
Q 019959 107 INGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEK 186 (333)
Q Consensus 107 ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~ 186 (333)
+|++|+|||++++.||+.+..|+.++.+.+ .++|++|||||+|+.. +.+. .+..++++.
T Consensus 68 ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-------------~~~piilvgNK~Dl~~---~~v~-----~~~~~~~~~ 126 (200)
T smart00176 68 GQCAIIMFDVTARVTYKNVPNWHRDLVRVC-------------ENIPIVLCGNKVDVKD---RKVK-----AKSITFHRK 126 (200)
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhC-------------CCCCEEEEEECccccc---ccCC-----HHHHHHHHH
Confidence 999999999999999999999999998864 2799999999999964 3444 223467766
Q ss_pred cCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 187 QGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 187 ~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.+ ++|+| |||++|.||+++|+.+.+.+.+
T Consensus 127 ~~-------~~~~e---------~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 127 KN-------LQYYD---------ISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred cC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHh
Confidence 55 56888 9999999999999999988764
No 62
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.9e-29 Score=221.28 Aligned_cols=167 Identities=19% Similarity=0.248 Sum_probs=127.2
Q ss_pred ceEEEEECCCCCCHHHHHH-HHHcC-----CCCCCCCcccce-eEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 21 QVRVLVVGDSGVGKTSLVN-LIVKG-----SSFSRPSQTIGC-TVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~-~l~~~-----~~~~~~~~t~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
.+||+++|+.|||||||+. +++++ .|...+.+|++. +.......+.. ......++..+.+.||||+|+
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~-----~~~~~~~~~~v~l~iwDTaG~ 76 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLE-----RSRDVVDGVSVSLRLWDTFGD 76 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeecc-----ccceeeCCEEEEEEEEeCCCC
Confidence 4799999999999999996 66554 345667888863 33222210000 000002367899999999999
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc------
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK------ 166 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~------ 166 (333)
++ .+...+|+++|++|+|||++++.||+++. .|+.++.... .++|++|||||+||.+.
T Consensus 77 ~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-------------~~~piilvgNK~DL~~~~~~~~~ 141 (195)
T cd01873 77 HD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-------------PRVPVILVGCKLDLRYADLDEVN 141 (195)
T ss_pred hh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-------------CCCCEEEEEEchhccccccchhh
Confidence 76 35567899999999999999999999996 6999987764 26899999999999742
Q ss_pred -----------cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 167 -----------EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 167 -----------~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
..+.|+. ++++++|+++| ++|+| |||++|.||+++|+.+++
T Consensus 142 ~~~~~~~~~~~~~~~V~~----~e~~~~a~~~~-------~~~~E---------~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 142 RARRPLARPIKNADILPP----ETGRAVAKELG-------IPYYE---------TSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred hcccccccccccCCccCH----HHHHHHHHHhC-------CEEEE---------cCCCCCCCHHHHHHHHHH
Confidence 1256664 88999999998 46888 999999999999988875
No 63
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=2.3e-29 Score=219.61 Aligned_cols=163 Identities=23% Similarity=0.316 Sum_probs=136.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
||+|+|++|||||||+++|+++.|...+.+|++..+. +.+.++ +..+.+.||||+|+++|..++..
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~-------------~~~~~l~i~Dt~G~~~~~~l~~~ 67 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVD-------------GLHIELSLWDTAGQEEFDRLRSL 67 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEEC-------------CEEEEEEEEECCCChhccccccc
Confidence 8999999999999999999999998888889877664 344444 56789999999999999999999
Q ss_pred hccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC----------Ccc
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG----------TRG 171 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~----------r~v 171 (333)
+++.+|++|+|||+++++||+.+. .|+..+.... .++|++|||||+||..... +.+
T Consensus 68 ~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~-------------~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v 134 (189)
T cd04134 68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC-------------PGVKLVLVALKCDLREARNERDDLQRYGKHTI 134 (189)
T ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEEChhhccChhhHHHHhhccCCCC
Confidence 999999999999999999999986 6999988763 3789999999999976421 123
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
. .+++.++++..+. ++|+| |||++|.|++++|+.+.+.++.
T Consensus 135 ~----~~~~~~~~~~~~~------~~~~e---------~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 135 S----YEEGLAVAKRINA------LRYLE---------CSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred C----HHHHHHHHHHcCC------CEEEE---------ccCCcCCCHHHHHHHHHHHHhc
Confidence 3 3677888887763 46788 9999999999999999887763
No 64
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=5.7e-29 Score=213.03 Aligned_cols=163 Identities=28% Similarity=0.487 Sum_probs=140.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh-hh
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK-DC 99 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~-~~ 99 (333)
.+||+++|++|||||||+++|+.+.+...+.++++.++..+.+.++ +..+.+.||||+|++++. .+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~~~ 68 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEID-------------GERIKVQLWDTAGQERFRKSM 68 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEEC-------------CeEEEEEEEeCCChHHHHHhh
Confidence 5799999999999999999999999988888999988888888776 567899999999999987 57
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
...+++++|++|+|||++++.+|+.+..|+.++..... ..++|+++|+||+|+... +.+.. ++
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~iiv~nK~Dl~~~--~~~~~----~~ 131 (170)
T cd04115 69 VQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL-----------PNEVPRILVGNKCDLREQ--IQVPT----DL 131 (170)
T ss_pred HHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC-----------CCCCCEEEEEECccchhh--cCCCH----HH
Confidence 78889999999999999999999999999999987642 137999999999999765 55553 67
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeecc---CcCHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKE---ARYDKEAVMKFFRML 229 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~---g~~v~~~~~~l~~~l 229 (333)
+.++++..+ ++|+| |||++ +.|++++|..+++.+
T Consensus 132 ~~~~~~~~~-------~~~~e---------~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 132 AQRFADAHS-------MPLFE---------TSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred HHHHHHHcC-------CcEEE---------EeccCCcCCCCHHHHHHHHHHHh
Confidence 788887765 57888 99999 888888888887654
No 65
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.97 E-value=4.1e-29 Score=211.36 Aligned_cols=160 Identities=25% Similarity=0.481 Sum_probs=140.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.+...+.++.+.++..+.+.++ +..+.++|||++|+++|..++.
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~l~l~D~~G~~~~~~~~~ 67 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVG-------------GKRVKLQIWDTAGQERFRSVTR 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-------------CEEEEEEEEECcchHHHHHhHH
Confidence 599999999999999999999999988888999988888877775 5678999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++.+|++|+|||++++.+|..+..|+.++..... +++|++||+||+|+... +.+. .+++.
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~iivv~nK~D~~~~--~~~~----~~~~~ 129 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALAS------------PNIVVILVGNKSDLADQ--REVT----FLEAS 129 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC------------CCCeEEEEEEchhcchh--ccCC----HHHHH
Confidence 999999999999999999999999999998876642 47899999999999764 4455 37788
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.+++.++ ++|+| +||+++.|++++|+.+++.
T Consensus 130 ~~~~~~~-------~~~~~---------~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 130 RFAQENG-------LLFLE---------TSALTGENVEEAFLKCARS 160 (161)
T ss_pred HHHHHcC-------CEEEE---------EECCCCCCHHHHHHHHHHh
Confidence 8888877 35777 9999999999999988764
No 66
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=2.7e-29 Score=213.14 Aligned_cols=157 Identities=17% Similarity=0.212 Sum_probs=128.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|+.|||||||+++|+.+.|...+.++ +..+ .+.+.++ +..+.+.||||+|++..
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~-------------~~~~~l~i~D~~g~~~~----- 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVD-------------GQSHLLLIRDEGGAPDA----- 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEEC-------------CEEEEEEEEECCCCCch-----
Confidence 58999999999999999999999887766555 3344 4566665 56788999999999753
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++.+|++|+|||++++.||+++..|+.++..... ..++|++|||||+|+.....+.++. ++++
T Consensus 61 ~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-----------~~~~piilvgnK~Dl~~~~~~~v~~----~~~~ 125 (158)
T cd04103 61 QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-----------ISEIPLILVGTQDAISESNPRVIDD----ARAR 125 (158)
T ss_pred hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEeeHHHhhhcCCcccCH----HHHH
Confidence 457889999999999999999999999999987642 1368999999999996544466774 7788
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
++++..+ .++|+| |||++|.||+++|+.+.+.
T Consensus 126 ~~~~~~~------~~~~~e---------~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 126 QLCADMK------RCSYYE---------TCATYGLNVERVFQEAAQK 157 (158)
T ss_pred HHHHHhC------CCcEEE---------EecCCCCCHHHHHHHHHhh
Confidence 8988764 256888 9999999999999888754
No 67
>PLN03108 Rab family protein; Provisional
Probab=99.97 E-value=9.6e-29 Score=219.36 Aligned_cols=168 Identities=26% Similarity=0.449 Sum_probs=147.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+.+||+|+|++|||||||+++|++..+...+.+|++.++....+.++ +..+.+.+|||+|++++..+
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~-------------~~~i~l~l~Dt~G~~~~~~~ 71 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-------------NKPIKLQIWDTAGQESFRSI 71 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEEC-------------CEEEEEEEEeCCCcHHHHHH
Confidence 46899999999999999999999999988888999999888888776 56788999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++.+|++|+|||++++.+|+++..|+..+..... .++|+++|+||+|+... +.++ .++
T Consensus 72 ~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~------------~~~piiiv~nK~Dl~~~--~~~~----~~~ 133 (210)
T PLN03108 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN------------ANMTIMLIGNKCDLAHR--RAVS----TEE 133 (210)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC------------CCCcEEEEEECccCccc--cCCC----HHH
Confidence 99999999999999999999999999999998876532 36899999999999865 4555 377
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++++++.++ ++|+| +||+++.|++++|+++++.++++..
T Consensus 134 ~~~~~~~~~-------~~~~e---------~Sa~~~~~v~e~f~~l~~~~~~~~~ 172 (210)
T PLN03108 134 GEQFAKEHG-------LIFME---------ASAKTAQNVEEAFIKTAAKIYKKIQ 172 (210)
T ss_pred HHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 889998877 46888 9999999999999999998877543
No 68
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.97 E-value=1.1e-28 Score=217.39 Aligned_cols=188 Identities=43% Similarity=0.731 Sum_probs=144.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+++|++|||||||+++|+++.|...+.+|+|+++..+.+.++.. ..++..+.++||||+|+++|..++.
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~--------~~~~~~~~l~IwDtaG~e~~~~l~~ 72 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEG--------TPEEKTFFVELWDVGGSESVKSTRA 72 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCC--------CCCCcEEEEEEEecCCchhHHHHHH
Confidence 59999999999999999999999999999999999998888877521 1235679999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCC-------CCCCCCCCCcEEEEeeCcCCCCccCCccCcc
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLA-------SGGPGGLPVPYVVIGNKADVAAKEGTRGSSG 174 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~-------~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~ 174 (333)
.+|+++|++|+|||++++.||+++..|+.++......+.+.. .......++|+||||||+|+.++ |.++..
T Consensus 73 ~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~--r~~~~~ 150 (202)
T cd04102 73 VFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE--KESSGN 150 (202)
T ss_pred HHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh--cccchH
Confidence 999999999999999999999999999999976532111100 00011247999999999999865 566654
Q ss_pred cHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcC------HHHHHHHHHHHHHHHHhc
Q 019959 175 NLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY------DKEAVMKFFRMLIRRRYF 235 (333)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~------v~~~~~~l~~~l~~~~~~ 235 (333)
........+|++.|+ |.++ .++++... ....+..+|+.+++++++
T Consensus 151 ~~~~~~~~ia~~~~~-------~~i~---------~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (202)
T cd04102 151 LVLTARGFVAEQGNA-------EEIN---------LNCTNGRLLAAGSSDAVKLSRFFDKVIEKRYF 201 (202)
T ss_pred HHhhHhhhHHHhcCC-------ceEE---------EecCCcccccCCCccHHHHHHHHHHHHHhhhc
Confidence 334556678888885 4555 34432221 235668899999988774
No 69
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.97 E-value=7.2e-29 Score=209.03 Aligned_cols=161 Identities=24% Similarity=0.398 Sum_probs=135.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
++||+|+|++|||||||+++|+++.+...+.+|.+..+ .+.+.++ +..+.+.+|||+|++++..++
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~l~ 66 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVID-------------GETCLLDILDTAGQEEYSAMR 66 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEEC-------------CEEEEEEEEECCCCcchHHHH
Confidence 47999999999999999999999999888888887655 4555554 566789999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++.+|++++|||+++..+|+.+..|+..+.+... ..++|++||+||+|+... .+. .+++
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piivv~nK~Dl~~~---~~~----~~~~ 128 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-----------SDDVPMVLVGNKCDLAAR---TVS----SRQG 128 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECcccccc---eec----HHHH
Confidence 9999999999999999999999999999999887632 137899999999999752 333 3667
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.++++.++ ++++| +||++|.|++++|+.+.+.+
T Consensus 129 ~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 129 QDLAKSYG-------IPYIE---------TSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred HHHHHHhC-------CeEEE---------ecCCCCCCHHHHHHHHHHHh
Confidence 78887776 46888 99999999999998887643
No 70
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=8.3e-29 Score=215.01 Aligned_cols=168 Identities=21% Similarity=0.323 Sum_probs=140.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.+...+.+|++.++... +... ++..+.+.||||+|+++|..++.
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~------------~~~~~~l~i~Dt~G~~~~~~~~~ 67 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGP------------NGKIIELALWDTAGQEEYDRLRP 67 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEec------------CCcEEEEEEEECCCchhHHHHHH
Confidence 5899999999999999999999999888888888776443 4332 14678899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc--CCccCcccHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE--GTRGSSGNLVD 178 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~--~r~v~~~~~~~ 178 (333)
.+++++|++|+|||++++.||+++. .|+..+.... .++|+++||||+|+.... .+.+. .+
T Consensus 68 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~piilv~nK~Dl~~~~~~~~~v~----~~ 130 (187)
T cd04132 68 LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC-------------PGTPIMLVGLKTDLRKDKNLDRKVT----PA 130 (187)
T ss_pred HhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEeChhhhhCccccCCcC----HH
Confidence 9999999999999999999999985 5988886653 378999999999997542 12344 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++++++..+++. +|+| |||++|.|++++|+.+++.++....
T Consensus 131 ~~~~~~~~~~~~------~~~e---------~Sa~~~~~v~~~f~~l~~~~~~~~~ 171 (187)
T cd04132 131 QAESVAKKQGAF------AYLE---------CSAKTMENVEEVFDTAIEEALKKEG 171 (187)
T ss_pred HHHHHHHHcCCc------EEEE---------ccCCCCCCHHHHHHHHHHHHHhhhh
Confidence 888999888852 5777 9999999999999999999887654
No 71
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.96 E-value=1e-28 Score=209.47 Aligned_cols=161 Identities=25% Similarity=0.370 Sum_probs=137.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC--CCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG--SSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+||+|+|++|||||||+++|..+ .+...+.+|+|.++..+.+.++. +..+.+.+|||+|++.+..+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~------------~~~~~l~i~Dt~G~~~~~~~ 68 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDT------------DNTVELFIFDSAGQELYSDM 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCC------------CCEEEEEEEECCCHHHHHHH
Confidence 58999999999999999999865 68888999999998888777642 56789999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
...++.++|++|+|||++++.+|+.+..|+..+.... .++|+++|+||+|+... +.+.. ..
T Consensus 69 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-------------~~~p~ilv~nK~Dl~~~--~~~~~----~~ 129 (164)
T cd04101 69 VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS-------------KHMPGVLVGNKMDLADK--AEVTD----AQ 129 (164)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEECcccccc--cCCCH----HH
Confidence 9999999999999999999999999999999987763 26899999999999755 34442 45
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
++.++..++ ++|+| |||++|.|++++++.+++.+
T Consensus 130 ~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 130 AQAFAQANQ-------LKFFK---------TSALRGVGYEEPFESLARAF 163 (164)
T ss_pred HHHHHHHcC-------CeEEE---------EeCCCCCChHHHHHHHHHHh
Confidence 566666655 46778 99999999999998888764
No 72
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.96 E-value=8.7e-29 Score=209.86 Aligned_cols=162 Identities=24% Similarity=0.384 Sum_probs=135.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|++..+...+.+|++..+ .+.+.++ +..+.+.+|||+|++++..++.
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~g~~~~~~~~~ 66 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEID-------------GEVCLLDILDTAGQEEFSAMRD 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEEC-------------CEEEEEEEEECCCcccchHHHH
Confidence 5999999999999999999999988888888776433 4555554 5678999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++.+|++|+|||++++++|+.+..|+..+..... ..++|+++||||+|+... +.+. .+.+.
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~pii~v~nK~Dl~~~--~~~~----~~~~~ 129 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKD-----------RDDVPIVLVGNKCDLESE--RVVS----TEEGK 129 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECcccccc--ceEc----HHHHH
Confidence 999999999999999999999999999988876532 136899999999999764 4444 36677
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
++++.++ ++|+| +||++|.|++++|+.+++.+.
T Consensus 130 ~~~~~~~-------~~~~~---------~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 130 ELARQWG-------CPFLE---------TSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred HHHHHcC-------CEEEE---------eecCCCCCHHHHHHHHHHHHh
Confidence 8887766 46888 999999999999999887654
No 73
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.96 E-value=9.3e-29 Score=210.59 Aligned_cols=161 Identities=23% Similarity=0.267 Sum_probs=133.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.|...+.+|++..+ .+.+..+ ...+.+.+|||+|+++|..++.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~~~ 67 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCS-------------KNICTLQITDTTGSHQFPAMQR 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEEC-------------CEEEEEEEEECCCCCcchHHHH
Confidence 7999999999999999999999999888888877555 4444443 4578899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.++..+|++|+|||++++.+|+++..|+..+....... ..++|++|||||+|+... +.+.. +++.
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~---------~~~~piilv~nK~Dl~~~--~~v~~----~~~~ 132 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNN---------IEKIPIMLVGNKCDESHK--REVSS----NEGA 132 (165)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCC---------CCCCCEEEEEECcccccc--CeecH----HHHH
Confidence 99999999999999999999999999998887653211 147999999999999764 45553 6677
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
.++...+ ++|+| |||++|.|++++|+.+++
T Consensus 133 ~~~~~~~-------~~~~e---------~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 133 ACATEWN-------CAFME---------TSAKTNHNVQELFQELLN 162 (165)
T ss_pred HHHHHhC-------CcEEE---------eecCCCCCHHHHHHHHHh
Confidence 7777665 46788 999999999999988864
No 74
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.96 E-value=1.6e-28 Score=214.49 Aligned_cols=166 Identities=23% Similarity=0.359 Sum_probs=141.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFS-RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
+||+|+|++|||||||+++|+++.+.. .+.+|++.++..+.+.++ +..+.+.||||+|++++..++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~D~~G~~~~~~~~ 67 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVG-------------ERVVTLGIWDTAGSERYEAMS 67 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEEC-------------CEEEEEEEEECCCchhhhhhh
Confidence 589999999999999999999998874 688899988888888776 677899999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc--CCccCcccHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE--GTRGSSGNLVD 178 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~--~r~v~~~~~~~ 178 (333)
..++.++|++|+|||++++.+|+++..|+..+.... .++|+++|+||+|+.... .+.+. .+
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-------------~~~piilv~nK~Dl~~~~~~~~~v~----~~ 130 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE-------------EHCKIYLCGTKSDLIEQDRSLRQVD----FH 130 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC-------------CCCCEEEEEEcccccccccccCccC----HH
Confidence 999999999999999999999999999999987753 268999999999986432 13343 25
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++.+++..++ ++++| +||++|.|++++++.+.+.+++..
T Consensus 131 ~~~~~~~~~~-------~~~~~---------~Sa~~~~gv~~l~~~i~~~~~~~~ 169 (193)
T cd04118 131 DVQDFADEIK-------AQHFE---------TSSKTGQNVDELFQKVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHHhc
Confidence 6777777765 45777 999999999999999998887654
No 75
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.96 E-value=1.5e-28 Score=208.05 Aligned_cols=162 Identities=21% Similarity=0.351 Sum_probs=135.8
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+++|++|||||||+++|+++.+...+.+|.+..+ .+.+.++ +..+.+.+|||+|++++..++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~~~ 67 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEID-------------GQWAILDILDTAGQEEFSAMR 67 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEEC-------------CEEEEEEEEECCCCcchhHHH
Confidence 47999999999999999999999988888888877544 4445554 567889999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++.+|++|+|||+++..+|+.+..|+..+..... ..++|++||+||+|+... +.+. .+++
T Consensus 68 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piiiv~NK~Dl~~~--~~~~----~~~~ 130 (164)
T cd04145 68 EQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-----------RDEFPMILVGNKADLEHQ--RKVS----REEG 130 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----------CCCCCEEEEeeCcccccc--ceec----HHHH
Confidence 9999999999999999999999999999999876532 136899999999999764 3444 3667
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.++++.++ ++++| +||++|.|++++|+.+++.+
T Consensus 131 ~~~~~~~~-------~~~~~---------~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 131 QELARKLK-------IPYIE---------TSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred HHHHHHcC-------CcEEE---------eeCCCCCCHHHHHHHHHHhh
Confidence 88888766 46778 99999999999998887653
No 76
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.96 E-value=2.2e-28 Score=206.91 Aligned_cols=163 Identities=28% Similarity=0.522 Sum_probs=141.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|++..+...+.++++.++....+.++ +..+.+.+||++|++++..+..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~D~~G~~~~~~~~~ 67 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVD-------------GKRVKLQIWDTAGQERFRSITS 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-------------CEEEEEEEEECCChHHHHHHHH
Confidence 599999999999999999999999888888898988888878775 5678899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++.+|++|+|||++++.+++.+..|+..+..+.. .++|+++|+||+|+... +.+. .+.++
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~------------~~~pivvv~nK~D~~~~--~~~~----~~~~~ 129 (164)
T smart00175 68 SYYRGAVGALLVYDITNRESFENLKNWLKELREYAD------------PNVVIMLVGNKSDLEDQ--RQVS----REEAE 129 (164)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC------------CCCeEEEEEEchhcccc--cCCC----HHHHH
Confidence 999999999999999999999999999999987742 37999999999998764 3344 36788
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
++++..+ ++++| +||++|.|++++++.+.+.+.+
T Consensus 130 ~~~~~~~-------~~~~e---------~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 130 AFAEEHG-------LPFFE---------TSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred HHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHhh
Confidence 8888776 45777 9999999999999999887754
No 77
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.96 E-value=8.3e-29 Score=212.16 Aligned_cols=161 Identities=19% Similarity=0.302 Sum_probs=135.4
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhh
Q 019959 24 VLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSIL 103 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~ 103 (333)
|+|+|++|||||||+++|+++.+...+.++++..+ ...+.++ +..+.+.+|||+|+++|..++..+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~~~~~~ 66 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVD-------------GKPVELGLWDTAGQEDYDRLRPLS 66 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEEC-------------CEEEEEEEEECCCCcccchhchhh
Confidence 68999999999999999999999888888876554 3445554 567889999999999999999999
Q ss_pred ccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC----------CccC
Q 019959 104 YSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG----------TRGS 172 (333)
Q Consensus 104 ~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~----------r~v~ 172 (333)
++++|++|+|||+++++||+.+. .|+..+.... .++|++|||||+|+..... +.++
T Consensus 67 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-------------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 133 (174)
T smart00174 67 YPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC-------------PNTPIILVGTKLDLREDKSTLRELSKQKQEPVT 133 (174)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-------------CCCCEEEEecChhhhhChhhhhhhhcccCCCcc
Confidence 99999999999999999999985 6999988764 3789999999999975321 2244
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.+++.++++.+++. +|+| |||++|.|++++|+.+.+.++
T Consensus 134 ----~~~~~~~~~~~~~~------~~~e---------~Sa~~~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 134 ----YEQGEALAKRIGAV------KYLE---------CSALTQEGVREVFEEAIRAAL 172 (174)
T ss_pred ----HHHHHHHHHHcCCc------EEEE---------ecCCCCCCHHHHHHHHHHHhc
Confidence 37788999998852 5777 999999999999999988764
No 78
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.96 E-value=1.1e-28 Score=216.95 Aligned_cols=168 Identities=21% Similarity=0.191 Sum_probs=133.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh----
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK---- 97 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~---- 97 (333)
+||+|+|++|||||||+++|+++.|...+.+|++.++....+.++ +..+.+.||||+|.+.+.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~-------------~~~~~l~i~Dt~G~~~~~~~~~ 67 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLS-------------GRVYDLHILDVPNMQRYPGTAG 67 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEEC-------------CEEEEEEEEeCCCcccCCccch
Confidence 589999999999999999999999988888888877766666665 567899999999965432
Q ss_pred ----hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 98 ----DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 98 ----~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
.....+++.+|++|+|||+++++||+.+..|+..+...... ...++|++|||||+|+... +.+..
T Consensus 68 ~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~---------~~~~~piiivgNK~Dl~~~--~~~~~ 136 (198)
T cd04142 68 QEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPA---------GNKEPPIVVVGNKRDQQRH--RFAPR 136 (198)
T ss_pred hHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhccc---------CCCCCCEEEEEECcccccc--ccccH
Confidence 12334578999999999999999999999999988776310 0147999999999999764 44443
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++++.++++.. +++|+| |||++|.|++++|+.+++.+..+
T Consensus 137 ----~~~~~~~~~~~------~~~~~e---------~Sak~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 137 ----HVLSVLVRKSW------KCGYLE---------CSAKYNWHILLLFKELLISATTR 176 (198)
T ss_pred ----HHHHHHHHHhc------CCcEEE---------ecCCCCCCHHHHHHHHHHHhhcc
Confidence 55666665432 267888 99999999999998888776643
No 79
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=1.5e-28 Score=210.66 Aligned_cols=163 Identities=17% Similarity=0.144 Sum_probs=137.1
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
+.+||+|+|++|||||||+++|+++.|. ..+.+|++.++..+.+.++ +..+.+.+||++|++.+..
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~-------------~~~~~l~~~d~~g~~~~~~ 69 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVY-------------GQEKYLILREVGEDEVAIL 69 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEEC-------------CeEEEEEEEecCCcccccc
Confidence 4689999999999999999999999998 8889999988877777775 5678899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..++.++|++|+|||++++.+|+.+..|+..+... .++|+++|+||+|+.+. +.+.. +
T Consensus 70 ~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~--------------~~~p~iiv~NK~Dl~~~--~~~~~----~ 129 (169)
T cd01892 70 LNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML--------------GEIPCLFVAAKADLDEQ--QQRYE----V 129 (169)
T ss_pred cchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC--------------CCCeEEEEEEccccccc--ccccc----c
Confidence 8888999999999999999999999999999876332 26899999999999754 33322 4
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+..++++.+++. ++++ +||++|.|++++|+.+.+.+.
T Consensus 130 ~~~~~~~~~~~~------~~~~---------~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 130 QPDEFCRKLGLP------PPLH---------FSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred CHHHHHHHcCCC------CCEE---------EEeccCccHHHHHHHHHHHhh
Confidence 466778887753 2466 999999999999988887764
No 80
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.96 E-value=2.6e-28 Score=209.54 Aligned_cols=160 Identities=20% Similarity=0.281 Sum_probs=134.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+++|++|||||||+++|+++.|...+.+|. .+.....+.++ +..+.+.+|||+|+++|..++.
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~~~~ 66 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVD-------------GKPVRLQLCDTAGQDEFDKLRP 66 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEEC-------------CEEEEEEEEECCCChhhccccc
Confidence 589999999999999999999999988888886 44445556654 5678899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc----------CCc
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE----------GTR 170 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~----------~r~ 170 (333)
.+++++|++|+|||++++.+|+++. .|+..+.... .++|+++||||+|+.... .+.
T Consensus 67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-------------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 133 (173)
T cd04130 67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-------------PKAPIILVGTQADLRTDVNVLIQLARYGEKP 133 (173)
T ss_pred cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-------------CCCCEEEEeeChhhccChhHHHHHhhcCCCC
Confidence 9999999999999999999999984 7998887643 268999999999997532 245
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
|. .++++.+++..++ .+|+| |||++|.|++++|+.++.
T Consensus 134 v~----~~~~~~~a~~~~~------~~~~e---------~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 134 VS----QSRAKALAEKIGA------CEYIE---------CSALTQKNLKEVFDTAIL 171 (173)
T ss_pred cC----HHHHHHHHHHhCC------CeEEE---------EeCCCCCCHHHHHHHHHh
Confidence 55 3788999998885 35777 999999999999987753
No 81
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.96 E-value=7.4e-28 Score=203.78 Aligned_cols=162 Identities=27% Similarity=0.469 Sum_probs=140.8
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
++||+|+|++|||||||+++|+++.+...+.++.+.++..+.+.++ +..+.+.+||++|++++...+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~-------------~~~~~~~i~D~~G~~~~~~~~ 67 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLD-------------DTTVKFEIWDTAGQERYRSLA 67 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-------------CEEEEEEEEeCCchHHHHHHH
Confidence 4799999999999999999999999888788888888888888776 567899999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++++|++|+|||++++++|+.+..|+..+..... ..+|+++|+||+|+... +.+. .+++
T Consensus 68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~iivv~nK~D~~~~--~~~~----~~~~ 129 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS------------PNIIIALVGNKADLESK--RQVS----TEEA 129 (163)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC------------CCCeEEEEEECcccccc--CcCC----HHHH
Confidence 9999999999999999999999999999999987742 37899999999998854 3444 3667
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
..++..++ ++++| +||++|.|++++++.+++.+
T Consensus 130 ~~~~~~~~-------~~~~~---------~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 130 QEYADENG-------LLFFE---------TSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred HHHHHHcC-------CEEEE---------EECCCCCCHHHHHHHHHHHh
Confidence 77888776 35777 99999999999999988764
No 82
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.96 E-value=5.6e-28 Score=204.11 Aligned_cols=160 Identities=23% Similarity=0.349 Sum_probs=138.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+++|++|||||||+++|++..+...+.++.+.++..+.+.++ +..+.+.+|||+|++++..+..
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~l~~~D~~G~~~~~~~~~ 67 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLE-------------DKTVRLQLWDTAGQERFRSLIP 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEEC-------------CEEEEEEEEECCCcHHHHHHHH
Confidence 489999999999999999999999988888999999988888775 5668899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++|+|||++++++|+.+..|+..+..... .++|+++|+||+|+... +.+. .++..
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~iilv~nK~D~~~~--~~~~----~~~~~ 129 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG------------NDVIIVLVGNKTDLSDK--RQVS----TEEGE 129 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC------------CCCEEEEEEEChhcccc--CccC----HHHHH
Confidence 999999999999999999999999999999876531 26899999999999643 3444 36677
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.+++..+ +++++ +||+++.|++++++.+.+.
T Consensus 130 ~~~~~~~-------~~~~~---------~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 130 KKAKELN-------AMFIE---------TSAKAGHNVKELFRKIASA 160 (161)
T ss_pred HHHHHhC-------CEEEE---------EeCCCCCCHHHHHHHHHHh
Confidence 7777766 45777 9999999999999988764
No 83
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.96 E-value=5e-28 Score=219.71 Aligned_cols=170 Identities=22% Similarity=0.281 Sum_probs=135.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.|...+.+|++ ++..+.+.++ +..+.+.||||+|++.|..++.
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~-------------~~~~~l~I~Dt~G~~~~~~~~~ 66 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIR-------------GEVYQLDILDTSGNHPFPAMRR 66 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEEC-------------CEEEEEEEEECCCChhhhHHHH
Confidence 5899999999999999999999999888888887 5666667665 5778999999999999999988
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.++..+|++|+|||+++++||+++..|+.++...... +........++|+||||||+|+... +.+.. +++.
T Consensus 67 ~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~---~~~~~~~~~~~piIivgNK~Dl~~~--~~v~~----~ei~ 137 (247)
T cd04143 67 LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSC---LKNKTKENVKIPMVICGNKADRDFP--REVQR----DEVE 137 (247)
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcc---cccccccCCCCcEEEEEECccchhc--cccCH----HHHH
Confidence 8899999999999999999999999999998764210 0000011247999999999999764 44553 5666
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+++.... .++|+| +||++|.|++++|+.+++.+
T Consensus 138 ~~~~~~~------~~~~~e---------vSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 138 QLVGGDE------NCAYFE---------VSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred HHHHhcC------CCEEEE---------EeCCCCCCHHHHHHHHHHHh
Confidence 6654332 256788 99999999999999888754
No 84
>PLN03118 Rab family protein; Provisional
Probab=99.96 E-value=1.9e-27 Score=210.99 Aligned_cols=172 Identities=26% Similarity=0.439 Sum_probs=142.0
Q ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 14 ~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
..++....+||+|||++|||||||+++|++..+ ..+.++.+.++....+.++ +..+.+.||||+|+
T Consensus 7 ~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~-------------~~~~~l~l~Dt~G~ 72 (211)
T PLN03118 7 QSSGYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVG-------------GKRLKLTIWDTAGQ 72 (211)
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEEC-------------CEEEEEEEEECCCc
Confidence 344556679999999999999999999998877 4567888888877777765 56788999999999
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcccHHHHHH-HHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQK-WAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~-~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
++|..++..+++.+|++|+|||++++++|+++.. |...+..... ..+.|++|||||+|+... +.+.
T Consensus 73 ~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~-----------~~~~~~ilv~NK~Dl~~~--~~i~ 139 (211)
T PLN03118 73 ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYST-----------NQDCVKMLVGNKVDRESE--RDVS 139 (211)
T ss_pred hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECcccccc--CccC
Confidence 9999999999999999999999999999999965 7666654421 136799999999999765 3444
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.+++..++..++ ++|+| |||++|.|++++|+.+.+.+...
T Consensus 140 ----~~~~~~~~~~~~-------~~~~e---------~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 140 ----REEGMALAKEHG-------CLFLE---------CSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred ----HHHHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHhh
Confidence 366777877776 46788 99999999999999999887654
No 85
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.96 E-value=1.4e-27 Score=203.98 Aligned_cols=164 Identities=22% Similarity=0.356 Sum_probs=138.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
++||+++|++|||||||+++|.++.+...+.+|++..+ .+.+.++ +..+.+++|||+|+++|..++
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~~~ 66 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEID-------------GRQCDLEILDTAGTEQFTAMR 66 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEEC-------------CEEEEEEEEeCCCcccchhhh
Confidence 47999999999999999999999999888888887554 5666665 567889999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..++..++++|+|||++++++|+.+..|...+..... ..++|+++|+||+|+... +.+. .+++
T Consensus 67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piiiv~nK~D~~~~--~~~~----~~~~ 129 (168)
T cd04177 67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD-----------SDNVPMVLVGNKADLEDD--RQVS----REDG 129 (168)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-----------CCCCCEEEEEEChhcccc--CccC----HHHH
Confidence 9999999999999999999999999999998876421 137999999999999765 4444 3667
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
..+++..+. ++|+| +||++|.|++++|+++...++
T Consensus 130 ~~~~~~~~~------~~~~~---------~SA~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 130 VSLSQQWGN------VPFYE---------TSARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred HHHHHHcCC------ceEEE---------eeCCCCCCHHHHHHHHHHHHh
Confidence 777777663 57888 999999999999999987664
No 86
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.96 E-value=3.4e-27 Score=201.31 Aligned_cols=169 Identities=31% Similarity=0.509 Sum_probs=142.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|++..+...+.++++.++..+.+.++ +..+.+.+||++|++.+..++.
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~~~D~~g~~~~~~~~~ 67 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVD-------------DKLVTLQIWDTAGQERFQSLGV 67 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEEC-------------CEEEEEEEEeCCChHHHHhHHH
Confidence 589999999999999999999999888888888988888888776 5678899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++|+|||++++.+|+++..|...+....... ...++|+++|+||+|+... +.+. .++.+
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~p~ilv~nK~Dl~~~--~~~~----~~~~~ 133 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPS--------DPENFPFVVLGNKIDLEEK--RQVS----TKKAQ 133 (172)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCcc--------CCCCceEEEEEECcccccc--cccC----HHHHH
Confidence 99999999999999999999999999998876654211 1136899999999999853 3333 26677
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.+++..+. +++++ +||++|.|++++++.+.+.+++.
T Consensus 134 ~~~~~~~~------~~~~~---------~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 134 QWCQSNGN------IPYFE---------TSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred HHHHHcCC------ceEEE---------EECCCCCCHHHHHHHHHHHHHhc
Confidence 78877763 46777 99999999999999999887765
No 87
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.96 E-value=1.1e-27 Score=205.19 Aligned_cols=162 Identities=19% Similarity=0.328 Sum_probs=134.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.+...+.++++..+ ...+.++ +..+.+.+|||+|++.|..++.
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~~~~ 66 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVG-------------GKQYLLGLYDTAGQEDYDRLRP 66 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEEC-------------CEEEEEEEEeCCCccccccccc
Confidence 5999999999999999999999999888888865433 3445554 5678899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC----------Cc
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG----------TR 170 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~----------r~ 170 (333)
.++..+|++|+|||++++.+|+.+. .|+..+.... .++|++|||||+|+.+... +.
T Consensus 67 ~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~-------------~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~ 133 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-------------PNVPYLLVGTQIDLRDDPKTLARLNDMKEKP 133 (174)
T ss_pred ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-------------CCCCEEEEeEchhhhcChhhHHHHhhccCCC
Confidence 9999999999999999999999985 6888887652 3799999999999865421 24
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
++ .+++..+++.++. .+|+| |||++|.|++++|+.+++.+
T Consensus 134 v~----~~~~~~~~~~~~~------~~~~e---------~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 134 VT----VEQGQKLAKEIGA------HCYVE---------CSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred CC----HHHHHHHHHHcCC------CEEEE---------ecCCcCCCHHHHHHHHHHHh
Confidence 44 3778899988885 35777 99999999999999888765
No 88
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.96 E-value=2.5e-27 Score=200.26 Aligned_cols=160 Identities=28% Similarity=0.466 Sum_probs=138.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|++..+...+.++.+.++....+.++ +..+.+.+||++|++.+..+..
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~D~~g~~~~~~~~~ 67 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVD-------------GKKVKLAIWDTAGQERFRTLTS 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEEC-------------CEEEEEEEEECCCchhhhhhhH
Confidence 599999999999999999999998887788899988887777765 5678899999999999999989
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++.+|++|+|||++++.+|+.+..|+..+..+.. ..++|+++||||+|+... .+. .++..
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~~~~iv~nK~D~~~~---~~~----~~~~~ 129 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-----------NNDIVKMLVGNKIDKENR---EVT----REEGL 129 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-----------CCCCcEEEEEECCccccc---ccC----HHHHH
Confidence 999999999999999999999999999999987743 247899999999999832 333 36677
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
++++..+ ++++| +||++|.|++++++.+++.
T Consensus 130 ~~~~~~~-------~~~~~---------~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 130 KFARKHN-------MLFIE---------TSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred HHHHHcC-------CEEEE---------EecCCCCCHHHHHHHHHHh
Confidence 8887765 56888 9999999999999888764
No 89
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=8.4e-28 Score=210.47 Aligned_cols=166 Identities=21% Similarity=0.317 Sum_probs=149.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+++|.+|||||+|+.+|.++.|...|.+|++ +.+.+.+.++ +..+.+.|+||+|+++|..+
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~-------------~~~~~l~ilDt~g~~~~~~~ 67 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVD-------------GEVCMLEILDTAGQEEFSAM 67 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEEC-------------CEEEEEEEEcCCCcccChHH
Confidence 458999999999999999999999999999999998 6667888776 68899999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
...+++.+|++++||+++++.||+.+..++..|.+... ...+|+++||||+|+... |.|+. ++
T Consensus 68 ~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~-----------~~~~PivlVGNK~Dl~~~--R~V~~----ee 130 (196)
T KOG0395|consen 68 RDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKG-----------RDDVPIILVGNKCDLERE--RQVSE----EE 130 (196)
T ss_pred HHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-----------cCCCCEEEEEEcccchhc--cccCH----HH
Confidence 99999999999999999999999999999999955422 346999999999999987 78885 88
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++.++..++ |+|+| +||+.+.|++++|..+++.+-..
T Consensus 131 g~~la~~~~-------~~f~E---------~Sak~~~~v~~~F~~L~r~~~~~ 167 (196)
T KOG0395|consen 131 GKALARSWG-------CAFIE---------TSAKLNYNVDEVFYELVREIRLP 167 (196)
T ss_pred HHHHHHhcC-------CcEEE---------eeccCCcCHHHHHHHHHHHHHhh
Confidence 999988887 67888 99999999999999999987663
No 90
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.95 E-value=1e-27 Score=203.93 Aligned_cols=162 Identities=18% Similarity=0.265 Sum_probs=131.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh-hhhhHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER-YKDCRS 101 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~-~~~~~~ 101 (333)
||+|+|++|||||||+++|+++.+...+.++.+..+ .+.+.++ +..+.++||||+|+++ +.....
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~D~~g~~~~~~~~~~ 66 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTID-------------GEQVSLEILDTAGQQQADTEQLE 66 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEEC-------------CEEEEEEEEECCCCcccccchHH
Confidence 699999999999999999999888777777765444 4445554 5678899999999885 344566
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++.+|++|+|||++++.||+.+..|+..+..... ...++|+++||||+|+... +.+.. +++.
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----------~~~~~piilv~nK~Dl~~~--~~v~~----~~~~ 130 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKK----------RDREIPVILVGNKADLLHY--RQVST----EEGE 130 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhc----------CCCCCCEEEEEECCchHHh--CccCH----HHHH
Confidence 788999999999999999999999999988877531 0137999999999999754 45553 7788
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCc-CHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR-YDKEAVMKFFRMLI 230 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~-~v~~~~~~l~~~l~ 230 (333)
++++.++ ++|+| +||++|. |++++|+.+++.+.
T Consensus 131 ~~~~~~~-------~~~~e---------~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 131 KLASELG-------CLFFE---------VSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred HHHHHcC-------CEEEE---------eCCCCCchhHHHHHHHHHHHHh
Confidence 8888877 46888 9999995 89999999887653
No 91
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.95 E-value=3.1e-27 Score=211.35 Aligned_cols=163 Identities=17% Similarity=0.167 Sum_probs=134.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
+||+|+|++|||||||+++|+++.+. ..+.++.+.++..+.+.++ +..+.+.||||+|++. ...
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~-------------~~~~~l~i~Dt~G~~~--~~~ 65 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVD-------------GEESTLVVIDHWEQEM--WTE 65 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEEC-------------CEEEEEEEEeCCCcch--HHH
Confidence 58999999999999999999988886 6777777767777888775 5678899999999982 334
Q ss_pred Hhhcc-CCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 101 SILYS-QINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 101 ~~~~~-~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
..++. ++|++|+|||++++.+|+.+..|+.++..... ..++|+|+|+||+|+... +.+.. ++
T Consensus 66 ~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~-----------~~~~piilV~NK~Dl~~~--~~v~~----~~ 128 (221)
T cd04148 66 DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQ-----------LEDRPIILVGNKSDLARS--REVSV----QE 128 (221)
T ss_pred hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEEChhcccc--ceecH----HH
Confidence 45566 99999999999999999999999999877632 137999999999999765 55653 66
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+.+++..++ ++|+| |||++|.|++++|+.+++.+...
T Consensus 129 ~~~~a~~~~-------~~~~e---------~SA~~~~gv~~l~~~l~~~~~~~ 165 (221)
T cd04148 129 GRACAVVFD-------CKFIE---------TSAGLQHNVDELLEGIVRQIRLR 165 (221)
T ss_pred HHHHHHHcC-------CeEEE---------ecCCCCCCHHHHHHHHHHHHHhh
Confidence 788887776 46778 99999999999999998877543
No 92
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.95 E-value=5.4e-27 Score=197.57 Aligned_cols=161 Identities=25% Similarity=0.419 Sum_probs=136.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+. +..+.+.+||++|++.+..++.
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~g~~~~~~~~~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIG-------------GKRIDLAIWDTAGQERYHALGP 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEEC-------------CEEEEEEEEECCchHHHHHhhH
Confidence 599999999999999999999998877777777777777777664 4567899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.++..+|++|+|||+++.++++.+..|+.++..... .++|+++|+||+|+... +.+.. ++..
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piiiv~nK~D~~~~--~~~~~----~~~~ 129 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG------------NNISLVIVGNKIDLERQ--RVVSK----SEAE 129 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC------------CCCeEEEEEECcccccc--cCCCH----HHHH
Confidence 999999999999999999999999999999987642 26899999999999854 34442 5666
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
++++..+ +++++ +||+++.|++++++.+.+.+
T Consensus 130 ~~~~~~~-------~~~~~---------~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 130 EYAKSVG-------AKHFE---------TSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred HHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHh
Confidence 7777666 45777 99999999999999988765
No 93
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=4.1e-27 Score=204.14 Aligned_cols=164 Identities=20% Similarity=0.307 Sum_probs=128.5
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+++|+.|||||||+++|..+.+. .+.+|+|.++. .+.+ ..+.+.|||++|++++..+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~---------------~~~~~~i~D~~Gq~~~~~~ 77 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY---------------KNISFTVWDVGGQDKIRPL 77 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE---------------CCEEEEEEECCCCHHHHHH
Confidence 4479999999999999999999988775 46788887653 3333 3578999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++++|++|+|||+++++++..+..|+..+..... ..++|++||+||+|+.+.. .
T Consensus 78 ~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~-----------~~~~piilv~NK~Dl~~~~-----------~ 135 (181)
T PLN00223 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE-----------LRDAVLLVFANKQDLPNAM-----------N 135 (181)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHh-----------hCCCCEEEEEECCCCCCCC-----------C
Confidence 99999999999999999999999998888777654311 1368999999999997541 1
Q ss_pred HHHHHHHcCCCCCCc-CCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSE-ELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~-~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+.++.+.+++..... .+.+++ |||++|.|++++|+.|.+.+.++
T Consensus 136 ~~~~~~~l~l~~~~~~~~~~~~---------~Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 136 AAEITDKLGLHSLRQRHWYIQS---------TCATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHhCccccCCCceEEEe---------ccCCCCCCHHHHHHHHHHHHhhc
Confidence 345566666542111 123446 99999999999999998887654
No 94
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.95 E-value=5e-27 Score=201.27 Aligned_cols=162 Identities=22% Similarity=0.339 Sum_probs=133.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
.||+|+|++|||||||+++|+++.+...+.+|++..+. ..+.++ +..+.+.+|||+|+++|..++.
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~~~ 67 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVD-------------GKQVELALWDTAGQEDYDRLRP 67 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEEC-------------CEEEEEEEEeCCCchhhhhccc
Confidence 59999999999999999999999998888888876653 345554 5678899999999999998888
Q ss_pred hhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC----------Cc
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG----------TR 170 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~----------r~ 170 (333)
.++.++|++++|||++++++|+.+. .|+..+.... .++|+++|+||+|+..... +.
T Consensus 68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~-------------~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~ 134 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-------------PNVPIILVGNKKDLRNDEHTRRELAKMKQEP 134 (175)
T ss_pred cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-------------CCCCEEEEeeChhcccChhhhhhhhhccCCC
Confidence 8899999999999999999999985 6888887653 3789999999999865321 22
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+. .++++++++..+. .+|+| |||++|.|++++|+.+.+.+
T Consensus 135 v~----~~~~~~~~~~~~~------~~~~~---------~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 135 VK----PEEGRDMANKIGA------FGYME---------CSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred cc----HHHHHHHHHHcCC------cEEEE---------eccccCcCHHHHHHHHHHHh
Confidence 32 3678888887764 35777 99999999999999887654
No 95
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.95 E-value=3.5e-28 Score=209.47 Aligned_cols=168 Identities=22% Similarity=0.340 Sum_probs=144.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+|++|||+.++|||+|+..|..+.|...+.||+...+ ...+.++ +++.+.+.+|||+||++|..+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~------------dg~~v~L~LwDTAGqedYDrl 69 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVD------------DGKPVELGLWDTAGQEDYDRL 69 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEec------------CCCEEEEeeeecCCCcccccc
Confidence 468999999999999999999999999999999987444 4445552 378999999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC----------
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG---------- 168 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~---------- 168 (333)
+...|.++|+||+||++.++.||+++ .+|+.++..++. ++|+||||+|.||.++..
T Consensus 70 RplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp-------------~vpiiLVGtk~DLr~d~~~~~~l~~~~~ 136 (198)
T KOG0393|consen 70 RPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCP-------------NVPIILVGTKADLRDDPSTLEKLQRQGL 136 (198)
T ss_pred cccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCC-------------CCCEEEEeehHHhhhCHHHHHHHHhccC
Confidence 98999999999999999999999997 689999999974 899999999999985321
Q ss_pred CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 169 TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 169 r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
..|+ .++++.+|++.|+. .|+| |||++..|++++|+..++.++..
T Consensus 137 ~~Vt----~~~g~~lA~~iga~------~y~E---------cSa~tq~~v~~vF~~a~~~~l~~ 181 (198)
T KOG0393|consen 137 EPVT----YEQGLELAKEIGAV------KYLE---------CSALTQKGVKEVFDEAIRAALRP 181 (198)
T ss_pred Cccc----HHHHHHHHHHhCcc------eeee---------ehhhhhCCcHHHHHHHHHHHhcc
Confidence 1344 48899999999974 4666 99999999888888887776653
No 96
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=1.6e-26 Score=196.85 Aligned_cols=163 Identities=25% Similarity=0.418 Sum_probs=137.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+++|++|||||||+++|+++.+...+.++++.++..+.+.+. +..+.+.+||++|++.+...
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~~~D~~g~~~~~~~ 72 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIK-------------GEKIKLQIWDTAGQERFRSI 72 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEEC-------------CEEEEEEEEECCCcHHHHHH
Confidence 45899999999999999999999888877788888888888888775 56688999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..++..+|++|+|||+++..+|+.+..|+.++..... .++|+++|+||+|+... +.+.. +.
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~------------~~~~~i~v~NK~D~~~~--~~i~~----~~ 134 (169)
T cd04114 73 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAN------------NKVITILVGNKIDLAER--REVSQ----QR 134 (169)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC------------CCCeEEEEEECcccccc--cccCH----HH
Confidence 88999999999999999999999999999998877642 36899999999999764 44442 44
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+.+.+... ++++| |||++|.|++++|+.+.+.+
T Consensus 135 ~~~~~~~~~-------~~~~~---------~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 135 AEEFSDAQD-------MYYLE---------TSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred HHHHHHHcC-------CeEEE---------eeCCCCCCHHHHHHHHHHHh
Confidence 556655444 45777 99999999999999988764
No 97
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.95 E-value=1.3e-26 Score=196.62 Aligned_cols=157 Identities=21% Similarity=0.314 Sum_probs=119.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+++|++|||||||+++|..+.+. .+.+|+|.++. .+.+ ..+.+.+|||+|++++..++.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~---------------~~~~~~l~D~~G~~~~~~~~~ 62 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY---------------KNISFTVWDVGGQDKIRPLWR 62 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE---------------CCEEEEEEECCCCHhHHHHHH
Confidence 58999999999999999999988886 46788887653 3333 357899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++|+|||++++.+|+.+..|+..+..... ..++|++||+||+|+.+.. . ..
T Consensus 63 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~NK~Dl~~~~----~-------~~ 120 (159)
T cd04150 63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDE-----------LRDAVLLVFANKQDLPNAM----S-------AA 120 (159)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHH-----------hcCCCEEEEEECCCCCCCC----C-------HH
Confidence 999999999999999999999999888877754321 1258999999999996431 1 11
Q ss_pred HHHHHcCCCCCC-cCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSS-EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 182 ~~~~~~~~~~~~-~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
++...+++.... ..+.++| +||++|.|++++|+.|.+
T Consensus 121 ~i~~~~~~~~~~~~~~~~~~---------~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 121 EVTDKLGLHSLRNRNWYIQA---------TCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHhCccccCCCCEEEEE---------eeCCCCCCHHHHHHHHhc
Confidence 222333321111 1234556 999999999999988754
No 98
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.95 E-value=3.1e-26 Score=198.77 Aligned_cols=172 Identities=19% Similarity=0.303 Sum_probs=132.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+++|++|||||||+++|+.+.+... .+|.|.++....+... ++..+.+.+|||+|++++..+
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~------------~~~~~~l~l~Dt~G~~~~~~~ 68 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLG------------NSKGITFHFWDVGGQEKLRPL 68 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeecc------------CCCceEEEEEECCCcHhHHHH
Confidence 358999999999999999999998888654 6777777665555442 145688999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++.+|++|+|||+++..+++.+..|+.++..... ..++|++||+||+|+... +. .++
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-----------~~~~p~iiv~NK~D~~~~----~~----~~~ 129 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-----------NQGVPVLVLANKQDLPNA----LS----VSE 129 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-----------cCCCcEEEEEECcCcccc----CC----HHH
Confidence 99999999999999999999999999889888876532 136899999999998643 11 133
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
..++........ ...+++++ |||++|.|++++++.+++.+++.+
T Consensus 130 ~~~~~~~~~~~~-~~~~~~~~---------~SA~~~~gi~~l~~~l~~~l~~~~ 173 (183)
T cd04152 130 VEKLLALHELSA-STPWHVQP---------ACAIIGEGLQEGLEKLYEMILKRR 173 (183)
T ss_pred HHHHhCccccCC-CCceEEEE---------eecccCCCHHHHHHHHHHHHHHHH
Confidence 444433212111 01245667 999999999999999999887654
No 99
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.95 E-value=2.8e-26 Score=199.72 Aligned_cols=165 Identities=19% Similarity=0.288 Sum_probs=135.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
.||+|+|++|||||||+++|..+.+...+.+|++..+. ..+.++ +..+.+.+||++|++.+.....
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~-------------~~~~~l~i~Dt~g~~~~~~~~~ 67 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVD-------------GKPVQLALWDTAGQEEYERLRP 67 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEEC-------------CEEEEEEEEECCCChhccccch
Confidence 59999999999999999999988887777777665553 344444 4667899999999999888777
Q ss_pred hhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc--------CCccC
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE--------GTRGS 172 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~--------~r~v~ 172 (333)
.++.++|++|+|||+++.++|+.+. .|+..+.... .++|++|||||+|+.... .+.+.
T Consensus 68 ~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~-------------~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~ 134 (187)
T cd04129 68 LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC-------------PNVPVILVGLKKDLRQDAVAKEEYRTQRFVP 134 (187)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEeeChhhhhCcccccccccCCcCC
Confidence 7889999999999999999999996 6999987664 369999999999996421 13344
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.+++..+++.++. ++||| |||++|.|++++|+.+.+.++..
T Consensus 135 ----~~~~~~~~~~~~~------~~~~e---------~Sa~~~~~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 135 ----IQQGKRVAKEIGA------KKYME---------CSALTGEGVDDVFEAATRAALLV 175 (187)
T ss_pred ----HHHHHHHHHHhCC------cEEEE---------ccCCCCCCHHHHHHHHHHHHhcc
Confidence 3778889998885 35777 99999999999999999877654
No 100
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.94 E-value=2.9e-26 Score=197.54 Aligned_cols=161 Identities=23% Similarity=0.341 Sum_probs=123.7
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+++|++|||||||+++|..+.+. .+.+|++.++.. +.+ ..+.+.+|||+|++++..+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~---------------~~~~l~l~D~~G~~~~~~~ 73 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY---------------KNISFTVWDVGGQDKIRPL 73 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE---------------CCEEEEEEECCCChhhHHH
Confidence 3589999999999999999999887774 467888876642 332 2578999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++++|++|+|||++++.+++.+..|+..+..... ..++|++|||||+|+.+.. .
T Consensus 74 ~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~-----------~~~~piilv~NK~Dl~~~~----~------- 131 (175)
T smart00177 74 WRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDE-----------LRDAVILVFANKQDLPDAM----K------- 131 (175)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHh-----------hcCCcEEEEEeCcCcccCC----C-------
Confidence 99999999999999999999999999888888754321 1368999999999997531 1
Q ss_pred HHHHHHHcCCCCCCc-CCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSE-ELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~-~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
..++...+++..... .+.+++ +||++|.|++++|+.|.+.+
T Consensus 132 ~~~i~~~~~~~~~~~~~~~~~~---------~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 132 AAEITEKLGLHSIRDRNWYIQP---------TCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred HHHHHHHhCccccCCCcEEEEE---------eeCCCCCCHHHHHHHHHHHh
Confidence 233444444321111 122445 99999999999999887654
No 101
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.94 E-value=2.5e-26 Score=196.76 Aligned_cols=160 Identities=19% Similarity=0.286 Sum_probs=122.4
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+++|++|||||||+++|..+.+. .+.+|+|.++. .+.. ..+.+.+|||+|++++..+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~---------------~~~~~~l~Dt~G~~~~~~~ 69 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY---------------KNVKFNVWDVGGQDKIRPL 69 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE---------------CCEEEEEEECCCCHHHHHH
Confidence 4589999999999999999999987775 45678887664 2322 3578999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++++|++|+|||++++.+|+++..|+.++..... ..++|++||+||+|+... +. .++
T Consensus 70 ~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~NK~Dl~~~----~~----~~~ 130 (168)
T cd04149 70 WRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDRE-----------MRDALLLVFANKQDLPDA----MK----PHE 130 (168)
T ss_pred HHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHh-----------hcCCcEEEEEECcCCccC----CC----HHH
Confidence 99999999999999999999999999888877754321 136899999999999642 22 244
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
+++++....+.. ..++++| |||++|.|++++|+.|.+
T Consensus 131 i~~~~~~~~~~~--~~~~~~~---------~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 131 IQEKLGLTRIRD--RNWYVQP---------SCATSGDGLYEGLTWLSS 167 (168)
T ss_pred HHHHcCCCccCC--CcEEEEE---------eeCCCCCChHHHHHHHhc
Confidence 554432111110 0135677 999999999999988754
No 102
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.94 E-value=3.9e-26 Score=198.11 Aligned_cols=164 Identities=23% Similarity=0.332 Sum_probs=126.5
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+|+|++|||||||++++..+.+.. +.+|++.++. .+.. ..+.+.+|||+|++++..+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~---------------~~~~~~l~D~~G~~~~~~~ 77 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY---------------KNLKFTMWDVGGQDKLRPL 77 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE---------------CCEEEEEEECCCCHhHHHH
Confidence 35799999999999999999999887764 6678786653 2332 3578999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++++|++|+|||++++.+|+++..|+..+..... ..++|++||+||.|+.+. +.
T Consensus 78 ~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~-----------~~~~piilv~NK~Dl~~~----~~------- 135 (182)
T PTZ00133 78 WRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDE-----------LRDAVLLVFANKQDLPNA----MS------- 135 (182)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHh-----------hcCCCEEEEEeCCCCCCC----CC-------
Confidence 99999999999999999999999998887777644311 126899999999999643 11
Q ss_pred HHHHHHHcCCCCCC-cCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSS-EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 180 ~~~~~~~~~~~~~~-~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
..+++..+++.... ..++++| +||++|.|++++|+.+.+.+.+.
T Consensus 136 ~~~i~~~l~~~~~~~~~~~~~~---------~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 136 TTEVTEKLGLHSVRQRNWYIQG---------CCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred HHHHHHHhCCCcccCCcEEEEe---------eeCCCCCCHHHHHHHHHHHHHHh
Confidence 12344555543111 1134557 99999999999999999887764
No 103
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.94 E-value=7e-26 Score=191.33 Aligned_cols=162 Identities=23% Similarity=0.338 Sum_probs=134.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+++|++|||||||++++++..+...+.++.+..+ .+.+.++ +..+.+.+||++|++++..++.
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~i~D~~g~~~~~~~~~ 66 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLD-------------GEDVQLNILDTAGQEDYAAIRD 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEEC-------------CEEEEEEEEECCChhhhhHHHH
Confidence 5999999999999999999999988877777766544 3444444 5678899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++.+|++++|||++++.+|+.+..|+..+..... ..++|+++|+||+|+... +.+. .++..
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piiiv~NK~D~~~~--~~~~----~~~~~ 129 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-----------DDNVPLLLVGNKCDLEDK--RQVS----SEEAA 129 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEEccccccc--cccC----HHHHH
Confidence 999999999999999999999999999988887632 137999999999999763 2233 25566
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.+++.++ +++++ +||++|.|++++++.+.+.+.
T Consensus 130 ~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 130 NLARQWG-------VPYVE---------TSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred HHHHHhC-------CeEEE---------eeCCCCCCHHHHHHHHHHHHH
Confidence 7777766 46788 999999999999999887664
No 104
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.94 E-value=1.1e-25 Score=200.29 Aligned_cols=166 Identities=23% Similarity=0.357 Sum_probs=140.2
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
......+||+|+|++|||||||+++++.+.+...+.+|++.++....+..+ +..+.+.+|||+|+++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~i~i~~~Dt~g~~~ 70 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTN-------------CGPICFNVWDTAGQEK 70 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEEC-------------CeEEEEEEEECCCchh
Confidence 456677999999999999999999999998988899999998877776654 5679999999999999
Q ss_pred hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
+..++..++..++++|+|||+++..+|..+..|+..+.... .++|+++||||+|+.+. .+.
T Consensus 71 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-------------~~~~i~lv~nK~Dl~~~---~~~--- 131 (215)
T PTZ00132 71 FGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-------------ENIPIVLVGNKVDVKDR---QVK--- 131 (215)
T ss_pred hhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEECccCccc---cCC---
Confidence 99999999999999999999999999999999999998764 37899999999998643 232
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
....++++..+ +.|+| +||++|.|+++.|..+.+.++.
T Consensus 132 --~~~~~~~~~~~-------~~~~e---------~Sa~~~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 132 --ARQITFHRKKN-------LQYYD---------ISAKSNYNFEKPFLWLARRLTN 169 (215)
T ss_pred --HHHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHhh
Confidence 22345666555 35777 9999999999999988887765
No 105
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.94 E-value=1.2e-25 Score=187.69 Aligned_cols=158 Identities=29% Similarity=0.516 Sum_probs=136.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+++|.+|||||||+++|++..+...+.+|.+.++....+..+ +..+.+.+||++|++.+..+..
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~l~D~~g~~~~~~~~~ 67 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEID-------------GKTVKLQIWDTAGQERFRSITP 67 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEEC-------------CEEEEEEEEecCChHHHHHHHH
Confidence 589999999999999999999999988888888988888888765 4678899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++|+|||++++++++.+..|+..+..... ...|+++|+||+|+... ..+. .++++
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~------------~~~p~ivv~nK~D~~~~--~~~~----~~~~~ 129 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAP------------ENIPIILVGNKIDLEDQ--RQVS----TEEAQ 129 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC------------CCCcEEEEEEccccccc--cccc----HHHHH
Confidence 999999999999999999999999999999988742 36899999999999733 2333 37778
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
+++...+ +++++ +||+++.|++++++.+.
T Consensus 130 ~~~~~~~-------~~~~~---------~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 130 QFAKENG-------LLFFE---------TSAKTGENVEELFQSLA 158 (159)
T ss_pred HHHHHcC-------CeEEE---------EecCCCCCHHHHHHHHh
Confidence 8887754 56888 99999999999888775
No 106
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.94 E-value=6.6e-26 Score=194.02 Aligned_cols=162 Identities=22% Similarity=0.330 Sum_probs=125.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
||+|+|++|||||||+++|++..+. .+.+|++.++. .+.+ ..+.+.+|||+|++++..++..
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~~~~---------------~~~~i~l~Dt~G~~~~~~~~~~ 62 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--TVEY---------------KNLKFTIWDVGGKHKLRPLWKH 62 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--EEEE---------------CCEEEEEEECCCChhcchHHHH
Confidence 6899999999999999999998775 47778776663 3333 3578999999999999999999
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
+++.+|++|+|||++++.+|+++..|+..+..... ..+.|++||+||+|+... ++ .+++++
T Consensus 63 ~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~NK~Dl~~~----~~----~~~~~~ 123 (169)
T cd04158 63 YYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKE-----------LRDALLLIFANKQDVAGA----LS----VEEMTE 123 (169)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChh-----------hCCCCEEEEEeCcCcccC----CC----HHHHHH
Confidence 99999999999999999999999999998875421 125899999999999642 33 255666
Q ss_pred HHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 183 WVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 183 ~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+++..++. ....+.++| |||++|.|++++|+.+.+.+..
T Consensus 124 ~~~~~~~~-~~~~~~~~~---------~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 124 LLSLHKLC-CGRSWYIQG---------CDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred HhCCcccc-CCCcEEEEe---------CcCCCCCCHHHHHHHHHHHHhh
Confidence 65332211 000124666 9999999999999998876554
No 107
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=7e-26 Score=193.12 Aligned_cols=164 Identities=19% Similarity=0.253 Sum_probs=124.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|.++.+...+..+. .++ .....+. +..+.+.+|||+|.+.+...+.
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~-~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~~~~ 65 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEI-TIPADVT-------------PERVPTTIVDTSSRPQDRANLA 65 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cce-Eeeeeec-------------CCeEEEEEEeCCCchhhhHHHh
Confidence 489999999999999999999998876544432 222 2222332 4678899999999998888877
Q ss_pred hhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
.++..+|++|+|||++++.+|+.+. .|+..+.... .++|+++|+||+|+.+.. ... .+.+..
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-------------~~~pviiv~nK~Dl~~~~--~~~--~~~~~~ 128 (166)
T cd01893 66 AEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-------------VKVPIILVGNKSDLRDGS--SQA--GLEEEM 128 (166)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEEchhccccc--chh--HHHHHH
Confidence 8889999999999999999999985 6888887764 268999999999997652 111 012334
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
..+++.+... .+++| |||++|.|++++|+.+.+.+++
T Consensus 129 ~~~~~~~~~~-----~~~~e---------~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 129 LPIMNEFREI-----ETCVE---------CSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred HHHHHHHhcc-----cEEEE---------eccccccCHHHHHHHHHHHhcC
Confidence 4444444321 25777 9999999999999998887654
No 108
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.94 E-value=1.5e-27 Score=198.50 Aligned_cols=169 Identities=19% Similarity=0.287 Sum_probs=152.0
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
-...||++|+|..+|||||++++||.+-|...+..|+|+++..+.+.+. +..+.+.+|||+|+++|.
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~-------------~Edvr~mlWdtagqeEfD 83 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVL-------------IEDVRSMLWDTAGQEEFD 83 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhh-------------HHHHHHHHHHhccchhHH
Confidence 3456899999999999999999999999999999999999999988876 677889999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.+...||++|.+.++||+.+|+.||+.+..|+.++...+. ++|.++|-||+||.++ ..+..
T Consensus 84 aItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~-------------~IPtV~vqNKIDlved--s~~~~---- 144 (246)
T KOG4252|consen 84 AITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETE-------------RIPTVFVQNKIDLVED--SQMDK---- 144 (246)
T ss_pred HHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhc-------------cCCeEEeeccchhhHh--hhcch----
Confidence 9999999999999999999999999999999999988864 8999999999999987 45664
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++++.+++++.+ -++- +|+|+..|+..+|..|++.+.+...
T Consensus 145 ~evE~lak~l~~-------RlyR---------tSvked~NV~~vF~YLaeK~~q~~k 185 (246)
T KOG4252|consen 145 GEVEGLAKKLHK-------RLYR---------TSVKEDFNVMHVFAYLAEKLTQQKK 185 (246)
T ss_pred HHHHHHHHHhhh-------hhhh---------hhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 778888888874 3555 9999999999999999998887654
No 109
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.94 E-value=1.7e-26 Score=196.90 Aligned_cols=154 Identities=21% Similarity=0.271 Sum_probs=117.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
.|+|+|++|||||||+++|+++.+...+.+|+|.+. . .++ ...+.+.+||++|+++|..++..
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~--~i~-------------~~~~~l~i~Dt~G~~~~~~~~~~ 63 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--V--AIP-------------TQDAIMELLEIGGSQNLRKYWKR 63 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--E--EEe-------------eCCeEEEEEECCCCcchhHHHHH
Confidence 389999999999999999999988888888988653 2 222 34688999999999999999999
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH--HHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV--DAA 180 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~--~~~ 180 (333)
+++++|++|+|||+++..+|..+..|+.++.... .++|+++|+||+|+... +.+.. +. ..+
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~-------------~~~piilv~NK~Dl~~~--~~~~~--i~~~~~~ 126 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHP-------------PDLPLVVLANKQDLPAA--RSVQE--IHKELEL 126 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC-------------CCCcEEEEEeCcCCcCC--CCHHH--HHHHhCC
Confidence 9999999999999999999999999998886542 37999999999999754 22210 00 012
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeecc------CcCHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKE------ARYDKEAVMKFF 226 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~------g~~v~~~~~~l~ 226 (333)
.+++++.+ ++|+| |||++ ++||+++|+.++
T Consensus 127 ~~~~~~~~-------~~~~~---------~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 127 EPIARGRR-------WILQG---------TSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred hhhcCCCc-------eEEEE---------eeecCCCChhHHHHHHHHHHHHh
Confidence 23333222 45666 66666 877777777664
No 110
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.94 E-value=2.6e-25 Score=195.39 Aligned_cols=163 Identities=22% Similarity=0.286 Sum_probs=129.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
||+|+|++|||||||+++|+++.+...+.+|++ ++..+.+.+. +..+.++|||++|++.|..++..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~-------------~~~~~l~i~D~~G~~~~~~~~~~ 66 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVG-------------GVSLTLDILDTSGSYSFPAMRKL 66 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEEC-------------CEEEEEEEEECCCchhhhHHHHH
Confidence 699999999999999999999998877777765 3445556554 45688999999999999999889
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
++..+|++|+|||++++.+|+.+..|+..+..... ..++|++||+||+|+.... +.+.. +.+.+
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~NK~Dl~~~~-~~v~~----~~~~~ 130 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKE-----------DKFVPIVVVGNKADSLEEE-RQVPA----KDALS 130 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCcEEEEEEcccccccc-ccccH----HHHHH
Confidence 99999999999999999999999999998877642 1369999999999997531 33332 33333
Q ss_pred HHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 183 WVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 183 ~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
...... .++|++ +||++|.|++++|+.+.+.+.
T Consensus 131 ~~~~~~------~~~~~~---------~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 131 TVELDW------NCGFVE---------TSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred HHHhhc------CCcEEE---------ecCCCCCCHHHHHHHHHHHhh
Confidence 322111 146777 999999999999999987654
No 111
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.94 E-value=3.1e-25 Score=186.38 Aligned_cols=159 Identities=24% Similarity=0.397 Sum_probs=133.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
||+|+|++|||||||+++|++..+...+.++.+ +...+.+.++ +..+.+++||++|++.+..++..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~-------------~~~~~~~l~D~~g~~~~~~~~~~ 66 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVD-------------GETYTLDILDTAGQEEFSAMRDL 66 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEEC-------------CEEEEEEEEECCChHHHHHHHHH
Confidence 699999999999999999998888888888776 4455555554 45788999999999999999999
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
++..+|++|+|||+++.+++.++..|...+..... ....|+++|+||+|+... +.++ .+.+.+
T Consensus 67 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~D~~~~--~~~~----~~~~~~ 129 (160)
T cd00876 67 YIRQGDGFILVYSITDRESFEEIKGYREQILRVKD-----------DEDIPIVLVGNKCDLENE--RQVS----KEEGKA 129 (160)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCcEEEEEECCccccc--ceec----HHHHHH
Confidence 99999999999999999999999999888877632 136899999999999864 3444 377888
Q ss_pred HHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 183 WVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 183 ~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+++.++ +++++ +||+++.|++++++.+.+.
T Consensus 130 ~~~~~~-------~~~~~---------~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 130 LAKEWG-------CPFIE---------TSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred HHHHcC-------CcEEE---------eccCCCCCHHHHHHHHHhh
Confidence 888776 46777 9999999999999888764
No 112
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.94 E-value=2.4e-25 Score=189.63 Aligned_cols=160 Identities=23% Similarity=0.363 Sum_probs=129.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|++..+...+.++....+ ...+..+ +..+.+.+||++|++++.....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~l~~~D~~g~~~~~~~~~ 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTVD-------------GKQVNLGLWDTAGQEEYDRLRP 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEEC-------------CEEEEEEEEeCCCcccccccch
Confidence 5999999999999999999999988777777765433 3344443 5678899999999999888888
Q ss_pred hhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC---------cc
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT---------RG 171 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r---------~v 171 (333)
.+++.+|++++|||++++.+|..+ ..|+..+.... .++|+++||||+|+...... .+
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v 133 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC-------------PNVPIILVGTKIDLRDDENTLKKLEKGKEPI 133 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-------------CCCCEEEEEccHHhhhchhhhhhcccCCCcc
Confidence 888999999999999999999886 46888887663 27999999999999865422 12
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
. .+++.+++..+++. +|+| +||++|.|++++++.+++
T Consensus 134 ~----~~~~~~~~~~~~~~------~~~~---------~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 134 T----PEEGEKLAKEIGAI------GYME---------CSALTQEGVKEVFEEAIR 170 (171)
T ss_pred C----HHHHHHHHHHhCCe------EEEE---------eecCCCCCHHHHHHHHhh
Confidence 2 36778888887742 5777 999999999999888764
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.93 E-value=2e-25 Score=188.54 Aligned_cols=159 Identities=22% Similarity=0.266 Sum_probs=119.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC-CCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS-SFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+|+|+|++|||||||+++|++.. +...+.+|+|.++. .+.. ..+.+.+|||+|++++..++.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~---------------~~~~~~l~Dt~G~~~~~~~~~ 63 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK---------------GNLSFTAFDMSGQGKYRGLWE 63 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE---------------CCEEEEEEECCCCHhhHHHHH
Confidence 58999999999999999999875 45567788876543 2222 357899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.++..+|++|+|||++++.+|..+..|+..+.....+. ..++|+++|+||+|+.... . ..
T Consensus 64 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~p~iiv~NK~Dl~~~~----~-------~~ 123 (162)
T cd04157 64 HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIK---------HRRVPILFFANKMDLPDAL----T-------AV 123 (162)
T ss_pred HHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccc---------cCCCCEEEEEeCccccCCC----C-------HH
Confidence 99999999999999999999999988988876542110 1369999999999997541 1 11
Q ss_pred HHHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 182 QWVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 182 ~~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
++...+++... ...+++++ |||++|.|++++|+.|.+
T Consensus 124 ~~~~~l~~~~~~~~~~~~~~---------~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 124 KITQLLGLENIKDKPWHIFA---------SNALTGEGLDEGVQWLQA 161 (162)
T ss_pred HHHHHhCCccccCceEEEEE---------eeCCCCCchHHHHHHHhc
Confidence 22222232110 01134677 999999999999988754
No 114
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.93 E-value=6.8e-25 Score=189.13 Aligned_cols=164 Identities=25% Similarity=0.340 Sum_probs=134.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
.||+|+|++|||||||+++|++..+...+.+|.+..+ ...+.++ +..+.+.+|||+|++++..++.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~l~D~~g~~~~~~~~~ 67 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYK-------------GQDYHLEIVDTAGQDEYSILPQ 67 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEEC-------------CEEEEEEEEECCChHhhHHHHH
Confidence 5999999999999999999999988877777776554 3445554 4567899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.++..+|++|+|||+++..+|+.+..|+..+.+... ..+.|+|+|+||+|+... +.+. .++..
T Consensus 68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~p~ilv~NK~Dl~~~--~~~~----~~~~~ 130 (180)
T cd04137 68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLG-----------KESVPIVLVGNKSDLHTQ--RQVS----TEEGK 130 (180)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEEchhhhhc--CccC----HHHHH
Confidence 999999999999999999999999999888877531 136899999999999754 3343 24566
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.+++.++ +++++ +||+++.|++++++++.+.+.+.
T Consensus 131 ~~~~~~~-------~~~~~---------~Sa~~~~gv~~l~~~l~~~~~~~ 165 (180)
T cd04137 131 ELAESWG-------AAFLE---------SSARENENVEEAFELLIEEIEKV 165 (180)
T ss_pred HHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHHh
Confidence 6776665 46777 99999999999999999877654
No 115
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.93 E-value=4.7e-25 Score=189.29 Aligned_cols=161 Identities=17% Similarity=0.304 Sum_probs=122.4
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+++|++|||||||+++|++..+ ..+.+|+|.. ...+.++ .+.+.+|||+|++.+..
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~---------------~~~l~l~D~~G~~~~~~ 73 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ--IKTLEYE---------------GYKLNIWDVGGQKTLRP 73 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc--eEEEEEC---------------CEEEEEEECCCCHHHHH
Confidence 4457999999999999999999998754 4566777743 3444442 47799999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|..+..|+..+..... ..++|++||+||+|+.... . .+
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~iiv~nK~Dl~~~~----~----~~ 134 (173)
T cd04154 74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEER-----------LAGATLLILANKQDLPGAL----S----EE 134 (173)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChh-----------hcCCCEEEEEECcccccCC----C----HH
Confidence 999999999999999999999999999888888754321 1378999999999997531 1 24
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
++.++.+..++. ...++++| |||++|.|++++|+.+..
T Consensus 135 ~~~~~~~~~~~~--~~~~~~~~---------~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 135 EIREALELDKIS--SHHWRIQP---------CSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred HHHHHhCccccC--CCceEEEe---------ccCCCCcCHHHHHHHHhc
Confidence 444444322111 11357888 999999999998887753
No 116
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.93 E-value=4.5e-25 Score=186.23 Aligned_cols=157 Identities=21% Similarity=0.310 Sum_probs=118.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
+|+|+|++|||||||+++|+++.+.. ..+|++.++ ..+.. +..+.+.+||++|++++..++..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~--------------~~~~~l~i~D~~G~~~~~~~~~~ 63 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQL--------------EKHLSLTVWDVGGQEKMRTVWKC 63 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEe--------------CCceEEEEEECCCCHhHHHHHHH
Confidence 58999999999999999999988764 456767554 33333 23578999999999999999988
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
++..+|++|+|||+++..++..+..|+.++..... ..++|++||+||+|+.... . ..+
T Consensus 64 ~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~-----------~~~~piilv~nK~Dl~~~~----~-------~~~ 121 (160)
T cd04156 64 YLENTDGLVYVVDSSDEARLDESQKELKHILKNEH-----------IKGVPVVLLANKQDLPGAL----T-------AEE 121 (160)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchh-----------hcCCCEEEEEECcccccCc----C-------HHH
Confidence 99999999999999999999999888888765421 1368999999999996431 1 122
Q ss_pred HHHHcCCCCCC--cCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 183 WVEKQGLLPSS--EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 183 ~~~~~~~~~~~--~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
+...+++..+. ..+++++ |||++|.|++++++.+.+
T Consensus 122 i~~~~~~~~~~~~~~~~~~~---------~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 122 ITRRFKLKKYCSDRDWYVQP---------CSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHcCCcccCCCCcEEEEe---------cccccCCChHHHHHHHhc
Confidence 33333322111 1245677 999999999999888753
No 117
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.93 E-value=1.2e-24 Score=185.95 Aligned_cols=156 Identities=20% Similarity=0.243 Sum_probs=120.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
+|+++|++|||||||+++|++. +...+.+|+|.. ...+.+ ..+.+++||++|+++++.++..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~---------------~~~~~~i~D~~G~~~~~~~~~~ 62 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRL---------------DKYEVCIFDLGGGANFRGIWVN 62 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEE---------------CCEEEEEEECCCcHHHHHHHHH
Confidence 4899999999999999999976 777788888865 334443 2578999999999999999999
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
+++.+|++|+|||+++..+|+.+..|+..+..... ..++|++||+||+|+.... . ..+
T Consensus 63 ~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~-----------~~~~piliv~NK~Dl~~~~--~---------~~~ 120 (167)
T cd04161 63 YYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPR-----------VSGKPILVLANKQDKKNAL--L---------GAD 120 (167)
T ss_pred HHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCcc-----------ccCCcEEEEEeCCCCcCCC--C---------HHH
Confidence 99999999999999999999999999998876532 1368999999999997642 1 111
Q ss_pred HHHHcCCCCCC----cCCCccccCCCCCceeeeeccC------cCHHHHHHHHHH
Q 019959 183 WVEKQGLLPSS----EELPLTESFPGGGGLIAAAKEA------RYDKEAVMKFFR 227 (333)
Q Consensus 183 ~~~~~~~~~~~----~~~p~~E~~~~~~~~~~SAk~g------~~v~~~~~~l~~ 227 (333)
+.+.+++.... ..+++++ |||++| .|++++|++|.+
T Consensus 121 i~~~~~l~~~~~~~~~~~~~~~---------~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 121 VIEYLSLEKLVNENKSLCHIEP---------CSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred HHHhcCcccccCCCCceEEEEE---------eEceeCCCCccccCHHHHHHHHhc
Confidence 22222221111 1245666 999998 789999999864
No 118
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.93 E-value=1.6e-24 Score=186.38 Aligned_cols=158 Identities=22% Similarity=0.314 Sum_probs=120.6
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+++|++|||||||+++|+.+.+.. +.+|++.++. .+.+ ..+.+.+||++|++++...+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~---------------~~~~~~l~D~~G~~~~~~~~ 76 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVY---------------KNIRFLMWDIGGQESLRSSW 76 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEE---------------CCeEEEEEECCCCHHHHHHH
Confidence 4799999999999999999999888765 5677776653 2333 25779999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++++|++|+|||++++++|..+..|+.++..... ..++|++||+||+|+... +. .
T Consensus 77 ~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~-----------~~~~p~viv~NK~Dl~~~----~~-------~ 134 (174)
T cd04153 77 NTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHED-----------LRKAVLLVLANKQDLKGA----MT-------P 134 (174)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-----------hcCCCEEEEEECCCCCCC----CC-------H
Confidence 9999999999999999999999988888877755421 136899999999998653 11 1
Q ss_pred HHHHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 181 ~~~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
.++.+.+++... ..++++++ |||++|.|++++++.|.+
T Consensus 135 ~~i~~~l~~~~~~~~~~~~~~---------~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 135 AEISESLGLTSIRDHTWHIQG---------CCALTGEGLPEGLDWIAS 173 (174)
T ss_pred HHHHHHhCcccccCCceEEEe---------cccCCCCCHHHHHHHHhc
Confidence 223333332111 01256777 999999999999888753
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.92 E-value=3.5e-24 Score=180.97 Aligned_cols=156 Identities=21% Similarity=0.321 Sum_probs=115.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
||+|+|++|||||||+++|..+.+. .+.+|++.++. .+.+ ..+.+.+|||+|++++..++..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~~---------------~~~~~~i~Dt~G~~~~~~~~~~ 62 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TVTY---------------KNLKFQVWDLGGQTSIRPYWRC 62 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EEEE---------------CCEEEEEEECCCCHHHHHHHHH
Confidence 6899999999999999999887765 35667776543 3332 3577999999999999999999
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
++..+|++|+|||++++.++.....|+..+.+... ..++|+++|+||+|+.... . ..+
T Consensus 63 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~piiiv~nK~Dl~~~~----~-------~~~ 120 (158)
T cd04151 63 YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEE-----------LKGAVLLVFANKQDMPGAL----S-------EAE 120 (158)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-----------hcCCcEEEEEeCCCCCCCC----C-------HHH
Confidence 99999999999999999888877666665533211 1368999999999997531 1 122
Q ss_pred HHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 183 WVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 183 ~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
++..++.... ...++++| |||++|.|++++++.+++
T Consensus 121 i~~~~~~~~~~~~~~~~~~---------~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 121 ISEKLGLSELKDRTWSIFK---------TSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHhCccccCCCcEEEEE---------eeccCCCCHHHHHHHHhc
Confidence 3333332111 11245777 999999999999998864
No 120
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.92 E-value=4.9e-24 Score=179.69 Aligned_cols=156 Identities=24% Similarity=0.370 Sum_probs=119.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
||+|+|.+|||||||++++++..+ ..+.+|++..+. .+.+. .+.+.+||++|++.+...+..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~--~~~~~---------------~~~~~i~D~~G~~~~~~~~~~ 62 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE--TVEYK---------------NVSFTVWDVGGQDKIRPLWKH 62 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE--EEEEC---------------CEEEEEEECCCChhhHHHHHH
Confidence 699999999999999999998874 456667665543 34332 467999999999999999999
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
++..+|++++|||+++++++..+..|+..+..... ..+.|+++|+||+|+.... . .++..
T Consensus 63 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-----------~~~~piiiv~nK~D~~~~~----~----~~~~~- 122 (158)
T cd00878 63 YYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-----------LKGVPLLIFANKQDLPGAL----S----VSELI- 122 (158)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-----------cCCCcEEEEeeccCCcccc----C----HHHHH-
Confidence 99999999999999999999999888888766532 1378999999999997642 1 12222
Q ss_pred HHHHcCCC-CCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 183 WVEKQGLL-PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 183 ~~~~~~~~-~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
+..+.. .....+++++ +||++|.|++++|+.|..
T Consensus 123 --~~~~~~~~~~~~~~~~~---------~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 123 --EKLGLEKILGRRWHIQP---------CSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred --HhhChhhccCCcEEEEE---------eeCCCCCCHHHHHHHHhh
Confidence 222221 0111367888 999999999998888754
No 121
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.92 E-value=6e-24 Score=180.62 Aligned_cols=160 Identities=20% Similarity=0.312 Sum_probs=118.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC------CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSS------FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
+|+|+|++|||||||+++|++... ...+.+|++.++. .+.++ .+.+.+|||+|++.+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~---------------~~~~~l~Dt~G~~~~ 63 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG---------------NARLKFWDLGGQESL 63 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC---------------CEEEEEEECCCChhh
Confidence 589999999999999999985422 2344566666553 33332 477999999999999
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
..++..++..+|++|+|||+++.+++..+..|+..+..... ..++|++||+||+|+... +.
T Consensus 64 ~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~-----------~~~~p~ilv~NK~D~~~~----~~---- 124 (167)
T cd04160 64 RSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEA-----------LEGVPLLILANKQDLPDA----LS---- 124 (167)
T ss_pred HHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChh-----------hcCCCEEEEEEccccccC----CC----
Confidence 99999999999999999999999999998888888766421 136899999999998653 11
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
.++...+.+..........+++++ +||++|.|++++++.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~---------~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 125 VEEIKEVFQDKAEEIGRRDCLVLP---------VSALEGTGVREGIEWLVE 166 (167)
T ss_pred HHHHHHHhccccccccCCceEEEE---------eeCCCCcCHHHHHHHHhc
Confidence 133444433321101111356777 999999999999888754
No 122
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.91 E-value=1.2e-23 Score=183.08 Aligned_cols=164 Identities=18% Similarity=0.281 Sum_probs=124.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+. .+.+|.+... ..+.++ .+.+.+||++|++++..
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~---------------~~~~~l~D~~G~~~~~~ 78 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIG---------------NIKFKTFDLGGHEQARR 78 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEEC---------------CEEEEEEECCCCHHHHH
Confidence 45689999999999999999999988763 5666666543 344443 36789999999999998
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..++.++|++|+|+|+++..+|.....|+.++..... ..+.|++||+||+|+.. .+. .+
T Consensus 79 ~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~-----------~~~~pvivv~NK~Dl~~----~~~----~~ 139 (190)
T cd00879 79 LWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEE-----------LANVPFLILGNKIDLPG----AVS----EE 139 (190)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCcc-----------ccCCCEEEEEeCCCCCC----CcC----HH
Confidence 888899999999999999999999988888888865432 13689999999999964 233 24
Q ss_pred HHHHHHHHcCCCC---------CCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLP---------SSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 179 ~~~~~~~~~~~~~---------~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+.+++........ ....+++++ |||++|.|++++|+.+.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 140 ELRQALGLYGTTTGKGVSLKVSGIRPIEVFM---------CSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred HHHHHhCcccccccccccccccCceeEEEEE---------eEecCCCChHHHHHHHHhh
Confidence 4555544322110 001235667 9999999999999998764
No 123
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.91 E-value=2.4e-23 Score=180.80 Aligned_cols=161 Identities=16% Similarity=0.264 Sum_probs=120.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+++|.+|||||||+++|.++.+. .+.+|.+.+. ..+.+ ..+.+.+||++|++.+..
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~---------------~~~~~~~~D~~G~~~~~~ 76 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAI---------------GNIKFTTFDLGGHQQARR 76 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEE---------------CCEEEEEEECCCCHHHHH
Confidence 44589999999999999999999988764 3455555433 23333 247799999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..++..+|++|+|+|++++.++.....|+.++..... ..++|+++|+||+|+... ++. +
T Consensus 77 ~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~-----------~~~~piliv~NK~Dl~~~----~~~----~ 137 (184)
T smart00178 77 LWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEE-----------LATVPFLILGNKIDAPYA----ASE----D 137 (184)
T ss_pred HHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChh-----------hcCCCEEEEEeCccccCC----CCH----H
Confidence 999999999999999999999999998888888765421 136899999999998642 232 2
Q ss_pred HHHHHHHHcCCCCCC--------cCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSS--------EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~--------~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
++.+.+++.... ....+++ |||++|.|++++++.|...
T Consensus 138 ---~i~~~l~l~~~~~~~~~~~~~~~~i~~---------~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 138 ---ELRYALGLTNTTGSKGKVGVRPLEVFM---------CSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred ---HHHHHcCCCcccccccccCCceeEEEE---------eecccCCChHHHHHHHHhh
Confidence 334445442211 1122455 9999999999999998754
No 124
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.91 E-value=3.1e-23 Score=173.22 Aligned_cols=157 Identities=21% Similarity=0.358 Sum_probs=121.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
.|+|+|++|||||||+++|++..+...+.+|.+.++.. +..+ .+.+.+||++|++.+..++..
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~---------------~~~~~~~D~~g~~~~~~~~~~ 63 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG---------------NVTLKVWDLGGQPRFRSMWER 63 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC---------------CEEEEEEECCCCHhHHHHHHH
Confidence 38999999999999999999999998888988876643 3332 378999999999999999999
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
++..+|++++|+|+++..++..+..|+..+..... ..++|+++|+||+|+.... . ..+
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~p~iiv~nK~D~~~~~--~---------~~~ 121 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPS-----------LEGIPLLVLGNKNDLPGAL--S---------VDE 121 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-----------hcCCCEEEEEeCccccCCc--C---------HHH
Confidence 99999999999999999999888888877755321 1368999999999987541 1 122
Q ss_pred HHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 183 WVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 183 ~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
+....++... ...+++++ +||++|.|++++++.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~---------~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 122 LIEQMNLKSITDREVSCYS---------ISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHhCcccccCCceEEEE---------EEeccCCChHHHHHHHhh
Confidence 2333332211 11245667 999999999999988864
No 125
>PTZ00099 rab6; Provisional
Probab=99.90 E-value=7.7e-23 Score=176.58 Aligned_cols=141 Identities=21% Similarity=0.267 Sum_probs=120.9
Q ss_pred CCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHH
Q 019959 44 GSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKT 123 (333)
Q Consensus 44 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~ 123 (333)
+.|...+.+|+|.++..+.+.++ +..+.+.||||+|++++..++..+++++|++|+|||++++.+|+
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~-------------~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~ 69 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLD-------------EGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFE 69 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEEC-------------CEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHH
Confidence 46778899999999988888776 56899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCC
Q 019959 124 SLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFP 203 (333)
Q Consensus 124 ~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~ 203 (333)
.+..|+..+..... .++|++|||||+||... +.+.. +++..+++.++ +.|+|
T Consensus 70 ~~~~w~~~i~~~~~------------~~~piilVgNK~DL~~~--~~v~~----~e~~~~~~~~~-------~~~~e--- 121 (176)
T PTZ00099 70 NTTKWIQDILNERG------------KDVIIALVGNKTDLGDL--RKVTY----EEGMQKAQEYN-------TMFHE--- 121 (176)
T ss_pred HHHHHHHHHHHhcC------------CCCeEEEEEECcccccc--cCCCH----HHHHHHHHHcC-------CEEEE---
Confidence 99999999876531 36899999999999754 45553 67888888776 35777
Q ss_pred CCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 204 GGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 204 ~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
|||++|.|++++|+.+.+.+..
T Consensus 122 ------~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 122 ------TSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred ------EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998877644
No 126
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.90 E-value=1.2e-22 Score=174.73 Aligned_cols=161 Identities=15% Similarity=0.218 Sum_probs=115.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC-------CCCCCCc------ccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEe
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS-------SFSRPSQ------TIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWD 89 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~-------~~~~~~~------t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~D 89 (333)
+|+++|+++||||||+++|++.. +...+.+ +.|.++..+.+.+.- ...++..+.+.|||
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~--------~~~~~~~~~~~l~D 73 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNY--------KAKDGQEYLLNLID 73 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEE--------ecCCCCcEEEEEEE
Confidence 68999999999999999999642 2122222 224455444333210 00125678899999
Q ss_pred CCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC
Q 019959 90 ISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT 169 (333)
Q Consensus 90 t~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r 169 (333)
|+|+++|..+...+++.+|++|+|||+++..+++.+..|.... .. ++|+++|+||+|+....
T Consensus 74 t~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~~---------------~~~iiiv~NK~Dl~~~~-- 135 (179)
T cd01890 74 TPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-EN---------------NLEIIPVINKIDLPSAD-- 135 (179)
T ss_pred CCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-Hc---------------CCCEEEEEECCCCCcCC--
Confidence 9999999999999999999999999999988887777665433 22 57999999999986431
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
. .+...++++.+++.. .++++ +||++|.|++++++.+.+.
T Consensus 136 ~------~~~~~~~~~~~~~~~----~~~~~---------~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 136 P------ERVKQQIEDVLGLDP----SEAIL---------VSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred H------HHHHHHHHHHhCCCc----ccEEE---------eeccCCCCHHHHHHHHHhh
Confidence 0 133456667666421 23666 9999999999988888764
No 127
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.90 E-value=2.4e-22 Score=171.89 Aligned_cols=160 Identities=20% Similarity=0.309 Sum_probs=120.4
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...++|+|+|++|||||||++++.+..+. .+.+|.|.++ ..+.+. ...+.+||++|+..+..
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~~---------------~~~~~~~D~~G~~~~~~ 73 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQSD---------------GFKLNVWDIGGQRAIRP 73 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEEC---------------CEEEEEEECCCCHHHHH
Confidence 34689999999999999999999987653 3556666543 333332 36689999999999988
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
.+..+++.+|++++|+|+++..++.....|+..+..... ..++|+++++||+|+... .
T Consensus 74 ~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~D~~~~-----------~ 131 (173)
T cd04155 74 YWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEK-----------LAGVPVLVFANKQDLATA-----------A 131 (173)
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChh-----------hcCCCEEEEEECCCCccC-----------C
Confidence 888889999999999999999999888877777654421 136899999999998753 1
Q ss_pred HHHHHHHHcCCCCCCcC-CCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEE-LPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~-~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
...++.+.+++....+. .++++ +||++|.|++++++++.+
T Consensus 132 ~~~~i~~~l~~~~~~~~~~~~~~---------~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 132 PAEEIAEALNLHDLRDRTWHIQA---------CSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CHHHHHHHcCCcccCCCeEEEEE---------eECCCCCCHHHHHHHHhc
Confidence 23445555665432221 23456 999999999999988864
No 128
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.89 E-value=2e-22 Score=173.79 Aligned_cols=162 Identities=22% Similarity=0.396 Sum_probs=125.8
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+++|..|||||||++++..+.+. ...||.|.+. ..+.+. .+.+.+||++|+..++.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~--~~i~~~---------------~~~~~~~d~gG~~~~~~ 73 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNI--EEIKYK---------------GYSLTIWDLGGQESFRP 73 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEE--EEEEET---------------TEEEEEEEESSSGGGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc-ccCccccccc--ceeeeC---------------cEEEEEEeccccccccc
Confidence 56789999999999999999999977553 4677777554 445543 57799999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
.+..|+..+|++|+|+|.++.+.+.+....+.++..... ..++|++|++||.|+.+.. . .+
T Consensus 74 ~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~-----------~~~~piLIl~NK~D~~~~~----~----~~ 134 (175)
T PF00025_consen 74 LWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPE-----------LKDIPILILANKQDLPDAM----S----EE 134 (175)
T ss_dssp GGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGG-----------GTTSEEEEEEESTTSTTSS----T----HH
T ss_pred cceeeccccceeEEEEecccceeecccccchhhhcchhh-----------cccceEEEEeccccccCcc----h----hh
Confidence 999999999999999999999999998888888766532 2379999999999987541 1 13
Q ss_pred HHHHHHHHcCCCCCC--cCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSS--EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~--~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+.. ..+++.... ..+.++. |||++|.|+.+++++|.+.+
T Consensus 135 ~i~---~~l~l~~l~~~~~~~v~~---------~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 135 EIK---EYLGLEKLKNKRPWSVFS---------CSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp HHH---HHTTGGGTTSSSCEEEEE---------EBTTTTBTHHHHHHHHHHHH
T ss_pred HHH---hhhhhhhcccCCceEEEe---------eeccCCcCHHHHHHHHHhcC
Confidence 233 333322211 1244566 99999999999999998764
No 129
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=174.22 Aligned_cols=170 Identities=26% Similarity=0.405 Sum_probs=132.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+|+|+.|||||||+++|.++.+...+.+|++..+........ +..+++.+|||+|+++|+.++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~~~Dt~gq~~~~~~~ 71 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPY-------------RRNIKLQLWDTAGQEEYRSLR 71 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeC-------------CCEEEEEeecCCCHHHHHHHH
Confidence 3899999999999999999999999999999998887776666553 347889999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC----------
Q 019959 101 SILYSQINGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT---------- 169 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r---------- 169 (333)
..++.+++++++|||.++.. +++....|..++..... ...|+++|+||+|+......
T Consensus 72 ~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~------------~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~ 139 (219)
T COG1100 72 PEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP------------DDVPILLVGNKIDLFDEQSSSEEILNQLNR 139 (219)
T ss_pred HHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC------------CCceEEEEecccccccchhHHHHHHhhhhc
Confidence 99999999999999999954 55666899999988752 36899999999999876311
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeec--cCcCHHHHHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAK--EARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk--~g~~v~~~~~~l~~~l~~~ 232 (333)
.+. .......+...... ...+++ +||+ ++.++++++..+++.+...
T Consensus 140 ~~~----~~~~~~~~~~~~~~----~~~~~~---------~s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 140 EVV----LLVLAPKAVLPEVA----NPALLE---------TSAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred Ccc----hhhhHhHHhhhhhc----ccceeE---------eecccCCCcCHHHHHHHHHHHHHHh
Confidence 111 11122222211100 012555 9999 9999999999999988764
No 130
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.89 E-value=7.1e-22 Score=168.00 Aligned_cols=154 Identities=19% Similarity=0.149 Sum_probs=104.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh-------
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER------- 95 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~------- 95 (333)
+|+|+|++|||||||+++|++..+.....+....+.....+.+ ..+.+.||||+|+..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~---------------~~~~~~i~Dt~G~~~~~~~~~~ 66 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY---------------KYLRWQVIDTPGLLDRPLEERN 66 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc---------------CceEEEEEECCCcCCccccCCc
Confidence 7999999999999999999988764322211111222222221 346799999999732
Q ss_pred ---hhhhHHhhccCCcEEEEEEECCCcccH--HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 96 ---YKDCRSILYSQINGVIFVHDLSQRRTK--TSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 96 ---~~~~~~~~~~~ad~vIlV~D~s~~~S~--~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
+..+. .....+|++|+|+|+++..++ +....|+..+.... .+.|+++|+||+|+... +.
T Consensus 67 ~~~~~~~~-~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-------------~~~pvilv~NK~Dl~~~--~~ 130 (168)
T cd01897 67 TIEMQAIT-ALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-------------KNKPVIVVLNKIDLLTF--ED 130 (168)
T ss_pred hHHHHHHH-HHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-------------CcCCeEEEEEccccCch--hh
Confidence 11111 112236899999999988754 66667888886653 26899999999999754 22
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+ ....++++.. ..++++ |||++|.|++++++.+.+.+
T Consensus 131 ~------~~~~~~~~~~-------~~~~~~---------~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 131 L------SEIEEEEELE-------GEEVLK---------ISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred H------HHHHHhhhhc-------cCceEE---------EEecccCCHHHHHHHHHHHh
Confidence 1 2233333322 256777 99999999999999988765
No 131
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.88 E-value=6.2e-22 Score=167.12 Aligned_cols=155 Identities=17% Similarity=0.130 Sum_probs=102.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC---CCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG---SSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
.|+|+|++|||||||+++|++. .+.....++.+.+.....+.+. ....+.+|||+|+++|...
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------~~~~~~~~DtpG~~~~~~~ 67 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLP--------------SGKRLGFIDVPGHEKFIKN 67 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEec--------------CCcEEEEEECCChHHHHHH
Confidence 6899999999999999999963 3333333333444444444442 1357999999999999877
Q ss_pred HHhhccCCcEEEEEEECCCc---ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 100 RSILYSQINGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~---~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
...++..+|++|+|+|+++. .+++.+ ..+.... ..|+++|+||+|+.........
T Consensus 68 ~~~~~~~ad~ii~V~d~~~~~~~~~~~~~----~~~~~~~--------------~~~~ilv~NK~Dl~~~~~~~~~---- 125 (164)
T cd04171 68 MLAGAGGIDLVLLVVAADEGIMPQTREHL----EILELLG--------------IKRGLVVLTKADLVDEDWLELV---- 125 (164)
T ss_pred HHhhhhcCCEEEEEEECCCCccHhHHHHH----HHHHHhC--------------CCcEEEEEECccccCHHHHHHH----
Confidence 77778899999999999873 333332 2222221 2489999999999754211111
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
.++..++.+..+.. ..++++ +||++|.|++++++.+.
T Consensus 126 ~~~~~~~~~~~~~~----~~~~~~---------~Sa~~~~~v~~l~~~l~ 162 (164)
T cd04171 126 EEEIRELLAGTFLA----DAPIFP---------VSAVTGEGIEELKEYLD 162 (164)
T ss_pred HHHHHHHHHhcCcC----CCcEEE---------EeCCCCcCHHHHHHHHh
Confidence 13333333332211 256777 99999999999887764
No 132
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.88 E-value=1.1e-21 Score=172.86 Aligned_cols=156 Identities=16% Similarity=0.167 Sum_probs=109.8
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch----
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE---- 94 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e---- 94 (333)
.+.++|+|+|++|||||||++++++..+.....+..+.+.....+.++ ....+.+|||+|..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~ 104 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLP--------------DGREVLLTDTVGFIRDLP 104 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEec--------------CCceEEEeCCCccccCCC
Confidence 445799999999999999999999886543332222333334444443 12368999999962
Q ss_pred -----hhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC
Q 019959 95 -----RYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT 169 (333)
Q Consensus 95 -----~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r 169 (333)
.+.... ..+..+|++++|+|++++.++..+..|...+..... .++|+++|+||+|+....
T Consensus 105 ~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~------------~~~~viiV~NK~Dl~~~~-- 169 (204)
T cd01878 105 HQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGA------------EDIPMILVLNKIDLLDDE-- 169 (204)
T ss_pred HHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc------------CCCCEEEEEEccccCChH--
Confidence 222222 236689999999999999999888888877766532 368999999999997642
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
....++... ..++++ +||++|.|++++++.+.+.
T Consensus 170 ---------~~~~~~~~~-------~~~~~~---------~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 170 ---------ELEERLEAG-------RPDAVF---------ISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred ---------HHHHHhhcC-------CCceEE---------EEcCCCCCHHHHHHHHHhh
Confidence 111222211 246777 9999999999999888764
No 133
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.88 E-value=4.8e-22 Score=164.74 Aligned_cols=135 Identities=17% Similarity=0.223 Sum_probs=99.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc-----hhhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH-----ERYK 97 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~-----e~~~ 97 (333)
||+|+|++|||||||+++|++..+ .+.+|++.++ . -.+|||+|+ +.+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~-------~------------------~~~iDt~G~~~~~~~~~~ 54 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEY-------N------------------DGAIDTPGEYVENRRLYS 54 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEE-------c------------------CeeecCchhhhhhHHHHH
Confidence 899999999999999999998765 2334433322 1 268999997 3355
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.+.. .++++|++|+|||++++.++.. ..|...+ ..|+++|+||+|+.+. .+. .
T Consensus 55 ~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~------------------~~p~ilv~NK~Dl~~~---~~~----~ 107 (142)
T TIGR02528 55 ALIV-TAADADVIALVQSATDPESRFP-PGFASIF------------------VKPVIGLVTKIDLAEA---DVD----I 107 (142)
T ss_pred HHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc------------------cCCeEEEEEeeccCCc---ccC----H
Confidence 5544 4889999999999999998765 2444321 2489999999999642 222 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
++++++++..+. .++++ +||++|.|++++|+.+.
T Consensus 108 ~~~~~~~~~~~~------~~~~~---------~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 108 ERAKELLETAGA------EPIFE---------ISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHHHHHHHHcCC------CcEEE---------EecCCCCCHHHHHHHHh
Confidence 667778877764 25777 99999999998887763
No 134
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.88 E-value=1.2e-21 Score=166.82 Aligned_cols=160 Identities=17% Similarity=0.113 Sum_probs=107.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch----hhhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE----RYKD 98 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e----~~~~ 98 (333)
.|+|||.+|||||||+++|.+........+..+.+.....+.++ ....+.+|||||.. .+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~--------------~~~~~~l~DtpG~~~~~~~~~~ 67 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVD--------------DGRSFVVADIPGLIEGASEGKG 67 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcC--------------CCCeEEEEecCcccCcccccCC
Confidence 58999999999999999999765422211111122222223332 22469999999963 2222
Q ss_pred hHHhh---ccCCcEEEEEEECCCc-ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcc
Q 019959 99 CRSIL---YSQINGVIFVHDLSQR-RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSG 174 (333)
Q Consensus 99 ~~~~~---~~~ad~vIlV~D~s~~-~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~ 174 (333)
+...+ +..+|++|+|+|+++. .+++.+..|.+++..... .....|+++|+||+|+.... .+
T Consensus 68 ~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~p~ivv~NK~Dl~~~~--~~--- 132 (170)
T cd01898 68 LGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNP----------ELLEKPRIVVLNKIDLLDEE--EL--- 132 (170)
T ss_pred chHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCc----------cccccccEEEEEchhcCCch--hh---
Confidence 23333 3469999999999999 899999999999877631 11368999999999997642 11
Q ss_pred cHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 175 NLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.+....+..... .+++++ +||+++.|++++++.+.+.
T Consensus 133 --~~~~~~~~~~~~------~~~~~~---------~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 133 --FELLKELLKELW------GKPVFP---------ISALTGEGLDELLRKLAEL 169 (170)
T ss_pred --HHHHHHHHhhCC------CCCEEE---------EecCCCCCHHHHHHHHHhh
Confidence 133444444331 246777 9999999999999888754
No 135
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.87 E-value=1.6e-21 Score=170.74 Aligned_cols=155 Identities=19% Similarity=0.239 Sum_probs=108.2
Q ss_pred EEEEECCCCCCHHHHHHHHHc--CCCCCCC------------CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK--GSSFSRP------------SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELW 88 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~ 88 (333)
+|+|+|.+|||||||+++|++ +.+...+ ..+.|.++..+...+. ...+.+.+|
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~-------------~~~~~~~l~ 70 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVT-------------YKDTKINIV 70 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEE-------------ECCEEEEEE
Confidence 899999999999999999997 4554332 2234555555554443 356789999
Q ss_pred eCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC
Q 019959 89 DISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 168 (333)
Q Consensus 89 Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~ 168 (333)
||+|+++|......+++.+|++|+|||+++.. +.....|+..+... ++|+++|+||+|+....
T Consensus 71 DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~~---------------~~p~iiv~NK~Dl~~~~- 133 (194)
T cd01891 71 DTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALEL---------------GLKPIVVINKIDRPDAR- 133 (194)
T ss_pred ECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHHc---------------CCCEEEEEECCCCCCCC-
Confidence 99999999999999999999999999998753 33344455554433 58999999999997532
Q ss_pred CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHH
Q 019959 169 TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKE 220 (333)
Q Consensus 169 r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~ 220 (333)
. ....+++.++...++...-...+++++ +||++|.|+.+
T Consensus 134 -~---~~~~~~~~~~~~~~~~~~~~~~~~iv~---------~Sa~~g~~~~~ 172 (194)
T cd01891 134 -P---EEVVDEVFDLFIELGATEEQLDFPVLY---------ASAKNGWASLN 172 (194)
T ss_pred -H---HHHHHHHHHHHHHhCCccccCccCEEE---------eehhccccccc
Confidence 1 111345555554443221111356777 99999988743
No 136
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.87 E-value=3.1e-21 Score=183.44 Aligned_cols=152 Identities=15% Similarity=0.143 Sum_probs=111.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc--------
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH-------- 93 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~-------- 93 (333)
++|+|+|++|||||||+|+|++..+.....+..+.++..+.+.+++ ...+.||||+|.
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~--------------~~~i~l~DT~G~~~~l~~~l 255 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD--------------GGEVLLTDTVGFIRDLPHEL 255 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC--------------CceEEEEecCcccccCCHHH
Confidence 6999999999999999999998876544444445666777777641 246899999996
Q ss_pred -hhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 94 -ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 94 -e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
+.|..... .+.++|++|+|+|++++.+++++..|...+..... .+.|+++|+||+|+...
T Consensus 256 ie~f~~tle-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~------------~~~piIlV~NK~Dl~~~------ 316 (351)
T TIGR03156 256 VAAFRATLE-EVREADLLLHVVDASDPDREEQIEAVEKVLEELGA------------EDIPQLLVYNKIDLLDE------ 316 (351)
T ss_pred HHHHHHHHH-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhcc------------CCCCEEEEEEeecCCCh------
Confidence 33444433 47899999999999999998888777766665532 26899999999999753
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+....+.. +. .++++ +||++|.|++++++.+.+.
T Consensus 317 -----~~v~~~~~--~~------~~~i~---------iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 317 -----PRIERLEE--GY------PEAVF---------VSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred -----HhHHHHHh--CC------CCEEE---------EEccCCCCHHHHHHHHHhh
Confidence 11111111 11 24566 9999999999988887653
No 137
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.87 E-value=1.1e-20 Score=156.76 Aligned_cols=157 Identities=20% Similarity=0.289 Sum_probs=125.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+++|.+|+|||||++++++..+...+.++.+.++....+.++ +..+.+.+||++|++++..++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~G~~~~~~~~ 67 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEED-------------GKTYKFNLLDTAGQEDYRAIR 67 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEEC-------------CEEEEEEEEECCCcccchHHH
Confidence 3799999999999999999999988878888888888877767665 445889999999999999999
Q ss_pred HhhccCCcEEEEEEECCCc-ccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 101 SILYSQINGVIFVHDLSQR-RTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~-~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
..++..+++++.++|+... .++.... .|...+..... .+.|+++|+||+|+.... + .+
T Consensus 68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~------------~~~p~ivv~nK~D~~~~~---~-----~~ 127 (161)
T TIGR00231 68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE------------SNVPIILVGNKIDLRDAK---L-----KT 127 (161)
T ss_pred HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc------------cCCcEEEEEEcccCCcch---h-----hH
Confidence 8889999999999999988 7777764 77777766642 268999999999997642 1 13
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKF 225 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l 225 (333)
.........+. .++++ +||++|.|++++++.+
T Consensus 128 ~~~~~~~~~~~------~~~~~---------~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 128 HVAFLFAKLNG------EPIIP---------LSAETGKNIDSAFKIV 159 (161)
T ss_pred HHHHHHhhccC------CceEE---------eecCCCCCHHHHHHHh
Confidence 33333333432 45777 9999999999988765
No 138
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.87 E-value=6.1e-21 Score=157.11 Aligned_cols=168 Identities=22% Similarity=0.345 Sum_probs=126.1
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
++++|+|+|..|+||||++++|.+.. .....||.| |..+.+.++ .+.+++||+.||..++..
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~---------------~~~L~iwDvGGq~~lr~~ 76 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYK---------------GYTLNIWDVGGQKTLRSY 76 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEec---------------ceEEEEEEcCCcchhHHH
Confidence 35899999999999999999999776 456677767 455666654 688999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
|..||..+|++|+|+|.+|+..++.....+.++..... ....|++|++||.|+... ++..+ +..
T Consensus 77 W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eer-----------laG~~~Lvlank~dl~~~----l~~~~-i~~ 140 (185)
T KOG0073|consen 77 WKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEER-----------LAGAPLLVLANKQDLPGA----LSLEE-ISK 140 (185)
T ss_pred HHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhh-----------hcCCceEEEEecCcCccc----cCHHH-HHH
Confidence 99999999999999999999988887665555443221 135799999999999843 22111 111
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
+..+..-.. .-.++++- |||.+|.++.+++++++..+..+++
T Consensus 141 ~~~L~~l~k----s~~~~l~~---------cs~~tge~l~~gidWL~~~l~~r~~ 182 (185)
T KOG0073|consen 141 ALDLEELAK----SHHWRLVK---------CSAVTGEDLLEGIDWLCDDLMSRLF 182 (185)
T ss_pred hhCHHHhcc----ccCceEEE---------EeccccccHHHHHHHHHHHHHHHhc
Confidence 122221111 11356777 9999999999999999999988654
No 139
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.86 E-value=1.4e-20 Score=159.69 Aligned_cols=161 Identities=18% Similarity=0.190 Sum_probs=109.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
.|+|+|++|||||||+++|+...+.....++...++....+.... .....+.+|||+|++.|..++..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~------------~~~~~~~iiDtpG~~~~~~~~~~ 69 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV------------LKIPGITFIDTPGHEAFTNMRAR 69 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc------------CCcceEEEEeCCCcHHHHHHHHH
Confidence 599999999999999999998887665444444444333333310 13567999999999999998888
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
++..+|++++|+|+++....+... .+..+... ++|+++|+||+|+..... +....
T Consensus 70 ~~~~~d~il~v~d~~~~~~~~~~~-~~~~~~~~---------------~~p~ivv~NK~Dl~~~~~---------~~~~~ 124 (168)
T cd01887 70 GASLTDIAILVVAADDGVMPQTIE-AIKLAKAA---------------NVPFIVALNKIDKPNANP---------ERVKN 124 (168)
T ss_pred HHhhcCEEEEEEECCCCccHHHHH-HHHHHHHc---------------CCCEEEEEEceecccccH---------HHHHH
Confidence 899999999999999854322221 22223222 589999999999874321 11111
Q ss_pred HHHHcCCC---CCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 183 WVEKQGLL---PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 183 ~~~~~~~~---~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
....+... .+...+++++ +||++|.|++++++.+.+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~---------~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 125 ELSELGLQGEDEWGGDVQIVP---------TSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred HHHHhhccccccccCcCcEEE---------eecccCCCHHHHHHHHHHhh
Confidence 11222111 1112356777 99999999999988887653
No 140
>PRK04213 GTP-binding protein; Provisional
Probab=99.86 E-value=8e-21 Score=166.89 Aligned_cols=157 Identities=22% Similarity=0.234 Sum_probs=105.9
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC------
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG------ 92 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G------ 92 (333)
...++|+|+|.+|||||||+++|++..+...+.++ .++....+.+. .+.+|||+|
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~--~t~~~~~~~~~-----------------~~~l~Dt~G~~~~~~ 67 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG--VTRKPNHYDWG-----------------DFILTDLPGFGFMSG 67 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc--eeeCceEEeec-----------------ceEEEeCCccccccc
Confidence 34579999999999999999999988775544443 34434444331 389999999
Q ss_pred -----chhhhhhHHhhcc----CCcEEEEEEECCCcccHHHHHHH------------HHHHHhcCCCCCCCCCCCCCCCC
Q 019959 93 -----HERYKDCRSILYS----QINGVIFVHDLSQRRTKTSLQKW------------AVEIATSGTFSAPLASGGPGGLP 151 (333)
Q Consensus 93 -----~e~~~~~~~~~~~----~ad~vIlV~D~s~~~S~~~l~~~------------~~~i~~~~~~~~~~~~~~~~~~~ 151 (333)
+++++..+..++. .++++++|+|.++...+. ..| +..+.. .+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~---------------~~ 130 (201)
T PRK04213 68 VPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRE---------------LG 130 (201)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccc--cccccCCCcHHHHHHHHHHHH---------------cC
Confidence 5777776666654 357888888876532210 122 222222 26
Q ss_pred CcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCc--CCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 152 VPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSE--ELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 152 ~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~--~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+|+++|+||+|+.... .+.+.++++.+++..... ..++++ |||++| |++++++.+.+.+
T Consensus 131 ~p~iiv~NK~Dl~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~---------~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 131 IPPIVAVNKMDKIKNR---------DEVLDEIAERLGLYPPWRQWQDIIAP---------ISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred CCeEEEEECccccCcH---------HHHHHHHHHHhcCCccccccCCcEEE---------EecccC-CHHHHHHHHHHhh
Confidence 8999999999997542 145677777777531111 124566 999999 9999999998765
Q ss_pred H
Q 019959 230 I 230 (333)
Q Consensus 230 ~ 230 (333)
.
T Consensus 192 ~ 192 (201)
T PRK04213 192 H 192 (201)
T ss_pred c
Confidence 3
No 141
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=6.2e-21 Score=160.81 Aligned_cols=168 Identities=21% Similarity=0.274 Sum_probs=132.7
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
-.+..+++|+++|-.++||||++++|..+++... .||+|..+ ..+.+. ++.+.+||..||++
T Consensus 12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnV--E~v~yk---------------n~~f~vWDvGGq~k 73 (181)
T KOG0070|consen 12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNV--ETVEYK---------------NISFTVWDVGGQEK 73 (181)
T ss_pred ccCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccce--eEEEEc---------------ceEEEEEecCCCcc
Confidence 3466789999999999999999999998887655 88988654 455553 67899999999999
Q ss_pred hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
++.++..|+...+++|||+|.+|++.+...+.-+..+..+.. ..+.|+++.+||.|+...- .
T Consensus 74 ~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~-----------l~~~~llv~aNKqD~~~al--s----- 135 (181)
T KOG0070|consen 74 LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPE-----------LRNAPLLVFANKQDLPGAL--S----- 135 (181)
T ss_pred cccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcc-----------cCCceEEEEechhhccccC--C-----
Confidence 999999999999999999999999999998887777766632 3489999999999998652 1
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+.++.+.+++........++. .|+|.+|.|+.++++.+...+.+
T Consensus 136 ----~~ei~~~L~l~~l~~~~w~iq--------~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 136 ----AAEITNKLGLHSLRSRNWHIQ--------STCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred ----HHHHHhHhhhhccCCCCcEEe--------eccccccccHHHHHHHHHHHHhc
Confidence 333344444332222233444 29999999999999999887754
No 142
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.85 E-value=2.1e-20 Score=156.94 Aligned_cols=147 Identities=18% Similarity=0.162 Sum_probs=107.6
Q ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh------h
Q 019959 26 VVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD------C 99 (333)
Q Consensus 26 ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~------~ 99 (333)
|+|++|||||||++++++..+.....++++.+.....+.++ ...+.+|||||++.+.. +
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~~~liDtpG~~~~~~~~~~~~~ 65 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG---------------GKEIEIVDLPGTYSLSPYSEDEKV 65 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC---------------CeEEEEEECCCccccCCCChhHHH
Confidence 58999999999999999886555555555666656666654 24689999999877653 3
Q ss_pred HHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 100 RSILYS--QINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 100 ~~~~~~--~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
...++. .+|++|+|+|+++.... ..|..++... ++|+++|+||+|+.... .+.
T Consensus 66 ~~~~~~~~~~d~vi~v~d~~~~~~~---~~~~~~~~~~---------------~~~~iiv~NK~Dl~~~~--~~~----- 120 (158)
T cd01879 66 ARDFLLGEKPDLIVNVVDATNLERN---LYLTLQLLEL---------------GLPVVVALNMIDEAEKR--GIK----- 120 (158)
T ss_pred HHHHhcCCCCcEEEEEeeCCcchhH---HHHHHHHHHc---------------CCCEEEEEehhhhcccc--cch-----
Confidence 455554 89999999999986543 3455555443 58999999999997642 222
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.....+++.++ +++++ +||++|.|++++++.+.+.
T Consensus 121 ~~~~~~~~~~~-------~~~~~---------iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 121 IDLDKLSELLG-------VPVVP---------TSARKGEGIDELKDAIAEL 155 (158)
T ss_pred hhHHHHHHhhC-------CCeEE---------EEccCCCCHHHHHHHHHHH
Confidence 33456666665 46777 9999999999998888764
No 143
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.85 E-value=1e-20 Score=152.03 Aligned_cols=114 Identities=33% Similarity=0.584 Sum_probs=86.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCC--CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSF--SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
||+|+|+.|||||||+++|++..+. ..+..+.+.++........ .....+.+||++|++.+...+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~d~~g~~~~~~~~ 67 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVD-------------GDRQSLQFWDFGGQEEFYSQH 67 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEET-------------TEEEEEEEEEESSSHCHHCTS
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEec-------------CCceEEEEEecCccceecccc
Confidence 7999999999999999999988776 2223333444544444443 344559999999999988877
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHH---HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQ---KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~---~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
..++..+|++|+|||++++.||+++. .|+..+.... .++|++|||||.|
T Consensus 68 ~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~-------------~~~piilv~nK~D 119 (119)
T PF08477_consen 68 QFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRD-------------KNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHS-------------SCSEEEEEEE-TC
T ss_pred cchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccC-------------CCCCEEEEEeccC
Confidence 77799999999999999999999874 4666666653 3699999999998
No 144
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.85 E-value=5.6e-21 Score=160.55 Aligned_cols=148 Identities=22% Similarity=0.247 Sum_probs=105.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh------
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER------ 95 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~------ 95 (333)
|+|+++|.+|||||||+|+|++........+..+.+.....+.+. ...+.++|+||.-.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~---------------~~~~~lvDlPG~ysl~~~s~ 65 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLG---------------DQQVELVDLPGIYSLSSKSE 65 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEET---------------TEEEEEEE----SSSSSSSH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEec---------------CceEEEEECCCcccCCCCCc
Confidence 689999999999999999999887655555665666666666664 36799999999311
Q ss_pred hhhhHHhh--ccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 96 YKDCRSIL--YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 96 ~~~~~~~~--~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
-......+ ..+.|++|+|.|+++.+.-.+ ...++.+. ++|+++|.||+|+....+..+.
T Consensus 66 ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~---l~~ql~e~---------------g~P~vvvlN~~D~a~~~g~~id- 126 (156)
T PF02421_consen 66 EERVARDYLLSEKPDLIIVVVDATNLERNLY---LTLQLLEL---------------GIPVVVVLNKMDEAERKGIEID- 126 (156)
T ss_dssp HHHHHHHHHHHTSSSEEEEEEEGGGHHHHHH---HHHHHHHT---------------TSSEEEEEETHHHHHHTTEEE--
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCCHHHHHH---HHHHHHHc---------------CCCEEEEEeCHHHHHHcCCEEC-
Confidence 12222233 368999999999998654333 34445454 6899999999999887554433
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKF 225 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l 225 (333)
...+.+.+| +|++. +||+++.|++++++.+
T Consensus 127 ------~~~Ls~~Lg-------~pvi~---------~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 127 ------AEKLSERLG-------VPVIP---------VSARTGEGIDELKDAI 156 (156)
T ss_dssp ------HHHHHHHHT-------S-EEE---------EBTTTTBTHHHHHHHH
T ss_pred ------HHHHHHHhC-------CCEEE---------EEeCCCcCHHHHHhhC
Confidence 677788888 67888 9999999999988764
No 145
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=5e-20 Score=173.90 Aligned_cols=163 Identities=13% Similarity=0.070 Sum_probs=112.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh----hhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER----YKD 98 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~----~~~ 98 (333)
.|+|||.+|||||||+++|++........+..+.+...-.+.+. ....+.|||+||.-+ ...
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~--------------~~~~~~i~D~PGli~ga~~~~g 225 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD--------------DYKSFVIADIPGLIEGASEGAG 225 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC--------------CCcEEEEEeCCCccCCCCcccc
Confidence 69999999999999999999764332222222333333344442 234589999999532 222
Q ss_pred hHHh---hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 99 CRSI---LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 99 ~~~~---~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
+... .+..++++|+|+|+++.++++.+..|..++..+.. ...+.|++||+||+|+.+.. .+.
T Consensus 226 Lg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~----------~L~~kp~IIV~NKiDL~~~~--~~~--- 290 (335)
T PRK12299 226 LGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSP----------ELADKPRILVLNKIDLLDEE--EER--- 290 (335)
T ss_pred HHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhh----------hcccCCeEEEEECcccCCch--hHH---
Confidence 3333 45579999999999998899999999999987631 12368999999999997542 111
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.+..+.+++..+ .++++ |||+++.|++++++.+.+.+.+
T Consensus 291 -~~~~~~~~~~~~-------~~i~~---------iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 291 -EKRAALELAALG-------GPVFL---------ISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred -HHHHHHHHHhcC-------CCEEE---------EEcCCCCCHHHHHHHHHHHHHh
Confidence 123444444333 45777 9999999999999999877654
No 146
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.85 E-value=6.7e-23 Score=171.87 Aligned_cols=176 Identities=26% Similarity=0.441 Sum_probs=149.0
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
..-.+|+.|+|+.|||||+++.+++...|...+..|+|.++..+.+.++ +...++++|||++||++|.
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wd------------d~t~vRlqLwdIagQerfg 89 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWD------------DKTIVRLQLWDIAGQERFG 89 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccC------------hHHHHHHHHhcchhhhhhc
Confidence 3456899999999999999999999999988999999999998888885 3667889999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.+...||+.+++.++|||+|+..+|+....|.+++..... -|.+..+|+|+..||||.......+. .
T Consensus 90 ~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~q--------Lpng~Pv~~vllankCd~e~~a~~~~-----~ 156 (229)
T KOG4423|consen 90 NMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQ--------LPNGTPVPCVLLANKCDQEKSAKNEA-----T 156 (229)
T ss_pred ceEEEEecCCcceEEEEEccccccccHHHHHHHhccCccc--------CCCCCcchheeccchhccChHhhhhh-----H
Confidence 9999999999999999999999999999999999865543 25567899999999999986532111 1
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
....++++++|+..|+ | +|+|.+.|++|+-..+++.++.+.
T Consensus 157 ~~~d~f~kengf~gwt------e---------ts~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 157 RQFDNFKKENGFEGWT------E---------TSAKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred HHHHHHHhccCcccee------e---------eccccccChhHHHHHHHHHHHhhc
Confidence 5577788889986544 4 999999999998888888776653
No 147
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.83 E-value=1.1e-19 Score=177.49 Aligned_cols=152 Identities=22% Similarity=0.267 Sum_probs=112.9
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
..+||+|+|++|||||||+|+|++... .....++.+.++....+.++ .+.+.+|||+|..++..
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~---------------g~~v~l~DTaG~~~~~~ 266 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN---------------GILIKLLDTAGIREHAD 266 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC---------------CEEEEEeeCCCcccchh
Confidence 346999999999999999999998653 22333444667767777664 35679999999755432
Q ss_pred h--------HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 99 C--------RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 99 ~--------~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
. ...+++.+|++|+|||++++.+++.. |+..+... +.|+++|+||+|+...+
T Consensus 267 ~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~~---------------~~piIlV~NK~Dl~~~~--- 326 (442)
T TIGR00450 267 FVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNKS---------------KKPFILVLNKIDLKINS--- 326 (442)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhhC---------------CCCEEEEEECccCCCcc---
Confidence 2 23568899999999999999988875 77766433 57999999999996431
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
...+++.++ +++++ +||++ .|++++++.+.+.+.+.
T Consensus 327 ---------~~~~~~~~~-------~~~~~---------vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 327 ---------LEFFVSSKV-------LNSSN---------LSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred ---------hhhhhhhcC-------CceEE---------EEEec-CCHHHHHHHHHHHHHHH
Confidence 233444444 45677 99998 59999999998877653
No 148
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=1.2e-19 Score=179.43 Aligned_cols=155 Identities=23% Similarity=0.216 Sum_probs=108.6
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh--
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER-- 95 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~-- 95 (333)
....+|+|||.+|||||||+|+|++..+ .....++++.+.....+.+. ...+.||||+|.+.
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~---------------~~~~~l~DT~G~~~~~ 100 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWN---------------GRRFTVVDTGGWEPDA 100 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEEC---------------CcEEEEEeCCCcCCcc
Confidence 3446999999999999999999998764 23444444555555555543 24588999999752
Q ss_pred ------hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC
Q 019959 96 ------YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT 169 (333)
Q Consensus 96 ------~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r 169 (333)
+......++..+|++|+|||+++..++.. ..|...+... ++|+++|+||+|+....
T Consensus 101 ~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~~---------------~~piilV~NK~Dl~~~~-- 162 (472)
T PRK03003 101 KGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRRS---------------GKPVILAANKVDDERGE-- 162 (472)
T ss_pred hhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc---------------CCCEEEEEECccCCccc--
Confidence 34445567889999999999999877653 3455555433 68999999999986431
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.+....+ .+++. . .++ |||++|.|++++++.+++.+.
T Consensus 163 -------~~~~~~~--~~g~~-----~-~~~---------iSA~~g~gi~eL~~~i~~~l~ 199 (472)
T PRK03003 163 -------ADAAALW--SLGLG-----E-PHP---------VSALHGRGVGDLLDAVLAALP 199 (472)
T ss_pred -------hhhHHHH--hcCCC-----C-eEE---------EEcCCCCCcHHHHHHHHhhcc
Confidence 0222222 33432 1 245 999999999999999887763
No 149
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=8.4e-20 Score=180.61 Aligned_cols=161 Identities=20% Similarity=0.163 Sum_probs=113.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc-----
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH----- 93 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~----- 93 (333)
..+||+|+|.+|||||||+|+|++..+ .....++.+.+.....+.++ + ..+.||||+|.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~-------------~--~~~~l~DTaG~~~~~~ 274 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELG-------------G--KTWRFVDTAGLRRRVK 274 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEEC-------------C--EEEEEEECCCcccccc
Confidence 458999999999999999999998764 23444555666666666654 2 34679999994
Q ss_pred -----hhhhhhH-HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc
Q 019959 94 -----ERYKDCR-SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE 167 (333)
Q Consensus 94 -----e~~~~~~-~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~ 167 (333)
+.|..+. ..+++.+|++|+|||+++..++..+. ++..+... +.|+|||+||+|+....
T Consensus 275 ~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~~---------------~~piIiV~NK~Dl~~~~ 338 (472)
T PRK03003 275 QASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIEA---------------GRALVLAFNKWDLVDED 338 (472)
T ss_pred ccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHHc---------------CCCEEEEEECcccCChh
Confidence 4444443 23578999999999999999988874 55555443 58999999999997532
Q ss_pred CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 168 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.+. ....++.+.+.... .+|+++ |||++|.|++++|+.+.+.+.
T Consensus 339 ~~~-------~~~~~i~~~l~~~~---~~~~~~---------~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 339 RRY-------YLEREIDRELAQVP---WAPRVN---------ISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred HHH-------HHHHHHHHhcccCC---CCCEEE---------EECCCCCCHHHHHHHHHHHHH
Confidence 110 11122222222211 256777 999999999999999987654
No 150
>PRK11058 GTPase HflX; Provisional
Probab=99.83 E-value=1.9e-19 Score=175.06 Aligned_cols=157 Identities=16% Similarity=0.121 Sum_probs=110.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh------
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER------ 95 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~------ 95 (333)
.+|+|+|++|||||||+|+|++..+.....+..+.+.....+.+.+ ...+.||||+|..+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~--------------~~~~~l~DTaG~~r~lp~~l 263 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD--------------VGETVLADTVGFIRHLPHDL 263 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC--------------CCeEEEEecCcccccCCHHH
Confidence 3899999999999999999998776544444455666666666641 12578999999633
Q ss_pred ---hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 96 ---YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 96 ---~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
|.... ..+..+|++|+|+|++++.+++.+..|...+..... .++|+++|+||+|+.....
T Consensus 264 ve~f~~tl-~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~------------~~~pvIiV~NKiDL~~~~~---- 326 (426)
T PRK11058 264 VAAFKATL-QETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDA------------HEIPTLLVMNKIDMLDDFE---- 326 (426)
T ss_pred HHHHHHHH-HHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhcc------------CCCCEEEEEEcccCCCchh----
Confidence 22222 236789999999999999988887665555544421 2689999999999974310
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCC-ccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELP-LTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p-~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.... ....+ ++ +++ +||++|.|++++++.+.+.+...
T Consensus 327 -----~~~~--~~~~~-------~~~~v~---------ISAktG~GIdeL~e~I~~~l~~~ 364 (426)
T PRK11058 327 -----PRID--RDEEN-------KPIRVW---------LSAQTGAGIPLLFQALTERLSGE 364 (426)
T ss_pred -----HHHH--HHhcC-------CCceEE---------EeCCCCCCHHHHHHHHHHHhhhc
Confidence 1111 11122 23 355 99999999999999998887543
No 151
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.82 E-value=5.4e-20 Score=150.11 Aligned_cols=170 Identities=19% Similarity=0.320 Sum_probs=139.2
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
...-.+||.++|++.+|||||+-.+.++.+.+++.++.|+.+..+.+.+. +..+.+.|||..|++++
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~-------------~t~IsfSIwdlgG~~~~ 82 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIR-------------GTDISFSIWDLGGQREF 82 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEec-------------ceEEEEEEEecCCcHhh
Confidence 44556899999999999999999999999999999999999999999887 68899999999999999
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
..+.+..+.++-+++|+||++.+.++..+..|+.+.+...+ .-+| |+||+|.|+.-.-.++ ..+.+
T Consensus 83 ~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk------------tAiP-ilvGTKyD~fi~lp~e-~Q~~I 148 (205)
T KOG1673|consen 83 INMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNK------------TAIP-ILVGTKYDLFIDLPPE-LQETI 148 (205)
T ss_pred hccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCC------------ccce-EEeccchHhhhcCCHH-HHHHH
Confidence 99999999999999999999999999999999999877753 2345 5789999975322111 12234
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
...++.+|+-.+. ++|. ||+..+.|+...|.-+...+
T Consensus 149 ~~qar~YAk~mnA-------sL~F---------~Sts~sINv~KIFK~vlAkl 185 (205)
T KOG1673|consen 149 SRQARKYAKVMNA-------SLFF---------CSTSHSINVQKIFKIVLAKL 185 (205)
T ss_pred HHHHHHHHHHhCC-------cEEE---------eeccccccHHHHHHHHHHHH
Confidence 4678888888775 3444 99999977776666555444
No 152
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.82 E-value=5.9e-20 Score=148.58 Aligned_cols=161 Identities=20% Similarity=0.367 Sum_probs=128.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
++.+.++|-.++|||||+|....+++.+...+|.|.. .+.++ ...+.+.+||.+|+.+|+.++
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn--mrk~t---------------kgnvtiklwD~gGq~rfrsmW 82 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN--MRKVT---------------KGNVTIKLWDLGGQPRFRSMW 82 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccce--eEEec---------------cCceEEEEEecCCCccHHHHH
Confidence 4689999999999999999999999999999998854 44443 357889999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..|+++++++++|+|+.+++.+...+.-++.+... |....+|++|.|||.|+...- ..
T Consensus 83 erycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k-----------~~l~gip~LVLGnK~d~~~AL-----------~~ 140 (186)
T KOG0075|consen 83 ERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDK-----------PSLTGIPLLVLGNKIDLPGAL-----------SK 140 (186)
T ss_pred HHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcc-----------hhhcCCcEEEecccccCcccc-----------cH
Confidence 99999999999999999998877666655555444 223589999999999998752 24
Q ss_pred HHHHHHcCCCCCCc-CCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSE-ELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 181 ~~~~~~~~~~~~~~-~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
..+..+.|+..... ++-.|- +|+|+..|++...+.+.++-
T Consensus 141 ~~li~rmgL~sitdREvcC~s---------iScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 141 IALIERMGLSSITDREVCCFS---------ISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred HHHHHHhCccccccceEEEEE---------EEEcCCccHHHHHHHHHHHh
Confidence 55667778754332 234455 99999999999888887653
No 153
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.82 E-value=3e-19 Score=168.39 Aligned_cols=161 Identities=15% Similarity=0.120 Sum_probs=111.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh----hh
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER----YK 97 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~----~~ 97 (333)
..|+|||.+|||||||+++|+.........+..+.......+.++ ....+.||||||..+ ..
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~--------------~~~~~~i~D~PGli~~a~~~~ 223 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD--------------DGRSFVIADIPGLIEGASEGA 223 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC--------------CceEEEEEeCCCcccCCcccc
Confidence 379999999999999999999765322211111223333344442 236689999999632 22
Q ss_pred hhHHhh---ccCCcEEEEEEECCCc---ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCcc
Q 019959 98 DCRSIL---YSQINGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRG 171 (333)
Q Consensus 98 ~~~~~~---~~~ad~vIlV~D~s~~---~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v 171 (333)
.+...| +..++++|+|+|+++. ++++.+..|..++..... ...+.|++||+||+|+.... .
T Consensus 224 gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~----------~l~~kp~IIV~NK~DL~~~~--~- 290 (329)
T TIGR02729 224 GLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP----------ELAEKPRIVVLNKIDLLDEE--E- 290 (329)
T ss_pred cHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhh----------hhccCCEEEEEeCccCCChH--H-
Confidence 333344 4469999999999987 678888889888876531 11368999999999997541 1
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
..+..+.+++.++ +++++ +||+++.|++++++.+.+.+
T Consensus 291 ----~~~~~~~l~~~~~-------~~vi~---------iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 291 ----LAELLKELKKALG-------KPVFP---------ISALTGEGLDELLYALAELL 328 (329)
T ss_pred ----HHHHHHHHHHHcC-------CcEEE---------EEccCCcCHHHHHHHHHHHh
Confidence 1244555555554 35777 99999999999998887653
No 154
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.82 E-value=1.1e-19 Score=154.15 Aligned_cols=141 Identities=18% Similarity=0.326 Sum_probs=99.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc-----hhhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH-----ERYK 97 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~-----e~~~ 97 (333)
+|+++|.+|||||||+|++.+.... ...+.+ +.+. .. .+|||||. +.+.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~~-------v~~~-------------~~----~~iDtpG~~~~~~~~~~ 56 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQA-------VEFN-------------DK----GDIDTPGEYFSHPRWYH 56 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--CccceE-------EEEC-------------CC----CcccCCccccCCHHHHH
Confidence 7999999999999999998754311 112222 2222 11 26999996 3333
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.+. ..+.++|++|+|+|+++.+++. ..|+..+. .+.|+++|+||+|+.+.+ .
T Consensus 57 ~~~-~~~~~ad~il~v~d~~~~~s~~--~~~~~~~~----------------~~~~ii~v~nK~Dl~~~~---------~ 108 (158)
T PRK15467 57 ALI-TTLQDVDMLIYVHGANDPESRL--PAGLLDIG----------------VSKRQIAVISKTDMPDAD---------V 108 (158)
T ss_pred HHH-HHHhcCCEEEEEEeCCCccccc--CHHHHhcc----------------CCCCeEEEEEccccCccc---------H
Confidence 333 3478999999999999988763 34555431 257899999999986431 2
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+.+.++++++++. .|+++ +||++|.|++++++.+.+.+.+
T Consensus 109 ~~~~~~~~~~~~~-----~p~~~---------~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 109 AATRKLLLETGFE-----EPIFE---------LNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred HHHHHHHHHcCCC-----CCEEE---------EECCCccCHHHHHHHHHHhchh
Confidence 5677888887753 47888 9999999999999888776543
No 155
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.82 E-value=3e-19 Score=156.05 Aligned_cols=173 Identities=16% Similarity=0.148 Sum_probs=104.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC----CCCCC-----CCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG----SSFSR-----PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~----~~~~~-----~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
++|+|+|+.|||||||+++|+.. .+... ...|++..+....+... ...+......+..+.+.+|||||
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~DtpG 77 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKP---KHLRELINPGEENLQITLVDCPG 77 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEeccc---ccccccccccccCceEEEEECCC
Confidence 58999999999999999999962 11111 12333433333333211 01111111234567899999999
Q ss_pred chhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 93 HERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 93 ~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
+..+..........+|++++|+|+++.........|. +.... +.|+++|+||+|+.....+...
T Consensus 78 ~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--------------~~~~iiv~NK~Dl~~~~~~~~~ 141 (192)
T cd01889 78 HASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--------------CKKLIVVLNKIDLIPEEERERK 141 (192)
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--------------CCCEEEEEECcccCCHHHHHHH
Confidence 9766444434456789999999999865544433332 11221 4699999999999753211111
Q ss_pred cccHHHHHHHHH-HHc---CCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWV-EKQ---GLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 173 ~~~~~~~~~~~~-~~~---~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.++..+.. ..+ +. ..+++++ +||++|.|++++++.+.+.+.
T Consensus 142 ----~~~~~~~l~~~~~~~~~----~~~~vi~---------iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 142 ----IEKMKKKLQKTLEKTRF----KNSPIIP---------VSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred ----HHHHHHHHHHHHHhcCc----CCCCEEE---------EeccCCCCHHHHHHHHHhccc
Confidence 12222211 111 21 1356777 999999999998888776543
No 156
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2.3e-20 Score=157.18 Aligned_cols=163 Identities=23% Similarity=0.350 Sum_probs=135.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+|++++|+.|.|||+++++.+.++|...+.+|+|+....-...-+ ...+++..|||+|+|.+..+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn-------------~g~irf~~wdtagqEk~ggl 75 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTN-------------RGQIRFNVWDTAGQEKKGGL 75 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecc-------------cCcEEEEeeecccceeeccc
Confidence 36799999999999999999999999999999999998866555433 33699999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
...+|-++.+.|++||++.+-++.++..|...+.+.+. ++||+++|||.|..... +. ..
T Consensus 76 rdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~-------------NiPiv~cGNKvDi~~r~---~k-----~k 134 (216)
T KOG0096|consen 76 RDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRE-------------NIPIVLCGNKVDIKARK---VK-----AK 134 (216)
T ss_pred ccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhc-------------CCCeeeeccceeccccc---cc-----cc
Confidence 99999999999999999999999999999999999875 89999999999987642 11 00
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.-.+-++. +|.|+| +||+++.|.+..|-.+.+.+.-.
T Consensus 135 ~v~~~rkk-------nl~y~~---------iSaksn~NfekPFl~LarKl~G~ 171 (216)
T KOG0096|consen 135 PVSFHRKK-------NLQYYE---------ISAKSNYNFERPFLWLARKLTGD 171 (216)
T ss_pred cceeeecc-------cceeEE---------eecccccccccchHHHhhhhcCC
Confidence 11111122 356777 99999999999999988776543
No 157
>PRK15494 era GTPase Era; Provisional
Probab=99.81 E-value=5.3e-19 Score=167.72 Aligned_cols=155 Identities=15% Similarity=0.142 Sum_probs=101.9
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh-h
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFS-RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER-Y 96 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~-~ 96 (333)
.+.++|+|+|++|||||||+|+|++..+.. ...+..+.+.....+..+ ...+.||||||..+ +
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~---------------~~qi~~~DTpG~~~~~ 114 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLK---------------DTQVILYDTPGIFEPK 114 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeC---------------CeEEEEEECCCcCCCc
Confidence 345799999999999999999999887642 111111223333444443 34689999999742 2
Q ss_pred hhhH-------HhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC
Q 019959 97 KDCR-------SILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 168 (333)
Q Consensus 97 ~~~~-------~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~ 168 (333)
..+. ...+..+|++|+|+|.++ +|..+. .|+..+... +.|+++|+||+|+....
T Consensus 115 ~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---------------~~p~IlViNKiDl~~~~- 176 (339)
T PRK15494 115 GSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---------------NIVPIFLLNKIDIESKY- 176 (339)
T ss_pred ccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---------------CCCEEEEEEhhcCcccc-
Confidence 2221 134779999999999765 455553 455555544 45778899999996431
Q ss_pred CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 169 TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 169 r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
..++.+++...+. ..++++ +||++|.|++++++.+.+.
T Consensus 177 --------~~~~~~~l~~~~~-----~~~i~~---------iSAktg~gv~eL~~~L~~~ 214 (339)
T PRK15494 177 --------LNDIKAFLTENHP-----DSLLFP---------ISALSGKNIDGLLEYITSK 214 (339)
T ss_pred --------HHHHHHHHHhcCC-----CcEEEE---------EeccCccCHHHHHHHHHHh
Confidence 2445555554331 134666 9999999988888777654
No 158
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.81 E-value=6.9e-19 Score=144.18 Aligned_cols=155 Identities=28% Similarity=0.491 Sum_probs=113.3
Q ss_pred EECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhc
Q 019959 26 VVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILY 104 (333)
Q Consensus 26 ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~ 104 (333)
|+|.+|+|||||++++++... .....+|. .++........ .....+.+||++|+..+......++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~-------------~~~~~~~l~D~~g~~~~~~~~~~~~ 66 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVD-------------GKKVKLQIWDTAGQERFRSLRRLYY 66 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEEC-------------CEEEEEEEEecCChHHHHhHHHHHh
Confidence 589999999999999998876 45555565 66666666543 4567899999999998888878889
Q ss_pred cCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHH
Q 019959 105 SQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWV 184 (333)
Q Consensus 105 ~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~ 184 (333)
..+|++|+|+|+++..++..+..|......... ...+|+++|+||+|+........ .......
T Consensus 67 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ivv~nk~D~~~~~~~~~------~~~~~~~ 129 (157)
T cd00882 67 RGADGIILVYDVTDRESFENVKEWLLLILINKE-----------GENIPIILVGNKIDLPEERVVSE------EELAEQL 129 (157)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhc-----------cCCCcEEEEEeccccccccchHH------HHHHHHH
Confidence 999999999999999999988877322221111 24799999999999986532110 1101122
Q ss_pred HHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 185 EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 185 ~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
.... .+++++ +||+++.|++++++.+.
T Consensus 130 ~~~~------~~~~~~---------~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 130 AKEL------GVPYFE---------TSAKTGENVEELFEELA 156 (157)
T ss_pred Hhhc------CCcEEE---------EecCCCCChHHHHHHHh
Confidence 2222 256777 99999999999888765
No 159
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.81 E-value=3.4e-19 Score=153.95 Aligned_cols=156 Identities=19% Similarity=0.263 Sum_probs=103.9
Q ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 14 ~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
.+.++...++|+|+|++|||||||+++|++..+...+..+.+.+.....+..+ + .+.+|||+|.
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-------------~---~~~liDtpG~ 74 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-------------D---GFRLVDLPGY 74 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-------------C---cEEEEeCCCC
Confidence 35566778899999999999999999999886555555566655544444332 1 4899999994
Q ss_pred ----------hhhhhhHHhhcc---CCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 94 ----------ERYKDCRSILYS---QINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 94 ----------e~~~~~~~~~~~---~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
+.+..+...+++ .+|++|+|+|++++-+..... ++..+... ++|+++|+||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~~---------------~~pviiv~nK 138 (179)
T TIGR03598 75 GYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRER---------------GIPVLIVLTK 138 (179)
T ss_pred ccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHHc---------------CCCEEEEEEC
Confidence 334444445555 368999999999876655542 23333333 5899999999
Q ss_pred cCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHH
Q 019959 161 ADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDK 219 (333)
Q Consensus 161 ~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~ 219 (333)
+|+........ ..+++++++...+. ..++++ +||++|.|++
T Consensus 139 ~D~~~~~~~~~----~~~~i~~~l~~~~~-----~~~v~~---------~Sa~~g~gi~ 179 (179)
T TIGR03598 139 ADKLKKSELNK----QLKKIKKALKKDAD-----DPSVQL---------FSSLKKTGID 179 (179)
T ss_pred cccCCHHHHHH----HHHHHHHHHhhccC-----CCceEE---------EECCCCCCCC
Confidence 99975421111 12444444444321 235676 9999998873
No 160
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.81 E-value=5.7e-19 Score=162.61 Aligned_cols=151 Identities=17% Similarity=0.130 Sum_probs=100.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCC--CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh----
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSF--SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY---- 96 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~---- 96 (333)
+|+|+|.+|||||||+|+|++..+. .....|.. +. .+.+... ....+.+|||||....
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr-~~-i~~i~~~--------------~~~qii~vDTPG~~~~~~~l 65 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTR-NR-ISGIHTT--------------GASQIIFIDTPGFHEKKHSL 65 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCccc-Cc-EEEEEEc--------------CCcEEEEEECcCCCCCcchH
Confidence 7999999999999999999988653 22222322 21 1222221 2346899999996432
Q ss_pred ----hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 97 ----KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 97 ----~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
......++..+|++++|+|+++..+.+ ..++..+... +.|+++|+||+|+.... .
T Consensus 66 ~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~~---------------~~p~ilV~NK~Dl~~~~--~-- 124 (270)
T TIGR00436 66 NRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQNL---------------KRPVVLTRNKLDNKFKD--K-- 124 (270)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHhc---------------CCCEEEEEECeeCCCHH--H--
Confidence 111234578999999999999987765 3455555443 58999999999997431 1
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+.+....++...++ .++++ +||++|.|++++++.+.+.
T Consensus 125 ---~~~~~~~~~~~~~~------~~v~~---------iSA~~g~gi~~L~~~l~~~ 162 (270)
T TIGR00436 125 ---LLPLIDKYAILEDF------KDIVP---------ISALTGDNTSFLAAFIEVH 162 (270)
T ss_pred ---HHHHHHHHHhhcCC------CceEE---------EecCCCCCHHHHHHHHHHh
Confidence 12334444444332 14666 9999999999888877654
No 161
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.81 E-value=8.4e-19 Score=146.68 Aligned_cols=146 Identities=18% Similarity=0.181 Sum_probs=98.1
Q ss_pred EEECCCCCCHHHHHHHHHcCCC--CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh----
Q 019959 25 LVVGDSGVGKTSLVNLIVKGSS--FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD---- 98 (333)
Q Consensus 25 ~ivG~~~vGKSSLl~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~---- 98 (333)
+++|.+|||||||+++|++... ..... ..+.+.......++ ...+.+|||||...+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~-~~t~~~~~~~~~~~---------------~~~~~i~DtpG~~~~~~~~~~ 64 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTP-GVTRDRIYGEAEWG---------------GREFILIDTGGIEPDDEGISK 64 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCC-CceeCceeEEEEEC---------------CeEEEEEECCCCCCchhHHHH
Confidence 5899999999999999997642 22222 22333333344332 36799999999877543
Q ss_pred ----hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcc
Q 019959 99 ----CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSG 174 (333)
Q Consensus 99 ----~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~ 174 (333)
.....+..+|++|+|+|.++..+.... .+...+... +.|+++|+||+|+....
T Consensus 65 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~---------------~~piiiv~nK~D~~~~~------- 121 (157)
T cd01894 65 EIREQAELAIEEADVILFVVDGREGLTPADE-EIAKYLRKS---------------KKPVILVVNKVDNIKEE------- 121 (157)
T ss_pred HHHHHHHHHHHhCCEEEEEEeccccCCccHH-HHHHHHHhc---------------CCCEEEEEECcccCChH-------
Confidence 333467889999999999887655443 122223332 58999999999998652
Q ss_pred cHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 175 NLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.. ......+++. ++++ +||++|.|++++++.+++.
T Consensus 122 ---~~-~~~~~~~~~~------~~~~---------~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 122 ---DE-AAEFYSLGFG------EPIP---------ISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred ---HH-HHHHHhcCCC------CeEE---------EecccCCCHHHHHHHHHhh
Confidence 11 2222334431 4566 9999999999999988764
No 162
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.81 E-value=7.7e-19 Score=151.58 Aligned_cols=163 Identities=20% Similarity=0.210 Sum_probs=108.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcc----------------cceeEEEEEEEeCCCCCCCCccCCCCCceEEEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQT----------------IGCTVGVKHITYGSSGSSSNSIKGDSERDFFVE 86 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t----------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 86 (333)
+|+|+|.+|||||||+++|++.........+ +..+.....+.+ ....+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 65 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW---------------PDRRVN 65 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee---------------CCEEEE
Confidence 4899999999999999999987665433211 111222222222 246799
Q ss_pred EEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 87 LWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 87 i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
+|||+|+..+...+..++..+|++++|+|+++..+.... .++..+... +.|+++|+||+|+...
T Consensus 66 liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~---------------~~~i~iv~nK~D~~~~ 129 (189)
T cd00881 66 FIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTR-EHLRIAREG---------------GLPIIVAINKIDRVGE 129 (189)
T ss_pred EEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHHC---------------CCCeEEEEECCCCcch
Confidence 999999999988888889999999999999987655433 344444432 6899999999999863
Q ss_pred cCCccCcccHHHHHHHHHHHcCCC-------CCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGLL-------PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~~-------~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
..... ..+.+++..+..+.. ......++++ +||++|.|++++++.+.+.+
T Consensus 130 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---------~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 130 EDLEE----VLREIKELLGLIGFISTKEEGTRNGLLVPIVP---------GSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcHHH----HHHHHHHHHccccccchhhhhcccCCcceEEE---------EecccCcCHHHHHHHHHhhC
Confidence 21111 113333333333320 0111356666 99999999988888777653
No 163
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.80 E-value=1.1e-18 Score=176.14 Aligned_cols=162 Identities=15% Similarity=0.190 Sum_probs=117.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC-------CCCCCCc------ccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEe
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS-------SFSRPSQ------TIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWD 89 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~-------~~~~~~~------t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~D 89 (333)
+|+|+|..++|||||+++|+... +...+.. +.|.++....+.+.- ...++..+.++|||
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~--------~~~~g~~~~l~liD 76 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNY--------KAKDGETYVLNLID 76 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEE--------EcCCCCEEEEEEEE
Confidence 79999999999999999998642 2222222 235666554443310 00125678999999
Q ss_pred CCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC
Q 019959 90 ISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT 169 (333)
Q Consensus 90 t~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r 169 (333)
|||+++|......++..+|++|+|||+++..+++.+..|...+. . ++|+++|+||+|+.....
T Consensus 77 TPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-~---------------~ipiIiViNKiDl~~~~~- 139 (595)
T TIGR01393 77 TPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-N---------------DLEIIPVINKIDLPSADP- 139 (595)
T ss_pred CCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-c---------------CCCEEEEEECcCCCccCH-
Confidence 99999999999999999999999999999888887777765442 2 579999999999964310
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+...++++.+++.. ..+++ +||++|.|++++++.+.+.+
T Consensus 140 -------~~~~~el~~~lg~~~----~~vi~---------vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 140 -------ERVKKEIEEVIGLDA----SEAIL---------ASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred -------HHHHHHHHHHhCCCc----ceEEE---------eeccCCCCHHHHHHHHHHhC
Confidence 133456666666421 13556 99999999999888887654
No 164
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=2.5e-18 Score=166.43 Aligned_cols=159 Identities=17% Similarity=0.146 Sum_probs=111.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch----hhhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE----RYKD 98 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e----~~~~ 98 (333)
.|+|||.+|||||||++++++........+..+.+...-.+.++ ....+.|||+||.. ....
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~--------------~~~~~~laD~PGliega~~~~g 225 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD--------------DGRSFVMADIPGLIEGASEGVG 225 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe--------------CCceEEEEECCCCcccccccch
Confidence 79999999999999999999765322211221222222333332 13568999999953 2223
Q ss_pred hHHhh---ccCCcEEEEEEECCCc---ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 99 CRSIL---YSQINGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 99 ~~~~~---~~~ad~vIlV~D~s~~---~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
+...| +..++++|+|+|+++. +.++++..|..++..+.. ...+.|++||+||+|+...
T Consensus 226 Lg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~----------~L~~kP~IVV~NK~DL~~~------ 289 (424)
T PRK12297 226 LGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP----------RLLERPQIVVANKMDLPEA------ 289 (424)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhch----------hccCCcEEEEEeCCCCcCC------
Confidence 43444 4469999999999865 678888889888877631 1236899999999998532
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.+..+.+++.++ .++++ +||+++.|++++++.+.+.+..
T Consensus 290 ----~e~l~~l~~~l~-------~~i~~---------iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 290 ----EENLEEFKEKLG-------PKVFP---------ISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred ----HHHHHHHHHHhC-------CcEEE---------EeCCCCCCHHHHHHHHHHHHHh
Confidence 144566666665 35666 9999999999999999876644
No 165
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.80 E-value=8.7e-19 Score=172.04 Aligned_cols=147 Identities=22% Similarity=0.228 Sum_probs=108.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
.++|+|+|++|||||||+|+|++... .....+..+.++....+.++ ...+.+|||+|.+++...
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~---------------g~~i~l~DT~G~~~~~~~ 279 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD---------------GIPLRLIDTAGIRETDDE 279 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC---------------CeEEEEEeCCCCCCCccH
Confidence 37999999999999999999998764 23344444566666666664 356899999997654332
Q ss_pred --------HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCcc
Q 019959 100 --------RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRG 171 (333)
Q Consensus 100 --------~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v 171 (333)
...++..+|++|+|||++++.+++....|.. . .+.|+++|+||+|+....
T Consensus 280 ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~----~--------------~~~piiiV~NK~DL~~~~---- 337 (449)
T PRK05291 280 VEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE----L--------------KDKPVIVVLNKADLTGEI---- 337 (449)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh----c--------------CCCCcEEEEEhhhccccc----
Confidence 2235789999999999999988887655543 1 268999999999997541
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
. .. ... ..++++ +||++|.|++++++.+.+.+.
T Consensus 338 ------~-~~---~~~-------~~~~i~---------iSAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 338 ------D-LE---EEN-------GKPVIR---------ISAKTGEGIDELREAIKELAF 370 (449)
T ss_pred ------h-hh---hcc-------CCceEE---------EEeeCCCCHHHHHHHHHHHHh
Confidence 1 11 111 245666 999999999999999887764
No 166
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.80 E-value=2.1e-18 Score=150.52 Aligned_cols=164 Identities=19% Similarity=0.230 Sum_probs=107.9
Q ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 14 ~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
++.+....++|+|+|.+|||||||+++|++..+.....++.+.+........ ...+.||||+|.
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----------------~~~l~l~DtpG~ 80 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV----------------NDKLRLVDLPGY 80 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec----------------CCeEEEeCCCCC
Confidence 3445567789999999999999999999988766666666666544433322 246999999993
Q ss_pred ----------hhhhhhHHhhccCC---cEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 94 ----------ERYKDCRSILYSQI---NGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 94 ----------e~~~~~~~~~~~~a---d~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
+++..+...++..+ +++++|+|.+++.+.... .+...+... ++|+++|+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~~---------------~~~~iiv~nK 144 (196)
T PRK00454 81 GYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKEY---------------GIPVLIVLTK 144 (196)
T ss_pred CCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHHc---------------CCcEEEEEEC
Confidence 44555555556544 688899998876554432 112222222 5799999999
Q ss_pred cCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 161 ADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 161 ~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+|+.....+... .+.+..+.... .+++++ +||+++.|++++++.+.+.+
T Consensus 145 ~Dl~~~~~~~~~----~~~i~~~l~~~-------~~~~~~---------~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 145 ADKLKKGERKKQ----LKKVRKALKFG-------DDEVIL---------FSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred cccCCHHHHHHH----HHHHHHHHHhc-------CCceEE---------EEcCCCCCHHHHHHHHHHHh
Confidence 999754211110 12222222222 145777 99999999999888876554
No 167
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.80 E-value=2.3e-18 Score=143.85 Aligned_cols=146 Identities=22% Similarity=0.246 Sum_probs=102.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh--
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD-- 98 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~-- 98 (333)
++|+++|++|+|||||++++++..+. ....+....++....+.+. ...+.+|||+|..++..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~DtpG~~~~~~~~ 66 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG---------------GIPVRLIDTAGIRETEDEI 66 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC---------------CEEEEEEECCCcCCCcchH
Confidence 58999999999999999999977642 1222333334434444332 35689999999655432
Q ss_pred ------hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 99 ------CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 99 ------~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
....++..+|++++|+|++++.+......|.. . .+.|+++|+||+|+.....
T Consensus 67 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~----~--------------~~~~vi~v~nK~D~~~~~~---- 124 (157)
T cd04164 67 EKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL----P--------------ADKPIIVVLNKSDLLPDSE---- 124 (157)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh----h--------------cCCCEEEEEEchhcCCccc----
Confidence 12245779999999999999888877655543 1 2689999999999986521
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
. ..... ..++++ +||+++.|++++++.+.+.+
T Consensus 125 -------~--~~~~~-------~~~~~~---------~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 125 -------L--LSLLA-------GKPIIA---------ISAKTGEGLDELKEALLELA 156 (157)
T ss_pred -------c--ccccC-------CCceEE---------EECCCCCCHHHHHHHHHHhh
Confidence 1 11111 246777 99999999999988877643
No 168
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.79 E-value=1.3e-18 Score=148.56 Aligned_cols=160 Identities=16% Similarity=0.157 Sum_probs=100.6
Q ss_pred EECCCCCCHHHHHHHHHcCCCC-CC-CCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh----hhhh
Q 019959 26 VVGDSGVGKTSLVNLIVKGSSF-SR-PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER----YKDC 99 (333)
Q Consensus 26 ivG~~~vGKSSLl~~l~~~~~~-~~-~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~----~~~~ 99 (333)
|+|++|||||||+++|++..+. .. ...|..... ..+.++ ....+.||||||... ...+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~--~~~~~~--------------~~~~~~i~DtpG~~~~~~~~~~~ 64 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNL--GVVEVP--------------DGARIQVADIPGLIEGASEGRGL 64 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcc--eEEEcC--------------CCCeEEEEeccccchhhhcCCCc
Confidence 5899999999999999988642 12 222333222 223332 145689999999632 1112
Q ss_pred ---HHhhccCCcEEEEEEECCCc------ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 100 ---RSILYSQINGVIFVHDLSQR------RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 100 ---~~~~~~~ad~vIlV~D~s~~------~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
....+..+|++++|+|+++. .+++.+..|..++....... + -....+.|+++|+||+|+.... .
T Consensus 65 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~p~ivv~NK~Dl~~~~--~ 137 (176)
T cd01881 65 GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLET--I---LGLLTAKPVIYVLNKIDLDDAE--E 137 (176)
T ss_pred cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhh--H---HHHHhhCCeEEEEEchhcCchh--H
Confidence 12346789999999999998 57888888888886542100 0 0000268999999999997542 1
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
... .......... ..++++ +||+++.|++++++.+++.
T Consensus 138 ~~~----~~~~~~~~~~-------~~~~~~---------~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 138 LEE----ELVRELALEE-------GAEVVP---------ISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred HHH----HHHHHHhcCC-------CCCEEE---------EehhhhcCHHHHHHHHHhh
Confidence 110 0011111111 245666 9999999999988887653
No 169
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=2.1e-18 Score=138.53 Aligned_cols=163 Identities=20% Similarity=0.308 Sum_probs=125.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
.++++|+.+|-.++||||++..|+-++. ....+|+| |..+.+++ +++++++||+.|+++.+.
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvG--FnvetVty---------------kN~kfNvwdvGGqd~iRp 76 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVG--FNVETVTY---------------KNVKFNVWDVGGQDKIRP 76 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-cccccccc--eeEEEEEe---------------eeeEEeeeeccCchhhhH
Confidence 4579999999999999999999996654 34566767 45566666 468899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
+++.||.+..++|||.|..+.+..++.+.-+..+.... ...+.|++|.+||.|+.+. +.
T Consensus 77 lWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~-----------em~~~~~LvlANkQDlp~A--~~-------- 135 (180)
T KOG0071|consen 77 LWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDR-----------EMRDAIILILANKQDLPDA--MK-------- 135 (180)
T ss_pred HHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCH-----------hhhcceEEEEecCcccccc--cC--------
Confidence 99999999999999999999988888877777766553 3458999999999999876 22
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+++.+.+++........++. .+||.+|.|+.+.+.++.+.+
T Consensus 136 -pqei~d~leLe~~r~~~W~vq--------p~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 136 -PQEIQDKLELERIRDRNWYVQ--------PSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred -HHHHHHHhccccccCCccEee--------ccccccchhHHHHHHHHHhhc
Confidence 223333344433222222322 399999999999998887654
No 170
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.79 E-value=6.1e-18 Score=143.36 Aligned_cols=158 Identities=19% Similarity=0.172 Sum_probs=101.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh---
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY--- 96 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~--- 96 (333)
.++|+++|++|+|||||+++|++..+. ....+....+.....+..+ ...+.+|||+|....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~iiDtpG~~~~~~~ 66 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD---------------GKKYTLIDTAGIRRKGKV 66 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC---------------CeeEEEEECCCCccccch
Confidence 479999999999999999999987532 2222222333333344433 234789999996432
Q ss_pred -------hhh-HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC
Q 019959 97 -------KDC-RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 168 (333)
Q Consensus 97 -------~~~-~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~ 168 (333)
... ...++..+|++|+|+|++++.+..... ++..+... +.|+++|+||+|+....
T Consensus 67 ~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~~---------------~~~~iiv~nK~Dl~~~~- 129 (174)
T cd01895 67 EEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLR-IAGLILEE---------------GKALVIVVNKWDLVEKD- 129 (174)
T ss_pred hccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHhc---------------CCCEEEEEeccccCCcc-
Confidence 111 123467899999999999988866543 33333332 57999999999997652
Q ss_pred CccCcccHHHH-HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 169 TRGSSGNLVDA-ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 169 r~v~~~~~~~~-~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
... .+. ...+.+.++.. ..+++++ +||+++.|++++++.+.+
T Consensus 130 -~~~----~~~~~~~~~~~~~~~---~~~~~~~---------~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 130 -SKT----MKEFKKEIRRKLPFL---DYAPIVF---------ISALTGQGVDKLFDAIDE 172 (174)
T ss_pred -HHH----HHHHHHHHHhhcccc---cCCceEE---------EeccCCCCHHHHHHHHHH
Confidence 111 122 22232333311 1256777 999999999998887764
No 171
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.79 E-value=4.6e-18 Score=171.12 Aligned_cols=162 Identities=20% Similarity=0.213 Sum_probs=116.4
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
..+..+|+|+|..++|||||+++|.+..+......+++.++....+.+++ ...+.||||||++.|.
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~--------------~~~i~~iDTPGhe~F~ 149 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENED--------------GKMITFLDTPGHEAFT 149 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECC--------------CcEEEEEECCCCcchh
Confidence 34556999999999999999999998887766655555555555555531 1268999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++...+..+|++|+|||+++...-+....| ..+.. .++|+++++||+|+.... .
T Consensus 150 ~~r~rga~~aDiaILVVda~dgv~~qT~e~i-~~~~~---------------~~vPiIVviNKiDl~~~~---------~ 204 (587)
T TIGR00487 150 SMRARGAKVTDIVVLVVAADDGVMPQTIEAI-SHAKA---------------ANVPIIVAINKIDKPEAN---------P 204 (587)
T ss_pred hHHHhhhccCCEEEEEEECCCCCCHhHHHHH-HHHHH---------------cCCCEEEEEECcccccCC---------H
Confidence 9998889999999999999875433333222 22222 268999999999996432 2
Q ss_pred HHHHHHHHHcCCCC--CCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLP--SSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 178 ~~~~~~~~~~~~~~--~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
+.+.+.+..+++.. |..++++++ +||++|.|++++++.+..
T Consensus 205 e~v~~~L~~~g~~~~~~~~~~~~v~---------iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 205 DRVKQELSEYGLVPEDWGGDTIFVP---------VSALTGDGIDELLDMILL 247 (587)
T ss_pred HHHHHHHHHhhhhHHhcCCCceEEE---------EECCCCCChHHHHHhhhh
Confidence 44444444444321 111356777 999999999999988763
No 172
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.78 E-value=6.9e-18 Score=165.18 Aligned_cols=163 Identities=18% Similarity=0.153 Sum_probs=107.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
...++|+|+|.+|||||||+++|++.... ....+..+.+.....+.++ + ..+.+|||+|..++.
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~-------------~--~~~~liDT~G~~~~~ 234 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERN-------------G--KKYLLIDTAGIRRKG 234 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEEC-------------C--cEEEEEECCCccccc
Confidence 34589999999999999999999976532 2223333333333444443 2 368999999964432
Q ss_pred h----------hH-HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 98 D----------CR-SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 98 ~----------~~-~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
. .. ..+++.+|++|+|+|+++..+..... ++..+... +.|+++|+||+|+.+.
T Consensus 235 ~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~~---------------~~~iiiv~NK~Dl~~~ 298 (429)
T TIGR03594 235 KVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILEA---------------GKALVIVVNKWDLVKD 298 (429)
T ss_pred cchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHHc---------------CCcEEEEEECcccCCC
Confidence 1 11 23678999999999999988877653 44444443 5799999999999722
Q ss_pred cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
. ... .+....+...+... ..+|+++ +||++|.|++++++.+.+...
T Consensus 299 ~---~~~---~~~~~~~~~~~~~~---~~~~vi~---------~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 299 E---KTR---EEFKKELRRKLPFL---DFAPIVF---------ISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred H---HHH---HHHHHHHHHhcccC---CCCceEE---------EeCCCCCCHHHHHHHHHHHHH
Confidence 1 000 11122222223221 2357777 999999999999988887543
No 173
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.78 E-value=3e-18 Score=172.92 Aligned_cols=158 Identities=18% Similarity=0.212 Sum_probs=115.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc---CCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK---GSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
+.|+++|..++|||||+++|++ +.+..+...+++.++....+.++ .+.+.|||+||+++|..
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~---------------~~~v~~iDtPGhe~f~~ 65 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLP---------------DYRLGFIDVPGHEKFIS 65 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeC---------------CEEEEEEECCCHHHHHH
Confidence 4689999999999999999996 34444555666777766666654 27799999999999988
Q ss_pred hHHhhccCCcEEEEEEECCCc---ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcCCCCccCCccCcc
Q 019959 99 CRSILYSQINGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSG 174 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~---~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~Dl~~~~~r~v~~~ 174 (333)
.....+.++|++|+|+|+++. .+++++. .+... ++| ++||+||+|+.+.. .+.
T Consensus 66 ~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~----il~~l---------------gi~~iIVVlNK~Dlv~~~--~~~-- 122 (581)
T TIGR00475 66 NAIAGGGGIDAALLVVDADEGVMTQTGEHLA----VLDLL---------------GIPHTIVVITKADRVNEE--EIK-- 122 (581)
T ss_pred HHHhhhccCCEEEEEEECCCCCcHHHHHHHH----HHHHc---------------CCCeEEEEEECCCCCCHH--HHH--
Confidence 888889999999999999984 4444432 22222 567 99999999997642 110
Q ss_pred cHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 175 NLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+.+++.++++..++. .++|+++ +||++|.|++++++.+...+
T Consensus 123 ~~~~ei~~~l~~~~~~---~~~~ii~---------vSA~tG~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 123 RTEMFMKQILNSYIFL---KNAKIFK---------TSAKTGQGIGELKKELKNLL 165 (581)
T ss_pred HHHHHHHHHHHHhCCC---CCCcEEE---------EeCCCCCCchhHHHHHHHHH
Confidence 1124556666655432 1367777 99999999999988776544
No 174
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.78 E-value=8.9e-18 Score=136.90 Aligned_cols=161 Identities=20% Similarity=0.256 Sum_probs=123.8
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC--CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh-h
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSF--SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY-K 97 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~-~ 97 (333)
..||+|+|-.+||||+++..++.+... .++.+|+.. ++.-.++. +.+..-.+.|+||.|...+ .
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiED-iY~~svet------------~rgarE~l~lyDTaGlq~~~~ 75 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIED-IYVASVET------------DRGAREQLRLYDTAGLQGGQQ 75 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchhh-heeEeeec------------CCChhheEEEeecccccCchh
Confidence 359999999999999999999865433 355667654 33444433 3355667999999997777 5
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.+-+.|+.-+|++++|||..+++||+.+...-.+|.++.. ...+||+|++||+|+.+. ++++.
T Consensus 76 eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~Kd-----------KKEvpiVVLaN~rdr~~p--~~vd~---- 138 (198)
T KOG3883|consen 76 ELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKD-----------KKEVPIVVLANKRDRAEP--REVDM---- 138 (198)
T ss_pred hhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccc-----------cccccEEEEechhhcccc--hhcCH----
Confidence 6677789999999999999999999998766666666532 358999999999999865 77875
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
+.+..||+.-.. .++| ++|++...+-+.|..+..
T Consensus 139 d~A~~Wa~rEkv-------kl~e---------Vta~dR~sL~epf~~l~~ 172 (198)
T KOG3883|consen 139 DVAQIWAKREKV-------KLWE---------VTAMDRPSLYEPFTYLAS 172 (198)
T ss_pred HHHHHHHhhhhe-------eEEE---------EEeccchhhhhHHHHHHH
Confidence 999999998764 4777 999998655555555443
No 175
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.77 E-value=7e-18 Score=172.36 Aligned_cols=165 Identities=19% Similarity=0.253 Sum_probs=112.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
.+...|+|+|..++|||||+++|.+..+......+++.++....+.+. .++..+.+.||||||++.|..
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~-----------~~~~~~kItfiDTPGhe~F~~ 310 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFE-----------YKDENQKIVFLDTPGHEAFSS 310 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEE-----------ecCCceEEEEEECCcHHHHHH
Confidence 345699999999999999999999887765444333333332233221 013457899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..++..+|++|+|+|+++....+....|. .+.. .++|+|||+||+|+.... .+
T Consensus 311 mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~-~~k~---------------~~iPiIVViNKiDl~~~~---------~e 365 (742)
T CHL00189 311 MRSRGANVTDIAILIIAADDGVKPQTIEAIN-YIQA---------------ANVPIIVAINKIDKANAN---------TE 365 (742)
T ss_pred HHHHHHHHCCEEEEEEECcCCCChhhHHHHH-HHHh---------------cCceEEEEEECCCccccC---------HH
Confidence 9998999999999999998854333332222 2222 268999999999997532 12
Q ss_pred HHHHHHHHcCCCC--CCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLP--SSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 179 ~~~~~~~~~~~~~--~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.+.+....+++.+ +...+|+++ +||++|.|++++++.+...
T Consensus 366 ~v~~eL~~~~ll~e~~g~~vpvv~---------VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 366 RIKQQLAKYNLIPEKWGGDTPMIP---------ISASQGTNIDKLLETILLL 408 (742)
T ss_pred HHHHHHHHhccchHhhCCCceEEE---------EECCCCCCHHHHHHhhhhh
Confidence 2322222222211 111257777 9999999999999887664
No 176
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.77 E-value=1.1e-17 Score=164.13 Aligned_cols=147 Identities=19% Similarity=0.169 Sum_probs=102.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh-----
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER----- 95 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~----- 95 (333)
.+|+|+|.+|||||||+|+|++.... ....+.++.+.....+.++ .+.+.+|||+|.+.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~---------------~~~~~liDT~G~~~~~~~~ 66 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWL---------------GREFILIDTGGIEPDDDGF 66 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEEC---------------CcEEEEEECCCCCCcchhH
Confidence 48999999999999999999987642 2333334445555555553 26799999999876
Q ss_pred ---hhhhHHhhccCCcEEEEEEECCCcccHHH--HHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 96 ---YKDCRSILYSQINGVIFVHDLSQRRTKTS--LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 96 ---~~~~~~~~~~~ad~vIlV~D~s~~~S~~~--l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
+......++..+|++|+|+|+++..+... +..|+.. . +.|+++|+||+|+....
T Consensus 67 ~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~---~---------------~~piilv~NK~D~~~~~--- 125 (435)
T PRK00093 67 EKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK---S---------------NKPVILVVNKVDGPDEE--- 125 (435)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---c---------------CCcEEEEEECccCccch---
Confidence 23334456789999999999998655432 3344432 2 57999999999975421
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
+...++ ..+|+. .+++ +||++|.|++++++.+..
T Consensus 126 -------~~~~~~-~~lg~~------~~~~---------iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 126 -------ADAYEF-YSLGLG------EPYP---------ISAEHGRGIGDLLDAILE 159 (435)
T ss_pred -------hhHHHH-HhcCCC------CCEE---------EEeeCCCCHHHHHHHHHh
Confidence 222232 344532 2455 999999999998888876
No 177
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.76 E-value=1.6e-17 Score=171.22 Aligned_cols=161 Identities=20% Similarity=0.213 Sum_probs=112.3
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
..+...|+|+|..++|||||+++|.+..+......+++.+.....+.++ ...+.||||||++.|.
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~---------------~~~ItfiDTPGhe~F~ 351 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN---------------GGKITFLDTPGHEAFT 351 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC---------------CEEEEEEECCCCccch
Confidence 3455689999999999999999999887765554444444444445443 3579999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++...+..+|++|+|||+++...-+....|. .+.. .++|+|||+||+|+...+.
T Consensus 352 ~m~~rga~~aDiaILVVdAddGv~~qT~e~i~-~a~~---------------~~vPiIVviNKiDl~~a~~--------- 406 (787)
T PRK05306 352 AMRARGAQVTDIVVLVVAADDGVMPQTIEAIN-HAKA---------------AGVPIIVAINKIDKPGANP--------- 406 (787)
T ss_pred hHHHhhhhhCCEEEEEEECCCCCCHhHHHHHH-HHHh---------------cCCcEEEEEECccccccCH---------
Confidence 99998899999999999999854322222222 2222 2689999999999965321
Q ss_pred HHHHHHHHHcCCCC--CCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLP--SSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 178 ~~~~~~~~~~~~~~--~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
+.........++.. +..++++++ +||++|.|++++++.+..
T Consensus 407 e~V~~eL~~~~~~~e~~g~~vp~vp---------vSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 407 DRVKQELSEYGLVPEEWGGDTIFVP---------VSAKTGEGIDELLEAILL 449 (787)
T ss_pred HHHHHHHHHhcccHHHhCCCceEEE---------EeCCCCCCchHHHHhhhh
Confidence 22222112222211 112367888 999999999999988875
No 178
>COG2262 HflX GTPases [General function prediction only]
Probab=99.76 E-value=1.4e-17 Score=156.49 Aligned_cols=156 Identities=19% Similarity=0.180 Sum_probs=121.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC---------c
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG---------H 93 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G---------~ 93 (333)
.|+++|++|+|||||+|+|++.........+.+++.+.+.+.+.+ ...+.+.||.| .
T Consensus 194 ~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~--------------g~~vlLtDTVGFI~~LP~~LV 259 (411)
T COG2262 194 LVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD--------------GRKVLLTDTVGFIRDLPHPLV 259 (411)
T ss_pred eEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC--------------CceEEEecCccCcccCChHHH
Confidence 999999999999999999998888778888888889999998862 45688999999 4
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
+.|+++... ...+|++++|+|++++...+++......+.+.+. .++|+|+|.||+|+..+.
T Consensus 260 ~AFksTLEE-~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~------------~~~p~i~v~NKiD~~~~~------ 320 (411)
T COG2262 260 EAFKSTLEE-VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGA------------DEIPIILVLNKIDLLEDE------ 320 (411)
T ss_pred HHHHHHHHH-hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCC------------CCCCEEEEEecccccCch------
Confidence 567777665 5689999999999999888888777777777643 368999999999987652
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+....+..... .. +.+||++|.|++.+.+.|.+.+...
T Consensus 321 ----~~~~~~~~~~~--------~~---------v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 321 ----EILAELERGSP--------NP---------VFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred ----hhhhhhhhcCC--------Ce---------EEEEeccCcCHHHHHHHHHHHhhhc
Confidence 10111111111 12 2299999999998888888877644
No 179
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.76 E-value=2.8e-17 Score=138.00 Aligned_cols=157 Identities=18% Similarity=0.196 Sum_probs=98.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh---
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK--- 97 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~--- 97 (333)
..+|+++|.+|+|||||+++|++..+................. +. ...+.+.+|||+|.....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-------------~~~~~~~liDtpG~~~~~~~~ 68 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI-YT-------------DDDAQIIFVDTPGIHKPKKKL 68 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE-EE-------------cCCeEEEEEECCCCCcchHHH
Confidence 4689999999999999999999875432211111111111111 11 234678999999964332
Q ss_pred -----hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 98 -----DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 98 -----~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
......+..+|++++|+|+++..+.. ...+...+... +.|+++|+||+|+.... ..
T Consensus 69 ~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~---------------~~~~iiv~nK~Dl~~~~--~~- 129 (168)
T cd04163 69 GERMVKAAWSALKDVDLVLFVVDASEPIGEG-DEFILELLKKS---------------KTPVILVLNKIDLVKDK--ED- 129 (168)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCccCch-HHHHHHHHHHh---------------CCCEEEEEEchhccccH--HH-
Confidence 22334577899999999999873211 22333444333 47999999999997431 10
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+.+....+....+. .++++ +|++++.|++++++.+.+.
T Consensus 130 ---~~~~~~~~~~~~~~------~~~~~---------~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 130 ---LLPLLEKLKELGPF------AEIFP---------ISALKGENVDELLEEIVKY 167 (168)
T ss_pred ---HHHHHHHHHhccCC------CceEE---------EEeccCCChHHHHHHHHhh
Confidence 11223333333321 45666 9999999999988887654
No 180
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.76 E-value=1.1e-17 Score=147.58 Aligned_cols=122 Identities=21% Similarity=0.287 Sum_probs=90.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
+|+|+|++|||||||+++|+++.+...+..+ ...+. .+... ..+..+.+.|||+||+++++.....
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~--~~~~~-----------~~~~~~~~~l~D~pG~~~~~~~~~~ 67 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVA--TFILN-----------SEGKGKKFRLVDVPGHPKLRDKLLE 67 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecce--EEEee-----------cCCCCceEEEEECCCCHHHHHHHHH
Confidence 6899999999999999999998776655433 22222 22221 1134567999999999999998888
Q ss_pred hccCC-cEEEEEEECCCc-ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc
Q 019959 103 LYSQI-NGVIFVHDLSQR-RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE 167 (333)
Q Consensus 103 ~~~~a-d~vIlV~D~s~~-~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~ 167 (333)
+++.+ +++|+|+|+++. .++..+..|+..+....... ...+|++||+||+|+....
T Consensus 68 ~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~---------~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 68 TLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKV---------KNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred HHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhc---------cCCCCEEEEecchhhcccC
Confidence 89998 999999999998 67777777766554321100 1368999999999997653
No 181
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.76 E-value=1e-17 Score=169.33 Aligned_cols=146 Identities=16% Similarity=0.158 Sum_probs=107.7
Q ss_pred CCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh------HH
Q 019959 28 GDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC------RS 101 (333)
Q Consensus 28 G~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~------~~ 101 (333)
|++|||||||+|++++..+...+.++.+.+.....+.++ ...+++|||||++++... ..
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~---------------~~~i~lvDtPG~~~~~~~s~~e~v~~ 65 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQ---------------GEDIEIVDLPGIYSLTTFSLEEEVAR 65 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEEC---------------CeEEEEEECCCccccCccchHHHHHH
Confidence 899999999999999887755566666666666666654 245899999998776543 33
Q ss_pred hhc--cCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 102 ILY--SQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 102 ~~~--~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
.++ ..+|++++|+|.++.+. ...+..++.+. ++|+++|+||+|+.++. .+. .+
T Consensus 66 ~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~~~---------------~~PiIIVlNK~Dl~~~~--~i~-----~d 120 (591)
T TIGR00437 66 DYLLNEKPDLVVNVVDASNLER---NLYLTLQLLEL---------------GIPMILALNLVDEAEKK--GIR-----ID 120 (591)
T ss_pred HHHhhcCCCEEEEEecCCcchh---hHHHHHHHHhc---------------CCCEEEEEehhHHHHhC--CCh-----hh
Confidence 333 37999999999998543 22344444433 68999999999997542 222 34
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+++++.+| +|+++ +||++|.|++++++.+.+.+
T Consensus 121 ~~~L~~~lg-------~pvv~---------tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 121 EEKLEERLG-------VPVVP---------TSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred HHHHHHHcC-------CCEEE---------EECCCCCCHHHHHHHHHHHh
Confidence 677888777 57888 99999999999999987653
No 182
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.75 E-value=2.1e-17 Score=161.75 Aligned_cols=150 Identities=19% Similarity=0.204 Sum_probs=103.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc--------
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH-------- 93 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~-------- 93 (333)
+|+|||.+|||||||+|+|++.... ....+.++.+.....+.++ ...+.||||+|.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~---------------~~~~~liDTpG~~~~~~~~~ 65 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWG---------------GREFILIDTGGIEEDDDGLD 65 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEEC---------------CeEEEEEECCCCCCcchhHH
Confidence 5899999999999999999987532 2233333444444455443 345999999995
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
+.+......++..+|++|+|+|+++..+.... .+...+.+. +.|+++|+||+|+....
T Consensus 66 ~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~-~i~~~l~~~---------------~~piilVvNK~D~~~~~------ 123 (429)
T TIGR03594 66 KQIREQAEIAIEEADVILFVVDGREGLTPEDE-EIAKWLRKS---------------GKPVILVANKIDGKKED------ 123 (429)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHHh---------------CCCEEEEEECccCCccc------
Confidence 44555566678899999999999986554432 222333333 57999999999987542
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
....+ ...+|+. ++++ +||+.|.|++++++.+.+.+
T Consensus 124 ----~~~~~-~~~lg~~------~~~~---------vSa~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 124 ----AVAAE-FYSLGFG------EPIP---------ISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred ----ccHHH-HHhcCCC------CeEE---------EeCCcCCChHHHHHHHHHhc
Confidence 11122 2345543 3555 99999999999988887654
No 183
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.75 E-value=2.3e-17 Score=161.87 Aligned_cols=172 Identities=17% Similarity=0.127 Sum_probs=108.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch----hhh
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE----RYK 97 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e----~~~ 97 (333)
.+|+|||.+|||||||+++|++........+..+++...-.+.+. ...+.||||||.. ...
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~---------------~~~f~laDtPGliegas~g~ 224 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAG---------------DTRFTVADVPGLIPGASEGK 224 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEEC---------------CeEEEEEECCCCccccchhh
Confidence 489999999999999999999765432222222333334444443 3569999999942 222
Q ss_pred hhHH---hhccCCcEEEEEEECCCc----ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 98 DCRS---ILYSQINGVIFVHDLSQR----RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 98 ~~~~---~~~~~ad~vIlV~D~s~~----~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
.+.. ..+..+|++|+|+|+++. +.++.+..|..++..+...... ..+-....+.|+|||+||+|+.+.. .
T Consensus 225 gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~-~~~~~~l~~kP~IVVlNKiDL~da~--e 301 (500)
T PRK12296 225 GLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDG-DLGLGDLAERPRLVVLNKIDVPDAR--E 301 (500)
T ss_pred HHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccc-cchhhhhcCCCEEEEEECccchhhH--H
Confidence 2222 235679999999999863 4566677777777655310000 0000011368999999999997541 1
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+ .+.........+ +++++ +||+++.|+++++..|.+.+...
T Consensus 302 l-----~e~l~~~l~~~g-------~~Vf~---------ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 302 L-----AEFVRPELEARG-------WPVFE---------VSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred H-----HHHHHHHHHHcC-------CeEEE---------EECCCCCCHHHHHHHHHHHHHhh
Confidence 1 122222223333 45777 99999999999999998877553
No 184
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.75 E-value=3.3e-17 Score=169.49 Aligned_cols=160 Identities=18% Similarity=0.126 Sum_probs=108.1
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch----
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE---- 94 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e---- 94 (333)
..+||+|+|.+|||||||+|+|++.... ....++.+.+.....+.++ +. .+.||||+|..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~-------------~~--~~~liDTaG~~~~~~ 513 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEID-------------GE--DWLFIDTAGIKRRQH 513 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEEC-------------CC--EEEEEECCCcccCcc
Confidence 4579999999999999999999988642 2333333455555555554 22 36799999942
Q ss_pred ------hhhhhH-HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc
Q 019959 95 ------RYKDCR-SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE 167 (333)
Q Consensus 95 ------~~~~~~-~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~ 167 (333)
.|..+. ..+++.+|++|+|+|+++..+++.+. ++..+... +.|++||+||+|+.+..
T Consensus 514 ~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~~---------------~~piIiV~NK~DL~~~~ 577 (712)
T PRK09518 514 KLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVDA---------------GRALVLVFNKWDLMDEF 577 (712)
T ss_pred cchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHHc---------------CCCEEEEEEchhcCChh
Confidence 233332 23478999999999999998888775 44444443 58999999999997542
Q ss_pred CCccCcccHHHHHH-HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAAR-QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 168 ~r~v~~~~~~~~~~-~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
. .+... .+...+.... ..+.++ +||++|.|++++++.+.+.+.
T Consensus 578 ~--------~~~~~~~~~~~l~~~~---~~~ii~---------iSAktg~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 578 R--------RQRLERLWKTEFDRVT---WARRVN---------LSAKTGWHTNRLAPAMQEALE 621 (712)
T ss_pred H--------HHHHHHHHHHhccCCC---CCCEEE---------EECCCCCCHHHHHHHHHHHHH
Confidence 1 01111 2222222111 134455 999999999999999887654
No 185
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.75 E-value=4.4e-17 Score=156.81 Aligned_cols=164 Identities=13% Similarity=0.058 Sum_probs=110.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh------
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY------ 96 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~------ 96 (333)
.|+|||.+|||||||+|+|++........+..+.....-.+.+. ....+.|+||||..+-
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~--------------~~~~i~~vDtPGi~~~a~~~~~ 226 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD--------------DERSFVVADIPGLIEGASEGAG 226 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC--------------CCcEEEEEeCCCccccccchhh
Confidence 79999999999999999999765433322222233333334332 2245899999995321
Q ss_pred -hhhHHhhccCCcEEEEEEECC---CcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 97 -KDCRSILYSQINGVIFVHDLS---QRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 97 -~~~~~~~~~~ad~vIlV~D~s---~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
.......+..+|++++|+|++ +.+.++.+..|+.++..... ...+.|++||+||+|+.... .
T Consensus 227 Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~----------~L~~kP~IlVlNKiDl~~~~--e-- 292 (390)
T PRK12298 227 LGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSP----------KLAEKPRWLVFNKIDLLDEE--E-- 292 (390)
T ss_pred HHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhh----------hhcCCCEEEEEeCCccCChH--H--
Confidence 111112477899999999998 55678888888888876531 11258999999999997541 1
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+.+..+.+.+.++.. .+++. +||+++.|++++++.+.+.+-.
T Consensus 293 ---l~~~l~~l~~~~~~~-----~~Vi~---------ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 293 ---AEERAKAIVEALGWE-----GPVYL---------ISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred ---HHHHHHHHHHHhCCC-----CCEEE---------EECCCCcCHHHHHHHHHHHhhh
Confidence 124445555544421 24555 9999999999999988876644
No 186
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.74 E-value=2.4e-17 Score=145.46 Aligned_cols=171 Identities=15% Similarity=0.184 Sum_probs=98.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCC---CCCCCcccceeEEEEEEEeCCC------CC-----CCCccC-------CCCC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSS---FSRPSQTIGCTVGVKHITYGSS------GS-----SSNSIK-------GDSE 80 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~------~~-----~~~~i~-------~~~~ 80 (333)
++|+|+|..|+|||||+.++.+... ..+....+.+......+.+... .+ ..+... ....
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999975411 1111111111111111111000 00 000000 0111
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCc----ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEE
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR----RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVV 156 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~----~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Piiv 156 (333)
....+.||||||+++|.......+..+|++|+|+|++++ .+++.+..| .... ..|++|
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~~~--------------~~~iii 142 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EIMG--------------LKHIII 142 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HHcC--------------CCcEEE
Confidence 236799999999999888777778889999999999974 233333322 2221 247999
Q ss_pred EeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 157 IGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 157 VgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
|+||+|+....... +..+.+++++..... ..+++++ +||++|.|++++++.+.+
T Consensus 143 vvNK~Dl~~~~~~~----~~~~~i~~~~~~~~~----~~~~i~~---------vSA~~g~gi~~L~~~l~~ 196 (203)
T cd01888 143 VQNKIDLVKEEQAL----ENYEQIKKFVKGTIA----ENAPIIP---------ISAQLKYNIDVLLEYIVK 196 (203)
T ss_pred EEEchhccCHHHHH----HHHHHHHHHHhcccc----CCCcEEE---------EeCCCCCCHHHHHHHHHH
Confidence 99999997531100 111333333333221 1256777 999999999888877765
No 187
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=7.9e-18 Score=140.09 Aligned_cols=163 Identities=19% Similarity=0.271 Sum_probs=124.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCC---C----CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGS---S----FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~---~----~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
.+-|+|+|..++|||||+.+..... + ...-.+|+|+......+. ...+.+||..||
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~-----------------~~~l~fwdlgGQ 79 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC-----------------NAPLSFWDLGGQ 79 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec-----------------cceeEEEEcCCh
Confidence 4689999999999999999886431 1 123456777666555543 346999999999
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
+..++++..||..+|++|+|+|+++++.|+....-+..+..+.. .+++|+++.+||.|+.+.. .
T Consensus 80 e~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~-----------leg~p~L~lankqd~q~~~----~- 143 (197)
T KOG0076|consen 80 ESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEK-----------LEGAPVLVLANKQDLQNAM----E- 143 (197)
T ss_pred HHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHH-----------hcCCchhhhcchhhhhhhh----h-
Confidence 99999999999999999999999999999988777777665533 2589999999999998752 1
Q ss_pred ccHHHHHHHH---HHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 174 GNLVDAARQW---VEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 174 ~~~~~~~~~~---~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.++.... ++..+-. ++++.. |||.+|.||++.++++...+.++
T Consensus 144 ---~~El~~~~~~~e~~~~r----d~~~~p---------vSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 144 ---AAELDGVFGLAELIPRR----DNPFQP---------VSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ---HHHHHHHhhhhhhcCCc----cCcccc---------chhhhcccHHHHHHHHHHHHhhc
Confidence 1222222 2222221 467777 99999999999999999888766
No 188
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.74 E-value=5.2e-17 Score=134.66 Aligned_cols=153 Identities=18% Similarity=0.151 Sum_probs=100.6
Q ss_pred EECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh------
Q 019959 26 VVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD------ 98 (333)
Q Consensus 26 ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~------ 98 (333)
|+|..|+|||||++++++.... ................... ....+.+|||+|...+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~Dt~g~~~~~~~~~~~~ 66 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG--------------PLGPVVLIDTPGIDEAGGLGRERE 66 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec--------------CCCcEEEEECCCCCccccchhhHH
Confidence 5899999999999999976544 2222222222223333321 245699999999765432
Q ss_pred -hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 99 -CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 99 -~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
....++..+|++++|+|+++..+..... |....... +.|+++|+||+|+....
T Consensus 67 ~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~~---------------~~~~ivv~nK~D~~~~~---------- 120 (163)
T cd00880 67 ELARRVLERADLILFVVDADLRADEEEEK-LLELLRER---------------GKPVLLVLNKIDLLPEE---------- 120 (163)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHhc---------------CCeEEEEEEccccCChh----------
Confidence 3334688999999999999998877665 44444433 68999999999998652
Q ss_pred HHHHHHHH-HcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 178 DAARQWVE-KQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 178 ~~~~~~~~-~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
....+.. ..........+++++ +||+++.|++++++.+.+.
T Consensus 121 -~~~~~~~~~~~~~~~~~~~~~~~---------~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 121 -EEEELLELRLLILLLLLGLPVIA---------VSALTGEGIDELREALIEA 162 (163)
T ss_pred -hHHHHHHHHHhhcccccCCceEE---------EeeeccCCHHHHHHHHHhh
Confidence 1111110 000111112366777 9999999999888887654
No 189
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=1.1e-16 Score=156.99 Aligned_cols=161 Identities=16% Similarity=0.157 Sum_probs=106.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh--
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGS-SFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER-- 95 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~-- 95 (333)
...++|+|+|.+|||||||+++|++.. ......+....+.....+.++ ...+.+|||+|..+
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~---------------~~~~~lvDT~G~~~~~ 235 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERD---------------GQKYTLIDTAGIRRKG 235 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEEC---------------CeeEEEEECCCCCCCc
Confidence 356899999999999999999999764 223333333334333344332 34578999999532
Q ss_pred --------hhhhH-HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 96 --------YKDCR-SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 96 --------~~~~~-~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
|.... ..++..+|++|+|+|+++..+..... ++..+... ..|+++|+||+|+.+.
T Consensus 236 ~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~---------------~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 236 KVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALEA---------------GRALVIVVNKWDLVDE 299 (435)
T ss_pred chhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc---------------CCcEEEEEECccCCCH
Confidence 22222 23578999999999999988877653 34444443 5799999999999743
Q ss_pred cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
. . . .+....+...+... ..+|+++ +||++|.|++++++.+.+..
T Consensus 300 ~--~--~---~~~~~~~~~~l~~~---~~~~i~~---------~SA~~~~gv~~l~~~i~~~~ 343 (435)
T PRK00093 300 K--T--M---EEFKKELRRRLPFL---DYAPIVF---------ISALTGQGVDKLLEAIDEAY 343 (435)
T ss_pred H--H--H---HHHHHHHHHhcccc---cCCCEEE---------EeCCCCCCHHHHHHHHHHHH
Confidence 1 0 0 12222222222211 2356777 99999999999998887654
No 190
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.74 E-value=6.4e-17 Score=145.77 Aligned_cols=160 Identities=17% Similarity=0.161 Sum_probs=100.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh-----
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK----- 97 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~----- 97 (333)
+|+|+|.+|||||||+++|++........+..+.+.....+.++ ...+++|||||..+..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~---------------~~~i~l~DtpG~~~~~~~~~~ 66 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYK---------------GAKIQLLDLPGIIEGAADGKG 66 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEEC---------------CeEEEEEECCCcccccccchh
Confidence 79999999999999999999775322222222233334444443 3579999999964322
Q ss_pred --hhHHhhccCCcEEEEEEECCCccc-HHHHHHHHHHHHhcCCC-CCCCC--------CCC-------------------
Q 019959 98 --DCRSILYSQINGVIFVHDLSQRRT-KTSLQKWAVEIATSGTF-SAPLA--------SGG------------------- 146 (333)
Q Consensus 98 --~~~~~~~~~ad~vIlV~D~s~~~S-~~~l~~~~~~i~~~~~~-~~~~~--------~~~------------------- 146 (333)
.....+++.+|++++|+|+++... .+.+...+.. .+.. ..+.. .++
T Consensus 67 ~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~---~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~ 143 (233)
T cd01896 67 RGRQVIAVARTADLILMVLDATKPEGHREILERELEG---VGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKA 143 (233)
T ss_pred HHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHH---cCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHH
Confidence 122346889999999999988652 3333222221 1110 00000 000
Q ss_pred ----------------------------CCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCc
Q 019959 147 ----------------------------PGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPL 198 (333)
Q Consensus 147 ----------------------------~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 198 (333)
.....+|+++|+||+|+... +++..+++. .++
T Consensus 144 ~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-----------~~~~~~~~~---------~~~ 203 (233)
T cd01896 144 ILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-----------EELDLLARQ---------PNS 203 (233)
T ss_pred HHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCH-----------HHHHHHhcC---------CCE
Confidence 00124799999999999753 445544432 235
Q ss_pred cccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 199 TESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 199 ~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
++ +||++|.|++++++.+++.+
T Consensus 204 ~~---------~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 204 VV---------ISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred EE---------EcCCCCCCHHHHHHHHHHHh
Confidence 66 99999999999999998765
No 191
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.74 E-value=7.8e-17 Score=166.74 Aligned_cols=154 Identities=23% Similarity=0.175 Sum_probs=103.4
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh---
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER--- 95 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~--- 95 (333)
...+|+|+|.+|||||||+|+|++... .....++++.+.......++ ...+.+|||+|.+.
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~---------------~~~~~liDT~G~~~~~~ 338 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWA---------------GTDFKLVDTGGWEADVE 338 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEEC---------------CEEEEEEeCCCcCCCCc
Confidence 346899999999999999999998754 22333333334333333332 35689999999653
Q ss_pred -----hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 96 -----YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 96 -----~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
+......++..+|++|+|+|+++.-.... ..|...+... +.|+|+|+||+|+....
T Consensus 339 ~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~~---------------~~pvIlV~NK~D~~~~~--- 399 (712)
T PRK09518 339 GIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRRA---------------GKPVVLAVNKIDDQASE--- 399 (712)
T ss_pred cHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHhc---------------CCCEEEEEECcccccch---
Confidence 34445567889999999999987533222 2455555443 68999999999986431
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
....++ ..+++. . .++ +||++|.|++++++.+++.+.
T Consensus 400 -------~~~~~~-~~lg~~-----~-~~~---------iSA~~g~GI~eLl~~i~~~l~ 436 (712)
T PRK09518 400 -------YDAAEF-WKLGLG-----E-PYP---------ISAMHGRGVGDLLDEALDSLK 436 (712)
T ss_pred -------hhHHHH-HHcCCC-----C-eEE---------EECCCCCCchHHHHHHHHhcc
Confidence 112222 123432 1 245 999999999999998887653
No 192
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.74 E-value=7.4e-17 Score=166.84 Aligned_cols=152 Identities=19% Similarity=0.196 Sum_probs=110.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh-
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC- 99 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~- 99 (333)
.++|+++|.+|||||||+|+|++........ .|.++..+...+. .....+.+|||||...+...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~--pGvTve~k~g~~~-------------~~~~~i~lvDtPG~ysl~~~~ 67 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNW--AGVTVERKEGQFS-------------TTDHQVTLVDLPGTYSLTTIS 67 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCceEeeEEEEEE-------------cCceEEEEEECCCcccccccc
Confidence 5799999999999999999999876543333 3455555544443 34567999999998665321
Q ss_pred ---------HHhh--ccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC
Q 019959 100 ---------RSIL--YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 168 (333)
Q Consensus 100 ---------~~~~--~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~ 168 (333)
...+ ...+|++|+|+|+++.+... .|..++.+. ++|+++|+||+|+.++.
T Consensus 68 ~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l---~l~~ql~e~---------------giPvIvVlNK~Dl~~~~- 128 (772)
T PRK09554 68 SQTSLDEQIACHYILSGDADLLINVVDASNLERNL---YLTLQLLEL---------------GIPCIVALNMLDIAEKQ- 128 (772)
T ss_pred ccccHHHHHHHHHHhccCCCEEEEEecCCcchhhH---HHHHHHHHc---------------CCCEEEEEEchhhhhcc-
Confidence 1223 24899999999999865432 355556554 58999999999997542
Q ss_pred CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 169 TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 169 r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.+. .+.+++.+.+| +|+++ +||++|.|++++.+.+.+.
T Consensus 129 -~i~-----id~~~L~~~LG-------~pVvp---------iSA~~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 129 -NIR-----IDIDALSARLG-------CPVIP---------LVSTRGRGIEALKLAIDRH 166 (772)
T ss_pred -CcH-----HHHHHHHHHhC-------CCEEE---------EEeecCCCHHHHHHHHHHh
Confidence 222 45677888887 57888 9999999998888777654
No 193
>PRK00089 era GTPase Era; Reviewed
Probab=99.72 E-value=1.3e-16 Score=148.52 Aligned_cols=156 Identities=19% Similarity=0.195 Sum_probs=98.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh--
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFS--RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY-- 96 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~-- 96 (333)
.-.|+|+|.+|||||||+|+|++..+.. ....|.. +. ...+.. .....+.+|||||....
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~-~~-i~~i~~--------------~~~~qi~~iDTPG~~~~~~ 68 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR-HR-IRGIVT--------------EDDAQIIFVDTPGIHKPKR 68 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCccc-cc-EEEEEE--------------cCCceEEEEECCCCCCchh
Confidence 3479999999999999999999876532 1222211 11 111111 12367999999995332
Q ss_pred ------hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 97 ------KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 97 ------~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
.......+..+|++++|+|+++..+.. ....+..+... +.|+++|+||+|+.... .
T Consensus 69 ~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~-~~~i~~~l~~~---------------~~pvilVlNKiDl~~~~--~ 130 (292)
T PRK00089 69 ALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPG-DEFILEKLKKV---------------KTPVILVLNKIDLVKDK--E 130 (292)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChh-HHHHHHHHhhc---------------CCCEEEEEECCcCCCCH--H
Confidence 222334577999999999999843221 12223333322 58999999999997431 1
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
++.+....+.+..+. .++++ +||+++.|++++++.+.+.+
T Consensus 131 ----~l~~~~~~l~~~~~~------~~i~~---------iSA~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 131 ----ELLPLLEELSELMDF------AEIVP---------ISALKGDNVDELLDVIAKYL 170 (292)
T ss_pred ----HHHHHHHHHHhhCCC------CeEEE---------ecCCCCCCHHHHHHHHHHhC
Confidence 112445555554442 34666 99999999988888776643
No 194
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.72 E-value=2e-16 Score=160.08 Aligned_cols=163 Identities=15% Similarity=0.191 Sum_probs=113.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC-----CC------CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEE
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGS--SFS-----RP------SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELW 88 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~--~~~-----~~------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~ 88 (333)
-+|+|+|..++|||||+.+|+... +.. .. ..+.|.++....+.+.- ...++..+.++||
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~--------~~~dg~~~~lnLi 79 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNY--------KAKDGETYILNLI 79 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEE--------EccCCCcEEEEEE
Confidence 389999999999999999998531 111 00 11234444433332210 0012567899999
Q ss_pred eCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC
Q 019959 89 DISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 168 (333)
Q Consensus 89 Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~ 168 (333)
||||+++|...+..++..+|++|+|+|+++....+....|.... .. ++|+++|+||+|+.....
T Consensus 80 DTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~~---------------~lpiIvViNKiDl~~a~~ 143 (600)
T PRK05433 80 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-EN---------------DLEIIPVLNKIDLPAADP 143 (600)
T ss_pred ECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-HC---------------CCCEEEEEECCCCCcccH
Confidence 99999999998889999999999999999987777766665433 22 579999999999864321
Q ss_pred CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 169 TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 169 r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+...++.+.+++.. ..+++ +||++|.|++++++.+.+.+
T Consensus 144 --------~~v~~ei~~~lg~~~----~~vi~---------iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 144 --------ERVKQEIEDVIGIDA----SDAVL---------VSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred --------HHHHHHHHHHhCCCc----ceEEE---------EecCCCCCHHHHHHHHHHhC
Confidence 123345555555421 12555 99999999999888887654
No 195
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.72 E-value=2.3e-16 Score=158.72 Aligned_cols=123 Identities=25% Similarity=0.272 Sum_probs=80.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC----CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRP----SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
-|+|+|..++|||||+++|++..+.... .+++|..+..........+....... .+.....+.||||||++.|..
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~-v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFK-IRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccc-cccccCcEEEEECCCcHhHHH
Confidence 6999999999999999999988775433 33444433221110000000000000 001112388999999999999
Q ss_pred hHHhhccCCcEEEEEEECCC---cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC
Q 019959 99 CRSILYSQINGVIFVHDLSQ---RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 165 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~---~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~ 165 (333)
++..++..+|++|+|||+++ +.+++.+..+ ... ++|+++|+||+|+..
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~~---------------~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALNIL----RMY---------------KTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HHc---------------CCCEEEEEECCCccc
Confidence 99999999999999999998 4445444322 222 589999999999974
No 196
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.71 E-value=1.6e-16 Score=133.70 Aligned_cols=154 Identities=19% Similarity=0.300 Sum_probs=100.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch--------
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE-------- 94 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e-------- 94 (333)
+|+++|++|||||||++.++++.+.....++.+.+.....+..+ + .+.+|||+|..
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-------------~---~~~~~D~~g~~~~~~~~~~ 64 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-------------D---KFRLVDLPGYGYAKVSKEV 64 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-------------C---eEEEecCCCccccccCHHH
Confidence 48999999999999999999776666666666665555544432 1 69999999932
Q ss_pred --hhhhhHHhhcc---CCcEEEEEEECCCcccH--HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc
Q 019959 95 --RYKDCRSILYS---QINGVIFVHDLSQRRTK--TSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE 167 (333)
Q Consensus 95 --~~~~~~~~~~~---~ad~vIlV~D~s~~~S~--~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~ 167 (333)
.+......++. .++++++|+|.++..+. ..+..|+... +.|+++|+||+|+....
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------------------~~~vi~v~nK~D~~~~~ 126 (170)
T cd01876 65 KEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------------------GIPFLVVLTKADKLKKS 126 (170)
T ss_pred HHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------------------CCCEEEEEEchhcCChH
Confidence 34444444444 45789999999876432 2334454432 47999999999996432
Q ss_pred CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 168 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.+... ......+.+.... ..++++ +||+++.|++++++.+.+.
T Consensus 127 ~~~~~----~~~~~~~l~~~~~-----~~~~~~---------~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 127 ELAKA----LKEIKKELKLFEI-----DPPIIL---------FSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHH----HHHHHHHHHhccC-----CCceEE---------EecCCCCCHHHHHHHHHHh
Confidence 11100 1222222221111 245666 9999999999998888764
No 197
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.71 E-value=6.3e-17 Score=130.28 Aligned_cols=165 Identities=19% Similarity=0.315 Sum_probs=125.8
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
++..+++||.++|-.++|||||+..|..... ..-.+|.| |..+.+.++ ..+.+++||..|+..
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~~--------------g~f~LnvwDiGGqr~ 74 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEYD--------------GTFHLNVWDIGGQRG 74 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEeec--------------CcEEEEEEecCCccc
Confidence 3457789999999999999999999976543 44456666 556777764 579999999999999
Q ss_pred hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
.+..+..||...|++|+|+|.+|...|+++..-+.++.+..+. ..+|+++..||.|+.-.
T Consensus 75 IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl-----------~~vpvlIfankQdllta--------- 134 (185)
T KOG0074|consen 75 IRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKL-----------AEVPVLIFANKQDLLTA--------- 134 (185)
T ss_pred cchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhh-----------hccceeehhhhhHHHhh---------
Confidence 9999999999999999999999999999998877777666442 37999999999998754
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
..+++.+.++++.........++ +|||.++.|+.+..+.+..
T Consensus 135 --a~~eeia~klnl~~lrdRswhIq--------~csals~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 135 --AKVEEIALKLNLAGLRDRSWHIQ--------ECSALSLEGSTDGSDWVQS 176 (185)
T ss_pred --cchHHHHHhcchhhhhhceEEee--------eCccccccCccCcchhhhc
Confidence 22344455554432222222232 2999999998888877754
No 198
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.70 E-value=8.9e-17 Score=159.46 Aligned_cols=190 Identities=19% Similarity=0.223 Sum_probs=131.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc-------
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH------- 93 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~------- 93 (333)
..+|+++|+||||||||+|++++......+.+.++++...-.+.+. ...+++.|+||.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~---------------~~~i~ivDLPG~YSL~~~S 67 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYK---------------GHEIEIVDLPGTYSLTAYS 67 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEec---------------CceEEEEeCCCcCCCCCCC
Confidence 4579999999999999999999887766666655555555555443 345899999993
Q ss_pred hhhhhhHHhhc-cCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 94 ERYKDCRSILY-SQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 94 e~~~~~~~~~~-~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
++-.-.++..+ ...|++|.|.|++|.+..-.+.-.+.+ . ++|++++.|++|...+.+.+++
T Consensus 68 ~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyltlQLlE---~---------------g~p~ilaLNm~D~A~~~Gi~ID 129 (653)
T COG0370 68 EDEKVARDFLLEGKPDLIVNVVDATNLERNLYLTLQLLE---L---------------GIPMILALNMIDEAKKRGIRID 129 (653)
T ss_pred chHHHHHHHHhcCCCCEEEEEcccchHHHHHHHHHHHHH---c---------------CCCeEEEeccHhhHHhcCCccc
Confidence 11122222223 367999999999998765555444333 3 6899999999999988666555
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCC
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEMPAPNPWSISPTHK 252 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 252 (333)
.+.+.+.+| +|.++ +||++|.|+++++.++.+....+.. .-..++..++++
T Consensus 130 -------~~~L~~~LG-------vPVv~---------tvA~~g~G~~~l~~~i~~~~~~~~~------~~~~~y~~~ie~ 180 (653)
T COG0370 130 -------IEKLSKLLG-------VPVVP---------TVAKRGEGLEELKRAIIELAESKTT------PREVDYGEEIEE 180 (653)
T ss_pred -------HHHHHHHhC-------CCEEE---------EEeecCCCHHHHHHHHHHhcccccc------ccccccchHHHH
Confidence 677888888 68988 9999999988887777654322211 233455666666
Q ss_pred CcccccccCCCCccccc-cCCC
Q 019959 253 PIQRLDENSSDDDKFYS-SGYS 273 (333)
Q Consensus 253 ~~~~~~~~~~~~~~~~~-~~l~ 273 (333)
.+..++ ...+..++.. +.|.
T Consensus 181 ~i~~l~-~~~~~~r~lai~lL~ 201 (653)
T COG0370 181 EIKELE-ALSEDPRWLAIKLLE 201 (653)
T ss_pred HHHHHH-hhcchhHHHHHHHhc
Confidence 666666 4433334443 4444
No 199
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.70 E-value=6.6e-17 Score=140.82 Aligned_cols=166 Identities=17% Similarity=0.219 Sum_probs=109.5
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCC------------------CcccceeEEEEEEEeCCCCCCCCccCCCCCc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRP------------------SQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 81 (333)
..++|+|+|..++|||||+.+|+........ ...+..+.....+.. ...
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~-------------~~~ 68 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEK-------------NEN 68 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEB-------------TES
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccc-------------ccc
Confidence 3568999999999999999999944321110 011122222233321 135
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
...+.|+||||+.+|.......+..+|++|+|+|+.+...... ...+..+... ++|+|+|.||+
T Consensus 69 ~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~---------------~~p~ivvlNK~ 132 (188)
T PF00009_consen 69 NRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL---------------GIPIIVVLNKM 132 (188)
T ss_dssp SEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT---------------T-SEEEEEETC
T ss_pred ccceeecccccccceeecccceecccccceeeeeccccccccc-cccccccccc---------------ccceEEeeeec
Confidence 6789999999999998888888999999999999998755433 3334444444 68999999999
Q ss_pred CCCCccCCccCcccHHHHHH-HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 162 DVAAKEGTRGSSGNLVDAAR-QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 162 Dl~~~~~r~v~~~~~~~~~~-~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
|+...+-.. +.++.. .+.+..+.... ..+|++. +||++|.|++++++.+.+.+
T Consensus 133 D~~~~~~~~-----~~~~~~~~l~~~~~~~~~-~~~~vi~---------~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 133 DLIEKELEE-----IIEEIKEKLLKEYGENGE-EIVPVIP---------ISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TSSHHHHHH-----HHHHHHHHHHHHTTSTTT-STEEEEE---------EBTTTTBTHHHHHHHHHHHS
T ss_pred cchhhhHHH-----HHHHHHHHhccccccCcc-ccceEEE---------EecCCCCCHHHHHHHHHHhC
Confidence 998331111 112222 44444544311 1257777 99999999998888887653
No 200
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.70 E-value=1.7e-16 Score=140.57 Aligned_cols=153 Identities=19% Similarity=0.181 Sum_probs=95.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC-CCCC------------------------------CCcccceeEEEEEEEeCCCCCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS-SFSR------------------------------PSQTIGCTVGVKHITYGSSGSS 71 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~-~~~~------------------------------~~~t~~~~~~~~~~~~~~~~~~ 71 (333)
+|+|+|.+|+|||||+++|+... .+.. ....++.+.....+..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~------ 74 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST------ 74 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec------
Confidence 58999999999999999998432 1110 0011122222222222
Q ss_pred CCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 019959 72 SNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLP 151 (333)
Q Consensus 72 ~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 151 (333)
....+.||||||+++|.......+..+|++|+|+|+++...-... .+...+.... .
T Consensus 75 ---------~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~~~~~~~--------------~ 130 (208)
T cd04166 75 ---------PKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHSYILSLLG--------------I 130 (208)
T ss_pred ---------CCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHHHHHHcC--------------C
Confidence 245688999999998876666678899999999999876432222 2222222221 2
Q ss_pred CcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHH
Q 019959 152 VPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKE 220 (333)
Q Consensus 152 ~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~ 220 (333)
.++|+|+||+|+.... ......+.++.+++.+.+++. ..+++. +||++|.|+++
T Consensus 131 ~~iIvviNK~D~~~~~--~~~~~~i~~~~~~~~~~~~~~----~~~ii~---------iSA~~g~ni~~ 184 (208)
T cd04166 131 RHVVVAVNKMDLVDYS--EEVFEEIVADYLAFAAKLGIE----DITFIP---------ISALDGDNVVS 184 (208)
T ss_pred CcEEEEEEchhcccCC--HHHHHHHHHHHHHHHHHcCCC----CceEEE---------EeCCCCCCCcc
Confidence 3578899999997431 111111234566666777643 145666 99999988874
No 201
>PRK10218 GTP-binding protein; Provisional
Probab=99.70 E-value=5.3e-16 Score=156.55 Aligned_cols=154 Identities=18% Similarity=0.207 Sum_probs=107.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHHc--CCCCCC------------CCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEE
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVK--GSSFSR------------PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVE 86 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~--~~~~~~------------~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 86 (333)
.-+|+|+|..++|||||+++|+. +.+... ...+.|.++..+...+. ...++++
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~-------------~~~~~in 71 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIK-------------WNDYRIN 71 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEe-------------cCCEEEE
Confidence 35899999999999999999996 333222 12345666666666554 3568899
Q ss_pred EEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 87 LWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 87 i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
||||||+.+|...+..+++.+|++|+|+|+++....+. ..++..+... ++|+++|.||+|+...
T Consensus 72 liDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~~---------------gip~IVviNKiD~~~a 135 (607)
T PRK10218 72 IVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFAY---------------GLKPIVVINKVDRPGA 135 (607)
T ss_pred EEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHHc---------------CCCEEEEEECcCCCCC
Confidence 99999999999999999999999999999988644333 3334444443 5789999999998754
Q ss_pred cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcC
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY 217 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~ 217 (333)
.... +.++...+...++......++|++. +||++|.+
T Consensus 136 ~~~~-----vl~ei~~l~~~l~~~~~~~~~PVi~---------~SA~~G~~ 172 (607)
T PRK10218 136 RPDW-----VVDQVFDLFVNLDATDEQLDFPIVY---------ASALNGIA 172 (607)
T ss_pred chhH-----HHHHHHHHHhccCccccccCCCEEE---------eEhhcCcc
Confidence 2111 1244444443333321112366777 99999984
No 202
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.70 E-value=2.7e-16 Score=158.69 Aligned_cols=163 Identities=17% Similarity=0.208 Sum_probs=110.9
Q ss_pred EEEEECCCCCCHHHHHHHHHc--CCCCCCC------------CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK--GSSFSRP------------SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELW 88 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~ 88 (333)
+|+|+|..++|||||+.+|+. +.+.... ....|.++..+...+. ...++++||
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~-------------~~~~kinlI 69 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIR-------------YNGTKINIV 69 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEE-------------ECCEEEEEE
Confidence 699999999999999999985 3332211 1123455555444433 346889999
Q ss_pred eCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC
Q 019959 89 DISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 168 (333)
Q Consensus 89 Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~ 168 (333)
||||+.+|......+++.+|++|+|+|+++.. ......|+..+... ++|+|||+||+|+.....
T Consensus 70 DTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---------------~ip~IVviNKiD~~~a~~ 133 (594)
T TIGR01394 70 DTPGHADFGGEVERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---------------GLKPIVVINKIDRPSARP 133 (594)
T ss_pred ECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---------------CCCEEEEEECCCCCCcCH
Confidence 99999999988888999999999999998753 44455677766655 589999999999865421
Q ss_pred CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCc----------CHHHHHHHHHHH
Q 019959 169 TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR----------YDKEAVMKFFRM 228 (333)
Q Consensus 169 r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~----------~v~~~~~~l~~~ 228 (333)
. ++.++...+...++...-...+|++. +||++|. |++.+++.+++.
T Consensus 134 ~-----~v~~ei~~l~~~~g~~~e~l~~pvl~---------~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~ 189 (594)
T TIGR01394 134 D-----EVVDEVFDLFAELGADDEQLDFPIVY---------ASGRAGWASLDLDDPSDNMAPLFDAIVRH 189 (594)
T ss_pred H-----HHHHHHHHHHHhhccccccccCcEEe---------chhhcCcccccCcccccCHHHHHHHHHHh
Confidence 1 11244555554444321111256777 9999996 566665555543
No 203
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=1.3e-15 Score=128.58 Aligned_cols=160 Identities=23% Similarity=0.295 Sum_probs=118.6
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCC---------CC---CCcccceeEEEEEEEeCCCCCCCCccCCCCCceE
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSF---------SR---PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDF 83 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~---------~~---~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 83 (333)
.-.....||+|+|+-++||||++.++...... .. ...|+..|+....+ +...
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~----------------~~~~ 68 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL----------------DEDT 68 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE----------------cCcc
Confidence 34556789999999999999999999976521 11 12455566654444 2346
Q ss_pred EEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC
Q 019959 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163 (333)
Q Consensus 84 ~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl 163 (333)
.+.|++||||+||+-++..+.+++++.|+++|.+.+..| +....+..+.... .+|++|+.||.||
T Consensus 69 ~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--------------~ip~vVa~NK~DL 133 (187)
T COG2229 69 GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--------------PIPVVVAINKQDL 133 (187)
T ss_pred eEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--------------CCCEEEEeecccc
Confidence 799999999999999999999999999999999999998 4444555444431 3899999999999
Q ss_pred CCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 164 AAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 164 ~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.+... .+.++++.+...+ .+|.++ ++|.++.++.+.++.+...
T Consensus 134 ~~a~p--------pe~i~e~l~~~~~-----~~~vi~---------~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 134 FDALP--------PEKIREALKLELL-----SVPVIE---------IDATEGEGARDQLDVLLLK 176 (187)
T ss_pred CCCCC--------HHHHHHHHHhccC-----CCceee---------eecccchhHHHHHHHHHhh
Confidence 97632 2455555444322 367888 9999998888877776543
No 204
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.69 E-value=2.4e-16 Score=140.04 Aligned_cols=118 Identities=21% Similarity=0.351 Sum_probs=82.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC-----------------CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRP-----------------SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFV 85 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 85 (333)
+|+|+|..++|||||+++|+........ ....|.++....+.+. ....++..+.+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~--------~~~~~~~~~~i 73 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLV--------LPDSKGKSYLF 73 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEE--------EEcCCCCEEEE
Confidence 6899999999999999999965432210 0112222222222210 00012457889
Q ss_pred EEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 86 ELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 86 ~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
.+|||||+++|......++..+|++|+|+|+++..++.. ..|+..+... ++|+++|+||+|+.
T Consensus 74 ~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~~---------------~~p~iiviNK~D~~ 136 (213)
T cd04167 74 NIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAILE---------------GLPIVLVINKIDRL 136 (213)
T ss_pred EEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc---------------CCCEEEEEECcccC
Confidence 999999999998888888999999999999998877643 3455544333 58999999999986
No 205
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.69 E-value=2.8e-16 Score=153.70 Aligned_cols=164 Identities=15% Similarity=0.134 Sum_probs=107.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC--CCCC-----------------------------CCCcccceeEEEEEEEeCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG--SSFS-----------------------------RPSQTIGCTVGVKHITYGS 67 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~--~~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 67 (333)
...++|+++|..++|||||+.+|+.. .+.. +...+++.+.....+..
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-- 82 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-- 82 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc--
Confidence 34579999999999999999999852 2110 11223344444444433
Q ss_pred CCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHH-HHHHHHhcCCCCCCCCCCC
Q 019959 68 SGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQK-WAVEIATSGTFSAPLASGG 146 (333)
Q Consensus 68 ~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~-~~~~i~~~~~~~~~~~~~~ 146 (333)
..+.+.||||+|+++|.......+..+|++|+|+|+++.+++...+. +...+....
T Consensus 83 -------------~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~---------- 139 (426)
T TIGR00483 83 -------------DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL---------- 139 (426)
T ss_pred -------------CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc----------
Confidence 35789999999999987766667889999999999999864422111 111222221
Q ss_pred CCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHH
Q 019959 147 PGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVM 223 (333)
Q Consensus 147 ~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~ 223 (333)
...|+|||+||+|+.... .....++.++++++++..++.. ..+++++ +||++|.|+++.+.
T Consensus 140 ---~~~~iIVviNK~Dl~~~~--~~~~~~~~~ei~~~~~~~g~~~--~~~~~i~---------iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 140 ---GINQLIVAINKMDSVNYD--EEEFEAIKKEVSNLIKKVGYNP--DTVPFIP---------ISAWNGDNVIKKSE 200 (426)
T ss_pred ---CCCeEEEEEEChhccCcc--HHHHHHHHHHHHHHHHHcCCCc--ccceEEE---------eecccccccccccc
Confidence 135799999999997421 1111122366777777777531 1257777 99999999987443
No 206
>COG1159 Era GTPase [General function prediction only]
Probab=99.68 E-value=6.1e-16 Score=140.25 Aligned_cols=157 Identities=17% Similarity=0.178 Sum_probs=98.6
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC--CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch---
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSF--SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE--- 94 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e--- 94 (333)
+.--|+|||.||||||||+|++++.... ..-.+|.- .. .+-+.. ....++.+.||||-.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR-~~-I~GI~t--------------~~~~QiIfvDTPGih~pk 68 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTR-NR-IRGIVT--------------TDNAQIIFVDTPGIHKPK 68 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhh-hh-eeEEEE--------------cCCceEEEEeCCCCCCcc
Confidence 3457999999999999999999988652 22223311 11 111211 346779999999922
Q ss_pred -----hhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC
Q 019959 95 -----RYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT 169 (333)
Q Consensus 95 -----~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r 169 (333)
.........+..+|+++||+|+++...-. ....++.++.. +.|++++.||+|.....
T Consensus 69 ~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~-d~~il~~lk~~---------------~~pvil~iNKID~~~~~-- 130 (298)
T COG1159 69 HALGELMNKAARSALKDVDLILFVVDADEGWGPG-DEFILEQLKKT---------------KTPVILVVNKIDKVKPK-- 130 (298)
T ss_pred hHHHHHHHHHHHHHhccCcEEEEEEeccccCCcc-HHHHHHHHhhc---------------CCCeEEEEEccccCCcH--
Confidence 22333444578999999999999854422 12344444442 57999999999988762
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.....+...+... .+|-+. +.+||++|.|++.+.+.+...+
T Consensus 131 --------~~l~~~~~~~~~~-----~~f~~i------vpiSA~~g~n~~~L~~~i~~~L 171 (298)
T COG1159 131 --------TVLLKLIAFLKKL-----LPFKEI------VPISALKGDNVDTLLEIIKEYL 171 (298)
T ss_pred --------HHHHHHHHHHHhh-----CCcceE------EEeeccccCCHHHHHHHHHHhC
Confidence 1112222222211 122222 2299999999988887776543
No 207
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.68 E-value=7.5e-16 Score=155.39 Aligned_cols=175 Identities=19% Similarity=0.204 Sum_probs=105.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC----CcccceeEEEEEEEeCCCCCCCCccCCCCCceE---EEEEEeCCCch
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRP----SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDF---FVELWDISGHE 94 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~i~Dt~G~e 94 (333)
..|+|+|..++|||||+++|.+..+.... .+++|.++..........+. ..... ...+ .+.||||||++
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGP---LKKPL-PIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccce---ecccc-ccccccCCEEEEECCChH
Confidence 47999999999999999999876543322 23444433321110000000 00000 0000 27899999999
Q ss_pred hhhhhHHhhccCCcEEEEEEECCC---cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc-
Q 019959 95 RYKDCRSILYSQINGVIFVHDLSQ---RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR- 170 (333)
Q Consensus 95 ~~~~~~~~~~~~ad~vIlV~D~s~---~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~- 170 (333)
.|..++...+..+|++|+|+|+++ +.+++.+.. +... ++|+++|+||+|+.......
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~~---------------~vpiIvviNK~D~~~~~~~~~ 143 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKRR---------------KTPFVVAANKIDRIPGWKSTE 143 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHHc---------------CCCEEEEEECcCCchhhhhhc
Confidence 999998888899999999999998 555655532 2222 68999999999985321000
Q ss_pred ---------cCcccH-------HHHHHHHHHHcCCCC--------CCcCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 171 ---------GSSGNL-------VDAARQWVEKQGLLP--------SSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 171 ---------v~~~~~-------~~~~~~~~~~~~~~~--------~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
....++ ..+...+....|+.. +..++++++ +||++|.|++++++.+.
T Consensus 144 ~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivp---------iSA~tGeGi~dLl~~i~ 214 (586)
T PRK04004 144 DAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVP---------VSAKTGEGIPDLLMVLA 214 (586)
T ss_pred CchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEee---------ccCCCCCChHHHHHHHH
Confidence 000000 011112223344321 223466777 99999999999888876
Q ss_pred HH
Q 019959 227 RM 228 (333)
Q Consensus 227 ~~ 228 (333)
..
T Consensus 215 ~~ 216 (586)
T PRK04004 215 GL 216 (586)
T ss_pred HH
Confidence 43
No 208
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.67 E-value=8.5e-16 Score=155.77 Aligned_cols=156 Identities=18% Similarity=0.182 Sum_probs=105.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC---CCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG---SSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
-|+++|..++|||||+++|++. .+..+....++.+.....+... ....+.||||||+++|...
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~--------------~g~~i~~IDtPGhe~fi~~ 67 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP--------------DGRVLGFIDVPGHEKFLSN 67 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC--------------CCcEEEEEECCCHHHHHHH
Confidence 5899999999999999999953 3333433344444433333322 1234899999999999777
Q ss_pred HHhhccCCcEEEEEEECCCcc---cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcCCCCccCCccCccc
Q 019959 100 RSILYSQINGVIFVHDLSQRR---TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~---S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~Dl~~~~~r~v~~~~ 175 (333)
....+..+|++++|+|+++.. +.+.+ ..+... ++| +|||+||+|+.++. ... .
T Consensus 68 m~~g~~~~D~~lLVVda~eg~~~qT~ehl----~il~~l---------------gi~~iIVVlNKiDlv~~~--~~~--~ 124 (614)
T PRK10512 68 MLAGVGGIDHALLVVACDDGVMAQTREHL----AILQLT---------------GNPMLTVALTKADRVDEA--RIA--E 124 (614)
T ss_pred HHHHhhcCCEEEEEEECCCCCcHHHHHHH----HHHHHc---------------CCCeEEEEEECCccCCHH--HHH--H
Confidence 777788999999999998743 33333 223222 355 57999999997532 110 1
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+.+++..+....++. ..|+++ +||++|.|++++++.+.+.
T Consensus 125 v~~ei~~~l~~~~~~----~~~ii~---------VSA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 125 VRRQVKAVLREYGFA----EAKLFV---------TAATEGRGIDALREHLLQL 164 (614)
T ss_pred HHHHHHHHHHhcCCC----CCcEEE---------EeCCCCCCCHHHHHHHHHh
Confidence 124455555555542 356777 9999999999988888654
No 209
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.66 E-value=7.4e-16 Score=150.76 Aligned_cols=163 Identities=15% Similarity=0.222 Sum_probs=101.8
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCC--C-----------------------------CCCcccceeEEEEEEEeCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSF--S-----------------------------RPSQTIGCTVGVKHITYGS 67 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~--~-----------------------------~~~~t~~~~~~~~~~~~~~ 67 (333)
...++|+|+|..++|||||+++|+...-. . +....++.+.....+.
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~--- 80 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE--- 80 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe---
Confidence 45689999999999999999999843110 0 0012222233222332
Q ss_pred CCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCC
Q 019959 68 SGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGG 146 (333)
Q Consensus 68 ~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~ 146 (333)
...+.+.||||||+++|.......+..+|++|+|+|+++...+... ..++..+....
T Consensus 81 ------------~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~---------- 138 (425)
T PRK12317 81 ------------TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG---------- 138 (425)
T ss_pred ------------cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC----------
Confidence 2457899999999998876555557899999999999973222221 12222222221
Q ss_pred CCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHH
Q 019959 147 PGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVM 223 (333)
Q Consensus 147 ~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~ 223 (333)
..|++||+||+|+....... ..++.+++.++++..++.. +.+++++ +||++|.|+++..+
T Consensus 139 ----~~~iivviNK~Dl~~~~~~~--~~~~~~~i~~~l~~~g~~~--~~~~ii~---------iSA~~g~gi~~~~~ 198 (425)
T PRK12317 139 ----INQLIVAINKMDAVNYDEKR--YEEVKEEVSKLLKMVGYKP--DDIPFIP---------VSAFEGDNVVKKSE 198 (425)
T ss_pred ----CCeEEEEEEccccccccHHH--HHHHHHHHHHHHHhhCCCc--CcceEEE---------eecccCCCcccccc
Confidence 24699999999997521000 0112355666666666421 1256777 99999999987543
No 210
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.66 E-value=1.8e-15 Score=144.33 Aligned_cols=149 Identities=17% Similarity=0.137 Sum_probs=104.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh----
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY---- 96 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~---- 96 (333)
..|+|||.||||||||+|||++.+. +....+.++.|.......+. ...+.+.||+|.+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~---------------~~~f~lIDTgGl~~~~~~~ 68 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWL---------------GREFILIDTGGLDDGDEDE 68 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEc---------------CceEEEEECCCCCcCCchH
Confidence 3799999999999999999997754 34555555666666666664 234999999995422
Q ss_pred -----hhhHHhhccCCcEEEEEEECCCcccHHH--HHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC
Q 019959 97 -----KDCRSILYSQINGVIFVHDLSQRRTKTS--LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT 169 (333)
Q Consensus 97 -----~~~~~~~~~~ad~vIlV~D~s~~~S~~~--l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r 169 (333)
.......+..||++|||+|....-+-.+ +..|+. .. +.|+|||.||+|-...
T Consensus 69 l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr---~~---------------~kpviLvvNK~D~~~~--- 127 (444)
T COG1160 69 LQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILR---RS---------------KKPVILVVNKIDNLKA--- 127 (444)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH---hc---------------CCCEEEEEEcccCchh---
Confidence 2223345779999999999987554332 333433 22 6899999999998743
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+....-...+|+-. .+. +||..|.|+.++++.+.+.+
T Consensus 128 --------e~~~~efyslG~g~------~~~---------ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 128 --------EELAYEFYSLGFGE------PVP---------ISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred --------hhhHHHHHhcCCCC------ceE---------eehhhccCHHHHHHHHHhhc
Confidence 22222234567543 333 99999999999999888765
No 211
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.65 E-value=3.9e-15 Score=134.47 Aligned_cols=114 Identities=19% Similarity=0.193 Sum_probs=81.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-C------------C-C--CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSF-S------------R-P--SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVE 86 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~-~------------~-~--~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 86 (333)
+|+|+|..|+|||||+++|+...-. . . . ....+.++......+. ...+++.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~-------------~~~~~i~ 67 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQ-------------WEDTKVN 67 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEE-------------ECCEEEE
Confidence 4899999999999999999853110 0 0 0 0111222323333322 3467899
Q ss_pred EEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC
Q 019959 87 LWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 165 (333)
Q Consensus 87 i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~ 165 (333)
+|||||+.+|......+++.+|++|+|+|+++.... ....|+..+... ++|+++|+||+|+..
T Consensus 68 liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---------------~~P~iivvNK~D~~~ 130 (237)
T cd04168 68 LIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---------------NIPTIIFVNKIDRAG 130 (237)
T ss_pred EEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---------------CCCEEEEEECccccC
Confidence 999999999988888899999999999999987654 334555555544 589999999999874
No 212
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.65 E-value=7.8e-16 Score=149.30 Aligned_cols=170 Identities=18% Similarity=0.190 Sum_probs=118.9
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....++|+|||+.|||||||+-.++..+|...-++.... ..+..+ ..-..+...|.|++..+.-+
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~----i~IPad-----------vtPe~vpt~ivD~ss~~~~~ 70 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPR----ILIPAD-----------VTPENVPTSIVDTSSDSDDR 70 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCc----cccCCc-----------cCcCcCceEEEecccccchh
Confidence 345689999999999999999999999987765543221 111111 11234448899998766655
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
.....-+++||++.+||+++++.+.+.+ .+|+..++.... +..++||||||||+|+.......+.
T Consensus 71 ~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~----------~~~~~PVILvGNK~d~~~~~~~s~e---- 136 (625)
T KOG1707|consen 71 LCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFG----------DYHETPVILVGNKSDNGDNENNSDE---- 136 (625)
T ss_pred HHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccC----------CCccCCEEEEeeccCCccccccchh----
Confidence 5555668999999999999999999999 579999988752 1248999999999999876322111
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.....+...+. |.-..+| |||++-.++.++|.-..+.++.
T Consensus 137 -~~~~pim~~f~-----EiEtcie---------cSA~~~~n~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 137 -VNTLPIMIAFA-----EIETCIE---------CSALTLANVSELFYYAQKAVIH 176 (625)
T ss_pred -HHHHHHHHHhH-----HHHHHHh---------hhhhhhhhhHhhhhhhhheeec
Confidence 11222222221 1123566 9999999999988877666554
No 213
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.64 E-value=3e-15 Score=143.10 Aligned_cols=156 Identities=21% Similarity=0.192 Sum_probs=107.8
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGS-SFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
...-+||+|+|.||||||||+|.|++.+ -+....+..+.|+....+.++ .+.+.|.||+|..+-
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~---------------G~pv~l~DTAGiRet 278 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLN---------------GIPVRLVDTAGIRET 278 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEEC---------------CEEEEEEecCCcccC
Confidence 3445799999999999999999999764 455666666788888888886 578999999994332
Q ss_pred hh--------hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC
Q 019959 97 KD--------CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 168 (333)
Q Consensus 97 ~~--------~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~ 168 (333)
.. .....+..||.+++|+|.+.+.+-..... +. . . ..+.|+++|.||+||..+..
T Consensus 279 ~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~-~~-~--~-------------~~~~~~i~v~NK~DL~~~~~ 341 (454)
T COG0486 279 DDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLAL-IE-L--L-------------PKKKPIIVVLNKADLVSKIE 341 (454)
T ss_pred ccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHH-HH-h--c-------------ccCCCEEEEEechhcccccc
Confidence 21 22345789999999999999744333211 11 1 1 13689999999999987621
Q ss_pred CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 169 TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 169 r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
...+ +.. .+.+++. +||++|.|++.+.+.+.+.+...
T Consensus 342 -----------~~~~--~~~-----~~~~~i~---------iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 342 -----------LESE--KLA-----NGDAIIS---------ISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred -----------cchh--hcc-----CCCceEE---------EEecCccCHHHHHHHHHHHHhhc
Confidence 1111 111 1134555 99999988888877776655443
No 214
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.63 E-value=1.9e-15 Score=146.94 Aligned_cols=179 Identities=16% Similarity=0.158 Sum_probs=102.2
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCC---CC--CcccceeEEEEEEE----eCCCC--CCCCccCC---CCCceEE
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFS---RP--SQTIGCTVGVKHIT----YGSSG--SSSNSIKG---DSERDFF 84 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~---~~--~~t~~~~~~~~~~~----~~~~~--~~~~~i~~---~~~~~~~ 84 (333)
...++|+++|..++|||||+++|.+..... +. ..|+.+.+...... ++.+. .+....+. .......
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 356899999999999999999997532111 11 11122211110000 00000 00000000 0012467
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
+.+|||||+++|.......+..+|++|+|+|+++..........+..+...+ ..|+++|+||+|+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--------------i~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--------------IKNIVIVQNKIDLV 147 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--------------CCeEEEEEEccccC
Confidence 9999999999998887777888999999999996431111122222232221 24689999999997
Q ss_pred CccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 165 AKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 165 ~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
..+.... ..+++..+.+... ...+|+++ +||++|.|++++++.|...
T Consensus 148 ~~~~~~~----~~~~i~~~l~~~~----~~~~~ii~---------vSA~~g~gi~~L~e~L~~~ 194 (406)
T TIGR03680 148 SKEKALE----NYEEIKEFVKGTV----AENAPIIP---------VSALHNANIDALLEAIEKF 194 (406)
T ss_pred CHHHHHH----HHHHHHhhhhhcc----cCCCeEEE---------EECCCCCChHHHHHHHHHh
Confidence 5421100 0133333333221 12367777 9999999998888877654
No 215
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.63 E-value=2.2e-15 Score=146.47 Aligned_cols=177 Identities=19% Similarity=0.182 Sum_probs=98.8
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCC------cccceeEEEEEEEe------CCCCCCCCccC--C-CCCceEE
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPS------QTIGCTVGVKHITY------GSSGSSSNSIK--G-DSERDFF 84 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~------~t~~~~~~~~~~~~------~~~~~~~~~i~--~-~~~~~~~ 84 (333)
..++|+++|..++|||||+.+|.+.. ..... .|+...+....+.. +..-.+..... + .......
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~-~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVW-TDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCee-cccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 34899999999999999999996531 11111 12221111101100 00000000000 0 0011367
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl 163 (333)
+.||||||+++|..........+|++|+|+|+++.. .-+....+ ..+.... ..|+++|+||+|+
T Consensus 87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~~l~~~~--------------i~~iiVVlNK~Dl 151 (411)
T PRK04000 87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-MALDIIG--------------IKNIVIVQNKIDL 151 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHHHHcC--------------CCcEEEEEEeecc
Confidence 999999999988766555566789999999999653 22222111 1222221 2368999999999
Q ss_pred CCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 164 AAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 164 ~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+..... +..+++..+++... ...+++++ +||++|.|++++++.|...+
T Consensus 152 ~~~~~~~----~~~~~i~~~l~~~~----~~~~~ii~---------vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 152 VSKERAL----ENYEQIKEFVKGTV----AENAPIIP---------VSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred ccchhHH----HHHHHHHHHhcccc----CCCCeEEE---------EECCCCcCHHHHHHHHHHhC
Confidence 7642110 00133333333221 12356777 99999999988888776543
No 216
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.63 E-value=4.4e-15 Score=122.38 Aligned_cols=135 Identities=19% Similarity=0.310 Sum_probs=94.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC----chhhhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG----HERYKD 98 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G----~e~~~~ 98 (333)
||+|||+.|+|||||+++|.+... .+..|..+.+. =.+.|||| ...|..
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~-------------------------~~~IDTPGEyiE~~~~y~ 55 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY-------------------------DNTIDTPGEYIENPRFYH 55 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec-------------------------ccEEECChhheeCHHHHH
Confidence 899999999999999999998755 33333233221 24579999 233333
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
.......+||+|++|.|++++.+.- -..+... .+.|+|-|.||+|+..++ .. .+
T Consensus 56 aLi~ta~dad~V~ll~dat~~~~~~-----pP~fa~~--------------f~~pvIGVITK~Dl~~~~-~~------i~ 109 (143)
T PF10662_consen 56 ALIVTAQDADVVLLLQDATEPRSVF-----PPGFASM--------------FNKPVIGVITKIDLPSDD-AN------IE 109 (143)
T ss_pred HHHHHHhhCCEEEEEecCCCCCccC-----Cchhhcc--------------cCCCEEEEEECccCccch-hh------HH
Confidence 3334456999999999999876421 1111111 267999999999999321 11 47
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKF 225 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l 225 (333)
.++++.+..|+.. .|+ +|+.+|+|++++.+.|
T Consensus 110 ~a~~~L~~aG~~~------if~---------vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 110 RAKKWLKNAGVKE------IFE---------VSAVTGEGIEELKDYL 141 (143)
T ss_pred HHHHHHHHcCCCC------eEE---------EECCCCcCHHHHHHHH
Confidence 7889999999863 355 9999999998887765
No 217
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.62 E-value=4.1e-15 Score=132.79 Aligned_cols=156 Identities=15% Similarity=0.176 Sum_probs=93.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-C------------------------------CCCcccceeEEEEEEEeCCCCCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSF-S------------------------------RPSQTIGCTVGVKHITYGSSGSS 71 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~-~------------------------------~~~~t~~~~~~~~~~~~~~~~~~ 71 (333)
+|+|+|..++|||||+.+|+...-. . +....+..+.....+.+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~------ 74 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET------ 74 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee------
Confidence 4899999999999999999732100 0 00111122222222322
Q ss_pred CCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcc-------cHHHHHHHHHHHHhcCCCCCCCCC
Q 019959 72 SNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR-------TKTSLQKWAVEIATSGTFSAPLAS 144 (333)
Q Consensus 72 ~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~-------S~~~l~~~~~~i~~~~~~~~~~~~ 144 (333)
..+.+.+|||+|+..|.......+..+|++|+|+|+++.. ..+....|. ......
T Consensus 75 ---------~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~~-------- 136 (219)
T cd01883 75 ---------EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTLG-------- 136 (219)
T ss_pred ---------CCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHcC--------
Confidence 3578999999999888776666778899999999999852 112222222 222221
Q ss_pred CCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHH
Q 019959 145 GGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDK 219 (333)
Q Consensus 145 ~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~ 219 (333)
..|+|+|+||+|+...........++.++++.+.+..++.. ..+++++ +||++|.|++
T Consensus 137 ------~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~--~~~~ii~---------iSA~tg~gi~ 194 (219)
T cd01883 137 ------VKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNP--KDVPFIP---------ISGLTGDNLI 194 (219)
T ss_pred ------CCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCc--CCceEEE---------eecCcCCCCC
Confidence 35899999999997321001111112233444445555321 1356777 9999998876
No 218
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.62 E-value=8.6e-15 Score=131.08 Aligned_cols=128 Identities=23% Similarity=0.289 Sum_probs=76.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcc------------cceeEE--EEEEEeCCCCC--------CCCc-cCCCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQT------------IGCTVG--VKHITYGSSGS--------SSNS-IKGDS 79 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t------------~~~~~~--~~~~~~~~~~~--------~~~~-i~~~~ 79 (333)
||+++|+.++|||||+.+|+.+.+....... .|.+.. ...+.++..+. +... .....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999976653311100 011000 00111110000 0000 00011
Q ss_pred CceEEEEEEeCCCchhhhhhHHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEE
Q 019959 80 ERDFFVELWDISGHERYKDCRSILYS--QINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVI 157 (333)
Q Consensus 80 ~~~~~l~i~Dt~G~e~~~~~~~~~~~--~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivV 157 (333)
.....+.+.||||+++|.......+. .+|++++|+|+.....-. ...++..+... ++|+++|
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~~---------------~ip~ivv 144 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALAL---------------NIPVFVV 144 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHHc---------------CCCEEEE
Confidence 22457899999999998765544443 689999999998765422 23444444444 5899999
Q ss_pred eeCcCCCCc
Q 019959 158 GNKADVAAK 166 (333)
Q Consensus 158 gNK~Dl~~~ 166 (333)
.||+|+...
T Consensus 145 vNK~D~~~~ 153 (224)
T cd04165 145 VTKIDLAPA 153 (224)
T ss_pred EECccccCH
Confidence 999998654
No 219
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.62 E-value=1.8e-14 Score=126.28 Aligned_cols=155 Identities=23% Similarity=0.259 Sum_probs=100.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-------CC-------CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEE
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSS-------FS-------RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVE 86 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~-------~~-------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 86 (333)
+++|+++|..++|||||+++|++... .. .....-|.+.....+.+. .....+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-------------~~~~~i~ 68 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYE-------------TANRHYA 68 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEec-------------CCCeEEE
Confidence 57999999999999999999985310 00 000112333333333332 2356789
Q ss_pred EEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcCCCC
Q 019959 87 LWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAA 165 (333)
Q Consensus 87 i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~Dl~~ 165 (333)
+.||||+.+|.......+..+|++|+|+|++....-. ....+..+... ++| +|+|.||+|+..
T Consensus 69 ~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~---------------~~~~iIvviNK~D~~~ 132 (195)
T cd01884 69 HVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV---------------GVPYIVVFLNKADMVD 132 (195)
T ss_pred EEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---------------CCCcEEEEEeCCCCCC
Confidence 9999999988777777788999999999998754322 22333444444 466 788999999964
Q ss_pred ccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCH
Q 019959 166 KEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYD 218 (333)
Q Consensus 166 ~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v 218 (333)
+. + ....+.+++..+...+|+.. .++|++. +||++|.|.
T Consensus 133 ~~--~-~~~~~~~~i~~~l~~~g~~~--~~v~iip---------iSa~~g~n~ 171 (195)
T cd01884 133 DE--E-LLELVEMEVRELLSKYGFDG--DNTPIVR---------GSALKALEG 171 (195)
T ss_pred cH--H-HHHHHHHHHHHHHHHhcccc--cCCeEEE---------eeCccccCC
Confidence 31 1 11112345666666666521 1367777 999999885
No 220
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=3.8e-14 Score=122.11 Aligned_cols=165 Identities=21% Similarity=0.306 Sum_probs=114.5
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC--
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG-- 92 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G-- 92 (333)
.-|.....-|+++|.+|||||||+|+|++..-......|.|.+.....+.+++ . +.+.|.||
T Consensus 18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~-------------~---~~lVDlPGYG 81 (200)
T COG0218 18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD-------------E---LRLVDLPGYG 81 (200)
T ss_pred hCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC-------------c---EEEEeCCCcc
Confidence 44556667999999999999999999999876566666778877777777752 2 88999999
Q ss_pred --------chhhhhhHHhhcc---CCcEEEEEEECCCcccHHH--HHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEee
Q 019959 93 --------HERYKDCRSILYS---QINGVIFVHDLSQRRTKTS--LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 159 (333)
Q Consensus 93 --------~e~~~~~~~~~~~---~ad~vIlV~D~s~~~S~~~--l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgN 159 (333)
.+....+...|++ +..++++++|+...-.-.+ +-.|+.+ . ++|++||+|
T Consensus 82 yAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~---~---------------~i~~~vv~t 143 (200)
T COG0218 82 YAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE---L---------------GIPVIVVLT 143 (200)
T ss_pred cccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH---c---------------CCCeEEEEE
Confidence 4555566666665 4678899999987655433 2344443 3 799999999
Q ss_pred CcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 160 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 160 K~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
|+|......+ .......++.+++.+-...+ + +..|+.++.|++++-..|.+.+.
T Consensus 144 K~DKi~~~~~-------~k~l~~v~~~l~~~~~~~~~-~---------~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 144 KADKLKKSER-------NKQLNKVAEELKKPPPDDQW-V---------VLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred ccccCChhHH-------HHHHHHHHHHhcCCCCccce-E---------EEEecccccCHHHHHHHHHHHhh
Confidence 9999875311 12334455555543211101 2 23788899888888888877653
No 221
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=9.1e-16 Score=123.98 Aligned_cols=163 Identities=20% Similarity=0.300 Sum_probs=119.4
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
.+.+|.++|--|+|||+++.++.-++. ....||+|.. ...+.+ ++.++++||..|+...+..
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgev-vttkPtigfn--ve~v~y---------------KNLk~~vwdLggqtSirPy 78 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFN--VETVPY---------------KNLKFQVWDLGGQTSIRPY 78 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcC--cccccc---------------ccccceeeEccCcccccHH
Confidence 678999999999999999999976655 4566777754 344443 4677999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
++.||.+.|++|+|+|.+|++........+..+.... ...+..++|++||.|.... ..
T Consensus 79 WRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~-----------eLq~a~llv~anKqD~~~~-----------~t 136 (182)
T KOG0072|consen 79 WRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEE-----------ELQHAKLLVFANKQDYSGA-----------LT 136 (182)
T ss_pred HHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccH-----------hhcCceEEEEeccccchhh-----------hh
Confidence 9999999999999999999987655544443333321 1235778999999998764 22
Q ss_pred HHHHHHHcCCCCCCc-CCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSE-ELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~-~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
..+..+.+|+..... ....|+ +||.+|.|++..++++.+-+..
T Consensus 137 ~~E~~~~L~l~~Lk~r~~~Iv~---------tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 137 RSEVLKMLGLQKLKDRIWQIVK---------TSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred HHHHHHHhChHHHhhheeEEEe---------eccccccCCcHHHHHHHHHHhc
Confidence 233334444422111 134666 9999999999999999876643
No 222
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.61 E-value=8e-15 Score=139.85 Aligned_cols=160 Identities=18% Similarity=0.187 Sum_probs=108.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc-----
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGS-SFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH----- 93 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~----- 93 (333)
..+||+|||.||||||||+|+|++.+ .+....+..+.|.-...++++ ...+.+.||+|.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~---------------~~~~~liDTAGiRrk~k 241 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERD---------------GRKYVLIDTAGIRRKGK 241 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEEC---------------CeEEEEEECCCCCcccc
Confidence 46899999999999999999999764 344445544555555666654 345789999993
Q ss_pred -----hhhhhhHH-hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc
Q 019959 94 -----ERYKDCRS-ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE 167 (333)
Q Consensus 94 -----e~~~~~~~-~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~ 167 (333)
|.|..... ..+..+|++++|.|++.+-+-+.. .....+.+. ..++|+|.||.|+.+.+
T Consensus 242 i~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~~---------------g~~~vIvvNKWDl~~~~ 305 (444)
T COG1160 242 ITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDL-RIAGLIEEA---------------GRGIVIVVNKWDLVEED 305 (444)
T ss_pred cccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHHc---------------CCCeEEEEEccccCCch
Confidence 33433222 246789999999999998765543 344444444 57899999999998752
Q ss_pred CCccCcccHHHHH-HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAA-RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 168 ~r~v~~~~~~~~~-~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.... ++. .++-.++....| .|.+. +||++|.++..+|+.+.+.
T Consensus 306 --~~~~----~~~k~~i~~~l~~l~~---a~i~~---------iSA~~~~~i~~l~~~i~~~ 349 (444)
T COG1160 306 --EATM----EEFKKKLRRKLPFLDF---APIVF---------ISALTGQGLDKLFEAIKEI 349 (444)
T ss_pred --hhHH----HHHHHHHHHHhccccC---CeEEE---------EEecCCCChHHHHHHHHHH
Confidence 2221 222 222233333322 34555 9999999999988887654
No 223
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.60 E-value=1.4e-14 Score=127.14 Aligned_cols=169 Identities=17% Similarity=0.199 Sum_probs=97.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccce-eEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh--
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGC-TVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD-- 98 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~-- 98 (333)
+||+|+|++|||||||+|+|++..+......+.+. ........+.. .....+.+|||+|......
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~------------~~~~~l~l~DtpG~~~~~~~~ 69 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH------------PKFPNVTLWDLPGIGSTAFPP 69 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec------------CCCCCceEEeCCCCCcccCCH
Confidence 69999999999999999999986553322222221 11111111110 1123589999999643211
Q ss_pred ---hHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC--cc-
Q 019959 99 ---CRSILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT--RG- 171 (333)
Q Consensus 99 ---~~~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r--~v- 171 (333)
+....+.++|++++|.|. +|... ..|+..+... ..|+++|+||+|+...... ..
T Consensus 70 ~~~l~~~~~~~~d~~l~v~~~----~~~~~d~~~~~~l~~~---------------~~~~ilV~nK~D~~~~~~~~~~~~ 130 (197)
T cd04104 70 DDYLEEMKFSEYDFFIIISST----RFSSNDVKLAKAIQCM---------------GKKFYFVRTKVDRDLSNEQRSKPR 130 (197)
T ss_pred HHHHHHhCccCcCEEEEEeCC----CCCHHHHHHHHHHHHh---------------CCCEEEEEecccchhhhhhccccc
Confidence 222336788999988432 23333 3566666655 4689999999999532111 00
Q ss_pred --CcccHHHHHHHHHH----HcCCCCCCcCCCccccCCCCCceeeeec--cCcCHHHHHHHHHHHHHHHHh
Q 019959 172 --SSGNLVDAARQWVE----KQGLLPSSEELPLTESFPGGGGLIAAAK--EARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 172 --~~~~~~~~~~~~~~----~~~~~~~~~~~p~~E~~~~~~~~~~SAk--~g~~v~~~~~~l~~~l~~~~~ 234 (333)
...++.++.++.+. ..+.. ..++|- +|+. .++++..+.+.+...|-....
T Consensus 131 ~~~~~~~l~~i~~~~~~~~~~~~~~----~p~v~~---------vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 131 SFNREQVLQEIRDNCLENLQEAGVS----EPPVFL---------VSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCC----CCCEEE---------EeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 11122333333333 22221 123444 9998 678999999998888876543
No 224
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.58 E-value=5.8e-14 Score=128.96 Aligned_cols=115 Identities=17% Similarity=0.283 Sum_probs=79.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC-CCCCC---------Ccc----------cceeEEEEEEEeCCCCCCCCccCCCCCce
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS-SFSRP---------SQT----------IGCTVGVKHITYGSSGSSSNSIKGDSERD 82 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~-~~~~~---------~~t----------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 82 (333)
+|+|+|..|+|||||+++|+... .+... ..+ -+.++......+. ...
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~-------------~~~ 70 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFE-------------YRD 70 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEe-------------eCC
Confidence 69999999999999999998431 11100 000 1222222222222 346
Q ss_pred EEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
+++++|||||+.+|......+++.+|++|+|+|+++..... ...++...... ++|+++++||+|
T Consensus 71 ~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~~---------------~~P~iivvNK~D 134 (267)
T cd04169 71 CVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRLR---------------GIPIITFINKLD 134 (267)
T ss_pred EEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHhc---------------CCCEEEEEECCc
Confidence 88999999999999887777889999999999998864322 23444444333 689999999999
Q ss_pred CCCc
Q 019959 163 VAAK 166 (333)
Q Consensus 163 l~~~ 166 (333)
+...
T Consensus 135 ~~~a 138 (267)
T cd04169 135 REGR 138 (267)
T ss_pred cCCC
Confidence 8754
No 225
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.57 E-value=3.8e-14 Score=126.60 Aligned_cols=143 Identities=16% Similarity=0.211 Sum_probs=89.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-CCC-------------CcccceeEEE--EEEEeCCCCCCCCccCCCCCceEEEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSF-SRP-------------SQTIGCTVGV--KHITYGSSGSSSNSIKGDSERDFFVE 86 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~-~~~-------------~~t~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~l~ 86 (333)
+|+|+|..++|||||+.+|+...-. ... ...-|.+... ..+.+...+ .. ..++..+.++
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~--~~---~~~~~~~~i~ 76 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEE--ED---KADGNEYLIN 76 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCc--cc---ccCCCceEEE
Confidence 6899999999999999999843211 000 0001111111 122222100 00 1125578999
Q ss_pred EEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 87 LWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 87 i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
||||||+++|......+++.+|++|+|||+++..+.+....|. .+... ++|+|||+||+|+...
T Consensus 77 iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~-~~~~~---------------~~p~ilviNKiD~~~~ 140 (222)
T cd01885 77 LIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLR-QALKE---------------RVKPVLVINKIDRLIL 140 (222)
T ss_pred EECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHH-HHHHc---------------CCCEEEEEECCCcchh
Confidence 9999999999999899999999999999999887666533333 33222 5799999999998633
Q ss_pred cCCccCcccHHHHHHHHHHHc
Q 019959 167 EGTRGSSGNLVDAARQWVEKQ 187 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~ 187 (333)
+ +.++..+.++...++.++.
T Consensus 141 e-~~~~~~~~~~~~~~ii~~~ 160 (222)
T cd01885 141 E-LKLSPEEAYQRLARIIEQV 160 (222)
T ss_pred h-hcCCHHHHHHHHHHHHHHH
Confidence 2 3444433334444444433
No 226
>PRK12735 elongation factor Tu; Reviewed
Probab=99.56 E-value=6.5e-14 Score=135.74 Aligned_cols=156 Identities=22% Similarity=0.265 Sum_probs=98.2
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC-------CCC-----C--CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEE
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG-------SSF-----S--RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFF 84 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~-------~~~-----~--~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (333)
...++|+++|..++|||||+++|++. .+. . .....-|.+.......+. .....
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~-------------~~~~~ 76 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYE-------------TANRH 76 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEc-------------CCCcE
Confidence 34589999999999999999999862 110 0 001122333333333332 23456
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEE-EEeeCcCC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYV-VIGNKADV 163 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pii-vVgNK~Dl 163 (333)
+.|+||||+++|.......+..+|++++|+|+.+...-+ ...++..+... ++|.+ +|.||+|+
T Consensus 77 i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~~---------------gi~~iivvvNK~Dl 140 (396)
T PRK12735 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV---------------GVPYIVVFLNKCDM 140 (396)
T ss_pred EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHHc---------------CCCeEEEEEEecCC
Confidence 899999999988776666788999999999998754322 22333344333 57755 67999999
Q ss_pred CCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcC
Q 019959 164 AAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY 217 (333)
Q Consensus 164 ~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~ 217 (333)
..... ....+.++++.+.+.+++.. +++|+++ +||++|.|
T Consensus 141 ~~~~~---~~~~~~~ei~~~l~~~~~~~--~~~~ii~---------~Sa~~g~n 180 (396)
T PRK12735 141 VDDEE---LLELVEMEVRELLSKYDFPG--DDTPIIR---------GSALKALE 180 (396)
T ss_pred cchHH---HHHHHHHHHHHHHHHcCCCc--CceeEEe---------cchhcccc
Confidence 74311 11112245666666665421 1366777 99999864
No 227
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.54 E-value=3.5e-13 Score=123.53 Aligned_cols=160 Identities=20% Similarity=0.191 Sum_probs=106.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCC--CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc---
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSF--SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH--- 93 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~--- 93 (333)
+....|+|.|.||||||||++++++.+.. ..+..|-++.+ -++.+ ....+++.||||.
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~v--Ghfe~---------------~~~R~QvIDTPGlLDR 228 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHV--GHFER---------------GYLRIQVIDTPGLLDR 228 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeE--eeeec---------------CCceEEEecCCcccCC
Confidence 45568999999999999999999977543 33334444333 33332 3457999999991
Q ss_pred --hhhhhh---HHhhcc-CCcEEEEEEECCCcc--cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC
Q 019959 94 --ERYKDC---RSILYS-QINGVIFVHDLSQRR--TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 165 (333)
Q Consensus 94 --e~~~~~---~~~~~~-~ad~vIlV~D~s~~~--S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~ 165 (333)
++.+.+ .-..++ =+++|+|+||.|... +.+.-..++.++.... +.|+++|.||+|+.+
T Consensus 229 Pl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--------------~~p~v~V~nK~D~~~ 294 (346)
T COG1084 229 PLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--------------KAPIVVVINKIDIAD 294 (346)
T ss_pred ChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--------------CCCeEEEEecccccc
Confidence 111111 111223 368999999998754 5666667888888874 589999999999986
Q ss_pred ccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 166 KEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 166 ~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.+. .+++......-|... ... +++..+.+++.+.+.+.....+.
T Consensus 295 ~e~--------~~~~~~~~~~~~~~~------~~~---------~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 295 EEK--------LEEIEASVLEEGGEE------PLK---------ISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred hhH--------HHHHHHHHHhhcccc------ccc---------eeeeehhhHHHHHHHHHHHhhch
Confidence 521 244454455555332 222 89999988888777777665544
No 228
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.54 E-value=7.4e-14 Score=137.00 Aligned_cols=162 Identities=15% Similarity=0.255 Sum_probs=105.9
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCC--CC---------------------------CCCcccceeEEEEEEEeCCCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSS--FS---------------------------RPSQTIGCTVGVKHITYGSSG 69 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~--~~---------------------------~~~~t~~~~~~~~~~~~~~~~ 69 (333)
..+++|+++|..++|||||+-+|+...- .. .....-|.++......+.
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~--- 81 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFE--- 81 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEec---
Confidence 3457999999999999999999974210 00 000011222222222222
Q ss_pred CCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHH-------HHHHHHHHHHhcCCCCCCC
Q 019959 70 SSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKT-------SLQKWAVEIATSGTFSAPL 142 (333)
Q Consensus 70 ~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~-------~l~~~~~~i~~~~~~~~~~ 142 (333)
.....+.|.|+||+++|.......+..+|++|+|+|+++. .|+ .....+..+...
T Consensus 82 ----------~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~------- 143 (447)
T PLN00043 82 ----------TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL------- 143 (447)
T ss_pred ----------CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc-------
Confidence 3467899999999999998888889999999999999873 332 233333333333
Q ss_pred CCCCCCCCCC-cEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHH
Q 019959 143 ASGGPGGLPV-PYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKE 220 (333)
Q Consensus 143 ~~~~~~~~~~-PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~ 220 (333)
++ ++||++||+|+.+.......-.++.++++.++++.|+.. ++++|++ +||++|.|+.+
T Consensus 144 --------gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~--~~~~~ip---------iSa~~G~ni~~ 203 (447)
T PLN00043 144 --------GVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNP--DKIPFVP---------ISGFEGDNMIE 203 (447)
T ss_pred --------CCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCc--ccceEEE---------Eeccccccccc
Confidence 46 478899999986321111122334577888888888642 2367888 99999999854
No 229
>PRK12736 elongation factor Tu; Reviewed
Probab=99.54 E-value=1.8e-13 Score=132.55 Aligned_cols=154 Identities=21% Similarity=0.250 Sum_probs=97.5
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCC-------CC-----C--CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEE
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGS-------SF-----S--RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFV 85 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~-------~~-----~--~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 85 (333)
..++|+++|..++|||||+++|++.. +. . .....-|.+.......+. .....+
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~-------------~~~~~i 77 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYE-------------TEKRHY 77 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEec-------------CCCcEE
Confidence 35799999999999999999998531 00 0 001122333333344443 234568
Q ss_pred EEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcCCC
Q 019959 86 ELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVA 164 (333)
Q Consensus 86 ~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~Dl~ 164 (333)
.|+||||+++|.......+..+|++|+|+|+++...-.. ..++..+... ++| +|||.||+|+.
T Consensus 78 ~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~---------------g~~~~IvviNK~D~~ 141 (394)
T PRK12736 78 AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV---------------GVPYLVVFLNKVDLV 141 (394)
T ss_pred EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc---------------CCCEEEEEEEecCCc
Confidence 899999999987766666788999999999987533222 2233334333 467 67899999997
Q ss_pred CccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCc
Q 019959 165 AKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR 216 (333)
Q Consensus 165 ~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~ 216 (333)
+... .. ..+.++...+.+..++.. ..+|++. +||++|.
T Consensus 142 ~~~~--~~-~~i~~~i~~~l~~~~~~~--~~~~ii~---------vSa~~g~ 179 (394)
T PRK12736 142 DDEE--LL-ELVEMEVRELLSEYDFPG--DDIPVIR---------GSALKAL 179 (394)
T ss_pred chHH--HH-HHHHHHHHHHHHHhCCCc--CCccEEE---------eeccccc
Confidence 4321 10 112245566666666421 1357777 9999984
No 230
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.53 E-value=2e-13 Score=132.27 Aligned_cols=155 Identities=21% Similarity=0.258 Sum_probs=98.2
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC-------CCC-----C--CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEE
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG-------SSF-----S--RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFF 84 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~-------~~~-----~--~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (333)
...++|+++|..++|||||+++|++. .+. . .....-|.+.....+.+. .....
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~-------------~~~~~ 76 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYE-------------TENRH 76 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEc-------------CCCEE
Confidence 45689999999999999999999732 010 0 001112333333444443 34567
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcE-EEEeeCcCC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY-VVIGNKADV 163 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pi-ivVgNK~Dl 163 (333)
+.||||||+++|..........+|++|+|+|+++....+.. ..+..+... ++|. |+|+||+|+
T Consensus 77 ~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~~---------------gi~~iIvvvNK~Dl 140 (394)
T TIGR00485 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQV---------------GVPYIVVFLNKCDM 140 (394)
T ss_pred EEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc---------------CCCEEEEEEEeccc
Confidence 89999999999976665667789999999999874332222 233333333 4665 468999999
Q ss_pred CCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCc
Q 019959 164 AAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR 216 (333)
Q Consensus 164 ~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~ 216 (333)
.+... . ...+.++++.+++..++.. ..+|+++ +||++|.
T Consensus 141 ~~~~~--~-~~~~~~~i~~~l~~~~~~~--~~~~ii~---------vSa~~g~ 179 (394)
T TIGR00485 141 VDDEE--L-LELVEMEVRELLSEYDFPG--DDTPIIR---------GSALKAL 179 (394)
T ss_pred CCHHH--H-HHHHHHHHHHHHHhcCCCc--cCccEEE---------Ccccccc
Confidence 75321 1 1112245666777666431 1267777 9999885
No 231
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.53 E-value=9e-14 Score=135.14 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=95.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCC--------------------------------CCcccceeEEEEEEEeCCC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSS-FSR--------------------------------PSQTIGCTVGVKHITYGSS 68 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~-~~~--------------------------------~~~t~~~~~~~~~~~~~~~ 68 (333)
++|+|+|..++|||||+.+|+...- ... ....+..+.....+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~---- 76 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFS---- 76 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEc----
Confidence 5899999999999999999974311 100 001111222222222
Q ss_pred CCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 019959 69 GSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPG 148 (333)
Q Consensus 69 ~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~ 148 (333)
....++.|+||||+++|.......+..+|++|+|+|++....-+....|. .+...+
T Consensus 77 -----------~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~~------------ 132 (406)
T TIGR02034 77 -----------TDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLLG------------ 132 (406)
T ss_pred -----------cCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHcC------------
Confidence 23457899999999999766666788999999999998754322222222 222221
Q ss_pred CCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHH
Q 019959 149 GLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKE 220 (333)
Q Consensus 149 ~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~ 220 (333)
..++|||.||+|+...+. .. ..++.++...+.+..++. ++++++ +||++|.|+++
T Consensus 133 --~~~iivviNK~D~~~~~~-~~-~~~i~~~~~~~~~~~~~~----~~~iip---------iSA~~g~ni~~ 187 (406)
T TIGR02034 133 --IRHVVLAVNKMDLVDYDE-EV-FENIKKDYLAFAEQLGFR----DVTFIP---------LSALKGDNVVS 187 (406)
T ss_pred --CCcEEEEEEecccccchH-HH-HHHHHHHHHHHHHHcCCC----CccEEE---------eecccCCCCcc
Confidence 235889999999975321 10 111223444445555542 356777 99999999875
No 232
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.52 E-value=1.6e-13 Score=126.70 Aligned_cols=137 Identities=15% Similarity=0.224 Sum_probs=85.9
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCC----------CCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEe
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSR----------PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWD 89 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~D 89 (333)
..++|+|+|.+|+|||||+|+|++..+... ...|++.+.....+..+ +..+.+.|||
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~-------------g~~~~l~iiD 69 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEEN-------------GVKLKLTVID 69 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEEC-------------CEEEEEEEEe
Confidence 358999999999999999999998876543 24454554444444433 5678899999
Q ss_pred CCCchhhh--------------------------hhHHhhcc--CCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCC
Q 019959 90 ISGHERYK--------------------------DCRSILYS--QINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSA 140 (333)
Q Consensus 90 t~G~e~~~--------------------------~~~~~~~~--~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~ 140 (333)
|+|-..+. ..+...+. ++|+++++++.+... +... ...+..+..
T Consensus 70 TpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~~------ 142 (276)
T cd01850 70 TPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLSK------ 142 (276)
T ss_pred cCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHhc------
Confidence 99932211 11112222 478888888877522 1111 122333321
Q ss_pred CCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCC
Q 019959 141 PLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLL 190 (333)
Q Consensus 141 ~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~ 190 (333)
.+|+++|+||+|+........ ..+.+++.++.+++.
T Consensus 143 ----------~v~vi~VinK~D~l~~~e~~~----~k~~i~~~l~~~~i~ 178 (276)
T cd01850 143 ----------RVNIIPVIAKADTLTPEELKE----FKQRIMEDIEEHNIK 178 (276)
T ss_pred ----------cCCEEEEEECCCcCCHHHHHH----HHHHHHHHHHHcCCc
Confidence 479999999999975422221 236677777777743
No 233
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.51 E-value=3e-13 Score=134.96 Aligned_cols=117 Identities=17% Similarity=0.259 Sum_probs=81.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcC-CCCC----------------C---CCcccceeEEEEEEEeCCCCCCCCccCCCCC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKG-SSFS----------------R---PSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~-~~~~----------------~---~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (333)
.-+|+|+|..++|||||+++|+.. ..+. . ....-|.++......+. .
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~-------------~ 76 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFP-------------Y 76 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEE-------------E
Confidence 449999999999999999999731 1100 0 00011333333333332 2
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
..+.+++|||||+++|......+++.+|++|+|+|+++...- ....++...... ++|+++++||
T Consensus 77 ~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~~---------------~iPiiv~iNK 140 (526)
T PRK00741 77 RDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRLR---------------DTPIFTFINK 140 (526)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHhc---------------CCCEEEEEEC
Confidence 457899999999999988777789999999999999886432 233444444333 6899999999
Q ss_pred cCCCCc
Q 019959 161 ADVAAK 166 (333)
Q Consensus 161 ~Dl~~~ 166 (333)
+|+...
T Consensus 141 ~D~~~a 146 (526)
T PRK00741 141 LDRDGR 146 (526)
T ss_pred Cccccc
Confidence 998653
No 234
>PRK13351 elongation factor G; Reviewed
Probab=99.51 E-value=3e-13 Score=139.84 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=83.8
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCC-------------C-------CCCcccceeEEEEEEEeCCCCCCCCccCCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSF-------------S-------RPSQTIGCTVGVKHITYGSSGSSSNSIKGD 78 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~-------------~-------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~ 78 (333)
....+|+|+|..++|||||+++|+...-. . ....|+... ...+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~--~~~~~~------------- 70 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESA--ATSCDW------------- 70 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccc--eEEEEE-------------
Confidence 34569999999999999999999853110 0 011121111 122222
Q ss_pred CCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEe
Q 019959 79 SERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 158 (333)
Q Consensus 79 ~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVg 158 (333)
..+.+.||||||+.+|......+++.+|++|+|+|+++.........|. .+... ++|+++|+
T Consensus 71 --~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~~---------------~~p~iivi 132 (687)
T PRK13351 71 --DNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADRY---------------GIPRLIFI 132 (687)
T ss_pred --CCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHhc---------------CCCEEEEE
Confidence 3578999999999999988888999999999999999988777665553 34333 58999999
Q ss_pred eCcCCCCc
Q 019959 159 NKADVAAK 166 (333)
Q Consensus 159 NK~Dl~~~ 166 (333)
||+|+...
T Consensus 133 NK~D~~~~ 140 (687)
T PRK13351 133 NKMDRVGA 140 (687)
T ss_pred ECCCCCCC
Confidence 99998754
No 235
>PLN03126 Elongation factor Tu; Provisional
Probab=99.51 E-value=3.2e-13 Score=133.23 Aligned_cols=158 Identities=18% Similarity=0.198 Sum_probs=101.6
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCC------CCC--------CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceE
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGS------SFS--------RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDF 83 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~------~~~--------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 83 (333)
....++|+++|..++|||||+++|++.. ... ......|.+.......+. ....
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~-------------~~~~ 144 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE-------------TENR 144 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe-------------cCCc
Confidence 4556899999999999999999999521 111 011112333322222232 2345
Q ss_pred EEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcC
Q 019959 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKAD 162 (333)
Q Consensus 84 ~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~D 162 (333)
.+.|+|+||+++|.......+..+|++|+|+|+.+...-+. ..++..+... ++| +|++.||+|
T Consensus 145 ~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~---------------gi~~iIvvvNK~D 208 (478)
T PLN03126 145 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV---------------GVPNMVVFLNKQD 208 (478)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---------------CCCeEEEEEeccc
Confidence 78999999999997777777889999999999987654333 3344444444 577 788999999
Q ss_pred CCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCH
Q 019959 163 VAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYD 218 (333)
Q Consensus 163 l~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v 218 (333)
+.+.+ .. .+.+.+++..+.+..|+.. .++|++. +||.+|.++
T Consensus 209 l~~~~--~~-~~~i~~~i~~~l~~~g~~~--~~~~~vp---------~Sa~~g~n~ 250 (478)
T PLN03126 209 QVDDE--EL-LELVELEVRELLSSYEFPG--DDIPIIS---------GSALLALEA 250 (478)
T ss_pred ccCHH--HH-HHHHHHHHHHHHHhcCCCc--CcceEEE---------EEccccccc
Confidence 97532 11 1222345666666665431 2367777 999988543
No 236
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.50 E-value=5.5e-13 Score=125.11 Aligned_cols=95 Identities=21% Similarity=0.199 Sum_probs=57.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCC------CcccceeEEEEEEEe---CCCCCCCCccCCCCCceEEEEEEeCCCc-
Q 019959 24 VLVVGDSGVGKTSLVNLIVKGSSFSRP------SQTIGCTVGVKHITY---GSSGSSSNSIKGDSERDFFVELWDISGH- 93 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~~~~~~~------~~t~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~l~i~Dt~G~- 93 (333)
|+|||.+|||||||+++|++..+.... .+++|..+....+.. +....-......+..+.+.++||||+|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999987653222 233333222111000 0000000000011124577999999996
Q ss_pred ---hhhhhhHHhh---ccCCcEEEEEEECCC
Q 019959 94 ---ERYKDCRSIL---YSQINGVIFVHDLSQ 118 (333)
Q Consensus 94 ---e~~~~~~~~~---~~~ad~vIlV~D~s~ 118 (333)
+++..+...+ +++||++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 5566665554 889999999999973
No 237
>CHL00071 tufA elongation factor Tu
Probab=99.49 E-value=9.2e-13 Score=128.24 Aligned_cols=157 Identities=20% Similarity=0.229 Sum_probs=99.9
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEE
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFS--------------RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFF 84 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (333)
...++|+++|..++|||||+++|++..-.. .....-|.+.......+. .....
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~-------------~~~~~ 76 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYE-------------TENRH 76 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEc-------------cCCeE
Confidence 345899999999999999999999641100 001112333333333332 23456
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcCC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADV 163 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~Dl 163 (333)
+.|.||||+.+|.......+..+|++++|+|+.....-+ ....+..+... ++| +|+|.||+|+
T Consensus 77 ~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~~~~~~---------------g~~~iIvvvNK~D~ 140 (409)
T CHL00071 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TKEHILLAKQV---------------GVPNIVVFLNKEDQ 140 (409)
T ss_pred EEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---------------CCCEEEEEEEccCC
Confidence 889999999988777777788999999999998754322 22333444443 578 7789999999
Q ss_pred CCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCH
Q 019959 164 AAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYD 218 (333)
Q Consensus 164 ~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v 218 (333)
.+... ..+.+.+++..+.+..++.. +.+|++. +||++|.|+
T Consensus 141 ~~~~~---~~~~~~~~l~~~l~~~~~~~--~~~~ii~---------~Sa~~g~n~ 181 (409)
T CHL00071 141 VDDEE---LLELVELEVRELLSKYDFPG--DDIPIVS---------GSALLALEA 181 (409)
T ss_pred CCHHH---HHHHHHHHHHHHHHHhCCCC--CcceEEE---------cchhhcccc
Confidence 75321 11112345555656555421 1367777 999999754
No 238
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.49 E-value=3.7e-13 Score=133.11 Aligned_cols=159 Identities=16% Similarity=0.128 Sum_probs=95.7
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCC-CCC------------C--------------------CcccceeEEEEEEEe
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSS-FSR------------P--------------------SQTIGCTVGVKHITY 65 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~------------~--------------------~~t~~~~~~~~~~~~ 65 (333)
...++|+|+|..++|||||+.+|+...- +.. . ...+.++.....+.
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~- 103 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS- 103 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec-
Confidence 4558999999999999999999984321 110 0 01112222222222
Q ss_pred CCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCC
Q 019959 66 GSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASG 145 (333)
Q Consensus 66 ~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~ 145 (333)
.....+.|+||||+++|.......+..+|++|+|+|++....-.....|. .+...+
T Consensus 104 --------------~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~~~lg--------- 159 (474)
T PRK05124 104 --------------TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IATLLG--------- 159 (474)
T ss_pred --------------cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HHHHhC---------
Confidence 23457899999999998765555578999999999998653221111221 122221
Q ss_pred CCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHH
Q 019959 146 GPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEA 221 (333)
Q Consensus 146 ~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~ 221 (333)
..++|||+||+|+...+ .-...++.++...+.+..+.. ...+++. +||++|.|+++.
T Consensus 160 -----~~~iIvvvNKiD~~~~~--~~~~~~i~~~l~~~~~~~~~~---~~~~iip---------vSA~~g~ni~~~ 216 (474)
T PRK05124 160 -----IKHLVVAVNKMDLVDYS--EEVFERIREDYLTFAEQLPGN---LDIRFVP---------LSALEGDNVVSQ 216 (474)
T ss_pred -----CCceEEEEEeeccccch--hHHHHHHHHHHHHHHHhcCCC---CCceEEE---------EEeecCCCcccc
Confidence 23689999999997432 111111223333344444421 1356666 999999999764
No 239
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.49 E-value=4.4e-13 Score=121.41 Aligned_cols=174 Identities=17% Similarity=0.137 Sum_probs=103.2
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--cccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc--
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPS--QTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH-- 93 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~-- 93 (333)
..+.+.|+|||.||||||||.|.+++.+...... .|..... .-. .......+.|+||||.
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~i-lgi---------------~ts~eTQlvf~DTPGlvs 132 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRI-LGI---------------ITSGETQLVFYDTPGLVS 132 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeee-eEE---------------EecCceEEEEecCCcccc
Confidence 4677899999999999999999999887643222 2212111 111 1145678999999991
Q ss_pred ----hhhhhh------HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC
Q 019959 94 ----ERYKDC------RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163 (333)
Q Consensus 94 ----e~~~~~------~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl 163 (333)
.++..+ -...+..||+|++|+|+++.....+. ..+..+..+. ++|-|+|.||.|.
T Consensus 133 ~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~ys--------------~ips~lvmnkid~ 197 (379)
T KOG1423|consen 133 KKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEEYS--------------KIPSILVMNKIDK 197 (379)
T ss_pred cchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHHh--------------cCCceeeccchhc
Confidence 122111 12346689999999999974433222 3444555553 6899999999997
Q ss_pred CCccC------CccCcccHHHHHHHHHHHcCCCC----CCcCCCc--cccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 164 AAKEG------TRGSSGNLVDAARQWVEKQGLLP----SSEELPL--TESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 164 ~~~~~------r~v~~~~~~~~~~~~~~~~~~~~----~~~~~p~--~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
....- .....+++...-.++..++...+ +...|.+ || -+|.+||++|.|++++-+.++.
T Consensus 198 ~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe-----~vF~vSaL~G~GikdlkqyLms 268 (379)
T KOG1423|consen 198 LKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFE-----RVFMVSALYGEGIKDLKQYLMS 268 (379)
T ss_pred chhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccce-----eEEEEecccccCHHHHHHHHHh
Confidence 65310 00111111122334444444333 1001111 22 2445999999888887777654
No 240
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.48 E-value=6.8e-13 Score=122.03 Aligned_cols=113 Identities=16% Similarity=0.262 Sum_probs=78.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCC------c------------ccceeEEEEEEEeCCCCCCCCccCCCCCceEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPS------Q------------TIGCTVGVKHITYGSSGSSSNSIKGDSERDFF 84 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~------~------------t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (333)
+|+|+|.+|+|||||+++|+......... . .+++......+.+ ..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~---------------~~~~ 65 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW---------------KGHK 65 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE---------------CCEE
Confidence 48999999999999999998532110000 0 1111111222222 3467
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
+.+|||||+.+|......++..+|++|+|+|+++.........|. .+... ++|+++|+||+|+.
T Consensus 66 i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~~---------------~~p~iivvNK~D~~ 129 (268)
T cd04170 66 INLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADEA---------------GIPRIIFINKMDRE 129 (268)
T ss_pred EEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHHc---------------CCCEEEEEECCccC
Confidence 999999999888887888899999999999999876655444443 33333 58999999999987
Q ss_pred Cc
Q 019959 165 AK 166 (333)
Q Consensus 165 ~~ 166 (333)
..
T Consensus 130 ~~ 131 (268)
T cd04170 130 RA 131 (268)
T ss_pred CC
Confidence 54
No 241
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.48 E-value=4.6e-13 Score=137.17 Aligned_cols=159 Identities=18% Similarity=0.168 Sum_probs=96.7
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCC-CCC------------CC--------------------cccceeEEEEEE
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSS-FSR------------PS--------------------QTIGCTVGVKHI 63 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~------------~~--------------------~t~~~~~~~~~~ 63 (333)
.....++|+|+|.+++|||||+++|+...- +.. .. ..++.+.....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 344568999999999999999999995421 110 00 011111111122
Q ss_pred EeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCC
Q 019959 64 TYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLA 143 (333)
Q Consensus 64 ~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~ 143 (333)
. .....+.|+||||+++|.......+..+|++|+|+|++....-+.... +..+...+
T Consensus 100 ~---------------~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~~~~~~~~------- 156 (632)
T PRK05506 100 A---------------TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-SFIASLLG------- 156 (632)
T ss_pred c---------------cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-HHHHHHhC-------
Confidence 1 234568899999999887655556789999999999986543221112 22222221
Q ss_pred CCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHH
Q 019959 144 SGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKE 220 (333)
Q Consensus 144 ~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~ 220 (333)
..++|||.||+|+...+... ..++.++...+.+++++. +++++. +||++|.|+++
T Consensus 157 -------~~~iivvvNK~D~~~~~~~~--~~~i~~~i~~~~~~~~~~----~~~iip---------iSA~~g~ni~~ 211 (632)
T PRK05506 157 -------IRHVVLAVNKMDLVDYDQEV--FDEIVADYRAFAAKLGLH----DVTFIP---------ISALKGDNVVT 211 (632)
T ss_pred -------CCeEEEEEEecccccchhHH--HHHHHHHHHHHHHHcCCC----CccEEE---------EecccCCCccc
Confidence 24788999999997421111 111123344444555542 356666 99999999874
No 242
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.48 E-value=2e-13 Score=131.46 Aligned_cols=262 Identities=19% Similarity=0.254 Sum_probs=172.7
Q ss_pred hccCCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeC
Q 019959 11 KELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDI 90 (333)
Q Consensus 11 ~~~~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt 90 (333)
+|...+....++|+.|||..++|||+|+++|+.+.|.....+.-| .|. +.+.++ ++...+.+.|.
T Consensus 20 qewtlsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~-~~k-kE~vv~-------------gqs~lLlirde 84 (749)
T KOG0705|consen 20 QEWTLSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG-RFK-KEVVVD-------------GQSHLLLIRDE 84 (749)
T ss_pred cceeeecccchhheeeeecccCCceeeeeeeccceeccccCCcCc-cce-eeEEee-------------ccceEeeeecc
Confidence 344455556789999999999999999999999988776665533 343 333333 67888999999
Q ss_pred CCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 91 SGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 91 ~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
+|.... .|..++|++||||.+.+..+|+.+..+..++..+.. ...+|+++||++.=......+.
T Consensus 85 g~~~~a-----Qft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~-----------r~~i~l~lvgtqd~iS~~~~rv 148 (749)
T KOG0705|consen 85 GGHPDA-----QFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRN-----------ISDLPLILVGTQDHISAKRPRV 148 (749)
T ss_pred cCCchh-----hhhhhccceEEEEEeccccCHHHHHHHHhhcccccc-----------cccchHHhhcCcchhhcccccc
Confidence 884332 567899999999999999999999888887765532 2478999999986555444344
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHhcccCCCCC-CCCCCCC
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEMPAP-NPWSISP 249 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~ 249 (333)
+.. ..+++++.++. .|.||| ++|.+|.+++.+|+.+...++...........+ ......+
T Consensus 149 ~~d----a~~r~l~~~~k------rcsy~e---------t~atyGlnv~rvf~~~~~k~i~~~~~qq~~~~~~~s~~~s~ 209 (749)
T KOG0705|consen 149 ITD----DRARQLSAQMK------RCSYYE---------TCATYGLNVERVFQEVAQKIVQLRKYQQLPASSSKSLPESP 209 (749)
T ss_pred cch----HHHHHHHHhcC------ccceee---------cchhhhhhHHHHHHHHHHHHHHHHhhhhcccccccccccCC
Confidence 443 66666665544 366777 999999999999999998887764433333221 1222222
Q ss_pred CCCCcccccc-----cCCCCccccccCCCCCCCCCCCCCccc----cCCCCCCCCCCCCCCcccCCccccccccCCCccc
Q 019959 250 THKPIQRLDE-----NSSDDDKFYSSGYSSDPYNMLPPLPAQ----RNLTPPPTLYPQQPVSVQENYNLPRFSLTGSQEI 320 (333)
Q Consensus 250 ~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~ 320 (333)
.++.+..... +.+.....| ....++.|+. .....||+...++|+.....+....|.+.++++.
T Consensus 210 ~~s~a~s~vhig~~~ngg~s~~~y--------sss~pstpsisq~d~r~~~~~ta~tpTPv~k~s~R~SnlFts~Kgs~~ 281 (749)
T KOG0705|consen 210 SHSPAGSTVHAGQSRNGGGSLSDY--------SSSIPSTPSTSQEDLRFEVAPTANTPTPVCKQSKRWSNLFTSRKGSDP 281 (749)
T ss_pred ccchhhhhhhhhhcccCCcchhhh--------hccCCCCcchhhhhhccccccccCCCchhhHHHHHHHhhhhcccCCCc
Confidence 2221111110 011111111 1122222221 1345577777888899888889999999999955
Q ss_pred cc--cccccccC
Q 019959 321 SS--SARSKRTD 330 (333)
Q Consensus 321 ~~--~~~~~~~~ 330 (333)
.+ ++...++|
T Consensus 282 dkekk~~e~~ad 293 (749)
T KOG0705|consen 282 DKEKKALENHAD 293 (749)
T ss_pred cccccchhhhhh
Confidence 43 55555554
No 243
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.46 E-value=1.3e-12 Score=104.52 Aligned_cols=105 Identities=21% Similarity=0.219 Sum_probs=66.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh------
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER------ 95 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~------ 95 (333)
+|+|+|.+|||||||+|+|++... .....+..+.......+.++ ...+.|+||||...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~---------------~~~~~~vDtpG~~~~~~~~~ 65 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYN---------------NKKFILVDTPGINDGESQDN 65 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEET---------------TEEEEEEESSSCSSSSHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeec---------------eeeEEEEeCCCCcccchhhH
Confidence 699999999999999999997532 11121222222223444443 34467999999421
Q ss_pred ----hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 96 ----YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 96 ----~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
+.... ..+..+|++|+|+|+++... +....++.++. . +.|+++|.||
T Consensus 66 ~~~~~~~~~-~~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~-~---------------~~~~i~v~NK 116 (116)
T PF01926_consen 66 DGKEIRKFL-EQISKSDLIIYVVDASNPIT-EDDKNILRELK-N---------------KKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHH-HHHCTESEEEEEEETTSHSH-HHHHHHHHHHH-T---------------TSEEEEEEES
T ss_pred HHHHHHHHH-HHHHHCCEEEEEEECCCCCC-HHHHHHHHHHh-c---------------CCCEEEEEcC
Confidence 11222 23479999999999887422 23334445553 2 6899999998
No 244
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.2e-12 Score=125.26 Aligned_cols=161 Identities=20% Similarity=0.216 Sum_probs=116.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
=|+|+|.--.|||||+..+-+........-.++-.+.-..+.++. +..-.+.|.|||||+.|..|+..
T Consensus 7 vVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~------------~~~~~itFiDTPGHeAFt~mRaR 74 (509)
T COG0532 7 VVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDV------------IKIPGITFIDTPGHEAFTAMRAR 74 (509)
T ss_pred EEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEecc------------CCCceEEEEcCCcHHHHHHHHhc
Confidence 699999999999999999988777665555555555555555531 12345999999999999999998
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
-..-+|++|+|+|+.+.---+.+.. +..++. .++|++|+.||+|..+.+. +....
T Consensus 75 Ga~vtDIaILVVa~dDGv~pQTiEA-I~hak~---------------a~vP~iVAiNKiDk~~~np---------~~v~~ 129 (509)
T COG0532 75 GASVTDIAILVVAADDGVMPQTIEA-INHAKA---------------AGVPIVVAINKIDKPEANP---------DKVKQ 129 (509)
T ss_pred CCccccEEEEEEEccCCcchhHHHH-HHHHHH---------------CCCCEEEEEecccCCCCCH---------HHHHH
Confidence 8889999999999998543222211 122222 3799999999999986532 44444
Q ss_pred HHHHcCCCC--CCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 183 WVEKQGLLP--SSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 183 ~~~~~~~~~--~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
-..++|+.+ |..++.+++ +||++|.|++++++.++-..
T Consensus 130 el~~~gl~~E~~gg~v~~Vp---------vSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 130 ELQEYGLVPEEWGGDVIFVP---------VSAKTGEGIDELLELILLLA 169 (509)
T ss_pred HHHHcCCCHhhcCCceEEEE---------eeccCCCCHHHHHHHHHHHH
Confidence 445566643 444566777 99999999999998876544
No 245
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.45 E-value=2.6e-13 Score=121.55 Aligned_cols=168 Identities=15% Similarity=0.262 Sum_probs=99.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh---
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC--- 99 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~--- 99 (333)
||+++|..++||||+.+-+..+-... ....+|.+.....-.+.. ...+.++|||+||+..+...
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~-dT~~L~~T~~ve~~~v~~------------~~~~~l~iwD~pGq~~~~~~~~~ 67 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPR-DTLRLEPTIDVEKSHVRF------------LSFLPLNIWDCPGQDDFMENYFN 67 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GG-GGGG-----SEEEEEEEC------------TTSCEEEEEEE-SSCSTTHTTHT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCch-hccccCCcCCceEEEEec------------CCCcEEEEEEcCCcccccccccc
Confidence 79999999999999998888664322 222223333233333311 23568999999998765443
Q ss_pred --HHhhccCCcEEEEEEECCCcccHHHH---HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcc
Q 019959 100 --RSILYSQINGVIFVHDLSQRRTKTSL---QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSG 174 (333)
Q Consensus 100 --~~~~~~~ad~vIlV~D~s~~~S~~~l---~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~ 174 (333)
....+++++++|+|+|+.+.+-.+.+ ...+..+.+.. +++.+.|..+|+|+..++.+.....
T Consensus 68 ~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-------------p~~~v~vfiHK~D~l~~~~r~~~~~ 134 (232)
T PF04670_consen 68 SQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYS-------------PNIKVFVFIHKMDLLSEDEREEIFR 134 (232)
T ss_dssp CCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHS-------------TT-EEEEEEE-CCCS-HHHHHHHHH
T ss_pred ccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhC-------------CCCeEEEEEeecccCCHHHHHHHHH
Confidence 45678999999999999965544444 44555555553 4889999999999987655555544
Q ss_pred cHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 175 NLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++.+...+.+...+.. .+.|+- ||.... .+.+.+..++...+
T Consensus 135 ~~~~~i~~~~~~~~~~----~~~~~~---------TSI~D~-----Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 135 DIQQRIRDELEDLGIE----DITFFL---------TSIWDE-----SLYEAWSKIVQKLI 176 (232)
T ss_dssp HHHHHHHHHHHHTT-T----SEEEEE---------E-TTST-----HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhhcccc----ceEEEe---------ccCcCc-----HHHHHHHHHHHHHc
Confidence 4455555566655532 244555 787763 44445555555443
No 246
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.45 E-value=2.1e-12 Score=118.82 Aligned_cols=113 Identities=15% Similarity=0.181 Sum_probs=77.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC--C----------------CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSS--F----------------SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFF 84 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~--~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (333)
+|+|+|.+|+|||||+++|+...- . .+....+..+.....+.+ ..++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~---------------~~~~ 65 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW---------------KDHR 65 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE---------------CCEE
Confidence 489999999999999999974211 0 001111122222222222 3577
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
+.+|||||+.+|......+++.+|++|+|+|+++...-.. ..++..+... ++|++++.||+|+.
T Consensus 66 i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~---------------~~p~ivviNK~D~~ 129 (270)
T cd01886 66 INIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRY---------------NVPRIAFVNKMDRT 129 (270)
T ss_pred EEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHc---------------CCCEEEEEECCCCC
Confidence 9999999999888888888999999999999988653332 2333444443 58999999999987
Q ss_pred Cc
Q 019959 165 AK 166 (333)
Q Consensus 165 ~~ 166 (333)
..
T Consensus 130 ~a 131 (270)
T cd01886 130 GA 131 (270)
T ss_pred CC
Confidence 53
No 247
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.45 E-value=7.5e-13 Score=120.52 Aligned_cols=156 Identities=19% Similarity=0.186 Sum_probs=103.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh----hhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER----YKD 98 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~----~~~ 98 (333)
.|-+||-||+|||||++++...+-.....+..++....-.+.++ ....+.+-|+||.-+ -+.
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yd--------------df~q~tVADiPGiI~GAh~nkG 263 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYD--------------DFSQITVADIPGIIEGAHMNKG 263 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecc--------------ccceeEeccCccccccccccCc
Confidence 57899999999999999999664332222222222222344443 223388999999322 122
Q ss_pred hHHhh---ccCCcEEEEEEECCCc---ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 99 CRSIL---YSQINGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 99 ~~~~~---~~~ad~vIlV~D~s~~---~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
+-..| +..++.++||+|++.. .-++.++....++..+.. +..+.|.++|+||+|+.+.+
T Consensus 264 lG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek----------~L~~rp~liVaNKiD~~eae----- 328 (366)
T KOG1489|consen 264 LGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK----------GLADRPALIVANKIDLPEAE----- 328 (366)
T ss_pred ccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh----------hhccCceEEEEeccCchhHH-----
Confidence 22233 4579999999999998 778888777777765532 23478999999999996431
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
.+...++++.+.-. -+++ +||++++|++++++.|-
T Consensus 329 ----~~~l~~L~~~lq~~------~V~p---------vsA~~~egl~~ll~~lr 363 (366)
T KOG1489|consen 329 ----KNLLSSLAKRLQNP------HVVP---------VSAKSGEGLEELLNGLR 363 (366)
T ss_pred ----HHHHHHHHHHcCCC------cEEE---------eeeccccchHHHHHHHh
Confidence 13346677766521 1455 99999988888776653
No 248
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.44 E-value=1.8e-12 Score=118.55 Aligned_cols=171 Identities=16% Similarity=0.142 Sum_probs=111.0
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh-
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY- 96 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~- 96 (333)
+.+-.+|++||.|+||||||+++|++........++.+++...-.+.|+ ...++|.|+||.-.-
T Consensus 60 KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~---------------ga~IQild~Pgii~ga 124 (365)
T COG1163 60 KSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYK---------------GAQIQLLDLPGIIEGA 124 (365)
T ss_pred ccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeec---------------CceEEEEcCcccccCc
Confidence 3455689999999999999999999875544444444555666677765 577999999982111
Q ss_pred ---h---hhHHhhccCCcEEEEEEECCCccc-HHHHHHHHHHHH------------------------------------
Q 019959 97 ---K---DCRSILYSQINGVIFVHDLSQRRT-KTSLQKWAVEIA------------------------------------ 133 (333)
Q Consensus 97 ---~---~~~~~~~~~ad~vIlV~D~s~~~S-~~~l~~~~~~i~------------------------------------ 133 (333)
+ ...-...+.||++|+|.|+..... .+.+...+....
T Consensus 125 s~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~i 204 (365)
T COG1163 125 SSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTV 204 (365)
T ss_pred ccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHH
Confidence 1 112235789999999999987665 333322222210
Q ss_pred -----hcCCCCCCCC-CCC-----------CCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCC
Q 019959 134 -----TSGTFSAPLA-SGG-----------PGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEEL 196 (333)
Q Consensus 134 -----~~~~~~~~~~-~~~-----------~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (333)
++..++|.-. ... .+-.-+|.++|.||+|+... ++...+.+...
T Consensus 205 r~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-----------e~~~~l~~~~~-------- 265 (365)
T COG1163 205 RAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-----------EELERLARKPN-------- 265 (365)
T ss_pred HHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-----------HHHHHHHhccc--------
Confidence 0000000000 000 01124799999999999874 56666666553
Q ss_pred CccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 197 PLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 197 p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++. +||+.+.|++++.+.+++.+---
T Consensus 266 -~v~---------isa~~~~nld~L~e~i~~~L~li 291 (365)
T COG1163 266 -SVP---------ISAKKGINLDELKERIWDVLGLI 291 (365)
T ss_pred -eEE---------EecccCCCHHHHHHHHHHhhCeE
Confidence 333 99999999999999999987553
No 249
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.44 E-value=1.6e-12 Score=127.58 Aligned_cols=163 Identities=16% Similarity=0.214 Sum_probs=100.4
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC--CCCC-------------------------C--CCcccceeEEEEEEEeCCCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG--SSFS-------------------------R--PSQTIGCTVGVKHITYGSSG 69 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~--~~~~-------------------------~--~~~t~~~~~~~~~~~~~~~~ 69 (333)
...++|+++|..++|||||+.+|+.. .... . ....-|.+.......+.
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~--- 81 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE--- 81 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEc---
Confidence 34579999999999999999999852 1100 0 00011222222222222
Q ss_pred CCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCccc---H---HHHHHHHHHHHhcCCCCCCCC
Q 019959 70 SSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRT---K---TSLQKWAVEIATSGTFSAPLA 143 (333)
Q Consensus 70 ~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S---~---~~l~~~~~~i~~~~~~~~~~~ 143 (333)
.....+.|+||||+++|.......+..+|++|+|+|++.... | ......+..+...
T Consensus 82 ----------~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~-------- 143 (446)
T PTZ00141 82 ----------TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL-------- 143 (446)
T ss_pred ----------cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc--------
Confidence 345789999999999998877777889999999999987531 1 1222222233333
Q ss_pred CCCCCCCCCc-EEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHH
Q 019959 144 SGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKE 220 (333)
Q Consensus 144 ~~~~~~~~~P-iivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~ 220 (333)
.+| +|++.||+|+...+..+-.-.++.++...+....|+.. +++|++. +||.+|.|+.+
T Consensus 144 -------gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~--~~~~~ip---------iSa~~g~ni~~ 203 (446)
T PTZ00141 144 -------GVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNP--EKVPFIP---------ISGWQGDNMIE 203 (446)
T ss_pred -------CCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCc--ccceEEE---------eecccCCCccc
Confidence 456 67899999953210011111222355555555555421 2467777 99999999854
No 250
>PRK00049 elongation factor Tu; Reviewed
Probab=99.44 E-value=3.8e-12 Score=123.40 Aligned_cols=156 Identities=22% Similarity=0.260 Sum_probs=97.6
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCC-------CC-------CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEE
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSS-------FS-------RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFF 84 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~-------~~-------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (333)
...++|+++|..++|||||+++|++... .. .....-|.+.......+. .....
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-------------~~~~~ 76 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYE-------------TEKRH 76 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEc-------------CCCeE
Confidence 4568999999999999999999986310 00 001122333333344443 23456
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEE-EEeeCcCC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYV-VIGNKADV 163 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pii-vVgNK~Dl 163 (333)
+.|.||||+.+|.......+..+|++++|+|++....-. ...++..+... ++|++ ++.||+|+
T Consensus 77 i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~~---------------g~p~iiVvvNK~D~ 140 (396)
T PRK00049 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV---------------GVPYIVVFLNKCDM 140 (396)
T ss_pred EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHHc---------------CCCEEEEEEeecCC
Confidence 889999999988777777788999999999998754322 22333444443 57865 68999999
Q ss_pred CCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcC
Q 019959 164 AAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY 217 (333)
Q Consensus 164 ~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~ 217 (333)
.... .. ...+.++...+....++. ..++|++. +||++|.+
T Consensus 141 ~~~~--~~-~~~~~~~i~~~l~~~~~~--~~~~~iv~---------iSa~~g~~ 180 (396)
T PRK00049 141 VDDE--EL-LELVEMEVRELLSKYDFP--GDDTPIIR---------GSALKALE 180 (396)
T ss_pred cchH--HH-HHHHHHHHHHHHHhcCCC--ccCCcEEE---------eecccccC
Confidence 7431 10 011123444444444531 12367777 99998753
No 251
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.43 E-value=9.2e-13 Score=105.81 Aligned_cols=90 Identities=23% Similarity=0.286 Sum_probs=69.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC-cccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPS-QTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
+||+++|+.|||||+|+.++....+...+. +|++ +....
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~----------------------------------------~~~~~ 40 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG----------------------------------------IDVYD 40 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh----------------------------------------hhhcc
Confidence 589999999999999999998777754433 3332 22222
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 165 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~ 165 (333)
..+++.++++++||+.++..+++.+ |...+..... .++|+++++||.|+..
T Consensus 41 ~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k------------~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 41 PTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNK------------SDLPILVGGNRDVLEE 91 (124)
T ss_pred ccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCC------------CCCcEEEEeechhhHh
Confidence 3457789999999999999999876 8877765532 3688999999999854
No 252
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.43 E-value=2.3e-13 Score=116.95 Aligned_cols=119 Identities=25% Similarity=0.374 Sum_probs=71.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
.|+|+|++|+|||+|+.+|.++......... .... ...+. ......+.+.|+||+++.+.....
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~------------~~~~~~~~lvD~PGH~rlr~~~~~ 68 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVN------------NSKGKKLRLVDIPGHPRLRSKLLD 68 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGS------------STCGTCECEEEETT-HCCCHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEee------------cCCCCEEEEEECCCcHHHHHHHHH
Confidence 7999999999999999999988554322221 1111 11111 123345899999999998765444
Q ss_pred ---hccCCcEEEEEEECCC-cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 103 ---LYSQINGVIFVHDLSQ-RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 103 ---~~~~ad~vIlV~D~s~-~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
+...+.+||||+|.+. ......+..++..+....... ...+|++|++||.|+...
T Consensus 69 ~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~---------~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 69 ELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQ---------KNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCC---------TT--EEEEEEE-TTSTT-
T ss_pred hhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhc---------cCCCCEEEEEeCcccccc
Confidence 4778999999999974 334455544444443321100 137899999999999865
No 253
>PLN03127 Elongation factor Tu; Provisional
Probab=99.42 E-value=4.8e-12 Score=124.17 Aligned_cols=118 Identities=25% Similarity=0.291 Sum_probs=78.4
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcC------CC----------CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCc
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKG------SS----------FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~------~~----------~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 81 (333)
....++|+++|..++|||||+++|++. .. ..+... |.+.......+. ..
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~r--GiTi~~~~~~~~-------------~~ 122 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKAR--GITIATAHVEYE-------------TA 122 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhc--CceeeeeEEEEc-------------CC
Confidence 345689999999999999999999722 10 011112 233333333343 23
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeC
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNK 160 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK 160 (333)
...+.|.||||+.+|.......+..+|++++|+|+++...-+. ...+..+... ++| +|+|.||
T Consensus 123 ~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~~---------------gip~iIvviNK 186 (447)
T PLN03127 123 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV---------------GVPSLVVFLNK 186 (447)
T ss_pred CeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc---------------CCCeEEEEEEe
Confidence 4578999999999887766666678999999999987543222 2333334433 578 5788999
Q ss_pred cCCCCc
Q 019959 161 ADVAAK 166 (333)
Q Consensus 161 ~Dl~~~ 166 (333)
+|+.+.
T Consensus 187 iDlv~~ 192 (447)
T PLN03127 187 VDVVDD 192 (447)
T ss_pred eccCCH
Confidence 999753
No 254
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.40 E-value=4.8e-12 Score=126.42 Aligned_cols=117 Identities=18% Similarity=0.290 Sum_probs=81.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHc-CCCCCC-------------------CCcccceeEEEEEEEeCCCCCCCCccCCCC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVK-GSSFSR-------------------PSQTIGCTVGVKHITYGSSGSSSNSIKGDS 79 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~-~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~ 79 (333)
+..+|+|||..++|||||+++|+. ...+.. .....|.++....+.+.
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~------------- 76 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFP------------- 76 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEe-------------
Confidence 345999999999999999999863 211110 00112333433333333
Q ss_pred CceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEee
Q 019959 80 ERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 159 (333)
Q Consensus 80 ~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgN 159 (333)
...+.++||||||+.+|......++..+|++|+|+|+++... .....++..+... ++|+++++|
T Consensus 77 ~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~~---------------~~PiivviN 140 (527)
T TIGR00503 77 YRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRLR---------------DTPIFTFMN 140 (527)
T ss_pred eCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHhc---------------CCCEEEEEE
Confidence 346889999999999998877778899999999999987532 2233444433332 689999999
Q ss_pred CcCCCC
Q 019959 160 KADVAA 165 (333)
Q Consensus 160 K~Dl~~ 165 (333)
|+|+..
T Consensus 141 KiD~~~ 146 (527)
T TIGR00503 141 KLDRDI 146 (527)
T ss_pred CccccC
Confidence 999864
No 255
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.36 E-value=1.2e-11 Score=127.79 Aligned_cols=132 Identities=16% Similarity=0.175 Sum_probs=89.7
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-C---CCC--------------CcccceeEEEEEEEeCCCCCCCCccCCCCCc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSS-F---SRP--------------SQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~-~---~~~--------------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 81 (333)
..-+|+|+|..++|||||+++|+...- . ... ...++++.....+.+ .
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~---------------~ 73 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW---------------K 73 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE---------------C
Confidence 345899999999999999999974211 0 000 112222222333333 3
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+++.+|||||+.+|......+++.+|++|+|+|+++....+....| ..+... ++|+++|+||+
T Consensus 74 ~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~---------------~~p~ivviNK~ 137 (689)
T TIGR00484 74 GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANRY---------------EVPRIAFVNKM 137 (689)
T ss_pred CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHHc---------------CCCEEEEEECC
Confidence 57899999999998888888889999999999999987665544333 334443 58999999999
Q ss_pred CCCCccCCccCcccHHHHHHHHHHHcCCC
Q 019959 162 DVAAKEGTRGSSGNLVDAARQWVEKQGLL 190 (333)
Q Consensus 162 Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~ 190 (333)
|+...+. .+...++...++..
T Consensus 138 D~~~~~~--------~~~~~~i~~~l~~~ 158 (689)
T TIGR00484 138 DKTGANF--------LRVVNQIKQRLGAN 158 (689)
T ss_pred CCCCCCH--------HHHHHHHHHHhCCC
Confidence 9985421 23455555666653
No 256
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.35 E-value=1.1e-11 Score=121.79 Aligned_cols=177 Identities=12% Similarity=0.155 Sum_probs=102.1
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCC---CCCCCcccceeEEEEEE---------------EeCCCCCCCCccCCCC
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSS---FSRPSQTIGCTVGVKHI---------------TYGSSGSSSNSIKGDS 79 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~---~~~~~~t~~~~~~~~~~---------------~~~~~~~~~~~i~~~~ 79 (333)
....+.|.++|.-..|||||+.+|++-.. ..+-...++.+...... .++. +...+.+....
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 109 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGS-SKPDNPPCPGC 109 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCC-Ccccccccccc
Confidence 45678999999999999999999996422 22222221111111111 0110 00000000000
Q ss_pred C----ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcE
Q 019959 80 E----RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY 154 (333)
Q Consensus 80 ~----~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pi 154 (333)
+ ....+.|+|+||+++|.......+..+|++++|+|+++.. .-+.. ..+..+...+ -.++
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl~i~~~lg--------------i~~i 174 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHLAAVEIMK--------------LKHI 174 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHHHHHHHcC--------------CCcE
Confidence 1 1246899999999999777666688999999999999742 22222 2222222221 2368
Q ss_pred EEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 155 VVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 155 ivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
|||.||+|+.+... . .+..++++.+.+... ....|++. +||++|.|++.+++.|.+
T Consensus 175 IVvlNKiDlv~~~~--~--~~~~~ei~~~l~~~~----~~~~~iip---------VSA~~G~nI~~Ll~~L~~ 230 (460)
T PTZ00327 175 IILQNKIDLVKEAQ--A--QDQYEEIRNFVKGTI----ADNAPIIP---------ISAQLKYNIDVVLEYICT 230 (460)
T ss_pred EEEEecccccCHHH--H--HHHHHHHHHHHHhhc----cCCCeEEE---------eeCCCCCCHHHHHHHHHh
Confidence 99999999975321 0 111233333333321 12356777 999999999877777664
No 257
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.35 E-value=2.8e-11 Score=116.93 Aligned_cols=96 Identities=20% Similarity=0.150 Sum_probs=57.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCC--------Cc-cCCCCCceEEEEEEeCCC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSS--------NS-IKGDSERDFFVELWDISG 92 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~--------~~-i~~~~~~~~~l~i~Dt~G 92 (333)
+||+|||.+|||||||+|+|++..+.....+..+.+...-...+....... .. ........+.++|||++|
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 589999999999999999999876643222222222222111110000000 00 000112347799999999
Q ss_pred c----hhhhhhHHhh---ccCCcEEEEEEECC
Q 019959 93 H----ERYKDCRSIL---YSQINGVIFVHDLS 117 (333)
Q Consensus 93 ~----e~~~~~~~~~---~~~ad~vIlV~D~s 117 (333)
. .+...+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 3 4445555555 78999999999997
No 258
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=7.6e-12 Score=119.87 Aligned_cols=174 Identities=14% Similarity=0.112 Sum_probs=106.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh-h---
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER-Y--- 96 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~-~--- 96 (333)
++|+|+|.||||||||+|.|.+.+. +..+.+..+.|...-.++++ .+.+.|.||+|..+ -
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~---------------G~~v~L~DTAGiRe~~~~~ 333 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVN---------------GVPVRLSDTAGIREESNDG 333 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecC---------------CeEEEEEeccccccccCCh
Confidence 6999999999999999999997653 34444444455544555543 57899999999443 1
Q ss_pred -----hhhHHhhccCCcEEEEEEEC--CCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC
Q 019959 97 -----KDCRSILYSQINGVIFVHDL--SQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT 169 (333)
Q Consensus 97 -----~~~~~~~~~~ad~vIlV~D~--s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r 169 (333)
-......++.+|++++|+|+ ++-++-..+...+......... ..+.+..-+++++.||+|+...- +
T Consensus 334 iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~------~~~~~~~~~~i~~~nk~D~~s~~-~ 406 (531)
T KOG1191|consen 334 IEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVV------IVNKMEKQRIILVANKSDLVSKI-P 406 (531)
T ss_pred hHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEE------EeccccccceEEEechhhccCcc-c
Confidence 11122347799999999999 5554444444455544333211 01122457899999999998651 1
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
+... . ...+....|... .-...+ +|+++++|++++.+.+.+.+.+...
T Consensus 407 ~~~~----~-~~~~~~~~~~~~---~~i~~~---------vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 407 EMTK----I-PVVYPSAEGRSV---FPIVVE---------VSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred cccC----C-ceeccccccCcc---cceEEE---------eeechhhhHHHHHHHHHHHHHHhhc
Confidence 1110 0 000111111100 012333 8999998888888888777766543
No 259
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.34 E-value=2.2e-11 Score=112.25 Aligned_cols=164 Identities=18% Similarity=0.112 Sum_probs=106.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh----h
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS--SFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER----Y 96 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~----~ 96 (333)
-|-+||-||||||||++.+...+ +..++.+|+-....+..+ . ..-.+.+=|+||.-+ -
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~--~--------------~~~sfv~ADIPGLIEGAs~G 224 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV--D--------------GGESFVVADIPGLIEGASEG 224 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe--c--------------CCCcEEEecCcccccccccC
Confidence 47799999999999999999653 333344444333333333 2 123478889999211 1
Q ss_pred hhhHHhh---ccCCcEEEEEEECCCccc---HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 97 KDCRSIL---YSQINGVIFVHDLSQRRT---KTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 97 ~~~~~~~---~~~ad~vIlV~D~s~~~S---~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
..+-..| +.++.++++|+|++..+- .++......++..+. +...+.|.+||+||+|+....
T Consensus 225 ~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~----------~~L~~K~~ivv~NKiD~~~~~--- 291 (369)
T COG0536 225 VGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYS----------PKLAEKPRIVVLNKIDLPLDE--- 291 (369)
T ss_pred CCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhh----------HHhccCceEEEEeccCCCcCH---
Confidence 2222223 457999999999987653 666667777776663 233578999999999965441
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++.+.+++.+.....+ .+++. +||.++.|+++++..+++.+....
T Consensus 292 -------e~~~~~~~~l~~~~~~--~~~~~---------ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 292 -------EELEELKKALAEALGW--EVFYL---------ISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred -------HHHHHHHHHHHHhcCC--Cccee---------eehhcccCHHHHHHHHHHHHHHhh
Confidence 4455555544321100 11111 899999999999999988877654
No 260
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.33 E-value=1e-11 Score=111.50 Aligned_cols=171 Identities=18% Similarity=0.186 Sum_probs=104.0
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh--
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER-- 95 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~-- 95 (333)
....++|+|+|.+|||||||+|+|+.+....-..-.++.+......... ++ -.+.|||+||-++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~------------~~--~~l~lwDtPG~gdg~ 101 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSY------------DG--ENLVLWDTPGLGDGK 101 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhc------------cc--cceEEecCCCcccch
Confidence 4456799999999999999999999654433222222222222222111 12 3489999999544
Q ss_pred -----hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc---
Q 019959 96 -----YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE--- 167 (333)
Q Consensus 96 -----~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~--- 167 (333)
++.....++...|.++++.++.|+.---....|.+ +...+ .+.+++++.|.+|....-
T Consensus 102 ~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~d-Vi~~~-------------~~~~~i~~VtQ~D~a~p~~~W 167 (296)
T COG3596 102 DKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRD-VIILG-------------LDKRVLFVVTQADRAEPGREW 167 (296)
T ss_pred hhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHH-HHHhc-------------cCceeEEEEehhhhhcccccc
Confidence 66666677889999999999998753222233433 33332 257999999999986541
Q ss_pred --CCccCcccHH----HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 168 --GTRGSSGNLV----DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 168 --~r~v~~~~~~----~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+-......+. +.+..+.+.+.- -.|++. .|++.++|+++++..+++.+-
T Consensus 168 ~~~~~~p~~a~~qfi~~k~~~~~~~~q~-----V~pV~~---------~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 168 DSAGHQPSPAIKQFIEEKAEALGRLFQE-----VKPVVA---------VSGRLPWGLKELVRALITALP 222 (296)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHhh-----cCCeEE---------eccccCccHHHHHHHHHHhCc
Confidence 1111111111 112222111111 135554 788999999999988887664
No 261
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.33 E-value=7.9e-11 Score=107.57 Aligned_cols=180 Identities=21% Similarity=0.209 Sum_probs=116.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
-.|+|+|+.++|||||+.+|.+.+ .+...-|+.|..-.+.-+ +.+...++.+|-..|.-....+..
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de-----------~RDd~tr~~VWiLDGd~~h~~LLk 118 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDE-----------DRDDLTRCNVWILDGDLYHKGLLK 118 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccc-----------cchhhhhcceEEecCchhhhhHHh
Confidence 479999999999999999998764 445555666665555332 334566789999999776666666
Q ss_pred hhccCC----cEEEEEEECCCccc-HHHHHHHHHHHHhcCCCCC-------------------------CC-----C---
Q 019959 102 ILYSQI----NGVIFVHDLSQRRT-KTSLQKWAVEIATSGTFSA-------------------------PL-----A--- 143 (333)
Q Consensus 102 ~~~~~a----d~vIlV~D~s~~~S-~~~l~~~~~~i~~~~~~~~-------------------------~~-----~--- 143 (333)
..+... -.||++.|+++++. ++.+++|..-+.++..... .. .
T Consensus 119 ~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t 198 (473)
T KOG3905|consen 119 FALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTT 198 (473)
T ss_pred hcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccc
Confidence 554422 47889999999976 5678999877665521111 00 0
Q ss_pred -CCC---------------CCCCCCcEEEEeeCcCCC----Ccc-CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccC
Q 019959 144 -SGG---------------PGGLPVPYVVIGNKADVA----AKE-GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESF 202 (333)
Q Consensus 144 -~~~---------------~~~~~~PiivVgNK~Dl~----~~~-~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~ 202 (333)
.++ -.+..+|++||.+|||.. .+. -|.-...-|....+.||-.+|..
T Consensus 199 ~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Gaa------------ 266 (473)
T KOG3905|consen 199 VVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAA------------ 266 (473)
T ss_pred cccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCce------------
Confidence 000 023579999999999983 211 11111111224466677777753
Q ss_pred CCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 203 PGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 203 ~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.|.+|+|+..|++-+...|.+.+.-
T Consensus 267 ----LiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 267 ----LIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred ----eEEeecccccchHHHHHHHHHHhcC
Confidence 3349999998877777666665543
No 262
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=2e-11 Score=118.07 Aligned_cols=160 Identities=17% Similarity=0.270 Sum_probs=110.8
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCC-CCCC------------CCcccceeEEEE--EEEeCCCCCCCCccCCCCCceE
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGS-SFSR------------PSQTIGCTVGVK--HITYGSSGSSSNSIKGDSERDF 83 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~-~~~~------------~~~t~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~ 83 (333)
.+.=++.||-.---|||||..+|+... ++.. -...-|+++..+ .+.|. +++.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~------------~~~~y 125 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYK------------DGQSY 125 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEE------------cCCce
Confidence 444579999999999999999998321 1110 011224444433 33333 16789
Q ss_pred EEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC
Q 019959 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163 (333)
Q Consensus 84 ~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl 163 (333)
.++++|||||-+|.......+.-||++|+|+|++..-.-+.+..++..+.. +.-+|.|.||+|+
T Consensus 126 lLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----------------~L~iIpVlNKIDl 189 (650)
T KOG0462|consen 126 LLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----------------GLAIIPVLNKIDL 189 (650)
T ss_pred EEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----------------CCeEEEeeeccCC
Confidence 999999999999998888889999999999999998766666555555533 4679999999999
Q ss_pred CCccCCccCcccHHHHHH-HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 164 AAKEGTRGSSGNLVDAAR-QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 164 ~~~~~r~v~~~~~~~~~~-~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
...+. +... ++.+-+++ |...-+.+|||+|.|++++++.+++.
T Consensus 190 p~adp---------e~V~~q~~~lF~~-------------~~~~~i~vSAK~G~~v~~lL~AII~r 233 (650)
T KOG0462|consen 190 PSADP---------ERVENQLFELFDI-------------PPAEVIYVSAKTGLNVEELLEAIIRR 233 (650)
T ss_pred CCCCH---------HHHHHHHHHHhcC-------------CccceEEEEeccCccHHHHHHHHHhh
Confidence 87642 3333 33333443 22334449999999998877666553
No 263
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=5.1e-12 Score=104.81 Aligned_cols=116 Identities=17% Similarity=0.351 Sum_probs=91.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
-|++++|-.|+|||||+|.|..++. ..+.||.-. ....+.+. .++++.+|..|+..-+..+.
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHP--TSE~l~Ig---------------~m~ftt~DLGGH~qArr~wk 82 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHP--TSEELSIG---------------GMTFTTFDLGGHLQARRVWK 82 (193)
T ss_pred ceEEEEeecCCchhhHHHHHccccc-cccCCCcCC--ChHHheec---------------CceEEEEccccHHHHHHHHH
Confidence 4999999999999999999987765 345555332 23333332 46789999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
.|+..+|++++.+|+-|.+.|.+.+.-++.+..... ..++|+++.|||+|....
T Consensus 83 dyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~-----------la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 83 DYFPQVDAIVYLVDAYDQERFAESKKELDALLSDES-----------LATVPFLILGNKIDIPYA 136 (193)
T ss_pred HHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHH-----------HhcCcceeecccccCCCc
Confidence 999999999999999999999887766666544421 137999999999999865
No 264
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=8.2e-11 Score=113.92 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=112.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
-|.|+|.---|||||+..|-+........-.|+-.+.-..+.++. | -++.|.||||+..|..|+..
T Consensus 155 VVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~------------G--~~iTFLDTPGHaAF~aMRaR 220 (683)
T KOG1145|consen 155 VVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS------------G--KSITFLDTPGHAAFSAMRAR 220 (683)
T ss_pred eEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC------------C--CEEEEecCCcHHHHHHHHhc
Confidence 688999999999999999998877665555444444455555541 3 56889999999999999998
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
-..-+|++|+|+.+.|.---+.++. +...+. .++|+||+.||+|....+. +.+.+
T Consensus 221 GA~vtDIvVLVVAadDGVmpQT~Ea-IkhAk~---------------A~VpiVvAinKiDkp~a~p---------ekv~~ 275 (683)
T KOG1145|consen 221 GANVTDIVVLVVAADDGVMPQTLEA-IKHAKS---------------ANVPIVVAINKIDKPGANP---------EKVKR 275 (683)
T ss_pred cCccccEEEEEEEccCCccHhHHHH-HHHHHh---------------cCCCEEEEEeccCCCCCCH---------HHHHH
Confidence 8889999999999998643332221 111222 3899999999999876532 33332
Q ss_pred HHHHcCCC--CCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 183 WVEKQGLL--PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 183 ~~~~~~~~--~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
-.-..|+. .+-.+++.++ +||++|.|++.+-+.++-...
T Consensus 276 eL~~~gi~~E~~GGdVQvip---------iSAl~g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 276 ELLSQGIVVEDLGGDVQVIP---------ISALTGENLDLLEEAILLLAE 316 (683)
T ss_pred HHHHcCccHHHcCCceeEEE---------eecccCCChHHHHHHHHHHHH
Confidence 22233331 1222466777 999999999888777765443
No 265
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=2e-11 Score=105.49 Aligned_cols=132 Identities=21% Similarity=0.258 Sum_probs=83.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
.|+++|..++|||+|+.+|..+.+...... .....-.+.++ .-.+.+.|.||+.+.+.-...
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS---iepn~a~~r~g---------------s~~~~LVD~PGH~rlR~kl~e 101 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTS---IEPNEATYRLG---------------SENVTLVDLPGHSRLRRKLLE 101 (238)
T ss_pred cEEEEecCCCCceeeeeehhcCCccCeeee---eccceeeEeec---------------CcceEEEeCCCcHHHHHHHHH
Confidence 699999999999999999998854332221 11112222222 122789999999999887777
Q ss_pred hcc---CCcEEEEEEECCC-cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 103 LYS---QINGVIFVHDLSQ-RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 103 ~~~---~ad~vIlV~D~s~-~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++. .+-++|||+|..- ..-...+..++-.+...+.. ....+|++++.||.|+.-....++....++.
T Consensus 102 ~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~---------~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEk 172 (238)
T KOG0090|consen 102 YLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRV---------KKNKPPVLIACNKQDLFTAKTAEKIRQQLEK 172 (238)
T ss_pred HccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhcc---------ccCCCCEEEEecchhhhhcCcHHHHHHHHHH
Confidence 777 7999999999753 22334444444444333210 0136899999999999765433333333333
Q ss_pred HHH
Q 019959 179 AAR 181 (333)
Q Consensus 179 ~~~ 181 (333)
+..
T Consensus 173 Ei~ 175 (238)
T KOG0090|consen 173 EIH 175 (238)
T ss_pred HHH
Confidence 333
No 266
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.30 E-value=2.9e-11 Score=127.81 Aligned_cols=166 Identities=18% Similarity=0.166 Sum_probs=98.0
Q ss_pred CCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCC-CCCccC--CCCCceEEEEEEeCCCchhhhhhHHhhccCCc
Q 019959 32 VGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGS-SSNSIK--GDSERDFFVELWDISGHERYKDCRSILYSQIN 108 (333)
Q Consensus 32 vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~i~--~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad 108 (333)
++||||+.++.+........-.++..+....+.++.... +..-+. ...-+.-.+.||||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 459999999998877655444444444444444321000 000000 00001123899999999999998888888999
Q ss_pred EEEEEEECCC---cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc------------
Q 019959 109 GVIFVHDLSQ---RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS------------ 173 (333)
Q Consensus 109 ~vIlV~D~s~---~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~------------ 173 (333)
++|+|+|+++ +.+++.+. .+... ++|+++|+||+|+.... ....
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~~---------------~iPiIVViNKiDL~~~~--~~~~~~~~~~~~~~q~ 610 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQY---------------KTPFVVAANKIDLIPGW--NISEDEPFLLNFNEQD 610 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHHc---------------CCCEEEEEECCCCcccc--ccccchhhhhhhhhhH
Confidence 9999999997 34444443 22222 57999999999996431 1100
Q ss_pred ccHHHHH----HHH---HHHcCCCC--------CCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 174 GNLVDAA----RQW---VEKQGLLP--------SSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 174 ~~~~~~~----~~~---~~~~~~~~--------~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
....++. .++ ..++|+.. +...+++++ +||++|.|++++++.+..
T Consensus 611 ~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVp---------VSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 611 QHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVP---------VSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred HHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEE---------EEcCCCCCHHHHHHHHHH
Confidence 0000111 111 13344321 223466777 999999999998876653
No 267
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.28 E-value=5.3e-11 Score=104.31 Aligned_cols=116 Identities=18% Similarity=0.195 Sum_probs=69.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC----CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRP----SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
++|+|+|.+|||||||+|.+++....... ..|..+.. ....+. ...+.++||||-....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~--~~~~~~---------------~~~i~viDTPG~~d~~ 63 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQK--ESAVWD---------------GRRVNVIDTPGLFDTS 63 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccce--eeEEEC---------------CeEEEEEECcCCCCcc
Confidence 47999999999999999999987543322 22222222 222222 3469999999943221
Q ss_pred --------hh---HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 98 --------DC---RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 98 --------~~---~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
.+ ......++|++|+|+|+.+ .+-+. ...+..+.+... ...-.++++|.|+.|....
T Consensus 64 ~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg----------~~~~~~~ivv~T~~d~l~~ 131 (196)
T cd01852 64 VSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFG----------EKVLDHTIVLFTRGDDLEG 131 (196)
T ss_pred CChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhC----------hHhHhcEEEEEECccccCC
Confidence 11 1123457899999999987 33222 223333333211 0012478899999997643
No 268
>PRK12740 elongation factor G; Reviewed
Probab=99.28 E-value=5.5e-11 Score=122.81 Aligned_cols=109 Identities=23% Similarity=0.313 Sum_probs=76.4
Q ss_pred ECCCCCCHHHHHHHHHcCCCC-CC-----------------CCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEE
Q 019959 27 VGDSGVGKTSLVNLIVKGSSF-SR-----------------PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELW 88 (333)
Q Consensus 27 vG~~~vGKSSLl~~l~~~~~~-~~-----------------~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~ 88 (333)
||..++|||||+++|+...-. .. ....+.+......+.+ ..+.+.+|
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~---------------~~~~i~li 65 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW---------------KGHKINLI 65 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE---------------CCEEEEEE
Confidence 699999999999999643110 00 0112222222233333 35789999
Q ss_pred eCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 89 DISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 89 Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
||||+.+|......++..+|++|+|+|+++.........|. .+... ++|+++|+||+|+...
T Consensus 66 DtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~~---------------~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 66 DTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWR-QAEKY---------------GVPRIIFVNKMDRAGA 127 (668)
T ss_pred ECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHHc---------------CCCEEEEEECCCCCCC
Confidence 99999988877778899999999999999887766554443 33333 5899999999998753
No 269
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.27 E-value=1.9e-11 Score=96.90 Aligned_cols=136 Identities=20% Similarity=0.282 Sum_probs=93.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc----hhhhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH----ERYKD 98 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~----e~~~~ 98 (333)
||++||..|+|||||++.+.+.... +..|..++|..+ -..||||. .++..
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve~~d~------------------------~~IDTPGEy~~~~~~Y~ 56 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVEFNDK------------------------GDIDTPGEYFEHPRWYH 56 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccceeeccCc------------------------cccCCchhhhhhhHHHH
Confidence 7999999999999999999877542 333333333111 14599993 22222
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
-.......+|++++|..+++++|.-. ..+... ...|+|-|.+|.||.++.+ ++
T Consensus 57 aL~tt~~dadvi~~v~~and~~s~f~-----p~f~~~--------------~~k~vIgvVTK~DLaed~d--------I~ 109 (148)
T COG4917 57 ALITTLQDADVIIYVHAANDPESRFP-----PGFLDI--------------GVKKVIGVVTKADLAEDAD--------IS 109 (148)
T ss_pred HHHHHhhccceeeeeecccCccccCC-----cccccc--------------cccceEEEEecccccchHh--------HH
Confidence 22334678999999999999976211 111111 2457999999999996421 47
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
..++|..+-|.. ++|+ +|+.++.|++++++.|.
T Consensus 110 ~~~~~L~eaGa~------~IF~---------~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 110 LVKRWLREAGAE------PIFE---------TSAVDNQGVEELVDYLA 142 (148)
T ss_pred HHHHHHHHcCCc------ceEE---------EeccCcccHHHHHHHHH
Confidence 788999999964 5666 99999988888877664
No 270
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.27 E-value=3.4e-11 Score=125.01 Aligned_cols=118 Identities=18% Similarity=0.153 Sum_probs=81.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC---------------CCCCC---CCcccceeEEEEEEEeCCCCCCCCccCCCCCc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG---------------SSFSR---PSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~---------------~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 81 (333)
...+|+|+|..++|||||+++|+.. .+... ...|+........+.+. ..
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~-------------~~ 84 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYE-------------GN 84 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeec-------------CC
Confidence 4469999999999999999999842 11110 11233322222222232 45
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+.+.||||||+.+|.......++.+|++|+|+|+.+....+....|.. +... ++|+++|+||+
T Consensus 85 ~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~~~---------------~~p~ivviNKi 148 (720)
T TIGR00490 85 EYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-ALKE---------------NVKPVLFINKV 148 (720)
T ss_pred ceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HHHc---------------CCCEEEEEECh
Confidence 7889999999999998888888999999999999988544333333332 2222 57888999999
Q ss_pred CCCCc
Q 019959 162 DVAAK 166 (333)
Q Consensus 162 Dl~~~ 166 (333)
|....
T Consensus 149 D~~~~ 153 (720)
T TIGR00490 149 DRLIN 153 (720)
T ss_pred hcccc
Confidence 98643
No 271
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.25 E-value=1.2e-10 Score=113.57 Aligned_cols=152 Identities=17% Similarity=0.185 Sum_probs=112.1
Q ss_pred hhhhhhhccCCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEE
Q 019959 5 ERERENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFF 84 (333)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (333)
.|+|..+....+.-.+.+++.|+|+.++|||.|++.|++..+...+..+....+....+... +....
T Consensus 409 tRkr~~d~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~-------------g~~k~ 475 (625)
T KOG1707|consen 409 TRKRKLDRKKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVK-------------GQQKY 475 (625)
T ss_pred hhhhhhhhccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeec-------------cccce
Confidence 56777776667778888999999999999999999999988877666666666666666654 45555
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
+.+.|..-. ....+...- ..||+++++||.+++.+|..+...+..-... ..+|+++|++|+|+.
T Consensus 476 LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--------------~~~Pc~~va~K~dlD 539 (625)
T KOG1707|consen 476 LILREIGED-DQDFLTSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDL--------------YKIPCLMVATKADLD 539 (625)
T ss_pred EEEeecCcc-ccccccCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhhc--------------cCCceEEEeeccccc
Confidence 667776643 222222222 5799999999999999999887666554433 279999999999998
Q ss_pred CccCCccCcccHHHHHHHHHHHcCCCC
Q 019959 165 AKEGTRGSSGNLVDAARQWVEKQGLLP 191 (333)
Q Consensus 165 ~~~~r~v~~~~~~~~~~~~~~~~~~~~ 191 (333)
+...+--. +. .++|.++++.+
T Consensus 540 e~~Q~~~i-----qp-de~~~~~~i~~ 560 (625)
T KOG1707|consen 540 EVPQRYSI-----QP-DEFCRQLGLPP 560 (625)
T ss_pred hhhhccCC-----Ch-HHHHHhcCCCC
Confidence 76432222 33 78999999864
No 272
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.25 E-value=6.8e-11 Score=112.87 Aligned_cols=159 Identities=15% Similarity=0.216 Sum_probs=111.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCC---------C--CCcccceeEEE--EEEEeCCCCCCCCccCCCCCceEEEEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS--SFS---------R--PSQTIGCTVGV--KHITYGSSGSSSNSIKGDSERDFFVEL 87 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~--~~~---------~--~~~t~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~l~i 87 (333)
+..||-.---|||||..|++... +.. . -...-|+++.. ..+.|.. .++..+.+++
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~----------~~g~~Y~lnl 80 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKA----------KDGETYVLNL 80 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEe----------CCCCEEEEEE
Confidence 67888888899999999998431 111 0 01112333333 3333321 3468899999
Q ss_pred EeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc
Q 019959 88 WDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE 167 (333)
Q Consensus 88 ~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~ 167 (333)
.|||||-+|.-.....+..|.+.++|+|+++.-.-+.+...+..+.. +.-||-|.||+||...+
T Consensus 81 IDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----------------~LeIiPViNKIDLP~Ad 144 (603)
T COG0481 81 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----------------NLEIIPVLNKIDLPAAD 144 (603)
T ss_pred cCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----------------CcEEEEeeecccCCCCC
Confidence 99999998876666668889999999999998777777777766644 56799999999998764
Q ss_pred CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 168 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
. ....+++..-.|+.. ..-+.+|||+|.|++++++.+++.
T Consensus 145 p--------ervk~eIe~~iGid~-------------~dav~~SAKtG~gI~~iLe~Iv~~ 184 (603)
T COG0481 145 P--------ERVKQEIEDIIGIDA-------------SDAVLVSAKTGIGIEDVLEAIVEK 184 (603)
T ss_pred H--------HHHHHHHHHHhCCCc-------------chheeEecccCCCHHHHHHHHHhh
Confidence 3 133445555567642 122349999999999988887754
No 273
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=9.5e-11 Score=110.64 Aligned_cols=162 Identities=17% Similarity=0.233 Sum_probs=103.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC--CCCC---------------------------CCCcccceeEEEEEEEeCCCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG--SSFS---------------------------RPSQTIGCTVGVKHITYGSSG 69 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~--~~~~---------------------------~~~~t~~~~~~~~~~~~~~~~ 69 (333)
..+++++++|...+|||||+-+|+.+ .+.. .....-|.++......+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fe--- 81 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFE--- 81 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEee---
Confidence 45789999999999999999999843 1110 001112333434444333
Q ss_pred CCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCccc---HHH---HHHHHHHHHhcCCCCCCCC
Q 019959 70 SSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRT---KTS---LQKWAVEIATSGTFSAPLA 143 (333)
Q Consensus 70 ~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S---~~~---l~~~~~~i~~~~~~~~~~~ 143 (333)
...+.+.|.|+||+..|......-..+||+.|||+|+.+.+. |.- .+..+-.....+
T Consensus 82 ----------t~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG------- 144 (428)
T COG5256 82 ----------TDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG------- 144 (428)
T ss_pred ----------cCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-------
Confidence 345679999999999988777777889999999999988742 111 111111122221
Q ss_pred CCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHH
Q 019959 144 SGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKE 220 (333)
Q Consensus 144 ~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~ 220 (333)
---+||+.||+|+.+-+ +---.++..+...+.+..|...- +++|+. |||.+|.|+.+
T Consensus 145 -------i~~lIVavNKMD~v~wd--e~rf~ei~~~v~~l~k~~G~~~~--~v~FIP---------iSg~~G~Nl~~ 201 (428)
T COG5256 145 -------IKQLIVAVNKMDLVSWD--EERFEEIVSEVSKLLKMVGYNPK--DVPFIP---------ISGFKGDNLTK 201 (428)
T ss_pred -------CceEEEEEEcccccccC--HHHHHHHHHHHHHHHHHcCCCcc--CCeEEe---------cccccCCcccc
Confidence 12488899999998642 22222334555556666665421 367777 99999998854
No 274
>PRK09866 hypothetical protein; Provisional
Probab=99.23 E-value=4.3e-10 Score=112.07 Aligned_cols=113 Identities=17% Similarity=0.194 Sum_probs=69.9
Q ss_pred EEEEEEeCCCchh-----hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEE
Q 019959 83 FFVELWDISGHER-----YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVI 157 (333)
Q Consensus 83 ~~l~i~Dt~G~e~-----~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivV 157 (333)
..+.|.||||... ........+..+|+|++|+|+++..+..+. ..+..+.... .+.|+++|
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~~-------------K~~PVILV 295 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAVG-------------QSVPLYVL 295 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhcC-------------CCCCEEEE
Confidence 3577899999532 222333468899999999999886554442 2344454442 13699999
Q ss_pred eeCcCCCCccCCccCcccHHHHHHHHHHHc---CCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 158 GNKADVAAKEGTRGSSGNLVDAARQWVEKQ---GLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 158 gNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~---~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
.||+|+.+.. ... .+....+.... ....+. .+|. +||++|.|++++++.+..
T Consensus 296 VNKIDl~dre--edd----kE~Lle~V~~~L~q~~i~f~---eIfP---------VSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 296 VNKFDQQDRN--SDD----ADQVRALISGTLMKGCITPQ---QIFP---------VSSMWGYLANRARHELAN 350 (741)
T ss_pred EEcccCCCcc--cch----HHHHHHHHHHHHHhcCCCCc---eEEE---------EeCCCCCCHHHHHHHHHh
Confidence 9999986431 111 13444443321 111111 2333 999999999988888765
No 275
>PRK12739 elongation factor G; Reviewed
Probab=99.23 E-value=1.9e-10 Score=119.05 Aligned_cols=116 Identities=17% Similarity=0.158 Sum_probs=81.5
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCC--CC-----C-----------CCCcccceeEEEEEEEeCCCCCCCCccCCCCCc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGS--SF-----S-----------RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~--~~-----~-----------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 81 (333)
...+|+|+|..++|||||+++|+... .. . +....+..+.....+.+ .
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~---------------~ 71 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW---------------K 71 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE---------------C
Confidence 45689999999999999999997421 00 0 01122233333333333 2
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
..++.++||||+.+|.......+..+|++|+|+|+++...-+... .+..+... ++|+|++.||+
T Consensus 72 ~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~-i~~~~~~~---------------~~p~iv~iNK~ 135 (691)
T PRK12739 72 GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSET-VWRQADKY---------------GVPRIVFVNKM 135 (691)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH-HHHHHHHc---------------CCCEEEEEECC
Confidence 567999999999888888888899999999999998875544333 33334343 57999999999
Q ss_pred CCCCc
Q 019959 162 DVAAK 166 (333)
Q Consensus 162 Dl~~~ 166 (333)
|+...
T Consensus 136 D~~~~ 140 (691)
T PRK12739 136 DRIGA 140 (691)
T ss_pred CCCCC
Confidence 99854
No 276
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.22 E-value=3e-11 Score=110.35 Aligned_cols=155 Identities=17% Similarity=0.131 Sum_probs=110.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC---------c
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG---------H 93 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G---------~ 93 (333)
-|+|||++|+|||||+++|+..........+.++|.+.....+++ ...+.+.||.| .
T Consensus 180 viavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lps--------------g~~vlltDTvGFisdLP~~Lv 245 (410)
T KOG0410|consen 180 VIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPS--------------GNFVLLTDTVGFISDLPIQLV 245 (410)
T ss_pred eEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCC--------------CcEEEEeechhhhhhCcHHHH
Confidence 799999999999999999997777666677777777777776653 23478899999 3
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
..|..+... ...+|.+|+|.|++.+..-++....+..+...+-.+.| ...-++=|-||+|...... .
T Consensus 246 aAF~ATLee-VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~p--------kl~~mieVdnkiD~e~~~~---e- 312 (410)
T KOG0410|consen 246 AAFQATLEE-VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEP--------KLQNMIEVDNKIDYEEDEV---E- 312 (410)
T ss_pred HHHHHHHHH-HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHH--------HHhHHHhhccccccccccC---c-
Confidence 456665554 56899999999999999877777777777776431111 1223566788998875421 1
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.++.+- +.+||++|.|+++.++.+-..+...
T Consensus 313 ----------~E~n~~------------------v~isaltgdgl~el~~a~~~kv~~~ 343 (410)
T KOG0410|consen 313 ----------EEKNLD------------------VGISALTGDGLEELLKAEETKVASE 343 (410)
T ss_pred ----------cccCCc------------------cccccccCccHHHHHHHHHHHhhhh
Confidence 112221 1289999998888887776665543
No 277
>PRK00007 elongation factor G; Reviewed
Probab=99.18 E-value=3.9e-10 Score=116.75 Aligned_cols=132 Identities=17% Similarity=0.220 Sum_probs=88.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHc--CCCCC----C------------CCcccceeEEEEEEEeCCCCCCCCccCCCCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVK--GSSFS----R------------PSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~--~~~~~----~------------~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (333)
....+|+|+|..++|||||+++|+. +.... . ....++.+.....+.+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~--------------- 72 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW--------------- 72 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE---------------
Confidence 3445999999999999999999973 21100 0 1112222222333333
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
....+.|.||||+.+|.......+..+|++|+|+|+.....-+....|. .+... ++|+|++.||
T Consensus 73 ~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~~---------------~~p~iv~vNK 136 (693)
T PRK00007 73 KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADKY---------------KVPRIAFVNK 136 (693)
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHHc---------------CCCEEEEEEC
Confidence 2567999999999888776667788999999999998776555444343 34444 5789999999
Q ss_pred cCCCCccCCccCcccHHHHHHHHHHHcCC
Q 019959 161 ADVAAKEGTRGSSGNLVDAARQWVEKQGL 189 (333)
Q Consensus 161 ~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~ 189 (333)
+|+...+. .+...++.+.++.
T Consensus 137 ~D~~~~~~--------~~~~~~i~~~l~~ 157 (693)
T PRK00007 137 MDRTGADF--------YRVVEQIKDRLGA 157 (693)
T ss_pred CCCCCCCH--------HHHHHHHHHHhCC
Confidence 99986421 2344555555664
No 278
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.18 E-value=9.6e-10 Score=107.93 Aligned_cols=180 Identities=22% Similarity=0.283 Sum_probs=114.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
-.|+|+|+.++|||||+.+|.+. +.+..+.+++|..-.+.-+ +.+....+.+|-+.|...+..+..
T Consensus 26 k~vlvlG~~~~GKttli~~L~~~---e~~~~~~aLeYty~~v~d~-----------~~dd~~rl~vw~L~g~~~~~~LLk 91 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQGI---EDPKKGLALEYTYLDVKDE-----------DRDDLARLNVWELDGDPSHSDLLK 91 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhcc---CCCCCCcccceEEEeeccC-----------cCCcCceeeEEEcCCCcchHhHhc
Confidence 48999999999999999998764 3456677887766554322 223456789999998777777776
Q ss_pred hhccC----CcEEEEEEECCCcccH-HHHHHHHHHHHhcCC----------------------CCC--------------
Q 019959 102 ILYSQ----INGVIFVHDLSQRRTK-TSLQKWAVEIATSGT----------------------FSA-------------- 140 (333)
Q Consensus 102 ~~~~~----ad~vIlV~D~s~~~S~-~~l~~~~~~i~~~~~----------------------~~~-------------- 140 (333)
..+.. --+||+|.|++.++.+ +.|..|+..+.++.. +..
T Consensus 92 ~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~ 171 (472)
T PF05783_consen 92 FALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRS 171 (472)
T ss_pred ccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccc
Confidence 65542 3488999999999875 457777765543310 000
Q ss_pred -------------CCCCCC-CCCCCCcEEEEeeCcCCCCccCCcc--C---cccHHHHHHHHHHHcCCCCCCcCCCcccc
Q 019959 141 -------------PLASGG-PGGLPVPYVVIGNKADVAAKEGTRG--S---SGNLVDAARQWVEKQGLLPSSEELPLTES 201 (333)
Q Consensus 141 -------------~~~~~~-~~~~~~PiivVgNK~Dl~~~~~r~v--~---~~~~~~~~~~~~~~~~~~~~~~~~p~~E~ 201 (333)
|++.+- -.+..+||+||++|+|....-.++. . ..-|.+..+.+|-.+|+
T Consensus 172 ~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA------------ 239 (472)
T PF05783_consen 172 PSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA------------ 239 (472)
T ss_pred ccccccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC------------
Confidence 000000 1223689999999999753211111 1 11122445556666664
Q ss_pred CCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 202 FPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 202 ~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+.++||++...|++.++..|++.+..
T Consensus 240 ----sL~yts~~~~~n~~~L~~yi~h~l~~ 265 (472)
T PF05783_consen 240 ----SLIYTSVKEEKNLDLLYKYILHRLYG 265 (472)
T ss_pred ----eEEEeeccccccHHHHHHHHHHHhcc
Confidence 34449999998887777776665544
No 279
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.17 E-value=5.6e-11 Score=107.91 Aligned_cols=95 Identities=14% Similarity=0.181 Sum_probs=73.5
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
++|..+.+.+++++|++++|||++++. +|..+..|+..+... ++|++||+||+||.+. +.+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~---------------~i~~vIV~NK~DL~~~--~~~~ 86 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQ---------------NIEPIIVLNKIDLLDD--EDME 86 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHC---------------CCCEEEEEECcccCCC--HHHH
Confidence 778888888999999999999999887 899999999876543 6899999999999754 2222
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
.+.+..+. ..| +++++ +||++|.|++++++.+.
T Consensus 87 ----~~~~~~~~-~~g-------~~v~~---------~SAktg~gi~eLf~~l~ 119 (245)
T TIGR00157 87 ----KEQLDIYR-NIG-------YQVLM---------TSSKNQDGLKELIEALQ 119 (245)
T ss_pred ----HHHHHHHH-HCC-------CeEEE---------EecCCchhHHHHHhhhc
Confidence 13333333 344 45777 99999988888887665
No 280
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.15 E-value=2.1e-10 Score=110.09 Aligned_cols=167 Identities=16% Similarity=0.160 Sum_probs=109.3
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch---
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE--- 94 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e--- 94 (333)
-+..-.++|+|.+|||||||++.++.......+.++.+-.+..-++. -+...+++.||||.-
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~d---------------ykYlrwQViDTPGILD~p 229 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLD---------------YKYLRWQVIDTPGILDRP 229 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhh---------------hheeeeeecCCccccCcc
Confidence 45556899999999999999999987766554444333333333333 345678999999921
Q ss_pred -hhhhhHHh----hcc-CCcEEEEEEECCCcc--cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 95 -RYKDCRSI----LYS-QINGVIFVHDLSQRR--TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 95 -~~~~~~~~----~~~-~ad~vIlV~D~s~~~--S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
+-+++... .+. --.+|+++.|+|... |...--+.++.|+.... +.|+|+|.||+|+...
T Consensus 230 lEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-------------NK~~IlvlNK~D~m~~ 296 (620)
T KOG1490|consen 230 EEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-------------NKVTILVLNKIDAMRP 296 (620)
T ss_pred hhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-------------CCceEEEeecccccCc
Confidence 11111111 111 134789999998764 55555567788877753 8899999999999765
Q ss_pred cCCccCcccHHHHHHHHHH---HcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 167 EGTRGSSGNLVDAARQWVE---KQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~---~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++ ++ ++-+++.. .-| ++++++ +|+.+.+||.++-...++.++..+.
T Consensus 297 ed--L~-----~~~~~ll~~~~~~~------~v~v~~---------tS~~~eegVm~Vrt~ACe~LLa~RV 345 (620)
T KOG1490|consen 297 ED--LD-----QKNQELLQTIIDDG------NVKVVQ---------TSCVQEEGVMDVRTTACEALLAARV 345 (620)
T ss_pred cc--cC-----HHHHHHHHHHHhcc------CceEEE---------ecccchhceeeHHHHHHHHHHHHHH
Confidence 32 22 22222222 223 256777 9999999999888888888777654
No 281
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.09 E-value=9.6e-10 Score=101.72 Aligned_cols=154 Identities=16% Similarity=0.154 Sum_probs=108.2
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCC---------------------------------CCCCCcccceeEEEEEEEe
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSS---------------------------------FSRPSQTIGCTVGVKHITY 65 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~---------------------------------~~~~~~t~~~~~~~~~~~~ 65 (333)
...++++.+|.---|||||+-||+.+.- ..+..+.|++|+..+.+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 3457999999999999999999986531 0123455666777776654
Q ss_pred CCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHH--HHHHHHhcCCCCCCCC
Q 019959 66 GSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQK--WAVEIATSGTFSAPLA 143 (333)
Q Consensus 66 ~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~--~~~~i~~~~~~~~~~~ 143 (333)
...++.|-|||||+.|....-.-...||+.|+++|+-..- .+.-+. ++..+...
T Consensus 84 ---------------~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLLGI-------- 139 (431)
T COG2895 84 ---------------EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLLGI-------- 139 (431)
T ss_pred ---------------ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHhCC--------
Confidence 3567899999999999776666677899999999994432 222211 22222211
Q ss_pred CCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHH
Q 019959 144 SGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDK 219 (333)
Q Consensus 144 ~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~ 219 (333)
..++|+.||+||.+- .+-...+|.++-..|+.++|+.. ..|+. +||..|.|+-
T Consensus 140 --------rhvvvAVNKmDLvdy--~e~~F~~I~~dy~~fa~~L~~~~----~~~IP---------iSAl~GDNV~ 192 (431)
T COG2895 140 --------RHVVVAVNKMDLVDY--SEEVFEAIVADYLAFAAQLGLKD----VRFIP---------ISALLGDNVV 192 (431)
T ss_pred --------cEEEEEEeeeccccc--CHHHHHHHHHHHHHHHHHcCCCc----ceEEe---------chhccCCccc
Confidence 347888999999976 33444556677888999999763 34555 9999998873
No 282
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.08 E-value=2.6e-09 Score=97.12 Aligned_cols=125 Identities=19% Similarity=0.136 Sum_probs=72.0
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRP-SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
.....++|+|+|.+|||||||+|++++....... ....+.......... ....+.+|||||-..
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~---------------~g~~i~vIDTPGl~~ 91 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTV---------------DGFKLNIIDTPGLLE 91 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE---------------CCeEEEEEECCCcCc
Confidence 3556689999999999999999999987543211 111111121112222 235689999999543
Q ss_pred hh-----h--h---HHhhcc--CCcEEEEEEECCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 96 YK-----D--C---RSILYS--QINGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 96 ~~-----~--~---~~~~~~--~ad~vIlV~D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
.. . . ...++. ..|++++|..++... .+.. ...+..|.+.... ..-.++++|.||+|
T Consensus 92 ~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~----------~i~~~~ivV~T~~d 160 (249)
T cd01853 92 SVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGP----------SIWRNAIVVLTHAA 160 (249)
T ss_pred chhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhCh----------hhHhCEEEEEeCCc
Confidence 31 0 0 112332 578888887666432 2332 2333334332110 01256999999999
Q ss_pred CCCcc
Q 019959 163 VAAKE 167 (333)
Q Consensus 163 l~~~~ 167 (333)
....+
T Consensus 161 ~~~p~ 165 (249)
T cd01853 161 SSPPD 165 (249)
T ss_pred cCCCC
Confidence 87553
No 283
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.07 E-value=9e-10 Score=116.15 Aligned_cols=147 Identities=16% Similarity=0.186 Sum_probs=89.5
Q ss_pred CchhhhhhhhhccCCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCC-CC----------CC---cccceeEE--EEEEE
Q 019959 1 MFWKERERENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSF-SR----------PS---QTIGCTVG--VKHIT 64 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~----------~~---~t~~~~~~--~~~~~ 64 (333)
|.|..++.-.+-++. +...-+|+|+|..++|||||+.+|+...-. .. +. ..-|.++. ...+.
T Consensus 1 ~~~~~~~~~~~~~~~--~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~ 78 (843)
T PLN00116 1 MVKFTAEELRRIMDK--KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLY 78 (843)
T ss_pred CCccCHHHHHHHhhC--ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEE
Confidence 555555433333332 334559999999999999999999843210 00 00 00111111 11222
Q ss_pred eCCCCCCCCccC-CCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCC
Q 019959 65 YGSSGSSSNSIK-GDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLA 143 (333)
Q Consensus 65 ~~~~~~~~~~i~-~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~ 143 (333)
+......-.+.. ...+..+.++|+||||+.+|.......++.+|++|+|+|+...........|.. +...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~~~-------- 149 (843)
T PLN00116 79 YEMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALGE-------- 149 (843)
T ss_pred eecccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-HHHC--------
Confidence 210000000000 012346889999999999998888888899999999999998765444444543 3333
Q ss_pred CCCCCCCCCcEEEEeeCcCCCC
Q 019959 144 SGGPGGLPVPYVVIGNKADVAA 165 (333)
Q Consensus 144 ~~~~~~~~~PiivVgNK~Dl~~ 165 (333)
++|+|++.||+|+..
T Consensus 150 -------~~p~i~~iNK~D~~~ 164 (843)
T PLN00116 150 -------RIRPVLTVNKMDRCF 164 (843)
T ss_pred -------CCCEEEEEECCcccc
Confidence 689999999999873
No 284
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.07 E-value=3.2e-09 Score=98.50 Aligned_cols=122 Identities=21% Similarity=0.208 Sum_probs=70.6
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFS-RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
...++|+|+|.+|||||||+|+|++..... ......+.......... ....+.++||||..+..
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~---------------~G~~l~VIDTPGL~d~~ 100 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR---------------AGFTLNIIDTPGLIEGG 100 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE---------------CCeEEEEEECCCCCchH
Confidence 456899999999999999999999875421 11111122211111112 24679999999955432
Q ss_pred hh-------HHhhc--cCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 98 DC-------RSILY--SQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 98 ~~-------~~~~~--~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
.. ...++ ...|++|+|..++... +... ...+..+..... ...-.++|||.|++|....
T Consensus 101 ~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG----------~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 101 YINDQAVNIIKRFLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFG----------KDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHHHHHHHHHHHHhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhh----------hhhhccEEEEEECCccCCC
Confidence 21 11112 2699999996655321 2211 223333433321 0113468999999997754
No 285
>PTZ00258 GTP-binding protein; Provisional
Probab=99.05 E-value=2.6e-09 Score=102.45 Aligned_cols=100 Identities=15% Similarity=0.137 Sum_probs=58.3
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCC--CCccCCCCCceEEEEEEeCCCchh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSS--SNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
....++|+|||.+|||||||+|+|++........+..+.+...-.+.+....-. .............+.++||||...
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 455679999999999999999999877654443343343333333433210000 000000001134589999999321
Q ss_pred ----hhhhH---HhhccCCcEEEEEEECC
Q 019959 96 ----YKDCR---SILYSQINGVIFVHDLS 117 (333)
Q Consensus 96 ----~~~~~---~~~~~~ad~vIlV~D~s 117 (333)
...+. ...++.+|++++|+|..
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 11222 22367899999999984
No 286
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.04 E-value=2e-09 Score=102.72 Aligned_cols=168 Identities=17% Similarity=0.228 Sum_probs=113.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCC------------CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS--SFS------------RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELW 88 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~--~~~------------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~ 88 (333)
+|+||-.---|||||+..|+... |.. .-...-|+++..|...+. -+.++++|.
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~-------------~~~~~INIv 73 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVN-------------YNGTRINIV 73 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceee-------------cCCeEEEEe
Confidence 79999999999999999999542 221 111223555555554443 456889999
Q ss_pred eCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC
Q 019959 89 DISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 168 (333)
Q Consensus 89 Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~ 168 (333)
|||||.+|.......+.-.|++++++|+....- -+.+..+...... +.+-|||.||+|......
T Consensus 74 DTPGHADFGGEVERvl~MVDgvlLlVDA~EGpM-PQTrFVlkKAl~~---------------gL~PIVVvNKiDrp~Arp 137 (603)
T COG1217 74 DTPGHADFGGEVERVLSMVDGVLLLVDASEGPM-PQTRFVLKKALAL---------------GLKPIVVINKIDRPDARP 137 (603)
T ss_pred cCCCcCCccchhhhhhhhcceEEEEEEcccCCC-CchhhhHHHHHHc---------------CCCcEEEEeCCCCCCCCH
Confidence 999999999999899999999999999987532 1122333333343 456677889999987643
Q ss_pred CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcC------HHHHHHHHHHHHHHHH
Q 019959 169 TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY------DKEAVMKFFRMLIRRR 233 (333)
Q Consensus 169 r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~------v~~~~~~l~~~l~~~~ 233 (333)
..| ++++-.+.-.++...---+.|++. .||+.|.- -.+.+.-||+.++++.
T Consensus 138 ~~V-----vd~vfDLf~~L~A~deQLdFPivY---------AS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 138 DEV-----VDEVFDLFVELGATDEQLDFPIVY---------ASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred HHH-----HHHHHHHHHHhCCChhhCCCcEEE---------eeccCceeccCccccccchhHHHHHHHHhC
Confidence 333 366666666666532222356655 88888752 2345777777777653
No 287
>PRK13768 GTPase; Provisional
Probab=99.04 E-value=1.3e-09 Score=99.50 Aligned_cols=70 Identities=21% Similarity=0.180 Sum_probs=45.2
Q ss_pred EEEEEeCCCchhhh---hhHHhh---ccC--CcEEEEEEECCCcccHHHH--HHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q 019959 84 FVELWDISGHERYK---DCRSIL---YSQ--INGVIFVHDLSQRRTKTSL--QKWAVEIATSGTFSAPLASGGPGGLPVP 153 (333)
Q Consensus 84 ~l~i~Dt~G~e~~~---~~~~~~---~~~--ad~vIlV~D~s~~~S~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~P 153 (333)
.+.+||+||+.++. .....+ +.. ++++++|+|++...+...+ ..|+....... .++|
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-------------~~~~ 164 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-------------LGLP 164 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-------------cCCC
Confidence 58899999976642 232222 222 8999999999765543332 23333322221 2689
Q ss_pred EEEEeeCcCCCCc
Q 019959 154 YVVIGNKADVAAK 166 (333)
Q Consensus 154 iivVgNK~Dl~~~ 166 (333)
+++|+||+|+...
T Consensus 165 ~i~v~nK~D~~~~ 177 (253)
T PRK13768 165 QIPVLNKADLLSE 177 (253)
T ss_pred EEEEEEhHhhcCc
Confidence 9999999999865
No 288
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.03 E-value=4.4e-09 Score=99.07 Aligned_cols=135 Identities=14% Similarity=0.199 Sum_probs=85.0
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCc----------ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR----------RTKTSLQKWAVEIATSGTFSAPLASGGPGGL 150 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~----------~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 150 (333)
..+.+.+||++|+...+..|..++.++++||+|+|+++- ..+.+....+..+.....+ .
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~-----------~ 227 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF-----------A 227 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc-----------c
Confidence 346788999999999999999999999999999999974 2344444455555544322 3
Q ss_pred CCcEEEEeeCcCCCCccCCc-----------cCcccHHHHHHHHHHHcCCCCCCc-CCCccccCCCCCceeeeeccCcCH
Q 019959 151 PVPYVVIGNKADVAAKEGTR-----------GSSGNLVDAARQWVEKQGLLPSSE-ELPLTESFPGGGGLIAAAKEARYD 218 (333)
Q Consensus 151 ~~PiivVgNK~Dl~~~~~r~-----------v~~~~~~~~~~~~~~~~~~~~~~~-~~p~~E~~~~~~~~~~SAk~g~~v 218 (333)
+.|++|++||.|+..+.-.. ... .-.+.+..+....-...... +-+++- ..++|..-.++
T Consensus 228 ~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~-~~~~~~~~~i~~~F~~~~~~~~~~~~~-------~~t~a~Dt~~i 299 (317)
T cd00066 228 NTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPP-NDYEEAAKFIRKKFLDLNRNPNKEIYP-------HFTCATDTENI 299 (317)
T ss_pred CCCEEEEccChHHHHHhhcCCCccccCCCCCCCC-CCHHHHHHHHHHHHHHhhcCCCCeEEE-------EeccccchHHH
Confidence 78999999999975432110 001 11344444443311100000 011111 12788888888
Q ss_pred HHHHHHHHHHHHHHHh
Q 019959 219 KEAVMKFFRMLIRRRY 234 (333)
Q Consensus 219 ~~~~~~l~~~l~~~~~ 234 (333)
..+|+.+.+.+++..+
T Consensus 300 ~~vf~~v~~~i~~~~l 315 (317)
T cd00066 300 RFVFDAVKDIILQNNL 315 (317)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888888887776543
No 289
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.02 E-value=9.8e-10 Score=96.19 Aligned_cols=125 Identities=19% Similarity=0.353 Sum_probs=86.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh-
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC- 99 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~- 99 (333)
-||+++|.+|+|||||--.+..+... ....++.++|+...++.+- .+..+.+||.+|++.+...
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rfl--------------Gnl~LnlwDcGgqe~fmen~ 70 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFL--------------GNLVLNLWDCGGQEEFMENY 70 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhh--------------hhheeehhccCCcHHHHHHH
Confidence 38999999999999987666644221 1223333445666665553 2467999999999865432
Q ss_pred ----HHhhccCCcEEEEEEECCCcccHHHH---HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 100 ----RSILYSQINGVIFVHDLSQRRTKTSL---QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 100 ----~~~~~~~ad~vIlV~D~s~~~S~~~l---~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
....++..+++|+|||++..+-..++ ++.++.+.++. +...+++...|+||...+.+++.
T Consensus 71 ~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-------------P~AkiF~l~hKmDLv~~d~r~~i 137 (295)
T KOG3886|consen 71 LSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS-------------PEAKIFCLLHKMDLVQEDARELI 137 (295)
T ss_pred HhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-------------CcceEEEEEeechhcccchHHHH
Confidence 33467899999999999988644444 44555555553 46788899999999987666655
Q ss_pred c
Q 019959 173 S 173 (333)
Q Consensus 173 ~ 173 (333)
.
T Consensus 138 f 138 (295)
T KOG3886|consen 138 F 138 (295)
T ss_pred H
Confidence 4
No 290
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.00 E-value=2.7e-09 Score=95.74 Aligned_cols=29 Identities=34% Similarity=0.517 Sum_probs=24.6
Q ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHH
Q 019959 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 14 ~~~~~~~~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
.++......-|+|||-.|+|||||++||.
T Consensus 12 a~~~~~~p~~ilVvGMAGSGKTTF~QrL~ 40 (366)
T KOG1532|consen 12 ASGAIQRPVIILVVGMAGSGKTTFMQRLN 40 (366)
T ss_pred ccccccCCcEEEEEecCCCCchhHHHHHH
Confidence 34556667789999999999999999997
No 291
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.00 E-value=6.7e-09 Score=93.12 Aligned_cols=111 Identities=18% Similarity=0.185 Sum_probs=68.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
.....|+|+|.+|+|||||++.+++..-........|. + .+.. ....++.++||+|.- ..
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i~~--------------~~~~~i~~vDtPg~~--~~ 96 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TVVT--------------GKKRRLTFIECPNDI--NA 96 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EEEe--------------cCCceEEEEeCCchH--HH
Confidence 33468999999999999999999864211111111111 1 1111 134568899999853 23
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcCCCCc
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAK 166 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~Dl~~~ 166 (333)
+. .....+|++++|+|++........ .++..+... +.| +++|.||+|+...
T Consensus 97 ~l-~~ak~aDvVllviDa~~~~~~~~~-~i~~~l~~~---------------g~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 97 MI-DIAKVADLVLLLIDASFGFEMETF-EFLNILQVH---------------GFPRVMGVLTHLDLFKK 148 (225)
T ss_pred HH-HHHHhcCEEEEEEecCcCCCHHHH-HHHHHHHHc---------------CCCeEEEEEeccccCCc
Confidence 32 236789999999999875543332 233334333 456 4569999998743
No 292
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.98 E-value=7.6e-09 Score=98.38 Aligned_cols=134 Identities=15% Similarity=0.210 Sum_probs=85.2
Q ss_pred EEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCc----------ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 019959 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR----------RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPV 152 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~----------~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 152 (333)
+.+.+||++|+...+..|..++.++++||+|+|+++- ..+......+..+.....+ .++
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~-----------~~~ 252 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF-----------ANT 252 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc-----------cCC
Confidence 4678999999999999999999999999999999974 2355555556666554332 379
Q ss_pred cEEEEeeCcCCCCccCCccC---------cccHHHHHHHHHHH-cCCCCCC-cCCCccccCCCCCceeeeeccCcCHHHH
Q 019959 153 PYVVIGNKADVAAKEGTRGS---------SGNLVDAARQWVEK-QGLLPSS-EELPLTESFPGGGGLIAAAKEARYDKEA 221 (333)
Q Consensus 153 PiivVgNK~Dl~~~~~r~v~---------~~~~~~~~~~~~~~-~~~~~~~-~~~p~~E~~~~~~~~~~SAk~g~~v~~~ 221 (333)
|++|++||.|+..+.-.... ..+-.+.+..+... +-..... .+-+++- ..|+|.+-.++..+
T Consensus 253 piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~-------h~t~a~Dt~~~~~v 325 (342)
T smart00275 253 SIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYH-------HFTCATDTRNIRVV 325 (342)
T ss_pred cEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEE-------EEeeecccHHHHHH
Confidence 99999999998543111000 00012344444332 2111000 0011211 23889988888888
Q ss_pred HHHHHHHHHHHHh
Q 019959 222 VMKFFRMLIRRRY 234 (333)
Q Consensus 222 ~~~l~~~l~~~~~ 234 (333)
|+.+...+++..+
T Consensus 326 ~~~v~~~I~~~~l 338 (342)
T smart00275 326 FDAVKDIILQRNL 338 (342)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877654
No 293
>PTZ00416 elongation factor 2; Provisional
Probab=98.98 E-value=3e-09 Score=112.10 Aligned_cols=125 Identities=20% Similarity=0.244 Sum_probs=80.9
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCC-CCCCC-------------cccceeEE--EEEEEeCCCCCCCCccCCCCCce
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSS-FSRPS-------------QTIGCTVG--VKHITYGSSGSSSNSIKGDSERD 82 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~~-------------~t~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~ 82 (333)
...-+|+|+|..++|||||+++|+...- ..... ..-|+++. ...+.+... .-....++.
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~-----~~~~~~~~~ 91 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHD-----LEDGDDKQP 91 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecc-----cccccCCCc
Confidence 3344999999999999999999985311 10000 00011111 112222100 000122456
Q ss_pred EEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
+.+.|+||||+.+|.......++.+|++|+|+|++..-.-.....| ..+... ++|+|++.||+|
T Consensus 92 ~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~~---------------~~p~iv~iNK~D 155 (836)
T PTZ00416 92 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQE---------------RIRPVLFINKVD 155 (836)
T ss_pred eEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHHc---------------CCCEEEEEEChh
Confidence 7899999999999988878889999999999999886544433334 344333 579999999999
Q ss_pred CC
Q 019959 163 VA 164 (333)
Q Consensus 163 l~ 164 (333)
+.
T Consensus 156 ~~ 157 (836)
T PTZ00416 156 RA 157 (836)
T ss_pred hh
Confidence 97
No 294
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.94 E-value=2.4e-08 Score=94.91 Aligned_cols=96 Identities=16% Similarity=0.154 Sum_probs=55.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCC--CCccCCCCCceEEEEEEeCCCchh----
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSS--SNSIKGDSERDFFVELWDISGHER---- 95 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~l~i~Dt~G~e~---- 95 (333)
++|+|||.+|||||||+|++++........+..+.+.....+.+...... ....+........+.+.|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 69999999999999999999987643333333333333334443310000 000000001123589999999322
Q ss_pred hhhhHHh---hccCCcEEEEEEECC
Q 019959 96 YKDCRSI---LYSQINGVIFVHDLS 117 (333)
Q Consensus 96 ~~~~~~~---~~~~ad~vIlV~D~s 117 (333)
...+... .++.+|++|+|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1222222 367899999999985
No 295
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=4.4e-08 Score=90.54 Aligned_cols=182 Identities=18% Similarity=0.189 Sum_probs=116.0
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcC----CCC---CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeC
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKG----SSF---SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDI 90 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~----~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt 90 (333)
++..+++.|+|.-.+|||+|.+++..- .|. ......+++|.....+.+..+. ....+....+.+.|+
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~pa------rLpq~e~lq~tlvDC 77 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPA------RLPQGEQLQFTLVDC 77 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeeccccc------ccCccccceeEEEeC
Confidence 455689999999999999999999732 222 1223344555555555443211 113466688999999
Q ss_pred CCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHH-HHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC
Q 019959 91 SGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQK-WAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT 169 (333)
Q Consensus 91 ~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~-~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r 169 (333)
||+...-.....-..-.|..++|+|+.....-+..+. .+.++. ....|||.||+|+..+..|
T Consensus 78 PGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-----------------c~klvvvinkid~lpE~qr 140 (522)
T KOG0461|consen 78 PGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-----------------CKKLVVVINKIDVLPENQR 140 (522)
T ss_pred CCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-----------------ccceEEEEeccccccchhh
Confidence 9986654444333445688899999987543333222 222221 2357888899998876544
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
... +.+.+..+.+-+....+-.+.|++| +||+.|+--++.+.++.+.+..+..
T Consensus 141 ~sk---i~k~~kk~~KtLe~t~f~g~~PI~~---------vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 141 ASK---IEKSAKKVRKTLESTGFDGNSPIVE---------VSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred hhH---HHHHHHHHHHHHHhcCcCCCCceeE---------EecCCCccchhHHHHHHHHHHHhhc
Confidence 322 2344555666555555555678888 9999997777777777766555443
No 296
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.93 E-value=4e-08 Score=93.71 Aligned_cols=119 Identities=17% Similarity=0.215 Sum_probs=75.6
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC----CCCCC----------CCcccc---eeEEE-----EEEEeCCCCCCCCccCC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG----SSFSR----------PSQTIG---CTVGV-----KHITYGSSGSSSNSIKG 77 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~----~~~~~----------~~~t~~---~~~~~-----~~~~~~~~~~~~~~i~~ 77 (333)
+.+-|.|+|+.++|||||+|+|.+. ..... .....| .+... +.+.+. .
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~----------~ 85 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEIN----------I 85 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEe----------c
Confidence 4588999999999999999999977 33211 111112 11111 222221 1
Q ss_pred CCCceEEEEEEeCCCc--------hhhhh---------------------hHHhhcc-CCcEEEEEE-ECC----CcccH
Q 019959 78 DSERDFFVELWDISGH--------ERYKD---------------------CRSILYS-QINGVIFVH-DLS----QRRTK 122 (333)
Q Consensus 78 ~~~~~~~l~i~Dt~G~--------e~~~~---------------------~~~~~~~-~ad~vIlV~-D~s----~~~S~ 122 (333)
.++....+.+.||+|- .+-.. -....+. ++|+.|+|. |.+ .++.+
T Consensus 86 ~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y 165 (492)
T TIGR02836 86 NEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDY 165 (492)
T ss_pred cCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccc
Confidence 3466788999999991 11111 0223344 899999998 764 12233
Q ss_pred HH-HHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC
Q 019959 123 TS-LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163 (333)
Q Consensus 123 ~~-l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl 163 (333)
.. -..|+.++++. ++|+++|.||+|-
T Consensus 166 ~~aEe~~i~eLk~~---------------~kPfiivlN~~dp 192 (492)
T TIGR02836 166 VEAEERVIEELKEL---------------NKPFIILLNSTHP 192 (492)
T ss_pred hHHHHHHHHHHHhc---------------CCCEEEEEECcCC
Confidence 33 35788888887 6899999999994
No 297
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.92 E-value=1.7e-08 Score=88.74 Aligned_cols=102 Identities=15% Similarity=0.080 Sum_probs=62.1
Q ss_pred EEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcE--EEEeeC
Q 019959 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY--VVIGNK 160 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pi--ivVgNK 160 (333)
....+.++.|..--..... .-+|.+|.|+|+++.++... .+.. .+.+ ++|+||
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~--------------------qi~~ad~~~~~k 146 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGP--------------------GITRSDLLVINK 146 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHh--------------------HhhhccEEEEEh
Confidence 4466778888321111111 12688999999997665321 1111 2333 789999
Q ss_pred cCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 161 ADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 161 ~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+|+.+... .. .+...+..+.++. ..++++ +||++|.|++++++.+.+.+
T Consensus 147 ~d~~~~~~--~~----~~~~~~~~~~~~~-----~~~i~~---------~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 147 IDLAPMVG--AD----LGVMERDAKKMRG-----EKPFIF---------TNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred hhcccccc--cc----HHHHHHHHHHhCC-----CCCEEE---------EECCCCCCHHHHHHHHHhhc
Confidence 99984211 11 2444555555432 256777 99999999999998887654
No 298
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.90 E-value=8.7e-09 Score=107.37 Aligned_cols=119 Identities=18% Similarity=0.225 Sum_probs=78.1
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCC-CCCCC-C-cc-----------cceeEEE--EEEEeCCCCCCCCccCCCCCceE
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGS-SFSRP-S-QT-----------IGCTVGV--KHITYGSSGSSSNSIKGDSERDF 83 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~-~~~~~-~-~t-----------~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~ 83 (333)
..-+|+|+|..++|||||+.+|+... .+... . .+ -|.++.. ..+.+. .++..+
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~-----------~~~~~~ 87 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHE-----------YEGKEY 87 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEE-----------ecCCcE
Confidence 34479999999999999999998432 11100 0 00 0111111 111110 013568
Q ss_pred EEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC
Q 019959 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163 (333)
Q Consensus 84 ~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl 163 (333)
.+.|+||||+.+|.......++.+|++|+|+|+.....-+....|.. +... ++|+|++.||+|+
T Consensus 88 ~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~~---------------~~~~iv~iNK~D~ 151 (731)
T PRK07560 88 LINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALRE---------------RVKPVLFINKVDR 151 (731)
T ss_pred EEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHHc---------------CCCeEEEEECchh
Confidence 89999999999998888888999999999999987654443344443 2232 4678899999998
Q ss_pred CC
Q 019959 164 AA 165 (333)
Q Consensus 164 ~~ 165 (333)
..
T Consensus 152 ~~ 153 (731)
T PRK07560 152 LI 153 (731)
T ss_pred hc
Confidence 64
No 299
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.88 E-value=1.2e-08 Score=86.65 Aligned_cols=63 Identities=21% Similarity=0.210 Sum_probs=45.8
Q ss_pred EEEEEeCCCchh----hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEee
Q 019959 84 FVELWDISGHER----YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 159 (333)
Q Consensus 84 ~l~i~Dt~G~e~----~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgN 159 (333)
.+.|+||||... ...+...++..+|++|+|.++++..+-.....|....... ...+++|.|
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---------------~~~~i~V~n 166 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---------------KSRTIFVLN 166 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---------------CSSEEEEEE
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---------------CCeEEEEEc
Confidence 388999999432 3356667789999999999999977666666666665544 234899999
Q ss_pred Cc
Q 019959 160 KA 161 (333)
Q Consensus 160 K~ 161 (333)
|+
T Consensus 167 k~ 168 (168)
T PF00350_consen 167 KA 168 (168)
T ss_dssp -G
T ss_pred CC
Confidence 85
No 300
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.85 E-value=9.3e-09 Score=97.78 Aligned_cols=166 Identities=16% Similarity=0.133 Sum_probs=79.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSR-PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
.++|+|+|++|+|||||||+|.+-.-... ..+|--+..+.....|..+ ..-.+.+||+||...-.--
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p------------~~pnv~lWDlPG~gt~~f~ 102 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP------------KFPNVTLWDLPGIGTPNFP 102 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S------------S-TTEEEEEE--GGGSS--
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC------------CCCCCeEEeCCCCCCCCCC
Confidence 47999999999999999999975321111 1111111111222222211 1112899999994322111
Q ss_pred H-----HhhccCCcEEEEEEECCCcccHHHHHH-HHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC--CC---ccC
Q 019959 100 R-----SILYSQINGVIFVHDLSQRRTKTSLQK-WAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV--AA---KEG 168 (333)
Q Consensus 100 ~-----~~~~~~ad~vIlV~D~s~~~S~~~l~~-~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl--~~---~~~ 168 (333)
. ..-+...|.+|++.+- .|..... ...++... +.|+.+|-+|+|. .. ...
T Consensus 103 ~~~Yl~~~~~~~yD~fiii~s~----rf~~ndv~La~~i~~~---------------gK~fyfVRTKvD~Dl~~~~~~~p 163 (376)
T PF05049_consen 103 PEEYLKEVKFYRYDFFIIISSE----RFTENDVQLAKEIQRM---------------GKKFYFVRTKVDSDLYNERRRKP 163 (376)
T ss_dssp HHHHHHHTTGGG-SEEEEEESS----S--HHHHHHHHHHHHT---------------T-EEEEEE--HHHHHHHHHCC-S
T ss_pred HHHHHHHccccccCEEEEEeCC----CCchhhHHHHHHHHHc---------------CCcEEEEEecccccHhhhhccCC
Confidence 1 1225578998887753 3444333 34556665 5799999999996 11 122
Q ss_pred CccCcccHHHHHHHHHHH----cCCCCCCcCCCccccCCCCCceeeeeccC--cCHHHHHHHHHHHHH
Q 019959 169 TRGSSGNLVDAARQWVEK----QGLLPSSEELPLTESFPGGGGLIAAAKEA--RYDKEAVMKFFRMLI 230 (333)
Q Consensus 169 r~v~~~~~~~~~~~~~~~----~~~~~~~~~~p~~E~~~~~~~~~~SAk~g--~~v~~~~~~l~~~l~ 230 (333)
+....+++.+.+++-|.+ .|+. +-++|= +|+.+- +....+.+.+.+.|-
T Consensus 164 ~~f~~e~~L~~IR~~c~~~L~k~gv~----~P~VFL---------VS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 164 RTFNEEKLLQEIRENCLENLQKAGVS----EPQVFL---------VSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp TT--HHTHHHHHHHHHHHHHHCTT-S----S--EEE---------B-TTTTTSTTHHHHHHHHHHHS-
T ss_pred cccCHHHHHHHHHHHHHHHHHHcCCC----cCceEE---------EeCCCcccCChHHHHHHHHHHhH
Confidence 445555555666666554 2332 123333 777643 445556666665543
No 301
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.84 E-value=1.5e-08 Score=89.64 Aligned_cols=165 Identities=13% Similarity=0.069 Sum_probs=83.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC------------CCCcccceeEEEEEEEeCCCCCCC-------CccCCCCCc
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFS------------RPSQTIGCTVGVKHITYGSSGSSS-------NSIKGDSER 81 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~------------~~~~t~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~ 81 (333)
...|+|+|..|+|||||+++++...... ......-.......+.+.++.-+. ..+......
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~~ 101 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPLD 101 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhccC
Confidence 4589999999999999999998531100 000000000001112222111000 000001111
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+.+.|.+|.|.-... ..+....+..+.|+|+++.+.... .. ..+ ...|.++|+||+
T Consensus 102 ~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~--~~-~~~-----------------~~~a~iiv~NK~ 158 (207)
T TIGR00073 102 DIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL--KY-PGM-----------------FKEADLIVINKA 158 (207)
T ss_pred CCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh--hh-HhH-----------------HhhCCEEEEEHH
Confidence 3356677777720000 011223455667788876543111 11 111 135789999999
Q ss_pred CCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 162 DVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 162 Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
|+.... ... .+...+..++.+- ..|+++ +||++|.|++++++.+.+.
T Consensus 159 Dl~~~~--~~~----~~~~~~~l~~~~~-----~~~i~~---------~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 159 DLAEAV--GFD----VEKMKADAKKINP-----EAEIIL---------MSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred Hccccc--hhh----HHHHHHHHHHhCC-----CCCEEE---------EECCCCCCHHHHHHHHHHh
Confidence 997531 111 1233333444331 256777 9999999999999888764
No 302
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=2.8e-08 Score=99.29 Aligned_cols=186 Identities=17% Similarity=0.133 Sum_probs=108.3
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCC----CCcccceeEEEEEEEeCCCCCCCCccCCCCC---ceEEEEEEeC
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSR----PSQTIGCTVGVKHITYGSSGSSSNSIKGDSE---RDFFVELWDI 90 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~l~i~Dt 90 (333)
..+..-|||+|.-..|||-|+..+-+..+... ..+.||.+|....-... --..+..+.. +.--+.++||
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e----~tk~~~~~~K~~~kvPg~lvIdt 547 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIRE----KTKELKKDAKKRLKVPGLLVIDT 547 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHH----HHHHHHhhhhhhcCCCeeEEecC
Confidence 34445799999999999999999986544332 23344544443220000 0000000000 0112788999
Q ss_pred CCchhhhhhHHhhccCCcEEEEEEECCCc---ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc
Q 019959 91 SGHERYKDCRSILYSQINGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE 167 (333)
Q Consensus 91 ~G~e~~~~~~~~~~~~ad~vIlV~D~s~~---~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~ 167 (333)
||++.|..++.....-||.+|+|+|+... .+.+.+. .++. .+.|+||++||+|....-
T Consensus 548 pghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~----lLR~---------------rktpFivALNKiDRLYgw 608 (1064)
T KOG1144|consen 548 PGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN----LLRM---------------RKTPFIVALNKIDRLYGW 608 (1064)
T ss_pred CCchhhhhhhhccccccceEEEEeehhccCCcchhHHHH----HHHh---------------cCCCeEEeehhhhhhccc
Confidence 99999999999999999999999999764 3444332 2222 278999999999976431
Q ss_pred CCccCcccHH-------------------HHHHHHHHH-cCCCCCCcCC---CccccCCCCCceeeeeccCcCHHHHHHH
Q 019959 168 GTRGSSGNLV-------------------DAARQWVEK-QGLLPSSEEL---PLTESFPGGGGLIAAAKEARYDKEAVMK 224 (333)
Q Consensus 168 ~r~v~~~~~~-------------------~~~~~~~~~-~~~~~~~~~~---p~~E~~~~~~~~~~SAk~g~~v~~~~~~ 224 (333)
. ......+. ....+|+.. ++...|+++- .|+- .+.+||.+|.||.+++-.
T Consensus 609 k-~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vs------iVPTSA~sGeGipdLl~l 681 (1064)
T KOG1144|consen 609 K-SCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVS------IVPTSAISGEGIPDLLLL 681 (1064)
T ss_pred c-cCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEE------eeecccccCCCcHHHHHH
Confidence 1 00000000 112223221 2222222211 1222 234999999999999988
Q ss_pred HHHHHHHHH
Q 019959 225 FFRMLIRRR 233 (333)
Q Consensus 225 l~~~l~~~~ 233 (333)
|++..-..+
T Consensus 682 lv~ltQk~m 690 (1064)
T KOG1144|consen 682 LVQLTQKTM 690 (1064)
T ss_pred HHHHHHHHH
Confidence 887665543
No 303
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=5.4e-08 Score=95.39 Aligned_cols=165 Identities=18% Similarity=0.208 Sum_probs=102.3
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcC--C--------------------CC-------CCCCcccceeEEEEEEEe
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKG--S--------------------SF-------SRPSQTIGCTVGVKHITY 65 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~--~--------------------~~-------~~~~~t~~~~~~~~~~~~ 65 (333)
...+..++.++|+|...+|||||+-+++.. . |. ......-|++...+...+
T Consensus 171 q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~f 250 (603)
T KOG0458|consen 171 QSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWF 250 (603)
T ss_pred ccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEE
Confidence 445567899999999999999999999743 1 00 011112244444444444
Q ss_pred CCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcc---cHH---HHHHHHHHHHhcCCCC
Q 019959 66 GSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR---TKT---SLQKWAVEIATSGTFS 139 (333)
Q Consensus 66 ~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~---S~~---~l~~~~~~i~~~~~~~ 139 (333)
+ .....+.|.|.||+..|......-...||+.|+|+|++... .|+ .......-++..+
T Consensus 251 e-------------s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--- 314 (603)
T KOG0458|consen 251 E-------------SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--- 314 (603)
T ss_pred e-------------cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC---
Confidence 3 34567999999999999877766778999999999998643 222 1222333333332
Q ss_pred CCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHH-HHcCCCCCCcCCCccccCCCCCceeeeeccCcCH
Q 019959 140 APLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWV-EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYD 218 (333)
Q Consensus 140 ~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~-~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v 218 (333)
---+||+.||+|+..-+.. -..+|......|. +..| |.| +...++.||+.+|.|+
T Consensus 315 -----------i~qlivaiNKmD~V~Wsq~--RF~eIk~~l~~fL~~~~g---------f~e--s~v~FIPiSGl~GeNL 370 (603)
T KOG0458|consen 315 -----------ISQLIVAINKMDLVSWSQD--RFEEIKNKLSSFLKESCG---------FKE--SSVKFIPISGLSGENL 370 (603)
T ss_pred -----------cceEEEEeecccccCccHH--HHHHHHHHHHHHHHHhcC---------ccc--CCcceEecccccCCcc
Confidence 2348899999999865321 1122333344444 3344 333 2234445999999887
Q ss_pred H
Q 019959 219 K 219 (333)
Q Consensus 219 ~ 219 (333)
-
T Consensus 371 ~ 371 (603)
T KOG0458|consen 371 I 371 (603)
T ss_pred c
Confidence 3
No 304
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.81 E-value=4.2e-08 Score=87.12 Aligned_cols=114 Identities=24% Similarity=0.230 Sum_probs=63.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC----CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh--
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRP----SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER-- 95 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~-- 95 (333)
++|+|+|.+|+||||++|.+++....... ..|..+.. ....+. ...+.++||||-.+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~--~~~~~~---------------g~~v~VIDTPGl~d~~ 63 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQK--YSGEVD---------------GRQVTVIDTPGLFDSD 63 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EE--EEEEET---------------TEEEEEEE--SSEETT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccce--eeeeec---------------ceEEEEEeCCCCCCCc
Confidence 58999999999999999999987654332 22323332 222332 36689999999211
Q ss_pred ------hhhh---HHhhccCCcEEEEEEECCCcccHHHH--HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 96 ------YKDC---RSILYSQINGVIFVHDLSQRRTKTSL--QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 96 ------~~~~---~~~~~~~ad~vIlV~D~s~~~S~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
...+ ......+.|+||+|+.++ +-+-... -.++..+-... .-.-+|||.|..|..
T Consensus 64 ~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~-------------~~k~~ivvfT~~d~~ 129 (212)
T PF04548_consen 64 GSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEE-------------IWKHTIVVFTHADEL 129 (212)
T ss_dssp EEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGG-------------GGGGEEEEEEEGGGG
T ss_pred ccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHH-------------HHhHhhHHhhhcccc
Confidence 1111 112345799999999998 3332222 22333332211 123478888888866
Q ss_pred Cc
Q 019959 165 AK 166 (333)
Q Consensus 165 ~~ 166 (333)
..
T Consensus 130 ~~ 131 (212)
T PF04548_consen 130 ED 131 (212)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 305
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.78 E-value=9.8e-08 Score=88.31 Aligned_cols=118 Identities=14% Similarity=0.286 Sum_probs=67.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC--------CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRP--------SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
.++|+|+|.+|+|||||+|.|++....... .......+......+. .++..+.+.|+||+|
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~-----------e~~~~l~LtiiDTpG 72 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELE-----------ENGVKLNLTIIDTPG 72 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEE-----------ETCEEEEEEEEEEC-
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEec-----------cCCcceEEEEEeCCC
Confidence 589999999999999999999976544332 1111223333333333 236788999999999
Q ss_pred ch------------------hhhhhHHh---------hccCCcEEEEEEECCCcc-cHHHHHHHHHHHHhcCCCCCCCCC
Q 019959 93 HE------------------RYKDCRSI---------LYSQINGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLAS 144 (333)
Q Consensus 93 ~e------------------~~~~~~~~---------~~~~ad~vIlV~D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~ 144 (333)
-. .|...... .=.+.|+++++++.+... +-.++ ..+.++..
T Consensus 73 fGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls~---------- 141 (281)
T PF00735_consen 73 FGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLSK---------- 141 (281)
T ss_dssp CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHTT----------
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhcc----------
Confidence 21 11111100 012579999999987532 22222 23333322
Q ss_pred CCCCCCCCcEEEEeeCcCCCCc
Q 019959 145 GGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 145 ~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
.+++|-|..|+|....
T Consensus 142 ------~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 142 ------RVNVIPVIAKADTLTP 157 (281)
T ss_dssp ------TSEEEEEESTGGGS-H
T ss_pred ------cccEEeEEecccccCH
Confidence 5789999999998764
No 306
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.74 E-value=2.8e-08 Score=89.79 Aligned_cols=70 Identities=17% Similarity=0.086 Sum_probs=36.7
Q ss_pred EEEEEeCCCchhhhhhHHhhc--------cCCcEEEEEEECCCcccH-HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcE
Q 019959 84 FVELWDISGHERYKDCRSILY--------SQINGVIFVHDLSQRRTK-TSLQKWAVEIATSGTFSAPLASGGPGGLPVPY 154 (333)
Q Consensus 84 ~l~i~Dt~G~e~~~~~~~~~~--------~~ad~vIlV~D~s~~~S~-~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pi 154 (333)
...|+|||||.++-..+.... ...-++|+++|.....+- ..+..++..+.-... .+.|.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~------------~~lP~ 159 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR------------LELPH 159 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH------------HTSEE
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh------------CCCCE
Confidence 578999999988765544332 345688999998755442 122333332221111 16899
Q ss_pred EEEeeCcCCCC
Q 019959 155 VVIGNKADVAA 165 (333)
Q Consensus 155 ivVgNK~Dl~~ 165 (333)
|.|.||+|+..
T Consensus 160 vnvlsK~Dl~~ 170 (238)
T PF03029_consen 160 VNVLSKIDLLS 170 (238)
T ss_dssp EEEE--GGGS-
T ss_pred EEeeeccCccc
Confidence 99999999987
No 307
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.74 E-value=3.1e-07 Score=92.31 Aligned_cols=124 Identities=18% Similarity=0.139 Sum_probs=74.1
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCC-CCCC--CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSS-FSRP--SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~--~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
+....++|+|+|.+|||||||+|.+++... .... ..|.. ........+ ...+.|+||||.
T Consensus 114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr--~~ei~~~id---------------G~~L~VIDTPGL 176 (763)
T TIGR00993 114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS--VQEIEGLVQ---------------GVKIRVIDTPGL 176 (763)
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE--EEEEEEEEC---------------CceEEEEECCCC
Confidence 445678999999999999999999998753 3222 11211 111111221 356899999994
Q ss_pred hhhh-------hh---HHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 94 ERYK-------DC---RSILYS--QINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 94 e~~~-------~~---~~~~~~--~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.... .+ ...++. .+|+||+|..++.......-..++..|...+.. ..-.-+|||.|..
T Consensus 177 ~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~----------~Iwk~tIVVFThg 246 (763)
T TIGR00993 177 KSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGP----------SIWFNAIVTLTHA 246 (763)
T ss_pred CccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCH----------HhHcCEEEEEeCC
Confidence 4321 11 112333 589999999886443322223455555544320 0123588999999
Q ss_pred CCCCcc
Q 019959 162 DVAAKE 167 (333)
Q Consensus 162 Dl~~~~ 167 (333)
|....+
T Consensus 247 D~lppd 252 (763)
T TIGR00993 247 ASAPPD 252 (763)
T ss_pred ccCCCC
Confidence 988643
No 308
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=5.5e-08 Score=89.19 Aligned_cols=182 Identities=15% Similarity=0.156 Sum_probs=107.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC---CCCCCCCccccee--EEEEEEEeCCCCC------CC--CccCC-CCCceEE
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG---SSFSRPSQTIGCT--VGVKHITYGSSGS------SS--NSIKG-DSERDFF 84 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~---~~~~~~~~t~~~~--~~~~~~~~~~~~~------~~--~~i~~-~~~~~~~ 84 (333)
...++|.+||.-.-|||||+.+|.+- .+.++....+.+. |....+.....+. +. ...++ ..+-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 56789999999999999999999853 2322222222211 1111111100000 00 01111 2234456
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
+.|.|.||+|-.....-.-..-.|+.|+|++++.+.---+....+..+.-.+ -.-+|+|-||+||.
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--------------ik~iiIvQNKIDlV 153 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--------------IKNIIIVQNKIDLV 153 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--------------cceEEEEeccccee
Confidence 8999999999876654443445799999999987543222233333333332 13589999999998
Q ss_pred CccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 165 AKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 165 ~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
..+ +... .++++++|.+- .+.++.|.+. +||..+.|++.+++.+.+.+-.
T Consensus 154 ~~E-~AlE---~y~qIk~FvkG----t~Ae~aPIIP---------iSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 154 SRE-RALE---NYEQIKEFVKG----TVAENAPIIP---------ISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred cHH-HHHH---HHHHHHHHhcc----cccCCCceee---------ehhhhccCHHHHHHHHHHhCCC
Confidence 753 1111 13444444432 2334566766 9999999999999888776543
No 309
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.73 E-value=6.3e-08 Score=91.30 Aligned_cols=112 Identities=15% Similarity=0.094 Sum_probs=66.5
Q ss_pred CceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEee
Q 019959 80 ERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 159 (333)
Q Consensus 80 ~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgN 159 (333)
...+.+.|.||+|...-... ....+|.+++|.+....+....+ ...+.+ +.-++|.|
T Consensus 146 ~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~---k~gi~E-----------------~aDIiVVN 202 (332)
T PRK09435 146 AAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGI---KKGIME-----------------LADLIVIN 202 (332)
T ss_pred ccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHH---Hhhhhh-----------------hhheEEee
Confidence 34577899999995422211 35579999999764444333332 222222 23479999
Q ss_pred CcCCCCccCCccCcccHHHHHHHHHHHcCCCCC---CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 160 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPS---SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 160 K~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~---~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
|+|+...... .....++...+.+... ....|++. +||+++.|++++++.+.+.+-
T Consensus 203 KaDl~~~~~a-------~~~~~el~~~L~l~~~~~~~w~~pVi~---------vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 203 KADGDNKTAA-------RRAAAEYRSALRLLRPKDPGWQPPVLT---------CSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred hhcccchhHH-------HHHHHHHHHHHhcccccccCCCCCEEE---------EECCCCCCHHHHHHHHHHHHH
Confidence 9999864211 1223333334443210 00135655 999999999999999887643
No 310
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.73 E-value=2.1e-07 Score=84.00 Aligned_cols=69 Identities=17% Similarity=0.145 Sum_probs=44.7
Q ss_pred EEEEEEeCCCchh-------------hhhhHHhhcc-CCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 019959 83 FFVELWDISGHER-------------YKDCRSILYS-QINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPG 148 (333)
Q Consensus 83 ~~l~i~Dt~G~e~-------------~~~~~~~~~~-~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~ 148 (333)
..+.|.||||-.. ...+...|++ ..+++++|+|++..-.-.........+...
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~------------- 191 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQ------------- 191 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHc-------------
Confidence 3588999999531 2234555677 456999999987543322322334444333
Q ss_pred CCCCcEEEEeeCcCCCCc
Q 019959 149 GLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 149 ~~~~PiivVgNK~Dl~~~ 166 (333)
..++++|.||+|..+.
T Consensus 192 --~~rti~ViTK~D~~~~ 207 (240)
T smart00053 192 --GERTIGVITKLDLMDE 207 (240)
T ss_pred --CCcEEEEEECCCCCCc
Confidence 5799999999999864
No 311
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.72 E-value=1.6e-07 Score=83.43 Aligned_cols=173 Identities=16% Similarity=0.187 Sum_probs=107.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh--
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER-- 95 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~-- 95 (333)
+.+..+|++||-|.||||||+..++............+++...-.+.|+ ...+++.|.||.-.
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~---------------ga~IQllDLPGIieGA 123 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYN---------------GANIQLLDLPGIIEGA 123 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEec---------------CceEEEecCccccccc
Confidence 3456799999999999999999998543322222222344455666665 34589999999322
Q ss_pred ----hhh-hHHhhccCCcEEEEEEECCCcccHHH-HHHHHHHHHhcCCCCCCCC------CCC-----------------
Q 019959 96 ----YKD-CRSILYSQINGVIFVHDLSQRRTKTS-LQKWAVEIATSGTFSAPLA------SGG----------------- 146 (333)
Q Consensus 96 ----~~~-~~~~~~~~ad~vIlV~D~s~~~S~~~-l~~~~~~i~~~~~~~~~~~------~~~----------------- 146 (333)
.+. ..-...+.||.|++|.|++..+--.. +..-+..+--......|.- .+|
T Consensus 124 sqgkGRGRQviavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i 203 (364)
T KOG1486|consen 124 SQGKGRGRQVIAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLI 203 (364)
T ss_pred ccCCCCCceEEEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHH
Confidence 111 11134678999999999998664332 2333333211100000000 000
Q ss_pred ------------------------------CCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCC
Q 019959 147 ------------------------------PGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEEL 196 (333)
Q Consensus 147 ------------------------------~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (333)
...--++++.|-||+|... .++...+|+..+-.
T Consensus 204 ~~ILheykI~Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs-----------~eevdrlAr~Pnsv------ 266 (364)
T KOG1486|consen 204 YTILHEYKIHNAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVS-----------IEEVDRLARQPNSV------ 266 (364)
T ss_pred HHHHHHHeeccceEEEecCCChHHHHHHHhccceEEEEEEEeeccceec-----------HHHHHHHhcCCCcE------
Confidence 0111367888999999764 37788888776532
Q ss_pred CccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 197 PLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 197 p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
.+|+.-..|++.+++.+++.+.--+.
T Consensus 267 ------------ViSC~m~lnld~lle~iWe~l~L~rv 292 (364)
T KOG1486|consen 267 ------------VISCNMKLNLDRLLERIWEELNLVRV 292 (364)
T ss_pred ------------EEEeccccCHHHHHHHHHHHhceEEE
Confidence 28999999999999999998865433
No 312
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=1.8e-07 Score=88.97 Aligned_cols=131 Identities=18% Similarity=0.278 Sum_probs=90.3
Q ss_pred EEEEECCCCCCHHHHHHHHH--cCC--------------CCCCCCc----ccceeEEEEEEEeCCCCCCCCccCCCCCce
Q 019959 23 RVLVVGDSGVGKTSLVNLIV--KGS--------------SFSRPSQ----TIGCTVGVKHITYGSSGSSSNSIKGDSERD 82 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~--~~~--------------~~~~~~~----t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 82 (333)
..+||-.|-+|||||..+|+ ++- +...... .-|+.+....+.++ ...
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~-------------Y~~ 80 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFD-------------YAD 80 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEec-------------cCC
Confidence 78999999999999999987 221 1111111 12455555555544 457
Q ss_pred EEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
+.++|.|||||++|..-....+..+|..|+|+|+...---+.+ +++.-+ +. .++||+-..||.|
T Consensus 81 ~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~-KLfeVc-rl--------------R~iPI~TFiNKlD 144 (528)
T COG4108 81 CLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL-KLFEVC-RL--------------RDIPIFTFINKLD 144 (528)
T ss_pred eEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHH-HHHHHH-hh--------------cCCceEEEeeccc
Confidence 8899999999999998888889999999999999876433322 333333 33 2799999999999
Q ss_pred CCCccCCccCcccHHHHHHHHHHHcCCC
Q 019959 163 VAAKEGTRGSSGNLVDAARQWVEKQGLL 190 (333)
Q Consensus 163 l~~~~~r~v~~~~~~~~~~~~~~~~~~~ 190 (333)
....+. .+...++.+.+++.
T Consensus 145 R~~rdP--------~ELLdEiE~~L~i~ 164 (528)
T COG4108 145 REGRDP--------LELLDEIEEELGIQ 164 (528)
T ss_pred cccCCh--------HHHHHHHHHHhCcc
Confidence 876532 35555555666653
No 313
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.2e-07 Score=94.08 Aligned_cols=123 Identities=23% Similarity=0.364 Sum_probs=86.8
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCC---------------cccceeEEEEEEEeCCCCCCCCccCCCCCce
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPS---------------QTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~---------------~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 82 (333)
+.....|+++|.-+.|||+|+..|.......... ..-|+.+...-+++- ...-.++.
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~--------l~D~~~KS 196 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLV--------LSDSKGKS 196 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEE--------EecCcCce
Confidence 5566789999999999999999998654322111 111333322222210 11134788
Q ss_pred EEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
+.+++.||||+-.|.......++.+|++++|+|+...-.+..- ..++...++ +.|+++|.||+|
T Consensus 197 ~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhaiq~---------------~~~i~vviNKiD 260 (971)
T KOG0468|consen 197 YLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAIQN---------------RLPIVVVINKVD 260 (971)
T ss_pred eeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHHhc---------------cCcEEEEEehhH
Confidence 8999999999999998888889999999999999988776653 333333333 689999999999
Q ss_pred CC
Q 019959 163 VA 164 (333)
Q Consensus 163 l~ 164 (333)
..
T Consensus 261 RL 262 (971)
T KOG0468|consen 261 RL 262 (971)
T ss_pred HH
Confidence 64
No 314
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.69 E-value=2.5e-07 Score=86.55 Aligned_cols=111 Identities=14% Similarity=-0.000 Sum_probs=63.3
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
..+.+.|.||+|..... ......+|.++++-+ +.+-+.+......+. ..|.++|.||
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~---~~~~~el~~~~~~l~-----------------~~~~ivv~NK 181 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTI---PGTGDDLQGIKAGLM-----------------EIADIYVVNK 181 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEec---CCccHHHHHHHHHHh-----------------hhccEEEEEc
Confidence 35778999999953211 124567888888843 334455544444332 4678999999
Q ss_pred cCCCCccCCccCcccHHHHHHHHHHHcCC--CCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 161 ADVAAKEGTRGSSGNLVDAARQWVEKQGL--LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 161 ~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~--~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+|+......... ......-...+.- ..+ ..++++ +||+++.|++++++.+.+.+
T Consensus 182 ~Dl~~~~~~~~~----~~~~~~~l~~l~~~~~~~--~~~v~~---------iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 182 ADGEGATNVTIA----RLMLALALEEIRRREDGW--RPPVLT---------TSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred ccccchhHHHHH----HHHHHHHHhhccccccCC--CCCEEE---------EEccCCCCHHHHHHHHHHHH
Confidence 999864210000 0000000011100 001 124566 99999999999999988763
No 315
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=4.1e-07 Score=86.90 Aligned_cols=156 Identities=15% Similarity=0.162 Sum_probs=103.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC---CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSS---FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
-|+..|.---|||||+..+++..- .+.....++.|........+ +..+.|.|++|++++-..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~---------------d~~~~fIDvpgh~~~i~~ 66 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLE---------------DGVMGFIDVPGHPDFISN 66 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCC---------------CCceEEeeCCCcHHHHHH
Confidence 466778888999999999986532 22333333444444444332 337999999999999877
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcCCCCccCCccCcccHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
.-.-+...|..++|+|.++.-.-+..+ .+.-+... +++ .++|.||+|+.+.. + +.+
T Consensus 67 miag~~~~d~alLvV~~deGl~~qtgE-hL~iLdll---------------gi~~giivltk~D~~d~~--r-----~e~ 123 (447)
T COG3276 67 LLAGLGGIDYALLVVAADEGLMAQTGE-HLLILDLL---------------GIKNGIIVLTKADRVDEA--R-----IEQ 123 (447)
T ss_pred HHhhhcCCceEEEEEeCccCcchhhHH-HHHHHHhc---------------CCCceEEEEeccccccHH--H-----HHH
Confidence 777788999999999997654333222 22222222 344 58999999998762 1 123
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
..+++...+. +++.++|. +|+++|.|++++-+.+.+.+
T Consensus 124 ~i~~Il~~l~----l~~~~i~~---------~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 124 KIKQILADLS----LANAKIFK---------TSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred HHHHHHhhcc----cccccccc---------cccccCCCHHHHHHHHHHhh
Confidence 3334433333 23456666 99999999999999998877
No 316
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.65 E-value=7.6e-08 Score=88.54 Aligned_cols=94 Identities=16% Similarity=0.132 Sum_probs=54.6
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCC--CCCccCCCCCceEEEEEEeCCCchh----hh
Q 019959 24 VLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGS--SSNSIKGDSERDFFVELWDISGHER----YK 97 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~l~i~Dt~G~e~----~~ 97 (333)
|+|||.+|||||||+|++++........+..+.+.....+.+....- -....+........+.++|+||..+ ..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57999999999999999998776444334434444444444431000 0000000001123599999999321 12
Q ss_pred hhHHh---hccCCcEEEEEEECC
Q 019959 98 DCRSI---LYSQINGVIFVHDLS 117 (333)
Q Consensus 98 ~~~~~---~~~~ad~vIlV~D~s 117 (333)
.+... .++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 22222 356899999999974
No 317
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.62 E-value=1.9e-07 Score=81.25 Aligned_cols=96 Identities=18% Similarity=0.197 Sum_probs=63.8
Q ss_pred hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
+..++..+++.+|++|+|+|+++... .|...+.... .+.|+++|+||+|+.... ..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-------------~~~~~ilV~NK~Dl~~~~---~~--- 79 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-------------GNNPVILVGNKIDLLPKD---KN--- 79 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-------------CCCcEEEEEEchhcCCCC---CC---
Confidence 57888889999999999999998642 2333332221 257999999999997532 11
Q ss_pred HHHHHHHHH-----HHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 176 LVDAARQWV-----EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 176 ~~~~~~~~~-----~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+....|. +..++. ..++++ +||++|.|++++++.+.+.+
T Consensus 80 -~~~~~~~~~~~~~~~~~~~----~~~i~~---------vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 80 -LVRIKNWLRAKAAAGLGLK----PKDVIL---------ISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred -HHHHHHHHHHHHHhhcCCC----cccEEE---------EECCCCCCHHHHHHHHHHHh
Confidence 13344444 222221 013555 99999999999988887764
No 318
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=5.5e-07 Score=92.38 Aligned_cols=120 Identities=20% Similarity=0.203 Sum_probs=87.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCC--CC------------CC--CCcccceeEEEEEEEeCCCCCCCCccCCCCCc-
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGS--SF------------SR--PSQTIGCTVGVKHITYGSSGSSSNSIKGDSER- 81 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~--~~------------~~--~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 81 (333)
...-+|.|+|.-.+|||||..+++... .. .. ..+.-|+++....+.+. -+
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~-------------~~~ 74 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLF-------------WKG 74 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEE-------------EcC
Confidence 344589999999999999999998321 10 00 01112444444443332 12
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+.++|+|||||-+|.......++-+|++|+|+|+...-..+.-..|.+.... ++|.+++.||+
T Consensus 75 ~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~----------------~vp~i~fiNKm 138 (697)
T COG0480 75 DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY----------------GVPRILFVNKM 138 (697)
T ss_pred ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc----------------CCCeEEEEECc
Confidence 58899999999999999988899999999999999988766665667655433 68999999999
Q ss_pred CCCCcc
Q 019959 162 DVAAKE 167 (333)
Q Consensus 162 Dl~~~~ 167 (333)
|....+
T Consensus 139 DR~~a~ 144 (697)
T COG0480 139 DRLGAD 144 (697)
T ss_pred cccccC
Confidence 987654
No 319
>PRK12289 GTPase RsgA; Reviewed
Probab=98.57 E-value=3.2e-07 Score=87.37 Aligned_cols=92 Identities=12% Similarity=0.151 Sum_probs=64.4
Q ss_pred hhhHHhhccCCcEEEEEEECCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
..+.+..+.++|++++|+|+.++. .+..+..|+..+... ++|+|||+||+||...
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~---------------~ip~ILVlNK~DLv~~--------- 135 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAEST---------------GLEIVLCLNKADLVSP--------- 135 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHC---------------CCCEEEEEEchhcCCh---------
Confidence 334444578999999999999876 555678888766433 6899999999999753
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
++...|.+.+... .++++. +||+++.|++++++.+..
T Consensus 136 --~~~~~~~~~~~~~----g~~v~~---------iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 136 --TEQQQWQDRLQQW----GYQPLF---------ISVETGIGLEALLEQLRN 172 (352)
T ss_pred --HHHHHHHHHHHhc----CCeEEE---------EEcCCCCCHHHHhhhhcc
Confidence 2234444432111 134555 999999999888877754
No 320
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.54 E-value=3e-07 Score=88.20 Aligned_cols=101 Identities=17% Similarity=0.200 Sum_probs=70.9
Q ss_pred chhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 93 HERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 93 ~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
.++|..+...++..++++++|+|+.+.. ..|..++.+... +.|+++|+||+||... .+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-------------~~piilV~NK~DLl~k---~~~ 108 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-------------GNPVLLVGNKIDLLPK---SVN 108 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-------------CCCEEEEEEchhhCCC---CCC
Confidence 5788889888899999999999997764 346666665532 5799999999999753 222
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
...+.+..+++++++|+.. ..+++ +||++|.|++++++.+.+
T Consensus 109 ~~~~~~~l~~~~k~~g~~~----~~i~~---------vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 109 LSKIKEWMKKRAKELGLKP----VDIIL---------VSAKKGNGIDELLDKIKK 150 (360)
T ss_pred HHHHHHHHHHHHHHcCCCc----CcEEE---------ecCCCCCCHHHHHHHHHH
Confidence 2122233334456666420 12555 999999999999988864
No 321
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=8.5e-07 Score=82.83 Aligned_cols=130 Identities=16% Similarity=0.211 Sum_probs=84.7
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CcccceeEEEEEEEeCCCCCCCCccCC-----CCCce---------
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRP-SQTIGCTVGVKHITYGSSGSSSNSIKG-----DSERD--------- 82 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~~--------- 82 (333)
-..+--|+++|.-..||||+++.|+...|.... .+..+.++....+. |.+...+.| +.+..
T Consensus 55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~----G~~e~~ipGnal~vd~~~pF~gL~~FG~ 130 (532)
T KOG1954|consen 55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMH----GDEEGSIPGNALVVDAKKPFRGLNKFGN 130 (532)
T ss_pred cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEe----cCcccccCCceeeecCCCchhhhhhhHH
Confidence 334448999999999999999999998876421 11111223332222 222222322 11111
Q ss_pred ----------------EEEEEEeCCCc-----------hhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhc
Q 019959 83 ----------------FFVELWDISGH-----------ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATS 135 (333)
Q Consensus 83 ----------------~~l~i~Dt~G~-----------e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~ 135 (333)
-.+.|+||||. -.|.....-|...+|.||++||.-..+--++....+..++.+
T Consensus 131 aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~ 210 (532)
T KOG1954|consen 131 AFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH 210 (532)
T ss_pred HHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC
Confidence 15889999992 224455556788999999999998887666666777777666
Q ss_pred CCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 136 GTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 136 ~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
.-.+-||.||+|..+.
T Consensus 211 ---------------EdkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 211 ---------------EDKIRVVLNKADQVDT 226 (532)
T ss_pred ---------------cceeEEEeccccccCH
Confidence 3357788999998754
No 322
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.51 E-value=5.1e-07 Score=75.92 Aligned_cols=93 Identities=20% Similarity=0.155 Sum_probs=58.3
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
+.+.+...+++|++|+|+|++++...... .+...+... +.|+++|+||+|+.... .
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~~---------------~~p~iiv~NK~Dl~~~~--~------ 58 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLEL---------------GKKLLIVLNKADLVPKE--V------ 58 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHhC---------------CCcEEEEEEhHHhCCHH--H------
Confidence 34566677789999999999886543321 222222222 57999999999996431 0
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+....+....+ .+++. +||+++.|++++++.+.+.+
T Consensus 59 ~~~~~~~~~~~~-------~~~~~---------iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 59 LEKWKSIKESEG-------IPVVY---------VSAKERLGTKILRRTIKELA 95 (156)
T ss_pred HHHHHHHHHhCC-------CcEEE---------EEccccccHHHHHHHHHHHH
Confidence 011112222222 35566 99999999988887776554
No 323
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.44 E-value=6.7e-07 Score=83.14 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=63.1
Q ss_pred hhccCCcEEEEEEECCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+.++|++++|+|++++. ++..+..|+..+... ++|+++|+||+||.+.. . ....
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---------------~ip~iIVlNK~DL~~~~--~------~~~~ 130 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---------------GIEPVIVLTKADLLDDE--E------EELE 130 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---------------CCCEEEEEEHHHCCChH--H------HHHH
Confidence 3578999999999999998 888898998877654 68999999999997541 0 0111
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
..+....+ .+++. +||+++.|+++++..+.
T Consensus 131 ~~~~~~~g-------~~v~~---------vSA~~g~gi~~L~~~L~ 160 (287)
T cd01854 131 LVEALALG-------YPVLA---------VSAKTGEGLDELREYLK 160 (287)
T ss_pred HHHHHhCC-------CeEEE---------EECCCCccHHHHHhhhc
Confidence 22223334 45666 99999988887776654
No 324
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=2.7e-06 Score=77.45 Aligned_cols=145 Identities=22% Similarity=0.272 Sum_probs=96.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC-------C------CC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEE
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG-------S------SF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFF 84 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~-------~------~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (333)
..+++|..||.-.-|||||.-+++.- . +. ......-|+++...++.|. .....
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveye-------------t~~rh 76 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYE-------------TANRH 76 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEe-------------cCCce
Confidence 34679999999999999999988721 1 11 1112234677777788776 23445
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcc---cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR---TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNK 160 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~---S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK 160 (333)
....|+||+.+|......-..+.|+.|+|+++++.. +.+++ + ...+. .+| ++++.||
T Consensus 77 yahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi---L-larqv---------------Gvp~ivvflnK 137 (394)
T COG0050 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI---L-LARQV---------------GVPYIVVFLNK 137 (394)
T ss_pred EEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh---h-hhhhc---------------CCcEEEEEEec
Confidence 778999999999766555567899999999999854 44443 1 11222 465 6777999
Q ss_pred cCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccc
Q 019959 161 ADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTE 200 (333)
Q Consensus 161 ~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E 200 (333)
+|+.++... . +.+..+.+++..++++.. .++|.+-
T Consensus 138 ~Dmvdd~el--l-elVemEvreLLs~y~f~g--d~~Pii~ 172 (394)
T COG0050 138 VDMVDDEEL--L-ELVEMEVRELLSEYGFPG--DDTPIIR 172 (394)
T ss_pred ccccCcHHH--H-HHHHHHHHHHHHHcCCCC--CCcceee
Confidence 999975211 1 111356778888887632 2467766
No 325
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.42 E-value=3.9e-06 Score=79.09 Aligned_cols=134 Identities=14% Similarity=0.175 Sum_probs=84.6
Q ss_pred EEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccH----------HHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 019959 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTK----------TSLQKWAVEIATSGTFSAPLASGGPGGLPV 152 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~----------~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 152 (333)
..+.++|++||..-+.-|..++.++++||||.+++.-+.. ..-...++.|..+.-|. +.
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~-----------~t 263 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFA-----------NT 263 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccc-----------cC
Confidence 5688999999988888899999999999999999875431 12234666666665543 78
Q ss_pred cEEEEeeCcCCCCccCCccC---------cccHHHHHHHHHHH-cCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHH
Q 019959 153 PYVVIGNKADVAAKEGTRGS---------SGNLVDAARQWVEK-QGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAV 222 (333)
Q Consensus 153 PiivVgNK~Dl~~~~~r~v~---------~~~~~~~~~~~~~~-~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~ 222 (333)
++||..||.||..+.-..+. .....+++..+... +.-......=++|. -.+.|..-.+|+.+|
T Consensus 264 siiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~-------h~T~AtDT~nv~~vf 336 (354)
T KOG0082|consen 264 SIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYV-------HFTCATDTQNVQFVF 336 (354)
T ss_pred cEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceE-------EEEeeccHHHHHHHH
Confidence 99999999998654211100 00012344443332 11000000001211 126888888889999
Q ss_pred HHHHHHHHHHHh
Q 019959 223 MKFFRMLIRRRY 234 (333)
Q Consensus 223 ~~l~~~l~~~~~ 234 (333)
..+.+.++.+-+
T Consensus 337 ~av~d~Ii~~nl 348 (354)
T KOG0082|consen 337 DAVTDTIIQNNL 348 (354)
T ss_pred HHHHHHHHHHHH
Confidence 998888887654
No 326
>PRK00098 GTPase RsgA; Reviewed
Probab=98.40 E-value=6.4e-07 Score=83.73 Aligned_cols=85 Identities=15% Similarity=0.162 Sum_probs=60.2
Q ss_pred hccCCcEEEEEEECCCcccHHH-HHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTS-LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~-l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
...++|++|+|+|++++.++.. +..|+..+... ++|+++|+||+||.+.. .. .+...
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~---------------~ip~iIVlNK~DL~~~~--~~-----~~~~~ 134 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN---------------GIKPIIVLNKIDLLDDL--EE-----ARELL 134 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC---------------CCCEEEEEEhHHcCCCH--HH-----HHHHH
Confidence 3589999999999998876555 57888776543 68999999999996331 10 12233
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKF 225 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l 225 (333)
++.+..+ +++++ +||+++.|++++++.+
T Consensus 135 ~~~~~~g-------~~v~~---------vSA~~g~gi~~L~~~l 162 (298)
T PRK00098 135 ALYRAIG-------YDVLE---------LSAKEGEGLDELKPLL 162 (298)
T ss_pred HHHHHCC-------CeEEE---------EeCCCCccHHHHHhhc
Confidence 3334444 35666 9999998888777665
No 327
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.40 E-value=8.6e-07 Score=80.04 Aligned_cols=167 Identities=17% Similarity=0.143 Sum_probs=93.3
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC--
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRP-SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG-- 92 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G-- 92 (333)
.|..+...++++|.+|||||||+|.++........ .++-|-+.....+.++ -.+.+.|.+|
T Consensus 131 ~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~----------------~~~~~vDlPG~~ 194 (320)
T KOG2486|consen 131 CPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG----------------KSWYEVDLPGYG 194 (320)
T ss_pred CCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc----------------ceEEEEecCCcc
Confidence 44567789999999999999999999865433222 1133444444444442 3478899999
Q ss_pred --------chhhhhhHHhhccC---CcEEEEEEECCCcccH-HH-HHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEee
Q 019959 93 --------HERYKDCRSILYSQ---INGVIFVHDLSQRRTK-TS-LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 159 (333)
Q Consensus 93 --------~e~~~~~~~~~~~~---ad~vIlV~D~s~~~S~-~~-l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgN 159 (333)
.+++..+...|+.. --.+++..|++-+-.- +. ...|+.+ + ++|+.+|.|
T Consensus 195 ~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge---~---------------~VP~t~vfT 256 (320)
T KOG2486|consen 195 RAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE---N---------------NVPMTSVFT 256 (320)
T ss_pred cccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh---c---------------CCCeEEeee
Confidence 23334444444332 2345556666654221 11 2345443 2 799999999
Q ss_pred CcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 160 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 160 K~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
|||......+..... ...+......+.-..+....|++- +|+.++.|+++++-.+++
T Consensus 257 K~DK~k~~~~~~kKp--~~~i~~~f~~l~~~~f~~~~Pw~~---------~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 257 KCDKQKKVKRTGKKP--GLNIKINFQGLIRGVFLVDLPWIY---------VSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred hhhhhhhccccccCc--cccceeehhhccccceeccCCcee---------eecccccCceeeeeehhh
Confidence 999875422111110 011111111111111111345444 999999999887766554
No 328
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.39 E-value=3e-06 Score=73.07 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=59.2
Q ss_pred EEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
..+.|...+|. . ...-.+.-..+.-|+|+|++..+-. ...++|.... -=++|.||.|
T Consensus 97 ~Dll~iEs~GN--L-~~~~sp~L~d~~~v~VidvteGe~~-------------------P~K~gP~i~~-aDllVInK~D 153 (202)
T COG0378 97 LDLLFIESVGN--L-VCPFSPDLGDHLRVVVIDVTEGEDI-------------------PRKGGPGIFK-ADLLVINKTD 153 (202)
T ss_pred CCEEEEecCcc--e-ecccCcchhhceEEEEEECCCCCCC-------------------cccCCCceeE-eeEEEEehHH
Confidence 45666676661 1 1111222234477888888876421 1112333333 3468899999
Q ss_pred CCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 163 VAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 163 l~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
|.+.-++. .+...+-+++.+- +.|+++ +|+|+|.|+++.++.+...
T Consensus 154 La~~v~~d------levm~~da~~~np-----~~~ii~---------~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 154 LAPYVGAD------LEVMARDAKEVNP-----EAPIIF---------TNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred hHHHhCcc------HHHHHHHHHHhCC-----CCCEEE---------EeCCCCcCHHHHHHHHHhh
Confidence 98764332 1334444444332 467887 9999999988887766543
No 329
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.37 E-value=9.7e-07 Score=73.13 Aligned_cols=54 Identities=33% Similarity=0.364 Sum_probs=38.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
+++++|.+|||||||+|++++..... .....|.+.....+.++ + .+.||||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~-------------~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLT-------------P---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeC-------------C---CEEEEECCCc
Confidence 89999999999999999999876532 22223334444444443 1 3799999994
No 330
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=1e-06 Score=82.97 Aligned_cols=98 Identities=18% Similarity=0.165 Sum_probs=57.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCC-CCCCc-cC-CCCCceEEEEEEeCCCc----
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSG-SSSNS-IK-GDSERDFFVELWDISGH---- 93 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~~-i~-~~~~~~~~l~i~Dt~G~---- 93 (333)
.+++.|||-||||||||+|+++.........|..+++...-.+.+.... ..-.. .+ ...-....++++|++|-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 3689999999999999999999776433333333333333333322100 00000 00 11234567999999992
Q ss_pred hhhhhhHHh---hccCCcEEEEEEECCC
Q 019959 94 ERYKDCRSI---LYSQINGVIFVHDLSQ 118 (333)
Q Consensus 94 e~~~~~~~~---~~~~ad~vIlV~D~s~ 118 (333)
.....+-.. -++.+|++++|+|+..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 222223222 3678999999999873
No 331
>PRK12288 GTPase RsgA; Reviewed
Probab=98.34 E-value=1.6e-06 Score=82.55 Aligned_cols=85 Identities=13% Similarity=0.171 Sum_probs=62.6
Q ss_pred ccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHH
Q 019959 104 YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQW 183 (333)
Q Consensus 104 ~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~ 183 (333)
..++|.+++|++++...++..+..|+..+... ++|++||+||+||.....+ +...++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~---------------~i~~VIVlNK~DL~~~~~~--------~~~~~~ 174 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETL---------------GIEPLIVLNKIDLLDDEGR--------AFVNEQ 174 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhc---------------CCCEEEEEECccCCCcHHH--------HHHHHH
Confidence 35699999999999888999999998866433 6899999999999754210 112222
Q ss_pred H---HHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 184 V---EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 184 ~---~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
. +..| +++++ +||+++.|++++++.+..
T Consensus 175 ~~~y~~~g-------~~v~~---------vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 175 LDIYRNIG-------YRVLM---------VSSHTGEGLEELEAALTG 205 (347)
T ss_pred HHHHHhCC-------CeEEE---------EeCCCCcCHHHHHHHHhh
Confidence 2 2334 45677 999999999888877754
No 332
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.29 E-value=2.6e-06 Score=72.90 Aligned_cols=59 Identities=27% Similarity=0.351 Sum_probs=41.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
....++|+++|.+|||||||+|++++..+. ......+.++....+.++ ..+.+|||||.
T Consensus 112 ~~~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~----------------~~~~~iDtpG~ 170 (171)
T cd01856 112 LPRGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS----------------PGIYLLDTPGI 170 (171)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec----------------CCEEEEECCCC
Confidence 445579999999999999999999987653 222233444544444442 23889999994
No 333
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.26 E-value=3.6e-06 Score=77.05 Aligned_cols=110 Identities=17% Similarity=0.076 Sum_probs=67.1
Q ss_pred CCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEe
Q 019959 79 SERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 158 (333)
Q Consensus 79 ~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVg 158 (333)
+.-.+.+.|..|.|.-.-.. ....-+|.+++|.=..-.+..+-++.=+.++ -=|+|.
T Consensus 140 dAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi--------------------aDi~vI 196 (323)
T COG1703 140 DAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEI--------------------ADIIVI 196 (323)
T ss_pred HhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhh--------------------hheeeE
Confidence 34446688889988322211 2244689998887666666655555444443 235778
Q ss_pred eCcCCCCccCCccCcccHHHHHHHHHHHcCCCC--CC---cCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 159 NKADVAAKEGTRGSSGNLVDAARQWVEKQGLLP--SS---EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 159 NK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~--~~---~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
||.|....+ ...+.+...+.+.. +. ...|.+. |||.+|.|++++++.+.+...
T Consensus 197 NKaD~~~A~----------~a~r~l~~al~~~~~~~~~~~W~ppv~~---------t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 197 NKADRKGAE----------KAARELRSALDLLREVWRENGWRPPVVT---------TSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred eccChhhHH----------HHHHHHHHHHHhhcccccccCCCCceeE---------eeeccCCCHHHHHHHHHHHHH
Confidence 999965431 33444444444332 11 1356777 999999999998888876543
No 334
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.23 E-value=1.1e-06 Score=79.29 Aligned_cols=102 Identities=18% Similarity=0.121 Sum_probs=59.3
Q ss_pred EEEEEEeCCC--chhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 83 FFVELWDISG--HERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 83 ~~l~i~Dt~G--~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
+.+.|..|.| |.+. ....-+|.+++|.-..-.+..+-++.=+.++ .=|+|.||
T Consensus 122 ~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------------------aDi~vVNK 176 (266)
T PF03308_consen 122 FDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------------------ADIFVVNK 176 (266)
T ss_dssp -SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------------------SEEEEE-
T ss_pred CCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------------------ccEEEEeC
Confidence 4466777776 3332 2345699999999887777666555444444 33577899
Q ss_pred cCCCCccCCccCcccHHHHHHHHHHHcCCCCC---CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 161 ADVAAKEGTRGSSGNLVDAARQWVEKQGLLPS---SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 161 ~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~---~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+|+...+ ...+++...+.+... ....|.+. |||.++.|++++++.+.+.
T Consensus 177 aD~~gA~----------~~~~~l~~~l~l~~~~~~~W~ppV~~---------tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 177 ADRPGAD----------RTVRDLRSMLHLLREREDGWRPPVLK---------TSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp -SHHHHH----------HHHHHHHHHHHHCSTSCTSB--EEEE---------EBTTTTBSHHHHHHHHHHH
T ss_pred CChHHHH----------HHHHHHHHHHhhccccccCCCCCEEE---------EEeCCCCCHHHHHHHHHHH
Confidence 9965431 223333333222110 11246777 9999999999998888764
No 335
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.22 E-value=3.9e-06 Score=70.70 Aligned_cols=56 Identities=27% Similarity=0.265 Sum_probs=37.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
..++|+++|.+|||||||+|+|.+..... ...+.|.+.....+..+ . .+.|.||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~-~~~~~g~T~~~~~~~~~--------------~--~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCK-VAPIPGETKVWQYITLM--------------K--RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCcee-eCCCCCeeEeEEEEEcC--------------C--CEEEEECcC
Confidence 45789999999999999999999764422 12222333333333322 1 278999999
No 336
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.20 E-value=3.9e-06 Score=72.10 Aligned_cols=57 Identities=30% Similarity=0.384 Sum_probs=39.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
...++|+|+|.+|||||||+|++++..... .....|.+.....+.++ -.+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~-~~~~pg~T~~~~~~~~~----------------~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACN-VGATPGVTKSMQEVHLD----------------KKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccce-ecCCCCeEcceEEEEeC----------------CCEEEEECcC
Confidence 445899999999999999999999765421 12223444444444432 1388999998
No 337
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.20 E-value=5.1e-06 Score=69.79 Aligned_cols=55 Identities=31% Similarity=0.372 Sum_probs=39.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
..+|+++|.+|||||||+|+|.+... ....++.|.+.....+..+ ..+.+|||||
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~----------------~~~~~~DtpG 155 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKIT----------------SKIYLLDTPG 155 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcC----------------CCEEEEECcC
Confidence 46899999999999999999996543 3445555655443333332 2489999999
No 338
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.16 E-value=1e-05 Score=74.80 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.+-|.|+|.+|+|||||++++++.
T Consensus 104 ~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 104 QLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999988754
No 339
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.16 E-value=1.5e-05 Score=70.76 Aligned_cols=136 Identities=21% Similarity=0.292 Sum_probs=75.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC---------CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFS---------RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDIS 91 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~---------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~ 91 (333)
.|+|+|||.+|.|||||+|.+....... ....|+.+....-.+. .++...++++.|||
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvie-------------E~gVklkltviDTP 112 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIE-------------EKGVKLKLTVIDTP 112 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeee-------------ecceEEEEEEecCC
Confidence 5799999999999999999998553322 2222333222222222 23677889999999
Q ss_pred Cc------------------hhhhh--------hHHhhcc--CCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCC
Q 019959 92 GH------------------ERYKD--------CRSILYS--QINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPL 142 (333)
Q Consensus 92 G~------------------e~~~~--------~~~~~~~--~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~ 142 (333)
|- +.|.. .+...+. ..+++++.+..+-. ++.-+ -.+++.+.+.
T Consensus 113 GfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~v------- 184 (336)
T KOG1547|consen 113 GFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTEV------- 184 (336)
T ss_pred CcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhhh-------
Confidence 91 11111 1112222 46788887777643 33322 1233344333
Q ss_pred CCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCC
Q 019959 143 ASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLL 190 (333)
Q Consensus 143 ~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~ 190 (333)
+-+|-|.-|+|-..-+.|..- .+.+++-..++++.
T Consensus 185 ---------vNvvPVIakaDtlTleEr~~F----kqrI~~el~~~~i~ 219 (336)
T KOG1547|consen 185 ---------VNVVPVIAKADTLTLEERSAF----KQRIRKELEKHGID 219 (336)
T ss_pred ---------heeeeeEeecccccHHHHHHH----HHHHHHHHHhcCcc
Confidence 457777899997654323211 23444444556654
No 340
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.15 E-value=6.5e-06 Score=76.54 Aligned_cols=59 Identities=25% Similarity=0.370 Sum_probs=41.1
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
....++|+|+|.+|||||||+|+|++...... ....|.+.....+.++ -.+.|+||||.
T Consensus 118 ~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~----------------~~~~l~DtPGi 176 (287)
T PRK09563 118 RPRAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLG----------------KGLELLDTPGI 176 (287)
T ss_pred CcCceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeC----------------CcEEEEECCCc
Confidence 34568999999999999999999998754221 2233444444445443 13789999994
No 341
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.14 E-value=1.1e-05 Score=67.99 Aligned_cols=87 Identities=13% Similarity=0.117 Sum_probs=55.7
Q ss_pred hccCCcEEEEEEECCCccc--HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRT--KTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S--~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
.+..+|++++|+|++++.. ...+..++.. .. .+.|+++|.||+|+.++ ++.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~---~~-------------~~~p~ilVlNKiDl~~~-----------~~~ 57 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKK---EK-------------PHKHLIFVLNKCDLVPT-----------WVT 57 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHHh---cc-------------CCCCEEEEEEchhcCCH-----------HHH
Confidence 4678999999999998743 2333333332 21 25899999999999754 334
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
..|...+.-. .++. .+.+||+++.|++++++.+.+.
T Consensus 58 ~~~~~~~~~~-----~~~~-------~~~iSa~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 58 ARWVKILSKE-----YPTI-------AFHASINNPFGKGSLIQLLRQF 93 (157)
T ss_pred HHHHHHHhcC-----CcEE-------EEEeeccccccHHHHHHHHHHH
Confidence 4444444311 1111 1238999999998888777553
No 342
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.14 E-value=1.7e-05 Score=74.64 Aligned_cols=185 Identities=18% Similarity=0.277 Sum_probs=104.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------------cccceeEEEEEEEeCCCCCC--CCccCC----
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPS--------------QTIGCTVGVKHITYGSSGSS--SNSIKG---- 77 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~--------------~t~~~~~~~~~~~~~~~~~~--~~~i~~---- 77 (333)
.+.++.|.+.|.-..|||||+-.|+.+....... .....++....+-+++...- .+..+.
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 5678899999999999999999988654322111 11112222333333221100 000000
Q ss_pred --CCCceEEEEEEeCCCchhhhhhH--HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q 019959 78 --DSERDFFVELWDISGHERYKDCR--SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP 153 (333)
Q Consensus 78 --~~~~~~~l~i~Dt~G~e~~~~~~--~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P 153 (333)
....+--+.+.||.|+|.|-.+. -.+-++.|-.++|+.+++.-+... +..+--+... .+|
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~a~---------------~lP 257 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIALAM---------------ELP 257 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhhhh---------------cCC
Confidence 11223458899999999986543 334568999999999998765322 1122222222 689
Q ss_pred EEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCC------------------cCCCccccCCCCCceeeeeccC
Q 019959 154 YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSS------------------EELPLTESFPGGGGLIAAAKEA 215 (333)
Q Consensus 154 iivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~------------------~~~p~~E~~~~~~~~~~SAk~g 215 (333)
+|||.+|+|+.+++..+-. .+++..+.+..+-.++. .-.|.|+ +|+.+|
T Consensus 258 viVvvTK~D~~~ddr~~~v----~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~---------tSsVTg 324 (527)
T COG5258 258 VIVVVTKIDMVPDDRFQGV----VEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFY---------TSSVTG 324 (527)
T ss_pred EEEEEEecccCcHHHHHHH----HHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEE---------EecccC
Confidence 9999999999876422211 23343333332211100 0145666 999999
Q ss_pred cCHHHHHHHHHHHHHHH
Q 019959 216 RYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 216 ~~v~~~~~~l~~~l~~~ 232 (333)
.|++ +++++|..+-++
T Consensus 325 ~Gld-lL~e~f~~Lp~r 340 (527)
T COG5258 325 EGLD-LLDEFFLLLPKR 340 (527)
T ss_pred ccHH-HHHHHHHhCCcc
Confidence 8885 444555544333
No 343
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.14 E-value=6.8e-06 Score=76.20 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=66.6
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCC--CCCccCCCCCceEEEEEEeCCCc
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGS--SSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
+.....+|+.|||-+|||||||+|.+++........|..+++...-.+.+..+.= ..............++++|++|.
T Consensus 15 gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL 94 (391)
T KOG1491|consen 15 GRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL 94 (391)
T ss_pred cCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence 3445778999999999999999999998877666666655555555555432110 00000112245567999999993
Q ss_pred hh----hhhhHHh---hccCCcEEEEEEECCC
Q 019959 94 ER----YKDCRSI---LYSQINGVIFVHDLSQ 118 (333)
Q Consensus 94 e~----~~~~~~~---~~~~ad~vIlV~D~s~ 118 (333)
-+ ...+-.. -++.+|+++.|+++..
T Consensus 95 vkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 95 VKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 22 2222222 3678999999988754
No 344
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=4e-05 Score=75.25 Aligned_cols=160 Identities=16% Similarity=0.212 Sum_probs=97.1
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
..+..+-|+|||++|+|||||+..|...-. ..|+..-....++ ..++...+.+..++ .+.
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~t----k~ti~~i~GPiTv--------------vsgK~RRiTflEcp--~Dl 124 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFT----KQTIDEIRGPITV--------------VSGKTRRITFLECP--SDL 124 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHH----HhhhhccCCceEE--------------eecceeEEEEEeCh--HHH
Confidence 345557899999999999999998874311 1111111111122 22677789999998 344
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcCCCCccCCccCccc
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~Dl~~~~~r~v~~~~ 175 (333)
..+.. ..+-||.|++.+|..-.--.+.+ .++.-+..++ .| ++-|++..||....
T Consensus 125 ~~miD-vaKIaDLVlLlIdgnfGfEMETm-EFLnil~~HG---------------mPrvlgV~ThlDlfk~~-------- 179 (1077)
T COG5192 125 HQMID-VAKIADLVLLLIDGNFGFEMETM-EFLNILISHG---------------MPRVLGVVTHLDLFKNP-------- 179 (1077)
T ss_pred HHHHh-HHHhhheeEEEeccccCceehHH-HHHHHHhhcC---------------CCceEEEEeecccccCh--------
Confidence 44443 35679999999998765333333 4556666664 34 67789999998652
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeec-cCcCHHHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAK-EARYDKEAVMKFFRML 229 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk-~g~~v~~~~~~l~~~l 229 (333)
...+...+.+.-. -+.|.++|+.+|..|.. +|..-+.-+-.|.+.+
T Consensus 180 --stLr~~KKrlkhR------fWtEiyqGaKlFylsgV~nGRYpDreilnLsRfi 226 (1077)
T COG5192 180 --STLRSIKKRLKHR------FWTEIYQGAKLFYLSGVENGRYPDREILNLSRFI 226 (1077)
T ss_pred --HHHHHHHHHHhhh------HHHHHcCCceEEEecccccCCCCCHHHHHHHHHH
Confidence 2233333322211 14556678888878866 5665565555555544
No 345
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.11 E-value=6.3e-05 Score=70.74 Aligned_cols=118 Identities=17% Similarity=0.310 Sum_probs=70.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCC----------CCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEe
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSR----------PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWD 89 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~D 89 (333)
..+.|++||..|.|||||+|.|++...... ..+++. +......+. .++..+.+++.|
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~--i~~~~~~l~-----------e~~~~~~l~vID 88 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLE--IKITKAELE-----------EDGFHLNLTVID 88 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceE--EEeeeeeee-----------cCCeEEEEEEec
Confidence 347999999999999999999997643322 122222 323333332 347888999999
Q ss_pred CCCchhh--------------hhhHHhh------------c--cCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCC
Q 019959 90 ISGHERY--------------KDCRSIL------------Y--SQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSA 140 (333)
Q Consensus 90 t~G~e~~--------------~~~~~~~------------~--~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~ 140 (333)
|||-.++ ......| + ...|++++..-.+.. .+..+. .....+..
T Consensus 89 tpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~------ 161 (373)
T COG5019 89 TPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLSK------ 161 (373)
T ss_pred cCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHhc------
Confidence 9992111 0011111 1 257888888876643 222221 23333333
Q ss_pred CCCCCCCCCCCCcEEEEeeCcCCCCcc
Q 019959 141 PLASGGPGGLPVPYVVIGNKADVAAKE 167 (333)
Q Consensus 141 ~~~~~~~~~~~~PiivVgNK~Dl~~~~ 167 (333)
.+-+|=|..|+|....+
T Consensus 162 ----------~vNlIPVI~KaD~lT~~ 178 (373)
T COG5019 162 ----------RVNLIPVIAKADTLTDD 178 (373)
T ss_pred ----------ccCeeeeeeccccCCHH
Confidence 35677788999987653
No 346
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=4.3e-05 Score=72.22 Aligned_cols=116 Identities=15% Similarity=0.286 Sum_probs=70.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC---------CCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSR---------PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDIS 91 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~ 91 (333)
.|.++++|++|.|||||+|.|+...+... ...| ..+......+. .++..+.|++.|||
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t--~~i~~~~~~ie-----------e~g~~l~LtvidtP 87 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKET--VEIESTKVEIE-----------ENGVKLNLTVIDTP 87 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCcccc--ceeeeeeeeec-----------CCCeEEeeEEeccC
Confidence 48999999999999999999987644332 1112 23333333333 34788899999999
Q ss_pred Cch------------------hhhhh-------HHhhcc--CCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCC
Q 019959 92 GHE------------------RYKDC-------RSILYS--QINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLA 143 (333)
Q Consensus 92 G~e------------------~~~~~-------~~~~~~--~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~ 143 (333)
|-. .|... .+..+. ..|++++....+... +..+. .....+.
T Consensus 88 GfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l~---------- 156 (366)
T KOG2655|consen 88 GFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKLS---------- 156 (366)
T ss_pred CCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHHh----------
Confidence 921 11111 001122 678888888866431 22221 1222222
Q ss_pred CCCCCCCCCcEEEEeeCcCCCCc
Q 019959 144 SGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 144 ~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
..+.+|-|.-|+|....
T Consensus 157 ------~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 157 ------KKVNLIPVIAKADTLTK 173 (366)
T ss_pred ------ccccccceeeccccCCH
Confidence 25678888899998765
No 347
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.10 E-value=1.3e-05 Score=76.46 Aligned_cols=97 Identities=13% Similarity=0.009 Sum_probs=56.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCC--CCCccCCCCCceEEEEEEeCCCchh---
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGS--SSNSIKGDSERDFFVELWDISGHER--- 95 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~l~i~Dt~G~e~--- 95 (333)
+|+.|||.+|||||||++.+++... .....+..+.+.....+.+....- -...+.........+.+.|++|.-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6999999999999999999998765 332223222333333444431000 0000000111234689999999322
Q ss_pred ----hhhhHHhhccCCcEEEEEEECCC
Q 019959 96 ----YKDCRSILYSQINGVIFVHDLSQ 118 (333)
Q Consensus 96 ----~~~~~~~~~~~ad~vIlV~D~s~ 118 (333)
.....-..++.+|++++|+|..+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 11122234778999999999853
No 348
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.10 E-value=1e-05 Score=74.77 Aligned_cols=58 Identities=28% Similarity=0.396 Sum_probs=40.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
...++|+|+|.+|||||||+|+|++...... ....|.+.....+.++ . .+.|+||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~--------------~--~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLS--------------D--GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeC--------------C--CEEEEECCCc
Confidence 4568999999999999999999997653222 2223444444455442 1 3789999995
No 349
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.10 E-value=7.3e-06 Score=77.38 Aligned_cols=61 Identities=31% Similarity=0.448 Sum_probs=45.1
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
.+-....++|.|||.+|||||||+|+|++... ....+..|.+-....+.+.. .+.|+||||
T Consensus 126 ~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~----------------~i~LlDtPG 186 (322)
T COG1161 126 KGLLKRKIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDD----------------GIYLLDTPG 186 (322)
T ss_pred cCCCccceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCC----------------CeEEecCCC
Confidence 33345567899999999999999999998765 23333336666667776642 289999999
No 350
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=9.5e-06 Score=76.03 Aligned_cols=130 Identities=22% Similarity=0.316 Sum_probs=81.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCC-----------------------CCcccceeEEEEEEEeCCCCCCCCc
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSR-----------------------PSQTIGCTVGVKHITYGSSGSSSNS 74 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~~~~ 74 (333)
..-.++|+|+|...+|||||+--|+.+..... ...++|.+-.-+.+.|.... +...
T Consensus 164 qfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~-taEE 242 (591)
T KOG1143|consen 164 QFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNM-TAEE 242 (591)
T ss_pred cceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcc-cHHH
Confidence 45568999999999999999988886543221 11233444444444443110 0001
Q ss_pred cCCCCCceEEEEEEeCCCchhhhhhHHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 019959 75 IKGDSERDFFVELWDISGHERYKDCRSILYS--QINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPV 152 (333)
Q Consensus 75 i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~--~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 152 (333)
| .+...-.+.++|.+|+.+|......-+. ..|..++|+++...-.... +..+..+... ++
T Consensus 243 i--~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL---------------~i 304 (591)
T KOG1143|consen 243 I--VEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL---------------NI 304 (591)
T ss_pred H--HhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh---------------CC
Confidence 1 1122345889999999999876554443 4688889998877543322 2223333333 79
Q ss_pred cEEEEeeCcCCCCc
Q 019959 153 PYVVIGNKADVAAK 166 (333)
Q Consensus 153 PiivVgNK~Dl~~~ 166 (333)
|++++.+|+||.+.
T Consensus 305 PfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 305 PFFVLVTKMDLVDR 318 (591)
T ss_pred CeEEEEEeeccccc
Confidence 99999999999875
No 351
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.03 E-value=1.8e-05 Score=86.71 Aligned_cols=112 Identities=21% Similarity=0.220 Sum_probs=68.4
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCC------CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC----c
Q 019959 24 VLVVGDSGVGKTSLVNLIVKGSSFSRP------SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG----H 93 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G----~ 93 (333)
.+|||++|+|||||+.+- +-.|.-.. ...++-+.. ..+.+. + ...++||+| +
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~-------------~---~avliDtaG~y~~~ 175 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFT-------------D---EAVLIDTAGRYTTQ 175 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEec-------------C---CEEEEcCCCccccC
Confidence 789999999999999987 33442211 111111111 111111 1 255899999 2
Q ss_pred h----hhhhhHHhhc---------cCCcEEEEEEECCCccc--H-------HHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 019959 94 E----RYKDCRSILY---------SQINGVIFVHDLSQRRT--K-------TSLQKWAVEIATSGTFSAPLASGGPGGLP 151 (333)
Q Consensus 94 e----~~~~~~~~~~---------~~ad~vIlV~D~s~~~S--~-------~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 151 (333)
+ .....+..++ +-.||||+|+|+.+.-. - ..+...+.++.+... ..
T Consensus 176 ~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg------------~~ 243 (1169)
T TIGR03348 176 DSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG------------AR 243 (1169)
T ss_pred CCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC------------CC
Confidence 1 2223333332 35899999999977532 1 234556677766653 58
Q ss_pred CcEEEEeeCcCCCC
Q 019959 152 VPYVVIGNKADVAA 165 (333)
Q Consensus 152 ~PiivVgNK~Dl~~ 165 (333)
+||.||.||+|+..
T Consensus 244 ~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 244 FPVYLVLTKADLLA 257 (1169)
T ss_pred CCEEEEEecchhhc
Confidence 99999999999874
No 352
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.03 E-value=8.7e-06 Score=70.79 Aligned_cols=55 Identities=33% Similarity=0.475 Sum_probs=36.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-------CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFS-------RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
.+++++|.+|||||||+|+|++..... ......|.+.....+.++ . .+.|+||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-------------~---~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG-------------N---GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC-------------C---CCEEEeCcC
Confidence 589999999999999999999754211 111222444444444442 1 378999999
No 353
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.01 E-value=2.3e-05 Score=65.91 Aligned_cols=83 Identities=14% Similarity=0.079 Sum_probs=52.1
Q ss_pred cEEEEEEECCCcccHHHHHHHHH-HHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHH
Q 019959 108 NGVIFVHDLSQRRTKTSLQKWAV-EIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEK 186 (333)
Q Consensus 108 d~vIlV~D~s~~~S~~~l~~~~~-~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~ 186 (333)
|++|+|+|+.++.+... .|+. ..... .+.|+|+|.||+|+... +....|...
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~--------------~~~p~IiVlNK~Dl~~~-----------~~~~~~~~~ 53 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE--------------KGKKLILVLNKADLVPK-----------EVLRKWLAY 53 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc--------------CCCCEEEEEechhcCCH-----------HHHHHHHHH
Confidence 78999999998866543 2333 12121 26899999999999654 223333222
Q ss_pred cCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 187 QGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 187 ~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+.-.. ..+++. +||++|.|++++.+.+.+..
T Consensus 54 ~~~~~---~~~ii~---------vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 54 LRHSY---PTIPFK---------ISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred HHhhC---CceEEE---------EeccCCcChhhHHHHHHHHh
Confidence 11000 023444 99999999998888776653
No 354
>PRK13796 GTPase YqeH; Provisional
Probab=97.97 E-value=4.1e-05 Score=73.58 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=63.3
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
+.|..+....-...+.|++|+|+.+.. ..|...+.+... +.|+++|+||+||... .+..
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-------------~kpviLViNK~DLl~~---~~~~ 115 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-------------NNPVLLVGNKADLLPK---SVKK 115 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHhC-------------CCCEEEEEEchhhCCC---ccCH
Confidence 456665555333344999999998754 346666655431 5789999999999753 2222
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
..+.+..+.+++.+|+.. ..++. +||++|.|++++++.+.+.
T Consensus 116 ~~i~~~l~~~~k~~g~~~----~~v~~---------vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 116 NKVKNWLRQEAKELGLRP----VDVVL---------ISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred HHHHHHHHHHHHhcCCCc----CcEEE---------EECCCCCCHHHHHHHHHHh
Confidence 111223333455556421 13455 9999999999999888653
No 355
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.96 E-value=2.4e-05 Score=66.93 Aligned_cols=93 Identities=16% Similarity=0.089 Sum_probs=57.6
Q ss_pred hhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcc
Q 019959 95 RYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSG 174 (333)
Q Consensus 95 ~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~ 174 (333)
+........+..+|++++|+|++++...... .+...+ .+.|+++|.||+|+...
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----------------~~k~~ilVlNK~Dl~~~-------- 61 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----------------GNKPRIIVLNKADLADP-------- 61 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----------------cCCCEEEEEehhhcCCh--------
Confidence 3444455668899999999999876543221 122211 14689999999999643
Q ss_pred cHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 175 NLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+....|.+.+... ...++. +||+++.|++++.+.+...+
T Consensus 62 ---~~~~~~~~~~~~~----~~~vi~---------iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 62 ---KKTKKWLKYFESK----GEKVLF---------VNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred ---HHHHHHHHHHHhc----CCeEEE---------EECCCcccHHHHHHHHHHHH
Confidence 1122232221110 012344 99999999998888877664
No 356
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.95 E-value=2.1e-05 Score=65.04 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=36.4
Q ss_pred hhccCCcEEEEEEECCCcccHH--HHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 102 ILYSQINGVIFVHDLSQRRTKT--SLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~--~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
..+..+|++++|+|+.++.+.. .+..|+.... .+.|+++|+||+|+..+
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~----------------~~k~~iivlNK~DL~~~ 57 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEVD----------------PRKKNILLLNKADLLTE 57 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhcc----------------CCCcEEEEEechhcCCH
Confidence 3478999999999999887644 4455554331 25799999999999654
No 357
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=7.4e-05 Score=66.66 Aligned_cols=109 Identities=24% Similarity=0.329 Sum_probs=68.2
Q ss_pred EEEEECCCCC--CHHHHHHHHHcCCCCCCCCcc-----cceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 23 RVLVVGDSGV--GKTSLVNLIVKGSSFSRPSQT-----IGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 23 kI~ivG~~~v--GKSSLl~~l~~~~~~~~~~~t-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
-++|+|.+|| ||-+|+++|....|....... .|+++..|.... .+.+.|.-... +.
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysa----------------di~lcishicd-e~ 68 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSA----------------DINLCISHICD-EK 68 (418)
T ss_pred eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeec----------------ceeEEeecccc-hh
Confidence 5889999999 999999999977775443332 234444444332 22233322211 12
Q ss_pred hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcCCC
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVA 164 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~Dl~ 164 (333)
+-... .......++++|||++....+..++.|+....-. ..- ++.+|||.|..
T Consensus 69 ~lpn~-~~a~pl~a~vmvfdlse~s~l~alqdwl~htdin---------------sfdillcignkvdrv 122 (418)
T KOG4273|consen 69 FLPNA-EIAEPLQAFVMVFDLSEKSGLDALQDWLPHTDIN---------------SFDILLCIGNKVDRV 122 (418)
T ss_pred ccCCc-ccccceeeEEEEEeccchhhhHHHHhhccccccc---------------cchhheecccccccc
Confidence 21111 1233567999999999999999999998754322 122 45679999964
No 358
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.91 E-value=3.1e-05 Score=65.13 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=23.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
...+|+++|.+|||||||+|.+++..
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~ 124 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKL 124 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccc
Confidence 45789999999999999999999764
No 359
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.85 E-value=7.8e-05 Score=66.79 Aligned_cols=87 Identities=18% Similarity=0.109 Sum_probs=53.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC--CCCCCC---CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG--SSFSRP---SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~--~~~~~~---~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
...-|+|+|++++|||+|+|+|++. .|.... ..|.|+-.....+.. +....+.++||+|..
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~--------------~~~~~v~~lDteG~~ 71 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL--------------GKEHAVLLLDTEGTD 71 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC--------------CCcceEEEEecCCcC
Confidence 3457899999999999999999988 554322 233333222211110 235679999999943
Q ss_pred hh------hhhHHhhccC--CcEEEEEEECCCcc
Q 019959 95 RY------KDCRSILYSQ--INGVIFVHDLSQRR 120 (333)
Q Consensus 95 ~~------~~~~~~~~~~--ad~vIlV~D~s~~~ 120 (333)
.. .......+.. ++++|+..+.....
T Consensus 72 ~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 72 GRERGEFEDDARLFALATLLSSVLIYNSWETILG 105 (224)
T ss_pred ccccCchhhhhHHHHHHHHHhCEEEEeccCcccH
Confidence 22 1112222333 88888888776544
No 360
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=0.0001 Score=68.58 Aligned_cols=161 Identities=23% Similarity=0.233 Sum_probs=102.2
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcC-------CCCC-------CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceE
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKG-------SSFS-------RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDF 83 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~-------~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 83 (333)
...+++|.-||.-.-|||||.-+++.- .+.. .....-|+++..-++.|. ....
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYe-------------Ta~R 117 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYE-------------TAKR 117 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeee-------------cccc
Confidence 445679999999999999999988721 1111 111223667777777775 2233
Q ss_pred EEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcc---cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEee
Q 019959 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR---TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGN 159 (333)
Q Consensus 84 ~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~---S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgN 159 (333)
...-.|+||+.+|......-..+.|+.|+|+.++|.. +-+++ -..++. .++ ++|..|
T Consensus 118 hYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHl----LLArQV---------------GV~~ivvfiN 178 (449)
T KOG0460|consen 118 HYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHL----LLARQV---------------GVKHIVVFIN 178 (449)
T ss_pred ccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHH----HHHHHc---------------CCceEEEEEe
Confidence 3456799999999776555567899999999999964 33333 222222 234 677789
Q ss_pred CcCCCCc-cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHH
Q 019959 160 KADVAAK-EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAV 222 (333)
Q Consensus 160 K~Dl~~~-~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~ 222 (333)
|.|+.++ +..+.. +-+++++..++|+.. +++|++- | =-.+|..|.+-+-..
T Consensus 179 KvD~V~d~e~leLV----EmE~RElLse~gf~G--d~~PvI~---G---SAL~ALeg~~peig~ 230 (449)
T KOG0460|consen 179 KVDLVDDPEMLELV----EMEIRELLSEFGFDG--DNTPVIR---G---SALCALEGRQPEIGL 230 (449)
T ss_pred cccccCCHHHHHHH----HHHHHHHHHHcCCCC--CCCCeee---c---chhhhhcCCCccccH
Confidence 9999954 222222 256788888888642 3577766 1 114566665444333
No 361
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.79 E-value=0.00012 Score=66.26 Aligned_cols=64 Identities=25% Similarity=0.344 Sum_probs=44.1
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
-.++|+.||.+|.|||||+..|.+-.|...+.+..-..+..+.-+|+-. ..+...++.|.||.|
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~Tyelq---------EsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQ---------ESNVRLKLTIVDTVG 104 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhh---------hcCeeEEEEEEeecc
Confidence 3579999999999999999999998886554433222233333333210 225678899999999
No 362
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.77 E-value=5.9e-05 Score=70.88 Aligned_cols=129 Identities=20% Similarity=0.268 Sum_probs=70.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCC------------------CCCcccc-----eeEEEEEEEeCCCCC-CCCc
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFS------------------RPSQTIG-----CTVGVKHITYGSSGS-SSNS 74 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~------------------~~~~t~~-----~~~~~~~~~~~~~~~-~~~~ 74 (333)
.-+++|+|||+..+|||||+--|+++.... .....+| .|..-..+..+.++. .-+-
T Consensus 131 F~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW 210 (641)
T KOG0463|consen 131 FIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW 210 (641)
T ss_pred ceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence 456899999999999999998887654321 1111222 222222222211111 1111
Q ss_pred cCCCCCceEEEEEEeCCCchhhhhhHHhhcc--CCcEEEEEEECCCc---ccHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 019959 75 IKGDSERDFFVELWDISGHERYKDCRSILYS--QINGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGG 149 (333)
Q Consensus 75 i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~--~ad~vIlV~D~s~~---~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 149 (333)
++...+..--+.++|.+|+|+|-...-.-.. -.|..++++-++-. -+.+++.. ...
T Consensus 211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgL----ALa--------------- 271 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGL----ALA--------------- 271 (641)
T ss_pred eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhh----hhh---------------
Confidence 1111222335789999999998655432222 24566666655432 12333321 111
Q ss_pred CCCcEEEEeeCcCCCCc
Q 019959 150 LPVPYVVIGNKADVAAK 166 (333)
Q Consensus 150 ~~~PiivVgNK~Dl~~~ 166 (333)
.++|++||.+|+|+...
T Consensus 272 L~VPVfvVVTKIDMCPA 288 (641)
T KOG0463|consen 272 LHVPVFVVVTKIDMCPA 288 (641)
T ss_pred hcCcEEEEEEeeccCcH
Confidence 26999999999999875
No 363
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.74 E-value=3.5e-05 Score=65.15 Aligned_cols=22 Identities=41% Similarity=0.762 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++++|.+|||||||+|.|+..
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7999999999999999999976
No 364
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00015 Score=73.58 Aligned_cols=115 Identities=21% Similarity=0.265 Sum_probs=81.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCC------------CC--CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEE
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGS------------SF--SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFV 85 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~------------~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 85 (333)
..-+|+++-.-.-|||||...|+-.. |. .+..++-|++.....+.+- ...+.+
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~-------------~~~~~~ 74 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLL-------------HKDYLI 74 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccc-------------cCceEE
Confidence 33479999999999999999998432 11 1334455555554444442 467899
Q ss_pred EEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC
Q 019959 86 ELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163 (333)
Q Consensus 86 ~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl 163 (333)
+++|+|||-+|.+......+-+|+.++.+|+...-.-+......+...+ ....++|.||+|.
T Consensus 75 nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~----------------~~~~~lvinkidr 136 (887)
T KOG0467|consen 75 NLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE----------------GLKPILVINKIDR 136 (887)
T ss_pred EEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc----------------cCceEEEEehhhh
Confidence 9999999999999988888899999999999876544433222222211 3567889999993
No 365
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.71 E-value=0.00012 Score=65.87 Aligned_cols=87 Identities=23% Similarity=0.152 Sum_probs=56.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh----
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFS-RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY---- 96 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~---- 96 (333)
-+|-++|-+.||||||+..+++..... .+.-| .+....-.+.+. .-++++.|.||.-+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyeft-tl~~vpG~~~y~---------------gaKiqlldlpgiiegakdg 123 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFT-TLTTVPGVIRYK---------------GAKIQLLDLPGIIEGAKDG 123 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccce-eEEEecceEecc---------------ccceeeecCcchhcccccC
Confidence 488999999999999999998654322 22222 222223333343 346999999993211
Q ss_pred hhh---HHhhccCCcEEEEEEECCCcccHHH
Q 019959 97 KDC---RSILYSQINGVIFVHDLSQRRTKTS 124 (333)
Q Consensus 97 ~~~---~~~~~~~ad~vIlV~D~s~~~S~~~ 124 (333)
+.. .....+.|+.+++|.|+-.+-+-..
T Consensus 124 kgrg~qviavartcnli~~vld~~kp~~hk~ 154 (358)
T KOG1487|consen 124 KGRGKQVIAVARTCNLIFIVLDVLKPLSHKK 154 (358)
T ss_pred CCCccEEEEEeecccEEEEEeeccCcccHHH
Confidence 111 1134668999999999988876544
No 366
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00053 Score=69.02 Aligned_cols=67 Identities=15% Similarity=0.184 Sum_probs=44.3
Q ss_pred EEEEeCCCc---hhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 85 VELWDISGH---ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 85 l~i~Dt~G~---e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
+.+.|.||. .....-...++..+|++|+|..+.+..+.... .++....+. +.-|+++.||.
T Consensus 208 ivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~~---------------KpniFIlnnkw 271 (749)
T KOG0448|consen 208 IVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSEE---------------KPNIFILNNKW 271 (749)
T ss_pred ceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhcc---------------CCcEEEEechh
Confidence 668899993 33444455678899999999988776554443 344433332 23477888999
Q ss_pred CCCCcc
Q 019959 162 DVAAKE 167 (333)
Q Consensus 162 Dl~~~~ 167 (333)
|....+
T Consensus 272 Dasase 277 (749)
T KOG0448|consen 272 DASASE 277 (749)
T ss_pred hhhccc
Confidence 987653
No 367
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.00049 Score=61.29 Aligned_cols=172 Identities=17% Similarity=0.258 Sum_probs=97.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh---
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC--- 99 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~--- 99 (333)
+|+++|-.-+||||+-.-..++-. +..|.-++-+.+. +++.|. ..-+.+++||.|||-.+-.-
T Consensus 29 ~ilLMG~rRsGKsSI~KVVFhkMs---PneTlflESTski--------~~d~is---~sfinf~v~dfPGQ~~~Fd~s~D 94 (347)
T KOG3887|consen 29 RILLMGLRRSGKSSIQKVVFHKMS---PNETLFLESTSKI--------TRDHIS---NSFINFQVWDFPGQMDFFDPSFD 94 (347)
T ss_pred eEEEEeecccCcchhhheeeeccC---CCceeEeeccCcc--------cHhhhh---hhhcceEEeecCCccccCCCccC
Confidence 699999999999998765554421 1112111111111 111111 23456999999997544221
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
....++++-++|+|+|+-+. -.+.+..+...+.+..+. ++++.+=|...|.|-..++-+.-...++.+.
T Consensus 95 ~e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykv----------Np~in~EVfiHKvDGLsdd~kietqrdI~qr 163 (347)
T KOG3887|consen 95 YEMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKV----------NPNINFEVFIHKVDGLSDDFKIETQRDIHQR 163 (347)
T ss_pred HHHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeec----------CCCceEEEEEEeccCCchhhhhhhHHHHHHH
Confidence 22357899999999998653 233444444444333221 2578888889999977655444444455555
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+.+-....|+.. +++ +++.+|-- ...+-|+|.++++.++.
T Consensus 164 ~~d~l~d~gle~----v~v-------sf~LTSIy-DHSIfEAFSkvVQkLip 203 (347)
T KOG3887|consen 164 TNDELADAGLEK----VQV-------SFYLTSIY-DHSIFEAFSKVVQKLIP 203 (347)
T ss_pred hhHHHHhhhhcc----ceE-------EEEEeeec-chHHHHHHHHHHHHHhh
Confidence 555555556531 221 12225554 45566777777776654
No 368
>PRK12288 GTPase RsgA; Reviewed
Probab=97.60 E-value=0.00013 Score=69.48 Aligned_cols=23 Identities=43% Similarity=0.726 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
-++|+|.+|||||||+|+|++..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcccc
Confidence 37999999999999999999663
No 369
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.59 E-value=0.00021 Score=66.05 Aligned_cols=89 Identities=20% Similarity=0.167 Sum_probs=56.3
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
....+..+|+||+|+|+..+.+..+ .++.++.. +.|+|+|.||+|+.+. +.
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l~----------------~kp~IiVlNK~DL~~~-----------~~ 65 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIRG----------------NKPRLIVLNKADLADP-----------AV 65 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHHC----------------CCCEEEEEEccccCCH-----------HH
Confidence 4456889999999999987755332 12222211 4689999999999643 22
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
...|.+.+.-. ..+++. +||+++.|++++.+.+.+.+-
T Consensus 66 ~~~~~~~~~~~----~~~vi~---------iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 66 TKQWLKYFEEK----GIKALA---------INAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred HHHHHHHHHHc----CCeEEE---------EECCCcccHHHHHHHHHHHHH
Confidence 33333322100 023444 999999999888877766553
No 370
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.55 E-value=0.00016 Score=69.44 Aligned_cols=23 Identities=48% Similarity=0.671 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.+|+|||.+|||||||+|++++.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~ 177 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQ 177 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 38999999999999999999974
No 371
>PRK01889 GTPase RsgA; Reviewed
Probab=97.53 E-value=0.00057 Score=65.51 Aligned_cols=83 Identities=14% Similarity=0.128 Sum_probs=56.8
Q ss_pred ccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHH
Q 019959 104 YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQW 183 (333)
Q Consensus 104 ~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~ 183 (333)
..++|.+++|+++...-....+..++..+... +++.+||.||+||.+.. +...++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---------------~i~piIVLNK~DL~~~~----------~~~~~~ 164 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---------------GAEPVIVLTKADLCEDA----------EEKIAE 164 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---------------CCCEEEEEEChhcCCCH----------HHHHHH
Confidence 56899999999997555555677777766665 57888999999997541 212222
Q ss_pred HHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHH
Q 019959 184 VEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKF 225 (333)
Q Consensus 184 ~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l 225 (333)
...... ..+.+. +||+++.|++++...+
T Consensus 165 ~~~~~~-----g~~Vi~---------vSa~~g~gl~~L~~~L 192 (356)
T PRK01889 165 VEALAP-----GVPVLA---------VSALDGEGLDVLAAWL 192 (356)
T ss_pred HHHhCC-----CCcEEE---------EECCCCccHHHHHHHh
Confidence 222221 245666 9999998887766655
No 372
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.50 E-value=0.00019 Score=65.23 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|.+|||||||+|+|++.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhh
Confidence 7899999999999999999965
No 373
>PRK13796 GTPase YqeH; Provisional
Probab=97.50 E-value=0.00015 Score=69.66 Aligned_cols=23 Identities=48% Similarity=0.694 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++.|||.+|||||||+|+|+..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhh
Confidence 37999999999999999999854
No 374
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.48 E-value=0.00013 Score=71.08 Aligned_cols=56 Identities=36% Similarity=0.321 Sum_probs=39.9
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
.+.|.+||.|||||||+||.|.+.+... -..|.|-+-...++.+.. .+.|.|+||-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls~----------------~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLSP----------------SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceee-eecCCCCcceeEEEEcCC----------------CceecCCCCc
Confidence 6899999999999999999999876532 223334444444454432 2889999993
No 375
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00012 Score=69.55 Aligned_cols=142 Identities=20% Similarity=0.223 Sum_probs=98.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC--------CCCCCC--------CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEE
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG--------SSFSRP--------SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFV 85 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~--------~~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 85 (333)
-+|.|+..-.+||||...|++.- ...... ...-|+++..-.+.++ =+.+++
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fd-------------wkg~ri 104 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFD-------------WKGHRI 104 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecc-------------cccceE
Confidence 36888889999999999998732 111111 1112445555555544 456789
Q ss_pred EEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC
Q 019959 86 ELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 165 (333)
Q Consensus 86 ~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~ 165 (333)
+++||||+-+|+.....+++-.|+++.|||.+-...-+.+..|.+.- + .++|-+...||+|...
T Consensus 105 nlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqad-k---------------~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 105 NLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD-K---------------FKIPAHCFINKMDKLA 168 (753)
T ss_pred eeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhcc-c---------------cCCchhhhhhhhhhhh
Confidence 99999999999888888899999999999999887777788887542 1 2689888899999865
Q ss_pred ccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccc
Q 019959 166 KEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTE 200 (333)
Q Consensus 166 ~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E 200 (333)
.+- ......+-+++|..+..-.+|+-|
T Consensus 169 anf--------e~avdsi~ekl~ak~l~l~lpi~e 195 (753)
T KOG0464|consen 169 ANF--------ENAVDSIEEKLGAKALKLQLPIGE 195 (753)
T ss_pred hhh--------hhHHHHHHHHhCCceEEEEecccc
Confidence 421 133445556677655443445544
No 376
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.42 E-value=0.00043 Score=58.48 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
++|+|..|+|||||+++++..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 689999999999999999865
No 377
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.41 E-value=0.00051 Score=64.77 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
--|+|+|++|+||||++..+..
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4789999999999999998863
No 378
>PRK12289 GTPase RsgA; Reviewed
Probab=97.38 E-value=0.00031 Score=67.06 Aligned_cols=23 Identities=43% Similarity=0.690 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
.++|+|.+|||||||+|+|++..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 38999999999999999999653
No 379
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.36 E-value=0.00035 Score=64.62 Aligned_cols=22 Identities=36% Similarity=0.733 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-.+++|.+|||||||+|+|...
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 5789999999999999999853
No 380
>PRK13695 putative NTPase; Provisional
Probab=97.36 E-value=0.0031 Score=53.89 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
+||+|+|.+|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998753
No 381
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.34 E-value=0.0012 Score=60.91 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=18.6
Q ss_pred eEEEEECCCCCCHHHHHHHHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~ 42 (333)
-.|+++|.+||||||++-.+.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA 93 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLA 93 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 468889999999999998886
No 382
>PRK14974 cell division protein FtsY; Provisional
Probab=97.32 E-value=0.00033 Score=66.39 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=18.9
Q ss_pred ceEEEEECCCCCCHHHHHHHHH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
...|+++|.+||||||++.++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA 161 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLA 161 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 3589999999999999777765
No 383
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.32 E-value=0.00055 Score=66.43 Aligned_cols=74 Identities=20% Similarity=0.221 Sum_probs=55.1
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCccc----------HHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRT----------KTSLQKWAVEIATSGTFSAPLASGGPGGL 150 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S----------~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 150 (333)
....+.++|++|+...+..|..++.++++||||+++++-+. +.+.-..+..+.....+ .
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~-----------~ 302 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF-----------K 302 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG-----------T
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc-----------c
Confidence 34567999999998888899999999999999999875322 33334455666555332 3
Q ss_pred CCcEEEEeeCcCCCC
Q 019959 151 PVPYVVIGNKADVAA 165 (333)
Q Consensus 151 ~~PiivVgNK~Dl~~ 165 (333)
+.|+||+.||.|+..
T Consensus 303 ~~~iil~lnK~D~f~ 317 (389)
T PF00503_consen 303 NTPIILFLNKIDLFE 317 (389)
T ss_dssp TSEEEEEEE-HHHHH
T ss_pred cCceEEeeecHHHHH
Confidence 789999999999754
No 384
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.29 E-value=0.00058 Score=63.51 Aligned_cols=89 Identities=19% Similarity=0.161 Sum_probs=56.2
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
....+..+|+||+|+|+.++.+... .++.++.. +.|+++|.||+|+.+. +.
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~----------------~kp~iiVlNK~DL~~~-----------~~ 68 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG----------------NKPRLLILNKSDLADP-----------EV 68 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC----------------CCCEEEEEEchhcCCH-----------HH
Confidence 3456889999999999987755332 12222211 4689999999999643 22
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
...|.+.+.-. ..+++. +||+++.|++++++.+...+-
T Consensus 69 ~~~~~~~~~~~----~~~vi~---------vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 69 TKKWIEYFEEQ----GIKALA---------INAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred HHHHHHHHHHc----CCeEEE---------EECCCcccHHHHHHHHHHHHH
Confidence 33343322100 023444 999999999888877766543
No 385
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.23 E-value=0.0039 Score=61.52 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=44.3
Q ss_pred EEEEEeCCC-------------chhhhhhHHhhccCCcEEEEEEECCCcccH-HHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 019959 84 FVELWDISG-------------HERYKDCRSILYSQINGVIFVHDLSQRRTK-TSLQKWAVEIATSGTFSAPLASGGPGG 149 (333)
Q Consensus 84 ~l~i~Dt~G-------------~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~-~~l~~~~~~i~~~~~~~~~~~~~~~~~ 149 (333)
...+.|.|| .+....+...|..+.++||+|+--..-+.- .++......+.-+
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~-------------- 478 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPH-------------- 478 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCC--------------
Confidence 466899999 233456677788999999999854333221 2233333333222
Q ss_pred CCCcEEEEeeCcCCCCc
Q 019959 150 LPVPYVVIGNKADVAAK 166 (333)
Q Consensus 150 ~~~PiivVgNK~Dl~~~ 166 (333)
....|+|.+|.|+.++
T Consensus 479 -GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 479 -GRRTIFVLTKVDLAEK 494 (980)
T ss_pred -CCeeEEEEeecchhhh
Confidence 4568999999999876
No 386
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.21 E-value=0.00075 Score=62.75 Aligned_cols=24 Identities=38% Similarity=0.671 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
-.++++|.+|||||||+|.|++..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 379999999999999999999754
No 387
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.00023 Score=65.30 Aligned_cols=176 Identities=15% Similarity=0.164 Sum_probs=96.2
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC---CCCCCCCccccee--EEE-EEEEeCCC-----------CCCCC-----ccC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG---SSFSRPSQTIGCT--VGV-KHITYGSS-----------GSSSN-----SIK 76 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~---~~~~~~~~t~~~~--~~~-~~~~~~~~-----------~~~~~-----~i~ 76 (333)
...++|.-+|.-.-||||++.++.+- .|..+-...+++. |.. +....+++ +++.. .+.
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~ 115 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP 115 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence 34578999999999999999999754 3333333322222 211 11111110 01100 111
Q ss_pred CCCCc---eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCC----cccHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 019959 77 GDSER---DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQ----RRTKTSLQKWAVEIATSGTFSAPLASGGPGG 149 (333)
Q Consensus 77 ~~~~~---~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~----~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 149 (333)
+..++ ...+.+.|+||++-.....-.-..-.|+.++.+..+. +.+-+++.. -++.+.
T Consensus 116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~L-------------- 179 (466)
T KOG0466|consen 116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMKL-------------- 179 (466)
T ss_pred CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhhh--------------
Confidence 11111 1347899999998766543322333577777776654 334444422 233333
Q ss_pred CCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 150 LPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 150 ~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
..++++-||+||..++... +-.+.++.|.+-. ..+..|.+. +||.-++|++-+.+.++..+
T Consensus 180 --khiiilQNKiDli~e~~A~----eq~e~I~kFi~~t----~ae~aPiiP---------isAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 180 --KHIIILQNKIDLIKESQAL----EQHEQIQKFIQGT----VAEGAPIIP---------ISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred --ceEEEEechhhhhhHHHHH----HHHHHHHHHHhcc----ccCCCceee---------ehhhhccChHHHHHHHHhcC
Confidence 3588999999998753110 0123333333322 222345665 99999999988877776554
No 388
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.0077 Score=60.16 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
-.|+|+|++|+||||++..|..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999988874
No 389
>PRK00098 GTPase RsgA; Reviewed
Probab=97.14 E-value=0.0009 Score=62.56 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
.++|+|.+|||||||+|+|++..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999653
No 390
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.04 E-value=0.0023 Score=44.23 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=29.6
Q ss_pred CCcEEEEEEECCCcc--cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 106 QINGVIFVHDLSQRR--TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 106 ~ad~vIlV~D~s~~~--S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
=.++|+|++|+|... +.+.-...+++++.... +.|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-------------~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-------------NKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-------------TS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-------------CCCEEEEEeccC
Confidence 368999999999765 45555567888888753 799999999998
No 391
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.0014 Score=62.36 Aligned_cols=184 Identities=13% Similarity=0.108 Sum_probs=100.5
Q ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCC------CCCCc-----ccceeEEEEEEEeCCCCCCCC---ccCC--
Q 019959 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSF------SRPSQ-----TIGCTVGVKHITYGSSGSSSN---SIKG-- 77 (333)
Q Consensus 14 ~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~------~~~~~-----t~~~~~~~~~~~~~~~~~~~~---~i~~-- 77 (333)
.+.++..+++++++|.--+||||+-..++...-. ..|.. .-.--|....+..+.. .+. .+.-
T Consensus 72 ~~~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~E--eR~kgKtvEvGr 149 (501)
T KOG0459|consen 72 CGEYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGE--ERDKGKTVEVGR 149 (501)
T ss_pred ccCCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchh--hhhccceeeeee
Confidence 4667788999999999999999987666422100 00000 0000011111111000 000 0000
Q ss_pred --CCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcc---cHHHH---HHHHHHHHhcCCCCCCCCCCCCCC
Q 019959 78 --DSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR---TKTSL---QKWAVEIATSGTFSAPLASGGPGG 149 (333)
Q Consensus 78 --~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~---S~~~l---~~~~~~i~~~~~~~~~~~~~~~~~ 149 (333)
-....-.+.|.|++|+..|....---..+||.-++|.++...+ -|+.= +......+..+
T Consensus 150 A~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g------------- 216 (501)
T KOG0459|consen 150 AYFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG------------- 216 (501)
T ss_pred EEEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-------------
Confidence 0012345889999999888765555567899999999884432 13221 11111122221
Q ss_pred CCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHH
Q 019959 150 LPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVM 223 (333)
Q Consensus 150 ~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~ 223 (333)
-...|++.||+|-...+.+.--..++.+....+.+.+|...+.. ..|+. +|..+|.++++...
T Consensus 217 -v~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d-~~f~p---------~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 217 -VKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPD-KHFVP---------VSGLTGANVKDRTD 279 (501)
T ss_pred -cceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCC-ceeee---------cccccccchhhccc
Confidence 24578889999976543222222344566666777777654332 44555 99999988877543
No 392
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.0022 Score=62.64 Aligned_cols=149 Identities=21% Similarity=0.213 Sum_probs=95.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC------------CCC--CCCcccceeEEEEEEEeCCCC--CCCCccCC-CCCceEEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS------------SFS--RPSQTIGCTVGVKHITYGSSG--SSSNSIKG-DSERDFFV 85 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~------------~~~--~~~~t~~~~~~~~~~~~~~~~--~~~~~i~~-~~~~~~~l 85 (333)
++.||..-.-|||||...|.... |.. ...+.-++++....+.+-..- ..-..++. .++..+.+
T Consensus 21 NmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLi 100 (842)
T KOG0469|consen 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLI 100 (842)
T ss_pred cceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeE
Confidence 56778888899999999997431 211 223333555544444331100 00011222 56778999
Q ss_pred EEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC
Q 019959 86 ELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 165 (333)
Q Consensus 86 ~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~ 165 (333)
+++|.||+-+|.+.....++-.|+.+.|+|.-+....+.-....+.+.+. +.-+||.||+|..-
T Consensus 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER----------------IkPvlv~NK~DRAl 164 (842)
T KOG0469|consen 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER----------------IKPVLVMNKMDRAL 164 (842)
T ss_pred EeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh----------------ccceEEeehhhHHH
Confidence 99999999999999889999999999999988766544433344445443 44457789999653
Q ss_pred ccCCccCcccHHHHHHHHHHHcC
Q 019959 166 KEGTRGSSGNLVDAARQWVEKQG 188 (333)
Q Consensus 166 ~~~r~v~~~~~~~~~~~~~~~~~ 188 (333)
-+ -+++.+++.+..+...+..+
T Consensus 165 LE-Lq~~~EeLyqtf~R~VE~vN 186 (842)
T KOG0469|consen 165 LE-LQLSQEELYQTFQRIVENVN 186 (842)
T ss_pred Hh-hcCCHHHHHHHHHHHHhccc
Confidence 22 45666666666666665544
No 393
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.0034 Score=52.82 Aligned_cols=24 Identities=38% Similarity=0.652 Sum_probs=21.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHHc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..+||.|-|.+|||||||+.++.+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHH
Confidence 357999999999999999999873
No 394
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.97 E-value=0.0045 Score=60.46 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~ 42 (333)
.-|+++|.+||||||++..|.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999986
No 395
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.0021 Score=69.50 Aligned_cols=50 Identities=22% Similarity=0.291 Sum_probs=34.9
Q ss_pred ccCCcEEEEEEECCCcccHH---------HHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC
Q 019959 104 YSQINGVIFVHDLSQRRTKT---------SLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 165 (333)
Q Consensus 104 ~~~ad~vIlV~D~s~~~S~~---------~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~ 165 (333)
.+-.||||++.|+.+.-+-. .|..=+.++.+... ..+|+.|++||.|+..
T Consensus 212 ~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~------------~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 212 RRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH------------ARLPVYLVLTKADLLP 270 (1188)
T ss_pred CCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc------------cCCceEEEEecccccc
Confidence 34689999999997753311 12333555655543 4799999999999986
No 396
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.87 E-value=0.0062 Score=58.53 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
-.++|+|++||||||++.+|..
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3788999999999999999974
No 397
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.021 Score=55.79 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
-+|+|||++||||||++..|.+
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998864
No 398
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.83 E-value=0.0011 Score=62.90 Aligned_cols=59 Identities=22% Similarity=0.356 Sum_probs=43.6
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
.....++|.|||.+||||||+||+|....... -..+.|++-..+.+.++ -.+.|.|.||
T Consensus 248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~-vg~~pGvT~smqeV~Ld----------------k~i~llDsPg 306 (435)
T KOG2484|consen 248 ELKTSIRVGIIGYPNVGKSSVINSLKRRKACN-VGNVPGVTRSMQEVKLD----------------KKIRLLDSPG 306 (435)
T ss_pred ccCcceEeeeecCCCCChhHHHHHHHHhcccc-CCCCccchhhhhheecc----------------CCceeccCCc
Confidence 34667999999999999999999999776522 23334555666666654 2388999999
No 399
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.71 E-value=0.0018 Score=55.25 Aligned_cols=68 Identities=21% Similarity=0.148 Sum_probs=39.6
Q ss_pred eEEEEEEeCCCchhh-----hhhHHhh-ccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEE
Q 019959 82 DFFVELWDISGHERY-----KDCRSIL-YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYV 155 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~-----~~~~~~~-~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pii 155 (333)
.+.+.|.|++|...+ ..+.... ....+.+++|+|..... ....+...+.+.. + ..-
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~--------------~-~~~ 143 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL--------------G-ITG 143 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC--------------C-CCE
Confidence 455788999996321 2121111 23589999999986432 2223444443332 2 255
Q ss_pred EEeeCcCCCCcc
Q 019959 156 VIGNKADVAAKE 167 (333)
Q Consensus 156 vVgNK~Dl~~~~ 167 (333)
+|.||.|.....
T Consensus 144 viltk~D~~~~~ 155 (173)
T cd03115 144 VILTKLDGDARG 155 (173)
T ss_pred EEEECCcCCCCc
Confidence 777999987653
No 400
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.69 E-value=0.0065 Score=52.26 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=43.2
Q ss_pred eEEEEEEeCCCchhhhhh--HH---hhccCCcEEEEEEECCCcccHHHHHH-HHHHHHhcCCCCCCCCCCCCCCCCCcEE
Q 019959 82 DFFVELWDISGHERYKDC--RS---ILYSQINGVIFVHDLSQRRTKTSLQK-WAVEIATSGTFSAPLASGGPGGLPVPYV 155 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~--~~---~~~~~ad~vIlV~D~s~~~S~~~l~~-~~~~i~~~~~~~~~~~~~~~~~~~~Pii 155 (333)
.....|..+.|...-..+ .. ...-..+.+|.|+|+.+......+.. +..++ .. -=+
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi-~~-----------------ADv 145 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQI-AF-----------------ADV 145 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHH-CT------------------SE
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcc-hh-----------------cCE
Confidence 345667788884333332 00 01235789999999977544444433 33333 22 235
Q ss_pred EEeeCcCCCCccCCccCcccHHHHHHHHHHHcC
Q 019959 156 VIGNKADVAAKEGTRGSSGNLVDAARQWVEKQG 188 (333)
Q Consensus 156 vVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~ 188 (333)
||.||+|+..... . .+..+++.++++
T Consensus 146 IvlnK~D~~~~~~-~------i~~~~~~ir~ln 171 (178)
T PF02492_consen 146 IVLNKIDLVSDEQ-K------IERVREMIRELN 171 (178)
T ss_dssp EEEE-GGGHHHH---------HHHHHHHHHHH-
T ss_pred EEEeccccCChhh-H------HHHHHHHHHHHC
Confidence 7789999987531 0 244555555554
No 401
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.69 E-value=0.0048 Score=57.05 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=22.8
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHc
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
...++.|.|+|-||||||||+|++..
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~ 165 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRN 165 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHH
Confidence 45568999999999999999999864
No 402
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.65 E-value=0.0018 Score=60.05 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
-.++|||++|.|||+++++|....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHC
Confidence 369999999999999999999653
No 403
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.63 E-value=0.029 Score=55.10 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
.|+|+|++||||||++-.|.
T Consensus 223 ~i~~vGptGvGKTTt~~kLA 242 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLA 242 (424)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999888775
No 404
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.53 E-value=0.011 Score=48.65 Aligned_cols=107 Identities=16% Similarity=0.136 Sum_probs=62.2
Q ss_pred EEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhc
Q 019959 25 LVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILY 104 (333)
Q Consensus 25 ~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~ 104 (333)
+.-|.+|+|||++.-.+...-. .....+ ..+..+..++ ...+.+.|+|+++.. .......+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~-------~~vd~D~~~~---------~~~yd~VIiD~p~~~--~~~~~~~l 64 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALA-KLGKRV-------LLLDADLGLA---------NLDYDYIIIDTGAGI--SDNVLDFF 64 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHH-HCCCcE-------EEEECCCCCC---------CCCCCEEEEECCCCC--CHHHHHHH
Confidence 3457889999999877752210 111111 1122221110 112568999998743 22234568
Q ss_pred cCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 105 SQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 105 ~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
..+|.+++|.+.+. .++..+...++.+.... ...++.+|.|+++-.
T Consensus 65 ~~aD~vviv~~~~~-~s~~~~~~~l~~l~~~~-------------~~~~~~lVvN~~~~~ 110 (139)
T cd02038 65 LAADEVIVVTTPEP-TSITDAYALIKKLAKQL-------------RVLNFRVVVNRAESP 110 (139)
T ss_pred HhCCeEEEEcCCCh-hHHHHHHHHHHHHHHhc-------------CCCCEEEEEeCCCCH
Confidence 89999999998864 45555555555554432 145678999999744
No 405
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.0061 Score=60.91 Aligned_cols=139 Identities=17% Similarity=0.238 Sum_probs=87.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC-----C-----------cccceeEEEEEEEeCCCCCCCCccCCCCCceEEEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRP-----S-----------QTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVE 86 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~-----~-----------~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 86 (333)
+|-++-.--+|||||..+.+...-.... . ..-|++...-..... -+.+.++
T Consensus 41 NIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~-------------w~~~~iN 107 (721)
T KOG0465|consen 41 NIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFT-------------WRDYRIN 107 (721)
T ss_pred ccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeee-------------eccceeE
Confidence 5667777789999999998733111000 0 001112211111111 2367899
Q ss_pred EEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 87 LWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 87 i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
|+||||+-+|.--....++-.|+.|+|+|......-+....|.+ +.++ ++|.|...||+|....
T Consensus 108 iIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry---------------~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 108 IIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRY---------------NVPRICFINKMDRMGA 171 (721)
T ss_pred EecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhc---------------CCCeEEEEehhhhcCC
Confidence 99999998887777777888999999999887765566666755 3444 6899999999998765
Q ss_pred cCCccCcccHHHHHHHHHHHcCCCCCCcCCCc
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGLLPSSEELPL 198 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 198 (333)
+. .....++..+++..+..-++|+
T Consensus 172 ~~--------~~~l~~i~~kl~~~~a~vqiPi 195 (721)
T KOG0465|consen 172 SP--------FRTLNQIRTKLNHKPAVVQIPI 195 (721)
T ss_pred Ch--------HHHHHHHHhhcCCchheeEccc
Confidence 32 2445555556554333323443
No 406
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.45 E-value=0.016 Score=54.72 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
=.+|-|.-|+|||||+++++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3567899999999999999854
No 407
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.33 E-value=0.0031 Score=50.12 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|.|.+|||||||.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999854
No 408
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.29 E-value=0.13 Score=49.97 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=21.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
+.+=|.|||+--+|||||+.||..
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHH
Confidence 346799999999999999999974
No 409
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.28 E-value=0.02 Score=55.16 Aligned_cols=65 Identities=20% Similarity=0.183 Sum_probs=38.7
Q ss_pred EEEEEEeCCCchhhhh----hHHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcE-E
Q 019959 83 FFVELWDISGHERYKD----CRSILYS--QINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY-V 155 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~----~~~~~~~--~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pi-i 155 (333)
+.+.|+||.|...+.. ....++. ...-+.||++++-. .+.+...++.+.. +|+ -
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~-----------------~~i~~ 342 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL-----------------FPIDG 342 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc-----------------CCcce
Confidence 4688999999543322 2223333 34456677888754 4555555555433 343 4
Q ss_pred EEeeCcCCCCc
Q 019959 156 VIGNKADVAAK 166 (333)
Q Consensus 156 vVgNK~Dl~~~ 166 (333)
++.||.|....
T Consensus 343 ~I~TKlDET~s 353 (407)
T COG1419 343 LIFTKLDETTS 353 (407)
T ss_pred eEEEcccccCc
Confidence 67899997754
No 410
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.28 E-value=0.03 Score=44.89 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
-++|.|++|+|||+|++.+...-
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999998653
No 411
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.28 E-value=0.027 Score=43.57 Aligned_cols=82 Identities=16% Similarity=0.107 Sum_probs=49.9
Q ss_pred EEEEC-CCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 24 VLVVG-DSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 24 I~ivG-~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
|+|+| ..|+||||+...+...-- .....+ -.+.. +..+.+.|+|+++..... ...
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~-~~~~~v-------l~~d~--------------d~~~d~viiD~p~~~~~~--~~~ 57 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALA-RRGKRV-------LLIDL--------------DPQYDYIIIDTPPSLGLL--TRN 57 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHH-hCCCcE-------EEEeC--------------CCCCCEEEEeCcCCCCHH--HHH
Confidence 56777 568999999887763211 111111 11112 122558999999864322 225
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAV 130 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~ 130 (333)
.+..+|.+|++.+.+ ..++..+..+++
T Consensus 58 ~l~~ad~viv~~~~~-~~s~~~~~~~~~ 84 (104)
T cd02042 58 ALAAADLVLIPVQPS-PLDLDGLEKLLE 84 (104)
T ss_pred HHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence 577899999999875 446666666655
No 412
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.25 E-value=0.059 Score=50.92 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~~ 45 (333)
.+|-|--|+|||||++.++.+.
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~ 25 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANR 25 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhcc
Confidence 4567889999999999999653
No 413
>PRK10867 signal recognition particle protein; Provisional
Probab=96.19 E-value=0.011 Score=58.03 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=18.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
..-|+++|.+||||||++-.|.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHH
Confidence 3578999999999999666664
No 414
>PRK08118 topology modulation protein; Reviewed
Probab=96.19 E-value=0.0041 Score=53.04 Aligned_cols=22 Identities=23% Similarity=0.634 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
||+|+|++|+|||||...+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999854
No 415
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.18 E-value=0.0052 Score=43.35 Aligned_cols=20 Identities=35% Similarity=0.660 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
-.+|.|+.|+|||||+.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999886
No 416
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.16 E-value=0.025 Score=52.47 Aligned_cols=88 Identities=18% Similarity=0.131 Sum_probs=56.8
Q ss_pred hhccCCcEEEEEEECCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
--..+.|-+|+|+.+.+++ +...+.+++-.+... ++.-|+|.||+||.++..... ++.
T Consensus 75 p~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---------------gi~pvIvlnK~DL~~~~~~~~------~~~ 133 (301)
T COG1162 75 PPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---------------GIEPVIVLNKIDLLDDEEAAV------KEL 133 (301)
T ss_pred CcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---------------CCcEEEEEEccccCcchHHHH------HHH
Confidence 3345688888999998887 455566666655544 566777899999997632110 122
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
..+....| .+.+. +|++++.+++++.+.+.
T Consensus 134 ~~~y~~~g-------y~v~~---------~s~~~~~~~~~l~~~l~ 163 (301)
T COG1162 134 LREYEDIG-------YPVLF---------VSAKNGDGLEELAELLA 163 (301)
T ss_pred HHHHHhCC-------eeEEE---------ecCcCcccHHHHHHHhc
Confidence 33334455 34555 99999977776665554
No 417
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.15 E-value=0.047 Score=57.02 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|||+.||||||++..|...
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhh
Confidence 6899999999999999999843
No 418
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.14 E-value=0.0043 Score=55.84 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
=|+|||++|||||||++-+.+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999865
No 419
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.14 E-value=0.037 Score=47.71 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 7999999999999999999865
No 420
>PRK07261 topology modulation protein; Provisional
Probab=96.12 E-value=0.0049 Score=52.75 Aligned_cols=22 Identities=27% Similarity=0.597 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+|+|+|.+|+|||||...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998743
No 421
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.02 E-value=0.054 Score=46.24 Aligned_cols=82 Identities=12% Similarity=0.107 Sum_probs=58.5
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
..+.+.|+||++.... .....+..+|.+|+|...+. .+...+..++..+... +.|+.+|.||
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---------------~~~~~vV~N~ 152 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---------------GIPVGVVINK 152 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---------------CCCEEEEEeC
Confidence 4567999999975322 23345678999999999884 4677777777766654 4678899999
Q ss_pred cCCCCccCCccCcccHHHHHHHHHHHcCC
Q 019959 161 ADVAAKEGTRGSSGNLVDAARQWVEKQGL 189 (333)
Q Consensus 161 ~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~ 189 (333)
+|..... .++++++++++|+
T Consensus 153 ~~~~~~~---------~~~~~~~~~~~~~ 172 (179)
T cd03110 153 YDLNDEI---------AEEIEDYCEEEGI 172 (179)
T ss_pred CCCCcch---------HHHHHHHHHHcCC
Confidence 9975421 2567778888774
No 422
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.01 E-value=0.006 Score=57.97 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=51.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC--------------CCCC-------CCCcccceeEEEEEEEeCCCCCCCCccCCCCCc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG--------------SSFS-------RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~--------------~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 81 (333)
-|.+||-.|+||||.+-.|..- .|.. ......++.|+......+...--...++.-...
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke 182 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKE 182 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhc
Confidence 5889999999999988877521 1111 011112333332211111000000000001245
Q ss_pred eEEEEEEeCCCchh-----hhhhHHh-hccCCcEEEEEEECCCcccH
Q 019959 82 DFFVELWDISGHER-----YKDCRSI-LYSQINGVIFVHDLSQRRTK 122 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~-----~~~~~~~-~~~~ad~vIlV~D~s~~~S~ 122 (333)
.+.+.|.||+|... |..+... -.-..|-+|+|.|++-...-
T Consensus 183 ~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaa 229 (483)
T KOG0780|consen 183 NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAA 229 (483)
T ss_pred CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhH
Confidence 67899999999321 2222111 13368999999999876543
No 423
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=95.99 E-value=0.085 Score=50.31 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
.+|.|--|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 677899999999999999854
No 424
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.96 E-value=0.0045 Score=52.25 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999854
No 425
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=95.95 E-value=0.069 Score=41.78 Aligned_cols=63 Identities=11% Similarity=0.052 Sum_probs=42.0
Q ss_pred EEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 84 ~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
.+.|.|+++.... .....+..+|.+|+|.+.+. .+...+..+++.+.+... .....+.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~-~s~~~~~~~~~~l~~~~~-----------~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL-PSIRNAKRLLELLRVLDY-----------SLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-HHHHHHHHHHHHHHHcCC-----------CCcCceEEEecC
Confidence 4889999985433 22345678999999987764 467777777777766532 012456777775
No 426
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.95 E-value=0.07 Score=51.83 Aligned_cols=112 Identities=17% Similarity=0.223 Sum_probs=59.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCc------ccc----------------eeEEEEEEEeCCCCCCCCc--cCC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ------TIG----------------CTVGVKHITYGSSGSSSNS--IKG 77 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~------t~~----------------~~~~~~~~~~~~~~~~~~~--i~~ 77 (333)
-+|+|||+.|||||||+..|++.--...... .+| ..|..+.+.++-.. -+.. -.+
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~-ARK~LG~fG 692 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQE-ARKQLGTFG 692 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHH-HHHHhhhhh
Confidence 4899999999999999999986522111110 000 01111111110000 0000 000
Q ss_pred CCCceEEEEEEeCCCchhh-hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhc
Q 019959 78 DSERDFFVELWDISGHERY-KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATS 135 (333)
Q Consensus 78 ~~~~~~~l~i~Dt~G~e~~-~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~ 135 (333)
....-..+.|-|++|...- ..+....+...|++|+=- .|+--..+.+..+...|.++
T Consensus 693 L~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDE-PTNNLDIESIDALaEAIney 750 (807)
T KOG0066|consen 693 LASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDE-PTNNLDIESIDALAEAINEY 750 (807)
T ss_pred hhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecC-CCCCcchhhHHHHHHHHHhc
Confidence 1122346889999885443 455666788888887743 34433456666666666666
No 427
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.94 E-value=0.0063 Score=52.50 Aligned_cols=23 Identities=35% Similarity=0.752 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.||+|+|++|+||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999999866
No 428
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.94 E-value=0.056 Score=49.79 Aligned_cols=22 Identities=27% Similarity=0.509 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
-+|+++|++|+|||||+..+..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 4999999999999999988863
No 429
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.93 E-value=0.0058 Score=49.99 Aligned_cols=20 Identities=30% Similarity=0.687 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHc
Q 019959 24 VLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~ 43 (333)
|+++|.+|+|||||+..+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999983
No 430
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.84 E-value=0.058 Score=52.93 Aligned_cols=80 Identities=18% Similarity=0.064 Sum_probs=45.6
Q ss_pred eEEEEEEeCCCchhh----hhhHHhh--ccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEE
Q 019959 82 DFFVELWDISGHERY----KDCRSIL--YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYV 155 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~----~~~~~~~--~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pii 155 (333)
.+.+.|.||+|.-.. ......+ .-..|.+++|+|++.. +.+..+...+.... + ..=
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v--------------~-i~g 243 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL--------------G-LTG 243 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC--------------C-CCE
Confidence 456899999994221 1111111 2357899999998743 34444444444321 1 235
Q ss_pred EEeeCcCCCCccCCccCcccHHHHHHHHHHHcCC
Q 019959 156 VIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGL 189 (333)
Q Consensus 156 vVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~ 189 (333)
+|.||.|-.... -.+..++...++
T Consensus 244 iIlTKlD~~~~~----------G~~lsi~~~~~~ 267 (428)
T TIGR00959 244 VVLTKLDGDARG----------GAALSVRSVTGK 267 (428)
T ss_pred EEEeCccCcccc----------cHHHHHHHHHCc
Confidence 778999965442 235666666663
No 431
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.83 E-value=0.0067 Score=49.33 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|..|+|||||++.+++.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 7999999999999999988865
No 432
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.82 E-value=0.007 Score=54.05 Aligned_cols=22 Identities=45% Similarity=0.601 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|+|++|+|||||+|-+-+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4899999999999999988654
No 433
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=0.0093 Score=53.80 Aligned_cols=90 Identities=16% Similarity=0.202 Sum_probs=52.3
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
...+..|++.|..++ |++++++....- ....+|..++|..-.-.-.+ ...--.++|..+|.....
T Consensus 42 ~~~E~~I~~~Gn~~~--tt~I~~~FdR~e-~~~~ptlaLEYtygRR~~g~------------~~kdiaN~WELGgg~~~~ 106 (363)
T KOG3929|consen 42 EKFEFFIGSKGNGGK--TTIILRCFDRDE-PPKPPTLALEYTYGRRAKGH------------NPKDIANFWELGGGTSLL 106 (363)
T ss_pred ccceeEEEEecCCce--eEeehhhcCccc-CCCCCceeeeeehhhhccCC------------CchhHHHHHHhcCCccHH
Confidence 455678888888765 999999885533 23344555544322221110 011225789999965554
Q ss_pred hhHHhhcc----CCcEEEEEEECCCcccH
Q 019959 98 DCRSILYS----QINGVIFVHDLSQRRTK 122 (333)
Q Consensus 98 ~~~~~~~~----~ad~vIlV~D~s~~~S~ 122 (333)
.+..--++ ..=.+|++.|+++++.|
T Consensus 107 ~LLsVPit~~~l~~~slIL~LDls~p~~~ 135 (363)
T KOG3929|consen 107 DLLSVPITGDTLRTFSLILVLDLSKPNDL 135 (363)
T ss_pred HHhcCcccccchhhhhheeeeecCChHHH
Confidence 44332222 23367899999998753
No 434
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=95.77 E-value=0.16 Score=42.94 Aligned_cols=65 Identities=11% Similarity=-0.064 Sum_probs=44.0
Q ss_pred EEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC
Q 019959 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163 (333)
Q Consensus 84 ~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl 163 (333)
.+.|+|+++.-... ....+..+|.+|+|.+.+. .++..+..++..+.... ...+.+|.|+.|.
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--------------~~~~~iv~N~~~~ 126 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--------------IKVVGVIVNRVRP 126 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--------------CceEEEEEeCCcc
Confidence 58899998853322 2344678999999998874 45666666666665531 2346788999987
Q ss_pred CC
Q 019959 164 AA 165 (333)
Q Consensus 164 ~~ 165 (333)
..
T Consensus 127 ~~ 128 (179)
T cd02036 127 DM 128 (179)
T ss_pred cc
Confidence 54
No 435
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.75 E-value=0.077 Score=39.53 Aligned_cols=70 Identities=21% Similarity=0.167 Sum_probs=44.3
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh-HHh
Q 019959 24 VLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC-RSI 102 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~-~~~ 102 (333)
+++.|..|+|||++...+...--. . | .+.+.++ .+.++|+++.-..... ...
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-~-----g----~~v~~~~-----------------d~iivD~~~~~~~~~~~~~~ 54 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-R-----G----KRVLLID-----------------DYVLIDTPPGLGLLVLLCLL 54 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-C-----C----CeEEEEC-----------------CEEEEeCCCCccchhhhhhh
Confidence 678899999999999988743110 0 1 1111111 2789999985433221 134
Q ss_pred hccCCcEEEEEEECCCcc
Q 019959 103 LYSQINGVIFVHDLSQRR 120 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~ 120 (333)
....+|.++++.+.....
T Consensus 55 ~~~~~~~vi~v~~~~~~~ 72 (99)
T cd01983 55 ALLAADLVIIVTTPEALA 72 (99)
T ss_pred hhhhCCEEEEecCCchhh
Confidence 466899999999887543
No 436
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=95.73 E-value=0.038 Score=49.20 Aligned_cols=130 Identities=15% Similarity=0.248 Sum_probs=73.3
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCC----------cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQ----------RRTKTSLQKWAVEIATSGTFSAPLASGGPGGL 150 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~----------~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 150 (333)
..+.+.+.|++|+..-+..|..++.+.-.+++++.++. ....++-...+..|...--| .
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF-----------~ 265 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF-----------Q 265 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccc-----------c
Confidence 34557799999987766666666666666665554432 22233333455555554222 3
Q ss_pred CCcEEEEeeCcCCCCcc--------------CCccCcccHHHHHHHHHHHc--CCCCCCcCCCccccCCCCCceeeeecc
Q 019959 151 PVPYVVIGNKADVAAKE--------------GTRGSSGNLVDAARQWVEKQ--GLLPSSEELPLTESFPGGGGLIAAAKE 214 (333)
Q Consensus 151 ~~PiivVgNK~Dl~~~~--------------~r~v~~~~~~~~~~~~~~~~--~~~~~~~~~p~~E~~~~~~~~~~SAk~ 214 (333)
+.++|+..||.||.++. +...+ .+.+++|.-+. .+.+-..++-| ++| ++|..
T Consensus 266 nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qD----a~AAreFILkm~~d~nPd~dKii~-------SHf-TcATD 333 (359)
T KOG0085|consen 266 NSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQD----AQAAREFILKMYVDMNPDSDKIIY-------SHF-TCATD 333 (359)
T ss_pred CCceEEEechhhhhhhhhhHHHHHHhCcccCCCccc----HHHHHHHHHHHHHhhCCCccceee-------eee-eeccc
Confidence 77899999999986542 11111 24455554332 12111111111 111 67777
Q ss_pred CcCHHHHHHHHHHHHHHHH
Q 019959 215 ARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 215 g~~v~~~~~~l~~~l~~~~ 233 (333)
-.|+.-+|..+-..++...
T Consensus 334 T~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 334 TENIRFVFAAVKDTILQLN 352 (359)
T ss_pred chhHHHHHHHHHHHHHHhh
Confidence 7788888888877776643
No 437
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.69 E-value=0.095 Score=50.51 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
--|+|+|+.||||||++..+..
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999873
No 438
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.68 E-value=0.011 Score=47.03 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSS 46 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~ 46 (333)
.++|+|++|+|||+++..++..-.
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccC
Confidence 789999999999999999986643
No 439
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.66 E-value=0.012 Score=42.40 Aligned_cols=21 Identities=24% Similarity=0.572 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|++.|.+|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999854
No 440
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.63 E-value=0.027 Score=48.28 Aligned_cols=43 Identities=19% Similarity=0.115 Sum_probs=28.8
Q ss_pred cEEEEEEECCCcccHH--HHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 108 NGVIFVHDLSQRRTKT--SLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 108 d~vIlV~D~s~~~S~~--~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
|+|++|+|+.++.+.. .+...+. +.. .+.|+|+|.||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~-l~~---------------~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVL-QAG---------------GNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHH-hcc---------------CCCCEEEEEehhhcCCH
Confidence 7899999998864422 2222221 211 25799999999999764
No 441
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.63 E-value=0.01 Score=48.84 Aligned_cols=21 Identities=33% Similarity=0.730 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999854
No 442
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.60 E-value=0.019 Score=56.43 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.6
Q ss_pred ceEEEEECCCCCCHHHHHHHHH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
...|+++|.+|+||||++..|.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4579999999999999998886
No 443
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.54 E-value=0.015 Score=51.33 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
.|+|||++|+|||||++.+-.-+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 68999999999999999987553
No 444
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.54 E-value=0.0066 Score=57.84 Aligned_cols=86 Identities=23% Similarity=0.207 Sum_probs=51.7
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
.+-..+|-|.+||.+||||||+||.|-......- .|-.|.+-....+.+ .-.+-|+|+||.--
T Consensus 302 h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGETKVWQYItL----------------mkrIfLIDcPGvVy 364 (572)
T KOG2423|consen 302 HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGETKVWQYITL----------------MKRIFLIDCPGVVY 364 (572)
T ss_pred ccCccceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCcchHHHHHHH----------------HhceeEecCCCccC
Confidence 3456678999999999999999999987765321 122232221222222 12377889999321
Q ss_pred h--hhhHHhhccCCcEEEEEEECCCccc
Q 019959 96 Y--KDCRSILYSQINGVIFVHDLSQRRT 121 (333)
Q Consensus 96 ~--~~~~~~~~~~ad~vIlV~D~s~~~S 121 (333)
- .+.....+ .+||-|=.+++++.
T Consensus 365 ps~dset~ivL---kGvVRVenv~~pe~ 389 (572)
T KOG2423|consen 365 PSSDSETDIVL---KGVVRVENVKNPED 389 (572)
T ss_pred CCCCchHHHHh---hceeeeeecCCHHH
Confidence 1 11222223 36778888888764
No 445
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=95.53 E-value=0.089 Score=48.94 Aligned_cols=74 Identities=23% Similarity=0.169 Sum_probs=45.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
.|+|.|.+|+||||+++.|-.. |. ..+|....+.+..+...
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~~~----------g~-----------------------------~~~d~~~~~L~~~l~~~ 48 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALEDL----------GY-----------------------------YCVDNLPPSLLPKLVEL 48 (288)
T ss_pred EEEEECCCCCcHHHHHHHHHHc----------CC-----------------------------eEECCcCHHHHHHHHHH
Confidence 6899999999999999999422 11 11122222223333332
Q ss_pred hccC--CcEEEEEEECCCcccHHHHHHHHHHHHhc
Q 019959 103 LYSQ--INGVIFVHDLSQRRTKTSLQKWAVEIATS 135 (333)
Q Consensus 103 ~~~~--ad~vIlV~D~s~~~S~~~l~~~~~~i~~~ 135 (333)
.... .+.+.++.|+.+...+..+..++..+...
T Consensus 49 ~~~~~~~~~~av~iD~r~~~~~~~~~~~~~~L~~~ 83 (288)
T PRK05416 49 LAQSGGIRKVAVVIDVRSRPFFDDLPEALDELRER 83 (288)
T ss_pred HHhcCCCCCeEEEEccCchhhHHHHHHHHHHHHHc
Confidence 2222 45688888998776455666777777665
No 446
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.51 E-value=0.012 Score=50.73 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSS 46 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~ 46 (333)
+|+|+|++|+|||||+|-+.+-..
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC
Confidence 799999999999999999876543
No 447
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.49 E-value=0.012 Score=50.98 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999754
No 448
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.47 E-value=0.012 Score=47.00 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+|.|++|+|||+|++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999865
No 449
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.47 E-value=0.012 Score=46.29 Aligned_cols=20 Identities=50% Similarity=0.823 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
.++|+|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 68999999999999999986
No 450
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.42 E-value=0.012 Score=50.28 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 451
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.38 E-value=0.015 Score=50.15 Aligned_cols=20 Identities=50% Similarity=0.607 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
.++|+|+.|+|||||++.++
T Consensus 23 ~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 79999999999999999886
No 452
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.37 E-value=0.013 Score=55.57 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHcCC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~~ 45 (333)
++++|++|||||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998653
No 453
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.36 E-value=0.016 Score=50.95 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.6
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
...-|+|+|.+|+|||||++.+.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999854
No 454
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.35 E-value=0.014 Score=49.89 Aligned_cols=22 Identities=36% Similarity=0.723 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|++|+|||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999999864
No 455
>PRK06217 hypothetical protein; Validated
Probab=95.32 E-value=0.016 Score=49.95 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.+|+|+|.+|+|||||..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999854
No 456
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.31 E-value=0.013 Score=48.55 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|..|+|||||+..|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999854
No 457
>PHA00729 NTP-binding motif containing protein
Probab=95.27 E-value=0.02 Score=51.21 Aligned_cols=40 Identities=25% Similarity=0.476 Sum_probs=27.8
Q ss_pred CchhhhhhhhhccCCCCCCcceEEEEECCCCCCHHHHHHHHHcC
Q 019959 1 MFWKERERENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
|.|--+..-+.=..+. ...|+|.|.+|||||+|..++...
T Consensus 1 ~~~~~k~~~~~l~~~~----f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 1 MLWLAKKIVSAYNNNG----FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CchHHHHHHHHHhcCC----eEEEEEECCCCCCHHHHHHHHHHH
Confidence 6676555433222222 248999999999999999998753
No 458
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.24 E-value=0.015 Score=46.31 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+|.|.+|||||||++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999754
No 459
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.24 E-value=0.014 Score=47.61 Aligned_cols=21 Identities=43% Similarity=0.620 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+++|++|+|||+|++.+...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999744
No 460
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.22 E-value=0.015 Score=52.91 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-++|+|+.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999999985
No 461
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.18 E-value=0.021 Score=50.32 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=20.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
..-|+|+|++|||||||+++|...
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHhc
Confidence 346889999999999999999754
No 462
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.17 E-value=0.018 Score=50.92 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 6899999999999999999865
No 463
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.13 E-value=0.026 Score=51.64 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=25.0
Q ss_pred ccCCCCCCcceEEEEECCCCCCHHHHHHHHHc
Q 019959 12 ELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 12 ~~~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
+....+......++|.|++|+|||++...+..
T Consensus 33 ~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 33 EEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 33344455567899999999999999998864
No 464
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.11 E-value=0.018 Score=51.56 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-|+|||++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 599999999999999999875
No 465
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.08 E-value=0.02 Score=50.64 Aligned_cols=22 Identities=41% Similarity=0.703 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999875
No 466
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.06 E-value=0.018 Score=50.15 Aligned_cols=22 Identities=55% Similarity=0.729 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+++|++|||||||+|-+.+-
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcC
Confidence 5899999999999999988754
No 467
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.06 E-value=0.024 Score=49.88 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.1
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
..+.|+|.|.+|||||||++.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999864
No 468
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.04 E-value=0.021 Score=50.25 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
No 469
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.04 E-value=0.02 Score=49.75 Aligned_cols=22 Identities=14% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
=|+|+|++|||||||+++|+..
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999864
No 470
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.04 E-value=0.021 Score=49.43 Aligned_cols=22 Identities=36% Similarity=0.674 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||||++.+++-
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7999999999999999999854
No 471
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.00 E-value=0.021 Score=49.99 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999875
No 472
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.99 E-value=0.02 Score=49.52 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999865
No 473
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.98 E-value=0.022 Score=51.08 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999865
No 474
>PRK14530 adenylate kinase; Provisional
Probab=94.97 E-value=0.022 Score=50.46 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
+|+|+|.+|+||||+.+.|..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999973
No 475
>PRK03839 putative kinase; Provisional
Probab=94.97 E-value=0.022 Score=48.82 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+|+|+|.+|+||||+..++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999754
No 476
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.95 E-value=0.02 Score=49.86 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|.|+|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999754
No 477
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.94 E-value=0.021 Score=50.23 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999865
No 478
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.94 E-value=0.022 Score=51.19 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999865
No 479
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.94 E-value=0.024 Score=48.42 Aligned_cols=21 Identities=33% Similarity=0.806 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
+|.|-|++|+|||||+.+++.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 689999999999999999884
No 480
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.93 E-value=0.021 Score=48.98 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-+.|+|.+|+|||||+.+++..
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHH
Confidence 6899999999999999999854
No 481
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.92 E-value=0.023 Score=50.31 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999865
No 482
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.91 E-value=0.022 Score=49.14 Aligned_cols=23 Identities=35% Similarity=0.693 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
=++|.|++|||||||+++|+...
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999999664
No 483
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.91 E-value=0.024 Score=49.60 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
No 484
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.91 E-value=0.022 Score=48.82 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|.+|||||||++++..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999984
No 485
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.90 E-value=0.02 Score=48.75 Aligned_cols=21 Identities=43% Similarity=0.786 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-++|.|++|+|||+|++++..
T Consensus 26 ~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 26 NLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp -EEE-B-TTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 486
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.89 E-value=0.024 Score=49.88 Aligned_cols=22 Identities=50% Similarity=0.771 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
No 487
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=94.89 E-value=0.023 Score=51.30 Aligned_cols=25 Identities=32% Similarity=0.631 Sum_probs=21.8
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
..++++|+|.+|+|||+|+..++..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3479999999999999999998854
No 488
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.89 E-value=0.022 Score=49.82 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|+|++|+|||||++.+.+.
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6999999999999999999864
No 489
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.88 E-value=0.025 Score=49.24 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
.++|+|+.|+|||||++.+++..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998763
No 490
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.87 E-value=0.024 Score=49.90 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999865
No 491
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.87 E-value=0.025 Score=49.80 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999875
No 492
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.87 E-value=0.025 Score=49.72 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999975
No 493
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.85 E-value=0.025 Score=49.83 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999865
No 494
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.84 E-value=0.022 Score=45.74 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|.|++|+|||++++++...
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999854
No 495
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.83 E-value=0.025 Score=50.14 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999998865
No 496
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.82 E-value=0.026 Score=50.02 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999876
No 497
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=94.81 E-value=0.14 Score=50.31 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=40.3
Q ss_pred EEEeCC-CchhhhhhHHhhccCCcEEEEEEE-CCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 86 ELWDIS-GHERYKDCRSILYSQINGVIFVHD-LSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 86 ~i~Dt~-G~e~~~~~~~~~~~~ad~vIlV~D-~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
.+.|.+ |......+....|++++++|| | .|.--+..+++.++..+..... ...-||+|-.|.+
T Consensus 137 ~V~dLsVG~qQRVEIlKaLyr~a~iLIL--DEPTaVLTP~E~~~lf~~l~~l~~------------~G~tIi~ITHKL~ 201 (501)
T COG3845 137 KVADLSVGEQQRVEILKALYRGARLLIL--DEPTAVLTPQEADELFEILRRLAA------------EGKTIIFITHKLK 201 (501)
T ss_pred eeecCCcchhHHHHHHHHHhcCCCEEEE--cCCcccCCHHHHHHHHHHHHHHHH------------CCCEEEEEeccHH
Confidence 355554 444445667778999998876 4 3444467777776666655432 3567888888865
No 498
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.79 E-value=0.024 Score=50.14 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999975
No 499
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.77 E-value=0.027 Score=49.94 Aligned_cols=22 Identities=41% Similarity=0.594 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999865
No 500
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.77 E-value=0.028 Score=48.17 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999865
Done!