Query 019959
Match_columns 333
No_of_seqs 340 out of 2459
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 09:40:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019959.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019959hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 6.1E-37 2.1E-41 271.8 16.8 170 15-231 7-176 (216)
2 2hup_A RAS-related protein RAB 100.0 1.2E-30 4.2E-35 227.7 18.8 169 18-232 26-194 (201)
3 2ew1_A RAS-related protein RAB 100.0 2.2E-30 7.4E-35 226.7 20.0 169 18-233 23-191 (201)
4 2fu5_C RAS-related protein RAB 100.0 7.5E-31 2.6E-35 224.3 15.5 169 19-234 6-174 (183)
5 3q3j_B RHO-related GTP-binding 100.0 1.5E-30 5E-35 229.7 17.2 173 14-232 20-204 (214)
6 2a5j_A RAS-related protein RAB 100.0 3.4E-30 1.2E-34 222.5 18.5 170 17-233 17-186 (191)
7 3ihw_A Centg3; RAS, centaurin, 100.0 4.9E-30 1.7E-34 221.0 19.4 169 14-232 13-181 (184)
8 1z08_A RAS-related protein RAB 100.0 2.7E-30 9.4E-35 217.5 16.8 165 19-230 4-168 (170)
9 3kkq_A RAS-related protein M-R 100.0 6.1E-30 2.1E-34 218.6 19.2 169 16-231 13-182 (183)
10 1z0f_A RAB14, member RAS oncog 100.0 5.3E-30 1.8E-34 217.3 18.7 167 18-231 12-178 (179)
11 1zbd_A Rabphilin-3A; G protein 100.0 1.4E-29 4.8E-34 220.3 21.8 169 19-234 6-174 (203)
12 3tw8_B RAS-related protein RAB 100.0 5.9E-30 2E-34 217.4 18.9 169 18-234 6-174 (181)
13 1r2q_A RAS-related protein RAB 100.0 4.7E-30 1.6E-34 215.6 17.9 164 19-229 4-167 (170)
14 3tkl_A RAS-related protein RAB 100.0 1.1E-29 3.9E-34 219.1 20.7 169 18-233 13-181 (196)
15 2bme_A RAB4A, RAS-related prot 100.0 1.1E-29 3.7E-34 217.4 20.1 170 18-234 7-176 (186)
16 2gf9_A RAS-related protein RAB 100.0 1E-29 3.6E-34 218.9 19.9 168 18-232 19-186 (189)
17 3reg_A RHO-like small GTPase; 100.0 7.1E-30 2.4E-34 220.8 18.6 169 18-232 20-189 (194)
18 3t5g_A GTP-binding protein RHE 100.0 3.9E-30 1.3E-34 219.5 16.7 168 18-232 3-170 (181)
19 2il1_A RAB12; G-protein, GDP, 100.0 4.4E-30 1.5E-34 222.3 17.2 172 15-232 20-191 (192)
20 3cbq_A GTP-binding protein REM 100.0 3.3E-30 1.1E-34 224.2 16.4 171 15-231 17-188 (195)
21 3dz8_A RAS-related protein RAB 100.0 1.4E-30 4.8E-35 224.9 13.9 169 17-232 19-187 (191)
22 2efe_B Small GTP-binding prote 100.0 1.2E-29 4E-34 216.0 19.2 168 16-230 7-174 (181)
23 2oil_A CATX-8, RAS-related pro 100.0 1.3E-29 4.6E-34 218.7 19.3 169 18-233 22-190 (193)
24 3c5c_A RAS-like protein 12; GD 100.0 5.2E-30 1.8E-34 221.1 16.5 167 18-230 18-185 (187)
25 2iwr_A Centaurin gamma 1; ANK 100.0 1.6E-29 5.5E-34 215.1 19.0 168 19-234 5-172 (178)
26 2bcg_Y Protein YP2, GTP-bindin 100.0 1.9E-29 6.5E-34 220.2 19.7 168 19-233 6-173 (206)
27 1z0j_A RAB-22, RAS-related pro 100.0 2E-29 6.7E-34 212.0 19.1 164 19-229 4-167 (170)
28 1z2a_A RAS-related protein RAB 100.0 7.3E-30 2.5E-34 214.2 16.2 164 19-230 3-166 (168)
29 3q85_A GTP-binding protein REM 100.0 9.6E-30 3.3E-34 214.2 16.9 166 21-232 2-168 (169)
30 3bc1_A RAS-related protein RAB 100.0 4E-29 1.4E-33 214.5 21.1 180 17-233 7-187 (195)
31 1z06_A RAS-related protein RAB 100.0 1.6E-29 5.5E-34 217.7 18.5 170 15-230 14-187 (189)
32 1g16_A RAS-related protein SEC 100.0 1.3E-29 4.4E-34 213.1 17.4 165 20-232 2-166 (170)
33 2hxs_A RAB-26, RAS-related pro 100.0 4.8E-30 1.6E-34 217.9 14.8 170 18-231 3-173 (178)
34 1ek0_A Protein (GTP-binding pr 100.0 2E-29 6.7E-34 211.8 18.4 165 20-229 2-167 (170)
35 2g6b_A RAS-related protein RAB 100.0 3.3E-29 1.1E-33 213.1 19.5 168 18-232 7-175 (180)
36 1m7b_A RND3/RHOE small GTP-bin 100.0 1.3E-29 4.5E-34 217.5 17.0 168 18-231 4-183 (184)
37 2nzj_A GTP-binding protein REM 100.0 4.2E-29 1.4E-33 211.2 19.8 167 20-233 3-171 (175)
38 2o52_A RAS-related protein RAB 100.0 1.1E-29 3.7E-34 221.4 16.7 169 19-234 23-191 (200)
39 2p5s_A RAS and EF-hand domain 100.0 8.6E-30 3E-34 221.5 15.9 171 15-230 22-196 (199)
40 2atx_A Small GTP binding prote 100.0 3.3E-29 1.1E-33 216.4 19.2 171 14-230 11-192 (194)
41 2fn4_A P23, RAS-related protei 100.0 2.5E-29 8.7E-34 213.5 18.1 169 17-232 5-173 (181)
42 2fg5_A RAB-22B, RAS-related pr 100.0 2E-29 7E-34 217.9 17.4 164 19-229 21-184 (192)
43 1wms_A RAB-9, RAB9, RAS-relate 100.0 5.6E-29 1.9E-33 211.1 19.7 171 18-231 4-174 (177)
44 3oes_A GTPase rhebl1; small GT 100.0 1.1E-29 3.7E-34 221.2 15.5 173 13-232 16-188 (201)
45 2g3y_A GTP-binding protein GEM 100.0 4.5E-29 1.5E-33 220.4 19.4 168 18-232 34-204 (211)
46 1ky3_A GTP-binding protein YPT 100.0 3.7E-29 1.3E-33 212.6 18.0 176 18-233 5-180 (182)
47 2y8e_A RAB-protein 6, GH09086P 100.0 1.7E-29 5.7E-34 214.2 15.5 165 18-229 11-175 (179)
48 3q72_A GTP-binding protein RAD 100.0 4.4E-29 1.5E-33 209.5 17.7 164 21-232 2-165 (166)
49 3cpj_B GTP-binding protein YPT 100.0 1.9E-29 6.5E-34 223.5 16.2 168 18-232 10-177 (223)
50 3clv_A RAB5 protein, putative; 100.0 1.4E-28 4.7E-33 212.5 21.0 177 19-232 5-205 (208)
51 3cph_A RAS-related protein SEC 100.0 1.1E-28 3.6E-33 216.0 20.3 172 15-234 14-185 (213)
52 1c1y_A RAS-related protein RAP 100.0 5.1E-29 1.7E-33 208.9 17.5 164 20-229 2-165 (167)
53 1kao_A RAP2A; GTP-binding prot 100.0 8.3E-29 2.8E-33 207.1 18.6 164 20-230 2-165 (167)
54 2f7s_A C25KG, RAS-related prot 100.0 3.2E-29 1.1E-33 220.5 16.7 181 18-234 22-202 (217)
55 2bov_A RAla, RAS-related prote 100.0 1.3E-28 4.5E-33 214.0 20.3 173 15-234 8-180 (206)
56 1gwn_A RHO-related GTP-binding 100.0 4.7E-29 1.6E-33 218.7 17.4 167 19-231 26-204 (205)
57 2q3h_A RAS homolog gene family 100.0 6.5E-29 2.2E-33 215.8 18.1 173 15-233 14-197 (201)
58 2a9k_A RAS-related protein RAL 100.0 1.1E-28 3.7E-33 210.7 19.0 171 17-234 14-184 (187)
59 1u8z_A RAS-related protein RAL 100.0 8.2E-29 2.8E-33 207.3 17.8 164 20-230 3-166 (168)
60 1x3s_A RAS-related protein RAB 100.0 8.8E-29 3E-33 213.1 18.2 168 18-232 12-179 (195)
61 2atv_A RERG, RAS-like estrogen 100.0 1.7E-28 5.7E-33 212.7 18.1 168 18-233 25-193 (196)
62 2yc2_C IFT27, small RAB-relate 100.0 4.4E-29 1.5E-33 217.1 14.1 171 19-233 18-194 (208)
63 1vg8_A RAS-related protein RAB 100.0 2.8E-28 9.6E-33 212.3 18.3 173 19-234 6-178 (207)
64 1mh1_A RAC1; GTP-binding, GTPa 100.0 2.3E-28 7.7E-33 208.7 17.2 166 19-230 3-179 (186)
65 2gco_A H9, RHO-related GTP-bin 100.0 2.7E-28 9.1E-33 212.6 17.9 170 15-230 19-199 (201)
66 4dsu_A GTPase KRAS, isoform 2B 100.0 6.9E-28 2.4E-32 206.2 20.1 168 19-234 2-169 (189)
67 2j0v_A RAC-like GTP-binding pr 100.0 1.5E-28 5E-33 215.5 15.8 168 19-232 7-181 (212)
68 2cjw_A GTP-binding protein GEM 100.0 4.3E-28 1.5E-32 210.2 18.5 166 20-232 5-173 (192)
69 3t1o_A Gliding protein MGLA; G 100.0 6.6E-29 2.3E-33 213.9 13.2 167 17-233 10-194 (198)
70 2j1l_A RHO-related GTP-binding 100.0 2.7E-28 9.3E-33 214.9 17.0 168 19-232 32-210 (214)
71 3bwd_D RAC-like GTP-binding pr 100.0 5.7E-29 1.9E-33 212.0 10.7 166 19-230 6-180 (182)
72 2fv8_A H6, RHO-related GTP-bin 100.0 5E-28 1.7E-32 211.8 15.9 169 19-233 23-202 (207)
73 3con_A GTPase NRAS; structural 100.0 2.2E-27 7.4E-32 204.1 19.5 169 17-233 17-185 (190)
74 3l0i_B RAS-related protein RAB 100.0 5.4E-30 1.9E-34 222.8 3.1 164 19-229 31-194 (199)
75 4bas_A ADP-ribosylation factor 100.0 7.2E-28 2.5E-32 208.2 16.4 178 14-232 10-190 (199)
76 3gj0_A GTP-binding nuclear pro 100.0 7.6E-29 2.6E-33 219.0 10.0 169 14-232 8-176 (221)
77 4gzl_A RAS-related C3 botulinu 100.0 4.6E-28 1.6E-32 211.8 14.7 166 18-229 27-203 (204)
78 2erx_A GTP-binding protein DI- 100.0 8.4E-28 2.9E-32 202.1 15.7 164 20-229 2-165 (172)
79 2ce2_X GTPase HRAS; signaling 100.0 2.5E-27 8.7E-32 197.6 18.2 162 21-230 3-164 (166)
80 1r8s_A ADP-ribosylation factor 100.0 1.6E-27 5.3E-32 199.6 15.4 161 22-231 1-162 (164)
81 4djt_A GTP-binding nuclear pro 100.0 3.8E-28 1.3E-32 213.7 12.1 169 18-232 8-176 (218)
82 1zd9_A ADP-ribosylation factor 99.9 2.5E-27 8.7E-32 204.1 15.4 164 18-229 19-183 (188)
83 1upt_A ARL1, ADP-ribosylation 99.9 7.5E-27 2.6E-31 196.6 17.2 165 18-231 4-169 (171)
84 2gf0_A GTP-binding protein DI- 99.9 5E-27 1.7E-31 202.9 16.4 165 19-230 6-170 (199)
85 1ksh_A ARF-like protein 2; sma 99.9 6.8E-27 2.3E-31 200.3 16.7 165 19-232 16-181 (186)
86 1fzq_A ADP-ribosylation factor 99.9 4.3E-27 1.5E-31 201.7 14.4 165 18-231 13-178 (181)
87 2zej_A Dardarin, leucine-rich 99.9 7.4E-28 2.5E-32 206.9 8.8 172 21-230 2-177 (184)
88 2b6h_A ADP-ribosylation factor 99.9 3.5E-27 1.2E-31 204.3 13.0 163 18-229 26-189 (192)
89 1zj6_A ADP-ribosylation factor 99.9 1.1E-26 3.7E-31 199.6 15.2 163 19-229 14-176 (187)
90 2h17_A ADP-ribosylation factor 99.9 5.4E-27 1.9E-31 200.6 12.9 167 13-228 13-180 (181)
91 1f6b_A SAR1; gtpases, N-termin 99.9 4.8E-27 1.6E-31 204.5 12.4 164 19-228 23-196 (198)
92 3llu_A RAS-related GTP-binding 99.9 2.2E-27 7.6E-32 205.9 10.0 173 14-229 13-195 (196)
93 2f9l_A RAB11B, member RAS onco 99.9 5.4E-26 1.9E-30 197.6 18.6 167 20-233 4-170 (199)
94 2h57_A ADP-ribosylation factor 99.9 1.7E-26 5.8E-31 198.9 14.9 167 18-229 18-185 (190)
95 1m2o_B GTP-binding protein SAR 99.9 2.8E-26 9.7E-31 198.2 16.3 163 19-227 21-188 (190)
96 1moz_A ARL1, ADP-ribosylation 99.9 1.3E-26 4.5E-31 197.6 13.2 165 19-232 16-181 (183)
97 2x77_A ADP-ribosylation factor 99.9 2.1E-26 7.2E-31 197.9 12.5 165 19-232 20-185 (189)
98 2wkq_A NPH1-1, RAS-related C3 99.9 9.7E-26 3.3E-30 210.3 16.9 167 19-231 153-330 (332)
99 3th5_A RAS-related C3 botulinu 99.9 3.7E-28 1.3E-32 211.8 0.0 166 18-229 27-203 (204)
100 2wji_A Ferrous iron transport 99.9 7.9E-26 2.7E-30 190.8 14.3 153 21-229 3-163 (165)
101 1oix_A RAS-related protein RAB 99.9 3.6E-25 1.2E-29 191.5 17.2 164 19-229 27-190 (191)
102 3c5h_A Glucocorticoid receptor 99.9 2.1E-26 7.2E-31 208.8 7.0 180 15-229 13-253 (255)
103 2lkc_A Translation initiation 99.9 5.8E-25 2E-29 186.4 15.3 167 18-233 5-173 (178)
104 3r7w_A Gtpase1, GTP-binding pr 99.9 2.4E-25 8.1E-30 207.3 13.2 167 20-229 2-179 (307)
105 3o47_A ADP-ribosylation factor 99.9 3.4E-25 1.1E-29 208.2 12.5 163 19-230 163-326 (329)
106 2wjg_A FEOB, ferrous iron tran 99.9 6.4E-25 2.2E-29 188.1 12.8 159 16-230 2-168 (188)
107 2fh5_B SR-beta, signal recogni 99.9 1.7E-24 6E-29 189.7 15.7 123 19-166 5-130 (214)
108 3r7w_B Gtpase2, GTP-binding pr 99.9 5.3E-26 1.8E-30 211.8 4.2 161 23-231 1-174 (331)
109 2qu8_A Putative nucleolar GTP- 99.9 1.7E-23 5.7E-28 185.9 18.3 169 19-233 27-207 (228)
110 3lvq_E ARF-GAP with SH3 domain 99.9 7E-24 2.4E-28 209.6 16.6 163 19-230 320-483 (497)
111 1svi_A GTP-binding protein YSX 99.9 2.3E-23 8E-28 179.4 16.3 163 16-229 18-193 (195)
112 3pqc_A Probable GTP-binding pr 99.9 3E-23 1E-27 178.1 15.5 163 14-230 16-193 (195)
113 3dpu_A RAB family protein; roc 99.9 2.9E-24 9.9E-29 214.4 10.5 171 17-231 37-208 (535)
114 2dyk_A GTP-binding protein; GT 99.9 2.1E-23 7.3E-28 173.6 13.8 150 22-228 2-159 (161)
115 2cxx_A Probable GTP-binding pr 99.9 9.3E-24 3.2E-28 180.8 11.2 163 22-232 2-185 (190)
116 2gj8_A MNME, tRNA modification 99.9 2.8E-24 9.5E-29 182.9 7.2 152 21-229 4-164 (172)
117 3a1s_A Iron(II) transport prot 99.9 2.2E-23 7.4E-28 189.4 12.5 155 19-229 3-165 (258)
118 3b1v_A Ferrous iron uptake tra 99.9 5.9E-23 2E-27 187.9 11.9 151 21-228 3-161 (272)
119 3iby_A Ferrous iron transport 99.9 5.4E-23 1.8E-27 186.6 9.9 150 23-228 3-164 (256)
120 3i8s_A Ferrous iron transport 99.9 6.2E-23 2.1E-27 188.0 9.0 152 20-227 2-165 (274)
121 3iev_A GTP-binding protein ERA 99.9 1.7E-21 6E-26 181.3 18.3 165 16-229 5-180 (308)
122 4dhe_A Probable GTP-binding pr 99.9 4.8E-22 1.6E-26 175.0 11.7 175 16-231 24-211 (223)
123 1nrj_B SR-beta, signal recogni 99.9 1.9E-22 6.7E-27 177.1 8.9 154 18-217 9-170 (218)
124 3k53_A Ferrous iron transport 99.9 1.5E-21 5E-26 178.3 13.5 155 20-229 2-164 (271)
125 2hjg_A GTP-binding protein ENG 99.9 9.7E-22 3.3E-26 191.4 11.5 165 19-231 173-349 (436)
126 1wf3_A GTP-binding protein; GT 99.8 3.7E-20 1.3E-24 171.7 17.0 155 19-227 5-169 (301)
127 2e87_A Hypothetical protein PH 99.8 9E-20 3.1E-24 173.0 19.6 161 19-231 165-336 (357)
128 3gee_A MNME, tRNA modification 99.8 1.7E-20 5.9E-25 184.0 14.5 156 21-230 233-397 (476)
129 4dcu_A GTP-binding protein ENG 99.8 8.4E-21 2.9E-25 185.8 11.8 167 18-232 192-370 (456)
130 1lnz_A SPO0B-associated GTP-bi 99.8 1.3E-20 4.6E-25 177.5 12.2 157 23-229 160-328 (342)
131 1mky_A Probable GTP-binding pr 99.8 4.4E-20 1.5E-24 179.9 15.3 151 23-231 3-166 (439)
132 3qq5_A Small GTP-binding prote 99.8 4E-21 1.4E-25 185.8 7.3 161 13-229 26-194 (423)
133 3j2k_7 ERF3, eukaryotic polype 99.8 1.6E-19 5.6E-24 175.8 15.8 169 15-223 11-217 (439)
134 2ged_A SR-beta, signal recogni 99.8 5.4E-20 1.9E-24 158.1 9.0 121 16-166 43-171 (193)
135 3sjy_A Translation initiation 99.8 7.1E-19 2.4E-23 169.5 17.8 175 18-229 5-190 (403)
136 1xzp_A Probable tRNA modificat 99.8 1E-19 3.5E-24 178.8 11.7 152 22-231 244-405 (482)
137 2qtf_A Protein HFLX, GTP-bindi 99.8 9.3E-19 3.2E-23 166.3 16.3 166 23-234 181-357 (364)
138 1s0u_A EIF-2-gamma, translatio 99.8 2E-18 6.7E-23 166.6 18.5 174 19-228 6-195 (408)
139 1wb1_A Translation elongation 99.8 3.9E-19 1.3E-23 175.0 13.7 163 17-230 15-188 (482)
140 2xtp_A GTPase IMAP family memb 99.8 1.7E-18 6E-23 156.5 16.5 172 17-232 18-209 (260)
141 2hjg_A GTP-binding protein ENG 99.8 7.5E-20 2.6E-24 178.1 7.8 152 22-229 4-163 (436)
142 2xtz_A Guanine nucleotide-bind 99.8 5.2E-19 1.8E-23 167.3 13.1 134 81-234 181-348 (354)
143 3p26_A Elongation factor 1 alp 99.8 4.7E-19 1.6E-23 174.6 13.3 159 20-220 32-227 (483)
144 3geh_A MNME, tRNA modification 99.8 2.4E-19 8.4E-24 175.3 11.1 151 21-230 224-383 (462)
145 3izy_P Translation initiation 99.8 1.6E-20 5.3E-25 186.3 2.0 162 20-229 3-166 (537)
146 3lxx_A GTPase IMAP family memb 99.8 5.6E-18 1.9E-22 151.4 17.7 145 16-189 24-183 (239)
147 1cip_A Protein (guanine nucleo 99.8 4.8E-19 1.6E-23 167.5 10.9 129 82-234 192-347 (353)
148 3cb4_D GTP-binding protein LEP 99.8 2.3E-18 8E-23 173.0 16.2 162 21-229 4-180 (599)
149 2ywe_A GTP-binding protein LEP 99.8 3.2E-18 1.1E-22 171.8 17.1 163 20-229 5-182 (600)
150 1mky_A Probable GTP-binding pr 99.8 2.5E-18 8.7E-23 167.4 15.0 164 20-231 179-355 (439)
151 3ohm_A Guanine nucleotide-bind 99.8 1.8E-18 6.2E-23 161.6 12.0 129 82-234 166-321 (327)
152 2c78_A Elongation factor TU-A; 99.8 1.6E-18 5.5E-23 167.1 11.7 157 19-218 9-181 (405)
153 1d2e_A Elongation factor TU (E 99.8 3E-18 1E-22 164.8 13.4 155 20-217 2-171 (397)
154 1jny_A EF-1-alpha, elongation 99.8 8E-19 2.7E-23 170.8 9.5 169 20-223 5-205 (435)
155 1kk1_A EIF2gamma; initiation o 99.8 4.1E-18 1.4E-22 164.5 14.2 176 18-228 7-197 (410)
156 4fid_A G protein alpha subunit 99.8 2.8E-18 9.5E-23 160.9 12.5 135 81-236 159-332 (340)
157 3t5d_A Septin-7; GTP-binding p 99.8 1.9E-18 6.4E-23 158.0 10.6 159 20-227 7-200 (274)
158 1zun_B Sulfate adenylate trans 99.8 2.7E-18 9.3E-23 166.9 11.2 163 18-223 21-216 (434)
159 3lxw_A GTPase IMAP family memb 99.7 3.8E-18 1.3E-22 153.7 11.0 173 18-231 18-208 (247)
160 2qag_A Septin-2, protein NEDD5 99.7 6.7E-19 2.3E-23 167.3 5.8 164 20-233 36-235 (361)
161 2aka_B Dynamin-1; fusion prote 99.7 4.5E-18 1.5E-22 156.5 10.9 172 17-228 22-250 (299)
162 1pui_A ENGB, probable GTP-bind 99.7 5.6E-18 1.9E-22 147.5 10.9 161 17-229 22-197 (210)
163 3tr5_A RF-3, peptide chain rel 99.7 5.2E-18 1.8E-22 168.5 11.6 117 21-166 13-149 (528)
164 4dcu_A GTP-binding protein ENG 99.7 1.3E-18 4.6E-23 170.1 6.7 155 19-229 21-183 (456)
165 1ega_A Protein (GTP-binding pr 99.7 6.5E-18 2.2E-22 156.6 10.7 156 20-228 7-172 (301)
166 3izq_1 HBS1P, elongation facto 99.7 7.4E-18 2.5E-22 170.2 11.5 161 19-221 165-362 (611)
167 1f60_A Elongation factor EEF1A 99.7 4.4E-18 1.5E-22 166.5 7.3 159 20-221 6-202 (458)
168 1r5b_A Eukaryotic peptide chai 99.7 2.3E-18 7.9E-23 168.9 4.4 164 19-222 41-243 (467)
169 1g7s_A Translation initiation 99.7 1.9E-17 6.6E-22 166.4 10.5 182 20-230 4-217 (594)
170 1zo1_I IF2, translation initia 99.7 2E-18 6.9E-23 169.8 3.0 159 20-227 3-163 (501)
171 3avx_A Elongation factor TS, e 99.7 5.5E-17 1.9E-21 170.8 12.4 156 18-216 293-463 (1289)
172 2elf_A Protein translation elo 99.7 4.7E-17 1.6E-21 155.0 9.8 151 23-231 23-180 (370)
173 3def_A T7I23.11 protein; chlor 99.7 3.2E-16 1.1E-20 142.1 13.6 122 19-166 34-166 (262)
174 3mca_A HBS1, elongation factor 99.7 1E-17 3.5E-22 168.6 1.9 159 18-219 174-371 (592)
175 2dy1_A Elongation factor G; tr 99.7 4.4E-16 1.5E-20 158.8 12.8 131 20-188 8-154 (665)
176 2qnr_A Septin-2, protein NEDD5 99.7 7.8E-17 2.7E-21 149.3 6.4 163 19-231 16-214 (301)
177 1u0l_A Probable GTPase ENGC; p 99.6 7.5E-17 2.6E-21 149.4 4.9 135 36-226 32-168 (301)
178 1azs_C GS-alpha; complex (lyas 99.6 1.2E-15 4.2E-20 146.1 13.0 133 82-234 216-388 (402)
179 1dar_A EF-G, elongation factor 99.6 2.4E-15 8.2E-20 154.0 15.8 116 18-166 9-144 (691)
180 1zcb_A G alpha I/13; GTP-bindi 99.6 6.5E-16 2.2E-20 146.5 10.3 129 82-234 200-356 (362)
181 3t34_A Dynamin-related protein 99.6 4.1E-16 1.4E-20 147.9 8.7 117 84-236 137-266 (360)
182 1h65_A Chloroplast outer envel 99.6 1.5E-15 5.1E-20 138.3 11.3 123 19-166 37-169 (270)
183 2j69_A Bacterial dynamin-like 99.6 3.9E-15 1.3E-19 152.5 15.6 68 84-166 175-245 (695)
184 2h5e_A Peptide chain release f 99.6 1E-15 3.5E-20 152.1 8.9 133 20-189 12-164 (529)
185 2rdo_7 EF-G, elongation factor 99.6 2.3E-14 7.8E-19 147.0 18.6 125 18-166 7-149 (704)
186 2xex_A Elongation factor G; GT 99.6 1E-14 3.5E-19 149.3 16.0 119 17-166 6-142 (693)
187 1jwy_B Dynamin A GTPase domain 99.6 4.1E-15 1.4E-19 137.8 11.4 69 83-166 131-213 (315)
188 2x2e_A Dynamin-1; nitration, h 99.6 1.6E-15 5.5E-20 143.4 7.7 111 83-227 130-254 (353)
189 2qag_C Septin-7; cell cycle, c 99.6 4.2E-15 1.4E-19 143.3 9.9 160 19-227 29-223 (418)
190 1udx_A The GTP-binding protein 99.6 3.8E-14 1.3E-18 136.6 15.1 160 23-231 159-325 (416)
191 1wxq_A GTP-binding protein; st 99.6 1E-14 3.5E-19 140.0 10.6 98 22-119 1-114 (397)
192 1n0u_A EF-2, elongation factor 99.5 3.4E-14 1.2E-18 148.3 12.3 129 19-165 17-164 (842)
193 2qpt_A EH domain-containing pr 99.5 6.3E-14 2.2E-18 139.8 11.8 131 18-166 62-233 (550)
194 2wsm_A Hydrogenase expression/ 99.5 1.8E-14 6E-19 126.4 6.9 165 21-230 30-213 (221)
195 1jal_A YCHF protein; nucleotid 99.5 3E-13 1E-17 127.8 15.7 95 22-118 3-108 (363)
196 2hf9_A Probable hydrogenase ni 99.5 3.5E-16 1.2E-20 137.9 -4.7 168 20-230 37-223 (226)
197 2dby_A GTP-binding protein; GD 99.4 1.5E-12 5.2E-17 123.5 12.9 95 22-118 2-111 (368)
198 3p32_A Probable GTPase RV1496/ 99.4 1.7E-13 5.8E-18 129.7 4.6 111 82-231 171-284 (355)
199 4a9a_A Ribosome-interacting GT 99.3 7E-12 2.4E-16 119.1 13.3 119 19-164 70-195 (376)
200 3vqt_A RF-3, peptide chain rel 99.3 1.5E-11 5.1E-16 122.6 15.7 115 23-166 33-167 (548)
201 1yrb_A ATP(GTP)binding protein 99.3 7.7E-12 2.6E-16 112.4 12.1 114 83-229 109-255 (262)
202 2www_A Methylmalonic aciduria 99.3 5.1E-12 1.7E-16 119.3 11.4 109 82-229 166-277 (349)
203 3zvr_A Dynamin-1; hydrolase, D 99.3 1.8E-11 6.1E-16 125.4 12.5 109 85-228 152-275 (772)
204 2p67_A LAO/AO transport system 99.2 6.5E-12 2.2E-16 118.1 7.1 110 82-230 148-260 (341)
205 3j25_A Tetracycline resistance 99.2 1.9E-11 6.6E-16 124.0 9.0 115 23-166 4-134 (638)
206 2yv5_A YJEQ protein; hydrolase 99.2 1.2E-11 4.1E-16 114.4 6.7 110 81-226 48-164 (302)
207 2ohf_A Protein OLA1, GTP-bindi 99.1 6.4E-11 2.2E-15 113.0 7.6 103 18-122 19-132 (396)
208 4fn5_A EF-G 1, elongation fact 99.1 1.6E-09 5.6E-14 111.2 16.9 123 20-166 12-152 (709)
209 3l82_B F-box only protein 4; T 99.0 1.4E-10 4.7E-15 100.7 3.8 113 90-230 109-222 (227)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 2.8E-09 9.7E-14 101.7 12.4 99 18-118 17-127 (392)
211 2qm8_A GTPase/ATPase; G protei 98.9 1.7E-09 5.8E-14 101.4 9.0 110 82-229 147-259 (337)
212 3l2o_B F-box only protein 4; s 98.8 4E-09 1.4E-13 95.8 5.3 109 90-230 194-307 (312)
213 3h2y_A GTPase family protein; 98.7 1.6E-08 5.4E-13 95.9 7.9 102 92-227 55-156 (368)
214 3ec1_A YQEH GTPase; atnos1, at 98.6 5.7E-08 2E-12 92.1 6.9 103 91-227 56-158 (369)
215 2j37_W Signal recognition part 98.6 1.2E-07 4.1E-12 93.2 8.4 115 82-227 183-309 (504)
216 3ec1_A YQEH GTPase; atnos1, at 98.5 9.3E-09 3.2E-13 97.6 -1.0 127 22-189 163-305 (369)
217 2qag_B Septin-6, protein NEDD5 98.4 1.4E-06 4.7E-11 83.8 11.4 25 22-46 43-67 (427)
218 3h2y_A GTPase family protein; 98.4 7.6E-08 2.6E-12 91.2 1.2 129 22-189 161-304 (368)
219 1puj_A YLQF, conserved hypothe 98.3 7.4E-07 2.5E-11 81.3 7.3 100 87-230 3-105 (282)
220 3sop_A Neuronal-specific septi 98.3 2.5E-06 8.7E-11 77.3 10.6 24 21-44 2-25 (270)
221 1tq4_A IIGP1, interferon-induc 98.2 1.8E-05 6.1E-10 75.9 13.4 165 22-229 70-251 (413)
222 3cnl_A YLQF, putative uncharac 98.1 1.5E-06 5E-11 78.5 4.0 56 22-94 100-155 (262)
223 1puj_A YLQF, conserved hypothe 98.1 2.9E-06 9.8E-11 77.4 5.8 27 19-45 118-144 (282)
224 2v3c_C SRP54, signal recogniti 97.9 1.2E-05 4.3E-10 77.5 5.5 22 22-43 100-121 (432)
225 1f5n_A Interferon-induced guan 97.8 5.1E-05 1.8E-09 75.8 9.3 28 19-46 36-63 (592)
226 1bif_A 6-phosphofructo-2-kinas 97.8 4E-06 1.4E-10 81.8 0.3 102 19-135 37-148 (469)
227 3dm5_A SRP54, signal recogniti 97.7 0.00011 3.8E-09 70.8 9.2 22 21-42 100-121 (443)
228 3szr_A Interferon-induced GTP- 97.6 0.00025 8.6E-09 71.3 9.9 23 23-45 47-69 (608)
229 3cnl_A YLQF, putative uncharac 97.5 6.2E-05 2.1E-09 67.7 3.7 78 99-226 14-96 (262)
230 3kl4_A SRP54, signal recogniti 97.4 0.00011 3.9E-09 70.7 5.6 79 82-188 179-265 (433)
231 1t9h_A YLOQ, probable GTPase E 97.3 0.00014 4.7E-09 67.0 4.5 54 98-166 78-132 (307)
232 2rcn_A Probable GTPase ENGC; Y 97.2 0.0012 4E-08 62.0 9.0 85 103-224 127-212 (358)
233 1j8m_F SRP54, signal recogniti 97.2 0.00093 3.2E-08 61.1 7.9 78 82-188 180-266 (297)
234 4dzz_A Plasmid partitioning pr 97.0 0.002 6.9E-08 54.6 8.5 85 82-189 75-159 (206)
235 3q5d_A Atlastin-1; G protein, 96.6 0.0053 1.8E-07 59.2 8.5 25 19-43 65-89 (447)
236 1ye8_A Protein THEP1, hypothet 96.4 0.0017 5.8E-08 54.7 3.3 22 23-44 2-23 (178)
237 1kgd_A CASK, peripheral plasma 96.3 0.0018 6.2E-08 54.3 3.1 22 23-44 7-28 (180)
238 1lvg_A Guanylate kinase, GMP k 96.3 0.0021 7.2E-08 54.8 3.1 21 23-43 6-26 (198)
239 3ney_A 55 kDa erythrocyte memb 96.2 0.0033 1.1E-07 53.9 3.7 25 20-44 18-42 (197)
240 3a00_A Guanylate kinase, GMP k 96.0 0.0033 1.1E-07 52.9 3.0 21 24-44 4-24 (186)
241 1znw_A Guanylate kinase, GMP k 96.0 0.0036 1.2E-07 53.6 3.0 22 23-44 22-43 (207)
242 3tr0_A Guanylate kinase, GMP k 96.0 0.0036 1.2E-07 53.0 3.1 22 23-44 9-30 (205)
243 1s96_A Guanylate kinase, GMP k 95.9 0.0038 1.3E-07 54.3 3.1 22 23-44 18-39 (219)
244 1z6g_A Guanylate kinase; struc 95.9 0.0039 1.3E-07 54.1 3.0 22 23-44 25-46 (218)
245 1t9h_A YLOQ, probable GTPase E 95.9 0.0024 8.3E-08 58.6 1.8 22 23-44 175-196 (307)
246 1ex7_A Guanylate kinase; subst 95.9 0.0043 1.5E-07 52.7 3.2 21 24-44 4-24 (186)
247 3k9g_A PF-32 protein; ssgcid, 95.8 0.05 1.7E-06 48.1 10.1 65 82-162 144-208 (267)
248 4gp7_A Metallophosphoesterase; 95.8 0.0041 1.4E-07 51.6 2.6 20 23-42 11-30 (171)
249 1zp6_A Hypothetical protein AT 95.7 0.0048 1.6E-07 51.7 2.9 22 23-44 11-32 (191)
250 3tau_A Guanylate kinase, GMP k 95.7 0.0051 1.7E-07 52.8 3.1 22 23-44 10-31 (208)
251 2xxa_A Signal recognition part 95.7 0.017 6E-07 55.4 6.9 22 21-42 100-121 (433)
252 1htw_A HI0065; nucleotide-bind 95.7 0.0057 2E-07 50.4 3.0 23 23-45 35-57 (158)
253 3c8u_A Fructokinase; YP_612366 95.7 0.0068 2.3E-07 51.9 3.6 24 21-44 22-45 (208)
254 3tif_A Uncharacterized ABC tra 95.6 0.006 2.1E-07 53.6 2.9 22 23-44 33-54 (235)
255 2rcn_A Probable GTPase ENGC; Y 95.5 0.0075 2.6E-07 56.5 3.5 23 23-45 217-239 (358)
256 2qor_A Guanylate kinase; phosp 95.4 0.0087 3E-07 51.0 3.2 22 23-44 14-35 (204)
257 2onk_A Molybdate/tungstate ABC 95.4 0.0087 3E-07 52.8 3.3 22 23-44 26-47 (240)
258 2j41_A Guanylate kinase; GMP, 95.3 0.0085 2.9E-07 50.6 3.0 23 23-45 8-30 (207)
259 2pcj_A ABC transporter, lipopr 95.3 0.0072 2.5E-07 52.7 2.6 22 23-44 32-53 (224)
260 2bdt_A BH3686; alpha-beta prot 95.3 0.0091 3.1E-07 50.0 3.0 21 23-43 4-24 (189)
261 1kag_A SKI, shikimate kinase I 95.3 0.0096 3.3E-07 48.9 3.1 22 23-44 6-27 (173)
262 1b0u_A Histidine permease; ABC 95.3 0.0087 3E-07 53.5 2.9 22 23-44 34-55 (262)
263 2i3b_A HCR-ntpase, human cance 95.2 0.0085 2.9E-07 50.9 2.7 22 23-44 3-24 (189)
264 1sgw_A Putative ABC transporte 95.2 0.0091 3.1E-07 51.8 2.9 22 23-44 37-58 (214)
265 2cbz_A Multidrug resistance-as 95.2 0.0098 3.3E-07 52.3 3.1 22 23-44 33-54 (237)
266 3gfo_A Cobalt import ATP-bindi 95.2 0.0091 3.1E-07 53.8 2.9 22 23-44 36-57 (275)
267 1mv5_A LMRA, multidrug resista 95.2 0.01 3.5E-07 52.4 3.2 22 23-44 30-51 (243)
268 2ff7_A Alpha-hemolysin translo 95.2 0.01 3.5E-07 52.6 3.1 22 23-44 37-58 (247)
269 3cwq_A Para family chromosome 95.2 0.22 7.5E-06 42.4 11.6 67 82-165 67-134 (209)
270 3lw7_A Adenylate kinase relate 95.2 0.012 4E-07 48.0 3.3 20 22-41 2-21 (179)
271 2eyu_A Twitching motility prot 95.2 0.01 3.5E-07 53.1 3.1 21 23-43 27-47 (261)
272 1g6h_A High-affinity branched- 95.2 0.0095 3.3E-07 53.0 2.9 22 23-44 35-56 (257)
273 3kb2_A SPBC2 prophage-derived 95.2 0.011 3.8E-07 48.2 3.1 21 23-43 3-23 (173)
274 4g1u_C Hemin import ATP-bindin 95.1 0.0097 3.3E-07 53.3 2.9 22 23-44 39-60 (266)
275 2bbw_A Adenylate kinase 4, AK4 95.1 0.012 4.1E-07 51.7 3.5 21 22-42 28-48 (246)
276 4eun_A Thermoresistant glucoki 95.1 0.011 3.7E-07 50.2 3.1 21 23-43 31-51 (200)
277 2pze_A Cystic fibrosis transme 95.1 0.011 3.8E-07 51.7 3.2 22 23-44 36-57 (229)
278 2d2e_A SUFC protein; ABC-ATPas 95.1 0.011 3.9E-07 52.3 3.2 22 23-44 31-52 (250)
279 3t61_A Gluconokinase; PSI-biol 95.1 0.012 4.3E-07 49.7 3.4 22 23-44 20-41 (202)
280 2zu0_C Probable ATP-dependent 95.1 0.012 4E-07 52.8 3.3 22 23-44 48-69 (267)
281 3asz_A Uridine kinase; cytidin 95.1 0.011 3.6E-07 50.4 2.9 23 22-44 7-29 (211)
282 2olj_A Amino acid ABC transpor 95.1 0.011 3.6E-07 53.0 2.9 22 23-44 52-73 (263)
283 1ji0_A ABC transporter; ATP bi 95.1 0.011 3.6E-07 52.2 2.9 22 23-44 34-55 (240)
284 2v9p_A Replication protein E1; 95.1 0.012 4E-07 54.0 3.2 22 23-44 128-149 (305)
285 2qi9_C Vitamin B12 import ATP- 95.0 0.011 3.8E-07 52.5 2.9 22 23-44 28-49 (249)
286 1u0l_A Probable GTPase ENGC; p 95.0 0.01 3.4E-07 54.1 2.8 23 23-45 171-193 (301)
287 3ec2_A DNA replication protein 95.0 0.01 3.5E-07 49.3 2.5 22 23-44 40-61 (180)
288 2chg_A Replication factor C sm 95.0 0.036 1.2E-06 46.6 6.0 20 24-43 41-60 (226)
289 1np6_A Molybdopterin-guanine d 95.0 0.012 4.3E-07 49.2 3.1 22 23-44 8-29 (174)
290 2yv5_A YJEQ protein; hydrolase 95.0 0.012 4.1E-07 53.7 3.2 20 23-42 167-186 (302)
291 2ghi_A Transport protein; mult 95.0 0.012 4.1E-07 52.5 3.1 22 23-44 48-69 (260)
292 1vpl_A ABC transporter, ATP-bi 95.0 0.011 3.9E-07 52.6 2.9 22 23-44 43-64 (256)
293 2ehv_A Hypothetical protein PH 95.0 0.013 4.3E-07 51.0 3.2 20 23-42 32-51 (251)
294 1ly1_A Polynucleotide kinase; 95.0 0.014 4.7E-07 48.1 3.2 22 22-43 3-24 (181)
295 3b85_A Phosphate starvation-in 95.0 0.01 3.5E-07 51.2 2.5 22 23-44 24-45 (208)
296 2ihy_A ABC transporter, ATP-bi 95.0 0.013 4.4E-07 53.0 3.2 22 23-44 49-70 (279)
297 2ixe_A Antigen peptide transpo 94.9 0.013 4.4E-07 52.7 3.1 22 23-44 47-68 (271)
298 1knq_A Gluconate kinase; ALFA/ 94.9 0.02 7E-07 47.1 4.1 22 22-43 9-30 (175)
299 3fb4_A Adenylate kinase; psych 94.9 0.015 5.1E-07 49.7 3.4 22 22-43 1-22 (216)
300 3lnc_A Guanylate kinase, GMP k 94.9 0.009 3.1E-07 51.9 1.9 22 23-44 29-51 (231)
301 2cdn_A Adenylate kinase; phosp 94.9 0.02 6.8E-07 48.4 4.0 27 17-43 16-42 (201)
302 2nq2_C Hypothetical ABC transp 94.9 0.013 4.4E-07 52.1 2.9 22 23-44 33-54 (253)
303 4a74_A DNA repair and recombin 94.9 0.012 4.2E-07 50.5 2.6 22 23-44 27-48 (231)
304 3dl0_A Adenylate kinase; phosp 94.8 0.016 5.5E-07 49.5 3.4 22 22-43 1-22 (216)
305 2jaq_A Deoxyguanosine kinase; 94.8 0.017 5.7E-07 48.6 3.4 21 23-43 2-22 (205)
306 2yz2_A Putative ABC transporte 94.8 0.013 4.6E-07 52.4 2.9 22 23-44 35-56 (266)
307 2f1r_A Molybdopterin-guanine d 94.8 0.0073 2.5E-07 50.5 1.0 22 23-44 4-25 (171)
308 3vaa_A Shikimate kinase, SK; s 94.8 0.018 6.1E-07 48.8 3.4 21 23-43 27-47 (199)
309 2if2_A Dephospho-COA kinase; a 94.7 0.015 5.2E-07 49.2 2.9 22 22-43 2-23 (204)
310 1lw7_A Transcriptional regulat 94.7 0.014 4.6E-07 54.7 2.8 24 21-44 170-193 (365)
311 1cke_A CK, MSSA, protein (cyti 94.7 0.017 5.9E-07 49.6 3.3 22 22-43 6-27 (227)
312 2pjz_A Hypothetical protein ST 94.7 0.016 5.5E-07 51.8 3.2 22 23-44 32-53 (263)
313 1qhx_A CPT, protein (chloramph 94.7 0.018 6.1E-07 47.5 3.2 21 23-43 5-25 (178)
314 3uie_A Adenylyl-sulfate kinase 94.7 0.0087 3E-07 50.8 1.2 22 23-44 27-48 (200)
315 3aez_A Pantothenate kinase; tr 94.7 0.016 5.4E-07 53.2 3.1 24 20-43 89-112 (312)
316 3nh6_A ATP-binding cassette SU 94.7 0.011 3.8E-07 54.1 2.0 22 23-44 82-103 (306)
317 1nks_A Adenylate kinase; therm 94.6 0.02 7E-07 47.5 3.3 21 23-43 3-23 (194)
318 1kht_A Adenylate kinase; phosp 94.5 0.023 7.9E-07 47.1 3.4 22 22-43 4-25 (192)
319 1jjv_A Dephospho-COA kinase; P 94.5 0.025 8.5E-07 47.9 3.6 22 22-43 3-24 (206)
320 1jbk_A CLPB protein; beta barr 94.5 0.021 7.1E-07 46.9 3.1 22 23-44 45-66 (195)
321 3fvq_A Fe(3+) IONS import ATP- 94.4 0.018 6.2E-07 53.9 2.8 22 23-44 32-53 (359)
322 2kjq_A DNAA-related protein; s 94.4 0.015 5.1E-07 47.3 1.9 22 23-44 38-59 (149)
323 2bbs_A Cystic fibrosis transme 94.4 0.019 6.4E-07 52.2 2.8 22 23-44 66-87 (290)
324 1z47_A CYSA, putative ABC-tran 94.4 0.022 7.4E-07 53.3 3.2 22 23-44 43-64 (355)
325 3cm0_A Adenylate kinase; ATP-b 94.3 0.028 9.7E-07 46.6 3.6 22 22-43 5-26 (186)
326 4ido_A Atlastin-1; GTPase, GTP 94.3 0.18 6.2E-06 48.5 9.6 23 20-42 66-88 (457)
327 3tui_C Methionine import ATP-b 94.3 0.023 7.9E-07 53.3 3.3 22 23-44 56-77 (366)
328 2it1_A 362AA long hypothetical 94.3 0.023 8E-07 53.2 3.3 22 23-44 31-52 (362)
329 2yyz_A Sugar ABC transporter, 94.3 0.023 7.8E-07 53.2 3.2 22 23-44 31-52 (359)
330 3trf_A Shikimate kinase, SK; a 94.3 0.027 9.4E-07 46.7 3.4 21 23-43 7-27 (185)
331 1ixz_A ATP-dependent metallopr 94.3 0.023 7.9E-07 49.9 3.1 21 24-44 52-72 (254)
332 1rj9_A FTSY, signal recognitio 94.3 0.022 7.6E-07 52.0 3.0 21 23-43 104-124 (304)
333 3jvv_A Twitching mobility prot 94.3 0.022 7.4E-07 53.3 3.0 21 23-43 125-145 (356)
334 2qt1_A Nicotinamide riboside k 94.2 0.033 1.1E-06 47.2 3.9 24 21-44 21-44 (207)
335 3rlf_A Maltose/maltodextrin im 94.2 0.024 8.2E-07 53.5 3.3 22 23-44 31-52 (381)
336 1e4v_A Adenylate kinase; trans 94.2 0.024 8.3E-07 48.5 3.0 22 22-43 1-22 (214)
337 1y63_A LMAJ004144AAA protein; 94.2 0.035 1.2E-06 46.3 4.0 24 21-44 10-33 (184)
338 1g29_1 MALK, maltose transport 94.2 0.024 8.3E-07 53.3 3.2 22 23-44 31-52 (372)
339 1odf_A YGR205W, hypothetical 3 94.2 0.036 1.2E-06 50.3 4.2 24 20-43 30-53 (290)
340 1v43_A Sugar-binding transport 94.2 0.025 8.7E-07 53.2 3.3 22 23-44 39-60 (372)
341 2rhm_A Putative kinase; P-loop 94.2 0.035 1.2E-06 46.2 3.8 22 22-43 6-27 (193)
342 2gza_A Type IV secretion syste 94.1 0.022 7.6E-07 53.2 2.8 22 23-44 177-198 (361)
343 3sr0_A Adenylate kinase; phosp 94.1 0.03 1E-06 48.1 3.4 23 22-44 1-23 (206)
344 2x8a_A Nuclear valosin-contain 94.1 0.026 8.8E-07 50.7 3.0 21 24-44 47-67 (274)
345 2jeo_A Uridine-cytidine kinase 94.1 0.034 1.1E-06 48.8 3.7 22 22-43 26-47 (245)
346 2plr_A DTMP kinase, probable t 94.0 0.035 1.2E-06 46.9 3.6 22 22-43 5-26 (213)
347 3b9q_A Chloroplast SRP recepto 94.0 0.028 9.4E-07 51.3 3.1 22 22-43 101-122 (302)
348 2pt5_A Shikimate kinase, SK; a 94.0 0.033 1.1E-06 45.3 3.3 21 23-43 2-22 (168)
349 3kta_A Chromosome segregation 94.0 0.028 9.6E-07 46.5 2.8 21 23-43 28-48 (182)
350 1m7g_A Adenylylsulfate kinase; 93.9 0.017 5.9E-07 49.4 1.5 22 22-43 26-47 (211)
351 1rz3_A Hypothetical protein rb 93.9 0.039 1.3E-06 46.8 3.7 24 20-43 21-44 (201)
352 2w0m_A SSO2452; RECA, SSPF, un 93.9 0.032 1.1E-06 47.7 3.2 21 23-43 25-45 (235)
353 1uf9_A TT1252 protein; P-loop, 93.9 0.037 1.3E-06 46.4 3.5 25 20-44 7-31 (203)
354 2ewv_A Twitching motility prot 93.9 0.03 1E-06 52.6 3.2 21 23-43 138-158 (372)
355 1xjc_A MOBB protein homolog; s 93.9 0.034 1.2E-06 46.3 3.2 21 23-43 6-26 (169)
356 3d31_A Sulfate/molybdate ABC t 93.9 0.022 7.4E-07 53.2 2.1 22 23-44 28-49 (348)
357 1aky_A Adenylate kinase; ATP:A 93.9 0.036 1.2E-06 47.5 3.4 22 22-43 5-26 (220)
358 1tev_A UMP-CMP kinase; ploop, 93.9 0.041 1.4E-06 45.6 3.7 22 22-43 4-25 (196)
359 3e70_C DPA, signal recognition 93.8 0.03 1E-06 51.7 3.1 22 22-43 130-151 (328)
360 3iij_A Coilin-interacting nucl 93.8 0.034 1.2E-06 46.0 3.2 22 22-43 12-33 (180)
361 1gvn_B Zeta; postsegregational 93.8 0.043 1.5E-06 49.5 4.1 24 20-43 32-55 (287)
362 1ukz_A Uridylate kinase; trans 93.8 0.048 1.7E-06 45.9 4.1 24 20-43 14-37 (203)
363 1via_A Shikimate kinase; struc 93.8 0.032 1.1E-06 46.0 2.9 21 23-43 6-26 (175)
364 2pt7_A CAG-ALFA; ATPase, prote 93.8 0.024 8.3E-07 52.4 2.3 22 23-44 173-194 (330)
365 1zd8_A GTP:AMP phosphotransfer 93.8 0.033 1.1E-06 48.1 3.1 22 22-43 8-29 (227)
366 3tlx_A Adenylate kinase 2; str 93.8 0.043 1.5E-06 48.2 3.8 23 21-43 29-51 (243)
367 2v54_A DTMP kinase, thymidylat 93.8 0.039 1.3E-06 46.4 3.4 23 22-44 5-27 (204)
368 1iy2_A ATP-dependent metallopr 93.7 0.033 1.1E-06 49.7 3.1 21 24-44 76-96 (278)
369 3gd7_A Fusion complex of cysti 93.7 0.03 1E-06 53.1 2.8 22 23-44 49-70 (390)
370 1uj2_A Uridine-cytidine kinase 93.7 0.041 1.4E-06 48.4 3.6 25 19-43 20-44 (252)
371 2xb4_A Adenylate kinase; ATP-b 93.7 0.039 1.3E-06 47.6 3.4 21 23-43 2-22 (223)
372 1gtv_A TMK, thymidylate kinase 93.7 0.014 4.9E-07 49.5 0.6 21 23-43 2-22 (214)
373 4e22_A Cytidylate kinase; P-lo 93.7 0.04 1.4E-06 48.7 3.5 21 22-42 28-48 (252)
374 1sq5_A Pantothenate kinase; P- 93.6 0.043 1.5E-06 50.0 3.7 23 21-43 80-102 (308)
375 3tqc_A Pantothenate kinase; bi 93.6 0.049 1.7E-06 50.2 4.1 25 19-43 90-114 (321)
376 2p65_A Hypothetical protein PF 93.6 0.028 9.4E-07 46.1 2.2 22 23-44 45-66 (187)
377 2vp4_A Deoxynucleoside kinase; 93.6 0.026 8.9E-07 49.0 2.1 24 21-44 20-43 (230)
378 2z0h_A DTMP kinase, thymidylat 93.6 0.044 1.5E-06 45.7 3.4 21 23-43 2-22 (197)
379 2ze6_A Isopentenyl transferase 93.6 0.037 1.3E-06 48.9 3.1 21 23-43 3-23 (253)
380 2yvu_A Probable adenylyl-sulfa 93.6 0.057 2E-06 44.9 4.1 22 22-43 14-35 (186)
381 1p9r_A General secretion pathw 93.5 0.035 1.2E-06 53.0 3.0 22 23-44 169-190 (418)
382 2wwf_A Thymidilate kinase, put 93.5 0.049 1.7E-06 46.0 3.7 22 22-43 11-32 (212)
383 1in4_A RUVB, holliday junction 93.5 0.037 1.3E-06 51.0 3.0 22 23-44 53-74 (334)
384 1oxx_K GLCV, glucose, ABC tran 93.5 0.021 7.3E-07 53.3 1.4 22 23-44 33-54 (353)
385 2pbr_A DTMP kinase, thymidylat 93.5 0.046 1.6E-06 45.4 3.4 21 23-43 2-22 (195)
386 3be4_A Adenylate kinase; malar 93.4 0.043 1.5E-06 47.1 3.1 22 22-43 6-27 (217)
387 3bos_A Putative DNA replicatio 93.4 0.042 1.4E-06 47.1 3.0 21 23-43 54-74 (242)
388 2c95_A Adenylate kinase 1; tra 93.3 0.048 1.6E-06 45.4 3.2 22 22-43 10-31 (196)
389 2obl_A ESCN; ATPase, hydrolase 93.3 0.04 1.4E-06 51.3 2.9 22 23-44 73-94 (347)
390 2cvh_A DNA repair and recombin 93.3 0.047 1.6E-06 46.3 3.2 21 23-43 22-42 (220)
391 1zcb_A G alpha I/13; GTP-bindi 93.3 0.053 1.8E-06 50.8 3.7 24 19-42 31-54 (362)
392 2w58_A DNAI, primosome compone 93.2 0.046 1.6E-06 46.0 3.0 23 22-44 55-77 (202)
393 2og2_A Putative signal recogni 93.2 0.043 1.5E-06 51.3 3.1 22 22-43 158-179 (359)
394 1n0w_A DNA repair protein RAD5 93.2 0.048 1.7E-06 47.0 3.2 22 23-44 26-47 (243)
395 1f2t_A RAD50 ABC-ATPase; DNA d 93.2 0.053 1.8E-06 43.9 3.2 20 23-42 25-44 (149)
396 1cr0_A DNA primase/helicase; R 93.2 0.039 1.3E-06 49.7 2.6 22 23-44 37-58 (296)
397 1zak_A Adenylate kinase; ATP:A 93.2 0.042 1.4E-06 47.2 2.8 22 22-43 6-27 (222)
398 2bwj_A Adenylate kinase 5; pho 93.2 0.048 1.6E-06 45.5 3.1 22 22-43 13-34 (199)
399 1lv7_A FTSH; alpha/beta domain 93.1 0.048 1.6E-06 47.9 3.1 22 23-44 47-68 (257)
400 2oap_1 GSPE-2, type II secreti 93.1 0.04 1.4E-06 54.1 2.7 22 23-44 262-283 (511)
401 1e6c_A Shikimate kinase; phosp 93.1 0.052 1.8E-06 44.3 3.1 21 23-43 4-24 (173)
402 2pez_A Bifunctional 3'-phospho 93.1 0.052 1.8E-06 44.8 3.1 22 22-43 6-27 (179)
403 3a4m_A L-seryl-tRNA(SEC) kinas 93.1 0.053 1.8E-06 48.1 3.2 22 22-43 5-26 (260)
404 2yhs_A FTSY, cell division pro 93.1 0.047 1.6E-06 53.2 3.1 22 22-43 294-315 (503)
405 1nn5_A Similar to deoxythymidy 93.1 0.054 1.8E-06 45.8 3.2 22 22-43 10-31 (215)
406 2npi_A Protein CLP1; CLP1-PCF1 93.0 0.041 1.4E-06 53.2 2.6 22 23-44 140-161 (460)
407 1ak2_A Adenylate kinase isoenz 93.0 0.066 2.3E-06 46.4 3.7 22 22-43 17-38 (233)
408 1njg_A DNA polymerase III subu 93.0 0.052 1.8E-06 46.1 3.0 21 23-43 47-67 (250)
409 1vht_A Dephospho-COA kinase; s 92.9 0.067 2.3E-06 45.7 3.6 22 22-43 5-26 (218)
410 1qf9_A UMP/CMP kinase, protein 92.9 0.075 2.6E-06 43.9 3.8 22 22-43 7-28 (194)
411 2vli_A Antibiotic resistance p 92.9 0.043 1.5E-06 45.3 2.2 22 22-43 6-27 (183)
412 1nij_A Hypothetical protein YJ 92.8 0.039 1.3E-06 50.6 2.1 22 23-44 6-27 (318)
413 2p5t_B PEZT; postsegregational 92.7 0.058 2E-06 47.5 3.0 25 20-44 31-55 (253)
414 2iyv_A Shikimate kinase, SK; t 92.7 0.066 2.2E-06 44.3 3.2 21 23-43 4-24 (184)
415 2dpy_A FLII, flagellum-specifi 92.7 0.055 1.9E-06 52.0 2.9 22 23-44 159-180 (438)
416 1yqt_A RNAse L inhibitor; ATP- 92.6 0.065 2.2E-06 52.9 3.5 22 23-44 49-70 (538)
417 3qf7_A RAD50; ABC-ATPase, ATPa 92.6 0.064 2.2E-06 50.2 3.2 19 24-42 26-44 (365)
418 4eaq_A DTMP kinase, thymidylat 92.5 0.066 2.2E-06 46.6 3.1 25 20-44 25-49 (229)
419 3euj_A Chromosome partition pr 92.5 0.061 2.1E-06 52.3 3.1 21 23-43 31-51 (483)
420 3b5x_A Lipid A export ATP-bind 92.5 0.064 2.2E-06 53.3 3.4 22 23-44 371-392 (582)
421 3r20_A Cytidylate kinase; stru 92.4 0.081 2.8E-06 46.4 3.5 23 21-43 9-31 (233)
422 3umf_A Adenylate kinase; rossm 92.4 0.075 2.6E-06 46.0 3.3 21 24-44 32-52 (217)
423 3b60_A Lipid A export ATP-bind 92.4 0.057 1.9E-06 53.7 2.8 22 23-44 371-392 (582)
424 3nwj_A ATSK2; P loop, shikimat 92.4 0.07 2.4E-06 47.3 3.0 21 23-43 50-70 (250)
425 3h4m_A Proteasome-activating n 92.2 0.074 2.5E-06 47.3 3.0 22 23-44 53-74 (285)
426 2qz4_A Paraplegin; AAA+, SPG7, 92.2 0.079 2.7E-06 46.3 3.1 21 23-43 41-61 (262)
427 3n70_A Transport activator; si 92.1 0.087 3E-06 42.1 3.0 22 23-44 26-47 (145)
428 2f6r_A COA synthase, bifunctio 92.1 0.092 3.2E-06 47.1 3.5 24 19-42 73-96 (281)
429 3b9p_A CG5977-PA, isoform A; A 92.0 0.077 2.6E-06 47.5 3.0 22 23-44 56-77 (297)
430 2yl4_A ATP-binding cassette SU 91.9 0.059 2E-06 53.8 2.2 22 23-44 372-393 (595)
431 1sxj_E Activator 1 40 kDa subu 91.9 0.11 3.7E-06 47.7 3.8 20 24-43 39-58 (354)
432 3ozx_A RNAse L inhibitor; ATP 91.9 0.076 2.6E-06 52.4 2.9 22 23-44 27-48 (538)
433 3syl_A Protein CBBX; photosynt 91.9 0.12 4E-06 46.5 4.0 22 21-42 67-88 (309)
434 1svm_A Large T antigen; AAA+ f 91.8 0.084 2.9E-06 49.7 3.0 21 23-43 171-191 (377)
435 2qmh_A HPR kinase/phosphorylas 91.8 0.097 3.3E-06 44.8 3.1 23 22-44 35-57 (205)
436 3j16_B RLI1P; ribosome recycli 91.8 0.088 3E-06 52.7 3.3 22 23-44 105-126 (608)
437 1l8q_A Chromosomal replication 91.8 0.085 2.9E-06 48.0 3.0 21 23-43 39-59 (324)
438 3qf4_B Uncharacterized ABC tra 91.8 0.065 2.2E-06 53.5 2.3 22 23-44 383-404 (598)
439 2dr3_A UPF0273 protein PH0284; 91.7 0.086 2.9E-06 45.5 2.8 21 23-43 25-45 (247)
440 2qby_A CDC6 homolog 1, cell di 91.7 0.079 2.7E-06 48.8 2.7 21 23-43 47-67 (386)
441 1nlf_A Regulatory protein REPA 91.7 0.084 2.9E-06 47.1 2.8 21 23-43 32-52 (279)
442 1ltq_A Polynucleotide kinase; 91.7 0.096 3.3E-06 47.0 3.2 22 22-43 3-24 (301)
443 1zuh_A Shikimate kinase; alpha 91.6 0.12 3.9E-06 42.1 3.3 21 23-43 9-29 (168)
444 3cf0_A Transitional endoplasmi 91.5 0.097 3.3E-06 47.3 3.0 22 23-44 51-72 (301)
445 2px0_A Flagellar biosynthesis 91.4 0.088 3E-06 47.8 2.6 20 23-42 107-126 (296)
446 2r8r_A Sensor protein; KDPD, P 91.4 0.15 5.2E-06 44.4 4.0 24 19-42 4-27 (228)
447 1yqt_A RNAse L inhibitor; ATP- 91.4 0.11 3.8E-06 51.2 3.5 22 23-44 314-335 (538)
448 4a82_A Cystic fibrosis transme 91.4 0.06 2E-06 53.6 1.6 22 23-44 369-390 (578)
449 3qks_A DNA double-strand break 91.4 0.12 4E-06 44.1 3.2 20 23-42 25-44 (203)
450 2qen_A Walker-type ATPase; unk 91.4 0.1 3.5E-06 47.3 3.1 22 23-44 33-54 (350)
451 1fnn_A CDC6P, cell division co 91.3 0.1 3.5E-06 48.2 3.1 22 23-44 46-67 (389)
452 3end_A Light-independent proto 91.3 1.4 4.6E-05 39.5 10.5 82 82-189 156-238 (307)
453 3bk7_A ABC transporter ATP-bin 91.3 0.1 3.5E-06 52.2 3.2 22 23-44 119-140 (607)
454 3qf4_A ABC transporter, ATP-bi 91.3 0.072 2.5E-06 53.1 2.0 22 23-44 371-392 (587)
455 3t15_A Ribulose bisphosphate c 91.3 0.096 3.3E-06 47.3 2.7 23 22-44 37-59 (293)
456 1ofh_A ATP-dependent HSL prote 91.2 0.11 3.7E-06 46.5 3.1 22 23-44 52-73 (310)
457 2grj_A Dephospho-COA kinase; T 91.2 0.13 4.6E-06 43.5 3.4 25 20-44 11-35 (192)
458 3ozx_A RNAse L inhibitor; ATP 91.2 0.1 3.4E-06 51.6 2.9 22 23-44 296-317 (538)
459 3a8t_A Adenylate isopentenyltr 91.1 0.13 4.3E-06 47.7 3.3 22 23-44 42-63 (339)
460 3exa_A TRNA delta(2)-isopenten 91.1 0.12 4.2E-06 47.3 3.2 22 23-44 5-26 (322)
461 1d2n_A N-ethylmaleimide-sensit 91.0 0.12 4E-06 45.8 3.0 23 22-44 65-87 (272)
462 1q3t_A Cytidylate kinase; nucl 90.9 0.15 5E-06 44.2 3.5 23 21-43 16-38 (236)
463 2fna_A Conserved hypothetical 90.9 0.11 3.6E-06 47.4 2.6 22 23-44 32-53 (357)
464 3bk7_A ABC transporter ATP-bin 90.9 0.13 4.5E-06 51.5 3.5 22 23-44 384-405 (607)
465 1vma_A Cell division protein F 90.9 0.13 4.3E-06 47.0 3.1 21 23-43 106-126 (306)
466 1tue_A Replication protein E1; 90.8 0.1 3.4E-06 45.0 2.2 22 22-43 59-80 (212)
467 3crm_A TRNA delta(2)-isopenten 90.7 0.14 4.7E-06 47.2 3.2 21 23-43 7-27 (323)
468 4fcw_A Chaperone protein CLPB; 90.7 0.2 6.8E-06 44.9 4.3 23 22-44 48-70 (311)
469 3d3q_A TRNA delta(2)-isopenten 90.6 0.14 4.8E-06 47.4 3.2 22 22-43 8-29 (340)
470 3foz_A TRNA delta(2)-isopenten 90.5 0.15 5.1E-06 46.7 3.2 22 23-44 12-33 (316)
471 1qhl_A Protein (cell division 90.5 0.026 8.9E-07 49.3 -1.8 21 24-44 30-50 (227)
472 3ake_A Cytidylate kinase; CMP 90.4 0.16 5.6E-06 42.5 3.3 21 23-43 4-24 (208)
473 1p5z_B DCK, deoxycytidine kina 90.4 0.11 3.6E-06 46.0 2.1 25 20-44 23-47 (263)
474 3j16_B RLI1P; ribosome recycli 90.4 0.14 4.9E-06 51.2 3.3 21 24-44 381-401 (608)
475 3zvl_A Bifunctional polynucleo 90.4 0.14 4.7E-06 48.8 3.0 22 22-43 259-280 (416)
476 1sxj_C Activator 1 40 kDa subu 90.4 0.14 4.8E-06 47.0 3.0 21 24-44 49-69 (340)
477 1pzn_A RAD51, DNA repair and r 90.3 0.13 4.5E-06 47.7 2.8 22 23-44 133-154 (349)
478 2v1u_A Cell division control p 90.3 0.12 4.2E-06 47.5 2.6 22 23-44 46-67 (387)
479 1xwi_A SKD1 protein; VPS4B, AA 90.2 0.15 5.1E-06 46.7 3.0 22 23-44 47-68 (322)
480 1sxj_D Activator 1 41 kDa subu 90.2 0.15 5.2E-06 46.5 3.0 21 24-44 61-81 (353)
481 2r62_A Cell division protease 90.0 0.081 2.8E-06 46.6 0.9 20 24-43 47-66 (268)
482 2iw3_A Elongation factor 3A; a 89.9 0.18 6.1E-06 53.2 3.6 24 23-46 463-486 (986)
483 2qgz_A Helicase loader, putati 89.9 0.16 5.6E-06 46.2 3.0 22 22-43 153-174 (308)
484 3co5_A Putative two-component 89.8 0.087 3E-06 42.0 1.0 22 23-44 29-50 (143)
485 3qkt_A DNA double-strand break 89.7 0.19 6.4E-06 46.3 3.2 19 24-42 26-44 (339)
486 3pfi_A Holliday junction ATP-d 89.7 0.17 6E-06 46.0 3.0 22 23-44 57-78 (338)
487 3eie_A Vacuolar protein sortin 89.7 0.3 1E-05 44.5 4.6 23 22-44 52-74 (322)
488 3u61_B DNA polymerase accessor 89.7 1.5 5.3E-05 39.4 9.4 21 24-44 51-71 (324)
489 4f4c_A Multidrug resistance pr 89.7 0.1 3.5E-06 57.0 1.6 22 23-44 1107-1128(1321)
490 2bjv_A PSP operon transcriptio 89.7 0.18 6.3E-06 44.3 3.1 22 23-44 31-52 (265)
491 3lda_A DNA repair protein RAD5 89.6 0.16 5.6E-06 48.1 2.8 20 23-42 180-199 (400)
492 3pxg_A Negative regulator of g 89.6 0.17 5.9E-06 48.8 3.0 22 23-44 203-224 (468)
493 3gmt_A Adenylate kinase; ssgci 89.6 0.22 7.6E-06 43.5 3.4 24 20-43 7-30 (230)
494 3uk6_A RUVB-like 2; hexameric 89.6 0.16 5.4E-06 46.8 2.6 22 23-44 72-93 (368)
495 1tf7_A KAIC; homohexamer, hexa 89.6 0.16 5.5E-06 49.8 2.8 19 24-42 42-60 (525)
496 2z4s_A Chromosomal replication 89.5 0.18 6E-06 48.4 3.0 21 23-43 132-152 (440)
497 2qby_B CDC6 homolog 3, cell di 89.5 0.17 5.7E-06 46.8 2.7 21 23-43 47-67 (384)
498 1e69_A Chromosome segregation 89.2 0.15 5.2E-06 46.5 2.2 20 23-42 26-45 (322)
499 4b4t_K 26S protease regulatory 89.2 0.2 6.8E-06 47.9 3.1 22 23-44 208-229 (428)
500 3tqf_A HPR(Ser) kinase; transf 89.2 0.2 6.9E-06 41.9 2.7 22 23-44 18-39 (181)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=6.1e-37 Score=271.81 Aligned_cols=170 Identities=23% Similarity=0.327 Sum_probs=140.4
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
.+.|.+++||+|||++|||||||+++|+++.|...+.+|+|.++..+.+.++ +..+.++||||+|++
T Consensus 7 ~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~-------------~~~v~l~iwDtaGqe 73 (216)
T 4dkx_A 7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-------------DRTIRLQLWDTAGLE 73 (216)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECS-------------SCEEEEEEECCSCTT
T ss_pred CCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEec-------------ceEEEEEEEECCCch
Confidence 3456788999999999999999999999999999999999999999888876 678999999999999
Q ss_pred hhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcc
Q 019959 95 RYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSG 174 (333)
Q Consensus 95 ~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~ 174 (333)
+|..++..|++.++++|+|||++++.||+++..|+..+..... .++|+||||||+||.+. |.|+.
T Consensus 74 ~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~------------~~~piilVgNK~Dl~~~--r~V~~- 138 (216)
T 4dkx_A 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG------------SDVIIMLVGNKTDLADK--RQVSI- 138 (216)
T ss_dssp TCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT------------TSSEEEEEEECTTCGGG--CCSCH-
T ss_pred hhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcC------------CCCeEEEEeeccchHhc--CcccH-
Confidence 9999999999999999999999999999999999999987642 47999999999999876 77874
Q ss_pred cHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 175 NLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
++++++|++++ ++|+| ||||+|.||+++|+.|++.+..
T Consensus 139 ---~e~~~~a~~~~-------~~~~e---------~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 139 ---EEGERKAKELN-------VMFIE---------TSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp ---HHHHHHHHHHT-------CEEEE---------EBTTTTBSHHHHHHHHHHHC--
T ss_pred ---HHHhhHHHHhC-------CeeEE---------EeCCCCcCHHHHHHHHHHHHHh
Confidence 88999999998 46888 9999999999999999887654
No 2
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.97 E-value=1.2e-30 Score=227.72 Aligned_cols=169 Identities=26% Similarity=0.431 Sum_probs=140.4
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.++ +..+.+.||||+|+++|.
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~~ 92 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ-------------GKRVKLQIWDTAGQERFR 92 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEET-------------TEEEEEEEECCTTCGGGH
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEEC-------------CEEEEEEEEECCCcHhHH
Confidence 4567999999999999999999999999988888999999988888876 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+... +.+. .
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~NK~Dl~~~--~~v~----~ 154 (201)
T 2hup_A 93 TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG------------SNIVQLLIGNKSDLSEL--REVS----L 154 (201)
T ss_dssp HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECTTCGGG--CCSC----H
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------CCCCEEEEEECCccccc--cccC----H
Confidence 9999999999999999999999999999999999988742 37899999999999865 5555 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++++++++.+++. +|+| |||++|.|++++|+.+.+.+.++
T Consensus 155 ~~~~~~~~~~~~~------~~~~---------~SA~~g~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 155 AEAQSLAEHYDIL------CAIE---------TSAKDSSNVEEAFLRVATELIMR 194 (201)
T ss_dssp HHHHHHHHHTTCS------EEEE---------CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC------EEEE---------EeCCCCCCHHHHHHHHHHHHHHh
Confidence 7788999988742 5777 99999999999999999888764
No 3
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.2e-30 Score=226.71 Aligned_cols=169 Identities=25% Similarity=0.409 Sum_probs=149.7
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.++ +..+.+.||||+|+++|.
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~l~Dt~G~~~~~ 89 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIN-------------GEKVKLQIWDTAGQERFR 89 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEET-------------TEEEEEEEEEECCSGGGH
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-------------CEEEEEEEEECCCcHHHH
Confidence 4567999999999999999999999999988889999999988888876 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.+...+++.+|++|+|||++++.+|+.+..|+.++..... .++|++||+||+|+... +.+..
T Consensus 90 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~NK~Dl~~~--~~v~~---- 151 (201)
T 2ew1_A 90 SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS------------NKVITVLVGNKIDLAER--REVSQ---- 151 (201)
T ss_dssp HHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECGGGGGG--CSSCH----
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------CCCCEEEEEECCCCccc--cccCH----
Confidence 9999999999999999999999999999999999987642 36899999999999754 55553
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++++++++..+ ++|+| |||++|.|++++|+.+++.+.++.
T Consensus 152 ~~~~~~~~~~~-------~~~~~---------~Sa~~g~gv~~l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 152 QRAEEFSEAQD-------MYYLE---------TSAKESDNVEKLFLDLACRLISEA 191 (201)
T ss_dssp HHHHHHHHHHT-------CCEEE---------CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHHHH
Confidence 77888888877 46888 999999999999999999887754
No 4
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.97 E-value=7.5e-31 Score=224.31 Aligned_cols=169 Identities=23% Similarity=0.411 Sum_probs=120.4
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.++ +..+.+.||||+|++++..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~~~~~ 72 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELD-------------GKRIKLQIWDTAGQERFRT 72 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEET-------------TEEEEEEEEEC--------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEEC-------------CEEEEEEEEcCCCChhhhh
Confidence 456899999999999999999999998888888999999988888776 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+.+. +.+. .+
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~nK~Dl~~~--~~v~----~~ 134 (183)
T 2fu5_C 73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS------------ADVEKMILGNKCDVNDK--RQVS----KE 134 (183)
T ss_dssp -CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC------------TTCEEEEEEEC--CCSC--CCSC----HH
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC------------CCCCEEEEEECccCCcc--CcCC----HH
Confidence 999999999999999999999999999999999987642 36899999999999865 4555 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
+++++++.++ ++|+| |||++|.|++++|+.+.+.+.++..
T Consensus 135 ~~~~~~~~~~-------~~~~~---------~Sa~~~~~i~~l~~~l~~~i~~~~~ 174 (183)
T 2fu5_C 135 RGEKLALDYG-------IKFME---------TSAKANINVENAFFTLARDIKAKMD 174 (183)
T ss_dssp HHHHHHHHHT-------CEEEE---------CCC---CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 7889998887 46788 9999999999999999998877643
No 5
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=1.5e-30 Score=229.68 Aligned_cols=173 Identities=21% Similarity=0.305 Sum_probs=141.9
Q ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 14 ~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
.+.+....+||+|+|++|||||||+++|+++.+...+.+|++.++ .+.+.++ +..+.+.||||+|+
T Consensus 20 ~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~ 85 (214)
T 3q3j_B 20 APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETE-------------EQRVELSLWDTSGS 85 (214)
T ss_dssp -------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC---------------CEEEEEEEEECCS
T ss_pred CCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEEC-------------CEEEEEEEEECCCC
Confidence 355667789999999999999999999999999988899998877 3455544 57889999999999
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcccHHH-HHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc------
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRRTKTS-LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK------ 166 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~-l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~------ 166 (333)
++|..++..+++.+|++|+|||++++.+|+. +..|+..+.... .++|++|||||+|+..+
T Consensus 86 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-------------~~~piilv~nK~Dl~~~~~~~~~ 152 (214)
T 3q3j_B 86 PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-------------PSTRVLLIGCKTDLRTDLSTLME 152 (214)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-------------TTSEEEEEEECGGGGGCHHHHHH
T ss_pred HhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEEChhhccchhhhhh
Confidence 9999999999999999999999999999999 699999998874 37999999999999752
Q ss_pred ----cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcC-HHHHHHHHHHHHHHH
Q 019959 167 ----EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY-DKEAVMKFFRMLIRR 232 (333)
Q Consensus 167 ----~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~-v~~~~~~l~~~l~~~ 232 (333)
..+.++ .+++.++++.+++. +|+| |||++|.| ++++|+.+++.+...
T Consensus 153 ~~~~~~~~v~----~~~~~~~~~~~~~~------~~~e---------~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 153 LSHQKQAPIS----YEQGCAIAKQLGAE------IYLE---------GSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp HHHTTCCCCC----HHHHHHHHHHHTCS------EEEE---------CCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred hcccccCccC----HHHHHHHHHHcCCC------EEEE---------eccCCCcccHHHHHHHHHHHHhcc
Confidence 124565 48899999999852 6778 99999987 888888888876654
No 6
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.97 E-value=3.4e-30 Score=222.49 Aligned_cols=170 Identities=22% Similarity=0.415 Sum_probs=145.4
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
.....+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.++ +..+.+.||||+|++++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~ 83 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNID-------------GKQIKLQIWDTAGQESF 83 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEET-------------TEEEEEEEECCTTGGGT
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEEC-------------CEEEEEEEEECCCchhh
Confidence 34667999999999999999999999999888888888998888888876 56789999999999999
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
..++..+++.+|++|+|||+++..+++.+..|+..+..... .++|++||+||+|+... +.+.
T Consensus 84 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~------------~~~piilv~nK~Dl~~~--~~v~---- 145 (191)
T 2a5j_A 84 RSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS------------SNMVIMLIGNKSDLESR--RDVK---- 145 (191)
T ss_dssp SCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECTTCGGG--CCSC----
T ss_pred hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------CCCCEEEEEECcccCCc--cccC----
Confidence 99989999999999999999999999999999999987642 47899999999999764 4555
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
.++++++++.++ ++|+| |||++|.|++++|+.+.+.+.++.
T Consensus 146 ~~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 146 REEGEAFAREHG-------LIFME---------TSAKTACNVEEAFINTAKEIYRKI 186 (191)
T ss_dssp HHHHHHHHHHHT-------CEEEE---------ECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHHHH
Confidence 377888998887 46788 999999999999999999888754
No 7
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.97 E-value=4.9e-30 Score=220.96 Aligned_cols=169 Identities=16% Similarity=0.209 Sum_probs=141.3
Q ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 14 ~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
...+....+||+|+|++|||||||+++|+++.+...+.+|. .++ .+.+.++ +..+.+.||||+|+
T Consensus 13 ~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~-~~~~~~~-------------~~~~~l~i~Dt~G~ 77 (184)
T 3ihw_A 13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRF-KKEIVVD-------------GQSYLLLIRDEGGP 77 (184)
T ss_dssp ---CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEE-EEEEEET-------------TEEEEEEEEECSSS
T ss_pred CCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceE-EEEEEEC-------------CEEEEEEEEECCCC
Confidence 34556788999999999999999999999999988787773 344 4666665 67889999999999
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
+++. +++.+|++|+|||++++.+|+.+..|+.++..... ..++|++|||||+|+.....+.+..
T Consensus 78 ~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~~~~~v~~ 141 (184)
T 3ihw_A 78 PELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-----------ASEVPMVLVGTQDAISAANPRVIDD 141 (184)
T ss_dssp CCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-----------GGGSCEEEEEECTTCBTTBCCCSCH
T ss_pred hhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECcccccccccccCH
Confidence 9886 67889999999999999999999999999987632 1368999999999997554466764
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++++++++.++. ++|+| |||++|.|++++|+.+.+.+.+.
T Consensus 142 ----~~~~~~~~~~~~------~~~~e---------~Sa~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 142 ----SRARKLSTDLKR------CTYYE---------TCATYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp ----HHHHHHHHHTTT------CEEEE---------EBTTTTBTHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHcCC------CeEEE---------ecCCCCCCHHHHHHHHHHHHHHH
Confidence 889999999873 46778 99999999999999999988765
No 8
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.97 E-value=2.7e-30 Score=217.51 Aligned_cols=165 Identities=24% Similarity=0.415 Sum_probs=138.4
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.++ +..+.+.+|||+|++++..
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~ 70 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIG-------------GKRVNLAIWDTAGQERFHA 70 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESS-------------SCEEEEEEEECCCC-----
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEEC-------------CEEEEEEEEECCCcHhhhh
Confidence 467899999999999999999999999988888999999888888775 5788999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
+...+++.+|++|+|||+++..+++.+..|+..+..... .++|+++|+||+|+.+. +.+. .+
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~piilv~nK~Dl~~~--~~~~----~~ 132 (170)
T 1z08_A 71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG------------NEICLCIVGNKIDLEKE--RHVS----IQ 132 (170)
T ss_dssp --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHG------------GGSEEEEEEECGGGGGG--CCSC----HH
T ss_pred hHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC------------CCCeEEEEEECcccccc--cccC----HH
Confidence 999999999999999999999999999999999877532 36899999999999765 4555 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+++++++.++ +++++ +||++|.|++++++.+.+.+.
T Consensus 133 ~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 133 EAESYAESVG-------AKHYH---------TSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp HHHHHHHHTT-------CEEEE---------EBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-------CeEEE---------ecCCCCCCHHHHHHHHHHHHh
Confidence 7888998887 46777 999999999999999988764
No 9
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.97 E-value=6.1e-30 Score=218.60 Aligned_cols=169 Identities=18% Similarity=0.301 Sum_probs=146.2
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
......+||+|+|++|||||||+++|++..+...+.++++..+ ...+.++ +..+.+.||||+|+++
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~~~ 78 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEID-------------NQWAILDVLDTAGQEE 78 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEET-------------TEEEEEEEEECCSCGG
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeC-------------CcEEEEEEEECCCchh
Confidence 3456789999999999999999999999999888889988777 5666665 6778899999999999
Q ss_pred hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
+..++..+++.+|++|+|||++++.+|+.+..|+..+..... ..++|++||+||+|+.+. +.+..
T Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~ilv~nK~Dl~~~--~~v~~-- 143 (183)
T 3kkq_A 79 FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-----------RESFPMILVANKVDLMHL--RKVTR-- 143 (183)
T ss_dssp GCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-----------SSCCCEEEEEECTTCSTT--CCSCH--
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCcEEEEEECCCchhc--cCcCH--
Confidence 999999999999999999999999999999999999876422 137899999999999865 56663
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeec-cCcCHHHHHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAK-EARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk-~g~~v~~~~~~l~~~l~~ 231 (333)
++++++++.++ ++|+| |||+ +|.|++++|+.+.+.+.+
T Consensus 144 --~~~~~~~~~~~-------~~~~~---------~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 144 --DQGKEMATKYN-------IPYIE---------TSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp --HHHHHHHHHHT-------CCEEE---------EBCSSSCBSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHhC-------CeEEE---------eccCCCCCCHHHHHHHHHHHHhh
Confidence 78899999988 46888 9999 999999999999987764
No 10
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.97 E-value=5.3e-30 Score=217.33 Aligned_cols=167 Identities=25% Similarity=0.467 Sum_probs=146.3
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|++..+...+.++.+.++..+.+.++ +..+.+.||||+|++++.
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~~~~ 78 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS-------------GQKIKLQIWDTAGQERFR 78 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEET-------------TEEEEEEEEECTTGGGTC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-------------CeEEEEEEEECCCChHhh
Confidence 4567999999999999999999999999988888999998888888775 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||+++..+++.+..|+..+..... .++|+++|+||+|+.+. +.+. .
T Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~piilv~nK~Dl~~~--~~~~----~ 140 (179)
T 1z0f_A 79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN------------PNTVIILIGNKADLEAQ--RDVT----Y 140 (179)
T ss_dssp HHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECTTCGGG--CCSC----H
T ss_pred hhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC------------CCCcEEEEEECcccccc--cccC----H
Confidence 9999999999999999999999999999999999988742 37899999999999754 4555 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
++++++++.++ +++++ +||++|.|++++++.+.+.+.+
T Consensus 141 ~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 141 EEAKQFAEENG-------LLFLE---------ASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHTT-------CEEEE---------CCTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHhh
Confidence 77889998877 46888 9999999999999998877643
No 11
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.97 E-value=1.4e-29 Score=220.33 Aligned_cols=169 Identities=24% Similarity=0.405 Sum_probs=149.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|++..+...+.++++.++..+.+.++ +..+.+.||||+|++++..
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~~~~~ 72 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRN-------------DKRIKLQIWDTAGLERYRT 72 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEET-------------TEEEEEEEEEECCSGGGHH
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEEC-------------CeEEEEEEEECCCchhhcc
Confidence 456899999999999999999999999988888899998888888775 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+... +.+. .+
T Consensus 73 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~nK~Dl~~~--~~~~----~~ 134 (203)
T 1zbd_A 73 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW------------DNAQVLLVGNKCDMEDE--RVVS----SE 134 (203)
T ss_dssp HHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC------------SSCEEEEEEECTTCTTS--CCSC----HH
T ss_pred hHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC------------CCCCEEEEEECcccCcc--cccC----HH
Confidence 999999999999999999999999999999999987642 36899999999999765 4555 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
+++++++.++ +++++ |||++|.|++++|+.+++.+.++..
T Consensus 135 ~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~i~~~~~ 174 (203)
T 1zbd_A 135 RGRQLADHLG-------FEFFE---------ASAKDNINVKQTFERLVDVICEKMS 174 (203)
T ss_dssp HHHHHHHHHT-------CEEEE---------CBTTTTBSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-------CeEEE---------EECCCCCCHHHHHHHHHHHHHHHHH
Confidence 7889999887 46777 9999999999999999998887654
No 12
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.97 E-value=5.9e-30 Score=217.41 Aligned_cols=169 Identities=25% Similarity=0.418 Sum_probs=147.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|++..+...+.++.+.++....+.++ +..+.+.||||+|++++.
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~ 72 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEIN-------------GEKVKLQIWDTAGQERFR 72 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEET-------------TEEEEEEEEEETTGGGCS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEEC-------------CEEEEEEEEcCCCchhhh
Confidence 4567999999999999999999999999888889999999988888876 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..++..+|++|+|||++++.+++.+..|+..+.... .++|++||+||+|+... +.+. .
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------~~~p~ilv~nK~Dl~~~--~~~~----~ 133 (181)
T 3tw8_B 73 TITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-------------DDVCRILVGNKNDDPER--KVVE----T 133 (181)
T ss_dssp SCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-------------TTSEEEEEEECTTCGGG--CCSC----H
T ss_pred hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEECCCCchh--cccC----H
Confidence 999999999999999999999999999999999998875 37899999999999865 4455 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
+++..++...+ +++++ +||++|.|++++++.+.+.+.+...
T Consensus 134 ~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 134 EDAYKFAGQMG-------IQLFE---------TSAKENVNVEEMFNCITELVLRAKK 174 (181)
T ss_dssp HHHHHHHHHHT-------CCEEE---------CBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-------CeEEE---------EECCCCCCHHHHHHHHHHHHHHHhh
Confidence 77888998888 46778 9999999999999999998877643
No 13
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.97 E-value=4.7e-30 Score=215.59 Aligned_cols=164 Identities=26% Similarity=0.436 Sum_probs=143.2
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.++ +..+.+.+|||+|++++..
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~G~~~~~~ 70 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-------------DTTVKFEIWDTAGQERYHS 70 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-------------TEEEEEEEEEECCSGGGGG
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-------------CEEEEEEEEeCCCcHHhhh
Confidence 457899999999999999999999999888888899998888888775 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..++..+|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+... +.+. .+
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~iilv~nK~Dl~~~--~~~~----~~ 132 (170)
T 1r2q_A 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS------------PNIVIALSGNKADLANK--RAVD----FQ 132 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC------------TTCEEEEEEECGGGGGG--CCSC----HH
T ss_pred hhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------CCCcEEEEEECccCccc--cccC----HH
Confidence 999999999999999999999999999999999987642 47899999999999764 4455 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+++++++..+ ++|++ +||++|.|++++++.+.+.+
T Consensus 133 ~~~~~~~~~~-------~~~~~---------~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 133 EAQSYADDNS-------LLFME---------TSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp HHHHHHHHTT-------CEEEE---------CCTTTCTTHHHHHHHHHHTS
T ss_pred HHHHHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHH
Confidence 7888888876 46888 99999999999888887643
No 14
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=219.10 Aligned_cols=169 Identities=25% Similarity=0.463 Sum_probs=150.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.++++.++....+.++ +..+.+.||||+|++++.
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~ 79 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD-------------GKTIKLQIWDTAGQERFR 79 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEET-------------TEEEEEEEEEECCSGGGC
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEEC-------------CEEEEEEEEECCCcHhhh
Confidence 3567899999999999999999999999988899999999988888876 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+... +.+. .
T Consensus 80 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~p~ilv~nK~Dl~~~--~~~~----~ 141 (196)
T 3tkl_A 80 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS------------ENVNKLLVGNKCDLTTK--KVVD----Y 141 (196)
T ss_dssp TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECTTCTTT--CCSC----H
T ss_pred hhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC------------CCCCEEEEEECcccccc--cccC----H
Confidence 9999999999999999999999999999999999988753 47899999999999865 4555 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++++++++.++ ++|+| |||++|.|++++|+.+.+.+.++.
T Consensus 142 ~~~~~~~~~~~-------~~~~~---------~Sa~~g~gv~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 142 TTAKEFADSLG-------IPFLE---------TSAKNATNVEQSFMTMAAEIKKRM 181 (196)
T ss_dssp HHHHHHHHHTT-------CCEEE---------ECTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcC-------CcEEE---------EeCCCCCCHHHHHHHHHHHHHHHh
Confidence 77889999888 46888 999999999999999999887653
No 15
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.97 E-value=1.1e-29 Score=217.40 Aligned_cols=170 Identities=23% Similarity=0.416 Sum_probs=149.2
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|++..+...+.++++.++....+.++ +..+.+.||||+|++++.
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~~~~ 73 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVG-------------GKYVKLQIWDTAGQERFR 73 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEET-------------TEEEEEEEEEECCSGGGH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-------------CEEEEEEEEeCCCcHHHH
Confidence 3567999999999999999999999999988888999988888888776 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..++..+|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+... +.+. .
T Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~piilv~nK~Dl~~~--~~~~----~ 135 (186)
T 2bme_A 74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS------------QNIVIILCGNKKDLDAD--REVT----F 135 (186)
T ss_dssp HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECGGGGGG--CCSC----H
T ss_pred HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC------------CCCcEEEEEECcccccc--cccC----H
Confidence 9999999999999999999999999999999999887642 37899999999999754 4555 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++++++++..+ ++|++ |||++|.|++++|+.+.+.+.++..
T Consensus 136 ~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~~~~~ 176 (186)
T 2bme_A 136 LEASRFAQENE-------LMFLE---------TSALTGENVEEAFVQCARKILNKIE 176 (186)
T ss_dssp HHHHHHHHHTT-------CEEEE---------CCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-------CEEEE---------ecCCCCCCHHHHHHHHHHHHHHHhh
Confidence 77888888877 46888 9999999999999999998887643
No 16
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.97 E-value=1e-29 Score=218.88 Aligned_cols=168 Identities=23% Similarity=0.413 Sum_probs=147.8
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.+. +..+.+.||||+|++++.
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~~~~ 85 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRH-------------DKRIKLQIWDTAGQERYR 85 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEET-------------TEEEEEEEEECCSCCSSC
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEEC-------------CeEEEEEEEeCCCcHHHh
Confidence 4567999999999999999999999999888888898988888877765 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..++..+|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+... +.+. .
T Consensus 86 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~nK~Dl~~~--~~~~----~ 147 (189)
T 2gf9_A 86 TITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW------------DNAQVILVGNKCDLEDE--RVVP----A 147 (189)
T ss_dssp CSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECTTCGGG--CCSC----H
T ss_pred hhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------CCCCEEEEEECcccccc--cCCC----H
Confidence 9999999999999999999999999999999999988742 36899999999999765 4555 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++++++++.++ +++++ +||++|.|++++++.+.+.+.++
T Consensus 148 ~~~~~~~~~~~-------~~~~~---------~Sa~~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 148 EDGRRLADDLG-------FEFFE---------ASAKENINVKQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHT-------CEEEE---------CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-------CeEEE---------EECCCCCCHHHHHHHHHHHHHHH
Confidence 77889999887 46778 99999999999999999988764
No 17
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.97 E-value=7.1e-30 Score=220.82 Aligned_cols=169 Identities=22% Similarity=0.347 Sum_probs=145.3
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.+|++.++.. .+.++ +..+.+.||||+|+++|.
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~-------------~~~~~~~i~Dt~G~~~~~ 85 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYK-------------NEEFILHLWDTAGQEEYD 85 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEET-------------TEEEEEEEEEECCSGGGT
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEEC-------------CEEEEEEEEECCCcHHHH
Confidence 4567999999999999999999999999988888998887754 45554 578889999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
.++..+++.+|++|+|||++++.+|+.+ ..|+..+.... .++|++|||||+|+.....+.+..
T Consensus 86 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~p~ilv~nK~Dl~~~~~~~~~~--- 149 (194)
T 3reg_A 86 RLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-------------DTAKTVLVGLKVDLRKDGSDDVTK--- 149 (194)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-------------TTSEEEEEEECGGGCCTTTTCCCH---
T ss_pred HHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEEChhhccCCCCcccH---
Confidence 9999999999999999999999999997 78999988774 379999999999998755466663
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+++.++++.+++. +|+| |||++|.|++++|+.+.+.+.++
T Consensus 150 -~~~~~~~~~~~~~------~~~~---------~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 150 -QEGDDLCQKLGCV------AYIE---------ASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp -HHHHHHHHHHTCS------CEEE---------CBTTTTBSHHHHHHHHHHHHHCS
T ss_pred -HHHHHHHHhcCCC------EEEE---------eecCCCCCHHHHHHHHHHHHHhc
Confidence 8899999999853 2777 99999999999999998877643
No 18
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.97 E-value=3.9e-30 Score=219.45 Aligned_cols=168 Identities=20% Similarity=0.281 Sum_probs=143.2
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.+|.+.++ ...+.++ +..+.+.||||+|++++.
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~l~Dt~G~~~~~ 68 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVN-------------GQEYHLQLVDTAGQDEYS 68 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEET-------------TEEEEEEEEECCCCCTTC
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEEC-------------CEEEEEEEEeCCCchhhh
Confidence 34678999999999999999999999989888889988877 6666665 577899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.+...+++.+|++|+|||++++.+|+.+..|+.++..... ..++|++||+||+|+... +.+..
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~ilv~nK~Dl~~~--~~~~~---- 131 (181)
T 3t5g_A 69 IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-----------KVQIPIMLVGNKKDLHME--RVISY---- 131 (181)
T ss_dssp CCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---------------CCEEEEEECTTCTTT--CCSCH----
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECccchhc--ceecH----
Confidence 8888999999999999999999999999999999877642 237899999999999765 56663
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++++.+++.++ ++|+| +||++|.|++++|+.+++.+.+.
T Consensus 132 ~~~~~~~~~~~-------~~~~~---------~Sa~~~~~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 132 EEGKALAESWN-------AAFLE---------SSAKENQTAVDVFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHTT-------CEEEE---------CCTTSHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhC-------CcEEE---------EecCCCCCHHHHHHHHHHHHHHh
Confidence 88999999987 46888 99999988888888888776553
No 19
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.97 E-value=4.4e-30 Score=222.32 Aligned_cols=172 Identities=23% Similarity=0.447 Sum_probs=140.8
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
..+....+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.++ +..+.+.||||+|++
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELR-------------GKKIRLQIWDTAGQE 86 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEET-------------TEEEEEEEEEECCSG
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEEC-------------CeEEEEEEEeCCCcH
Confidence 4455678999999999999999999999999888888999999988888876 567899999999999
Q ss_pred hhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcc
Q 019959 95 RYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSG 174 (333)
Q Consensus 95 ~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~ 174 (333)
++..++..+++.+|++|+|||+++..+|+.+..|+..+..... .++|++||+||+|+... +.+..
T Consensus 87 ~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~------------~~~piilV~NK~Dl~~~--~~v~~- 151 (192)
T 2il1_A 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS------------EDAELLLVGNKLDCETD--REITR- 151 (192)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECGGGGGG--CCSCH-
T ss_pred HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC------------CCCcEEEEEECcccccc--cccCH-
Confidence 9999999999999999999999999999999999999887642 36899999999999765 45553
Q ss_pred cHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 175 NLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++++++++.+. .++|++ |||++|.|++++++.+.+.+.++
T Consensus 152 ---~~~~~~~~~~~------~~~~~~---------~SA~~g~gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 152 ---QQGEKFAQQIT------GMRFCE---------ASAKDNFNVDEIFLKLVDDILKK 191 (192)
T ss_dssp ---HHHHHHHHTST------TCEEEE---------CBTTTTBSHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHhcC------CCeEEE---------EeCCCCCCHHHHHHHHHHHHHHh
Confidence 67888887643 256777 99999999999999999887653
No 20
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.97 E-value=3.3e-30 Score=224.16 Aligned_cols=171 Identities=18% Similarity=0.230 Sum_probs=138.7
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
+.+....+||+|||++|||||||+++|++..+...+.++.+.++..+.+.++ +..+.+.+|||+|++
T Consensus 17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~l~i~Dt~g~~ 83 (195)
T 3cbq_A 17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVD-------------KEEVTLVVYDIWEQG 83 (195)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEET-------------TEEEEEEEECCCCCS
T ss_pred CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEEC-------------CEEEEEEEEecCCCc
Confidence 4445677999999999999999999998654433445556677777777775 678899999999998
Q ss_pred hhhh-hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 95 RYKD-CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 95 ~~~~-~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
++.. ++..+++.+|++|+|||++++.+|+.+..|+.++..... ..++|++|||||+|+... +.++
T Consensus 84 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~--~~v~- 149 (195)
T 3cbq_A 84 DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-----------HHDLPVILVGNKSDLARS--REVS- 149 (195)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-----------TSCCCEEEEEECTTCTTT--CCSC-
T ss_pred cchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEeechhcccc--CCcC-
Confidence 8765 777889999999999999999999999999999887632 136899999999999865 5565
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.++++++++.++ ++|+| |||++|.|++++|+.+++.+..
T Consensus 150 ---~~~~~~~a~~~~-------~~~~e---------~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 150 ---LEEGRHLAGTLS-------CKHIE---------TSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp ---HHHHHHHHHHTT-------CEEEE---------EBTTTTBSHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHhC-------CEEEE---------EcCCCCCCHHHHHHHHHHHHHH
Confidence 377888998887 46788 9999999999999999887754
No 21
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.4e-30 Score=224.91 Aligned_cols=169 Identities=24% Similarity=0.390 Sum_probs=150.1
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
.....+||+|+|++|||||||+++|+++.+...+.++.+.++..+.+.++ +..+.+.||||+|++++
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~ 85 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRH-------------EKRVKLQIWDTAGQERY 85 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEET-------------TTTEEEEEECHHHHHHC
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEEC-------------CEEEEEEEEeCCChHHH
Confidence 34677999999999999999999999999988888999999988888776 56789999999999999
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
..++..+++.+|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+... +.+.
T Consensus 86 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~nK~Dl~~~--~~~~---- 147 (191)
T 3dz8_A 86 RTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW------------DNAQVILVGNKCDMEEE--RVVP---- 147 (191)
T ss_dssp HHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECTTCGGG--CCSC----
T ss_pred HHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC------------CCCCEEEEEECCCCccc--cccC----
Confidence 99999999999999999999999999999999999988642 47899999999999765 4555
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.++++.+++.++ ++|+| |||++|.|++++|+.+++.+.++
T Consensus 148 ~~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 148 TEKGQLLAEQLG-------FDFFE---------ASAKENISVRQAFERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHHHHT-------CEEEE---------CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-------CeEEE---------EECCCCCCHHHHHHHHHHHHHHh
Confidence 377889999888 46888 99999999999999999988765
No 22
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.97 E-value=1.2e-29 Score=216.01 Aligned_cols=168 Identities=26% Similarity=0.441 Sum_probs=145.0
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
+.+...+||+|+|++|||||||+++|++..+...+.++++.++....+.++ +..+.+.||||+|+++
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~ 73 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVN-------------DATVKFEIWDTAGQER 73 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEET-------------TEEEEEEEEECCCSGG
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEEC-------------CEEEEEEEEeCCCChh
Confidence 345667999999999999999999999999988888899999888888776 5678999999999999
Q ss_pred hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
+..++..+++.+|++|+|||++++.+|+.+..|+..+..... .++|+++|+||+|+... +.+.
T Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~p~i~v~nK~Dl~~~--~~~~--- 136 (181)
T 2efe_B 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN------------PNMVMALAGNKSDLLDA--RKVT--- 136 (181)
T ss_dssp GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC------------TTCEEEEEEECTTCTTT--CCSC---
T ss_pred hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------CCCcEEEEEECCccccc--ccCC---
Confidence 999999999999999999999999999999999999988742 47899999999999765 4555
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.++++++++.++ ++|++ +||++|.|++++++.+.+.+.
T Consensus 137 -~~~~~~~~~~~~-------~~~~~---------~Sa~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 137 -AEDAQTYAQENG-------LFFME---------TSAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp -HHHHHHHHHHTT-------CEEEE---------CCSSSCTTHHHHHHHHHHTCC
T ss_pred -HHHHHHHHHHcC-------CEEEE---------EECCCCCCHHHHHHHHHHHHH
Confidence 377888988877 46788 999999999998888876543
No 23
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=218.73 Aligned_cols=169 Identities=24% Similarity=0.445 Sum_probs=148.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|++..+...+.++++.++..+.+.++ +..+.+.||||+|++++.
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~ 88 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLG-------------TAAVKAQIWDTAGLERYR 88 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEET-------------TEEEEEEEEEESCCCTTC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-------------CEEEEEEEEeCCCchhhh
Confidence 4667999999999999999999999999988888999999888888775 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+... +.+. .
T Consensus 89 ~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~------------~~~piilv~nK~Dl~~~--~~~~----~ 150 (193)
T 2oil_A 89 AITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE------------ATIVVMLVGNKSDLSQA--REVP----T 150 (193)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSC------------TTCEEEEEEECGGGGGG--CCSC----H
T ss_pred hhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------CCCeEEEEEECCCcccc--cccC----H
Confidence 9999999999999999999999999999999999977642 47899999999999765 4454 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++++.+++..+ ++|++ |||++|.|++++++.+.+.+.++.
T Consensus 151 ~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 151 EEARMFAENNG-------LLFLE---------TSALDSTNVELAFETVLKEIFAKV 190 (193)
T ss_dssp HHHHHHHHHTT-------CEEEE---------ECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHHHh
Confidence 77888888877 46777 999999999999999999887654
No 24
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=5.2e-30 Score=221.08 Aligned_cols=167 Identities=15% Similarity=0.177 Sum_probs=135.7
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.+|++.++ ...+.++ +..+.+.||||+|++++.
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~~~~~ 83 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVD-------------HQPVHLRVMDTADLDTPR 83 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEET-------------TEEEEEEEEECCC---CC
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEEC-------------CEEEEEEEEECCCCCcch
Confidence 45679999999999999999999999999888899988776 3445554 577899999999999988
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.+ ..+++.+|++|+|||++++.+|+.+..|+.++...... ...++|++|||||+|+... +.++.
T Consensus 84 ~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~---------~~~~~piilv~nK~Dl~~~--~~v~~---- 147 (187)
T 3c5c_A 84 NC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKE---------TQRSIPALLLGNKLDMAQY--RQVTK---- 147 (187)
T ss_dssp CT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHH---------HCCCCCEEEEEECGGGGGG--CSSCH----
T ss_pred hH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhc---------cCCCCCEEEEEECcchhhc--CccCH----
Confidence 76 56899999999999999999999999999998775210 0026899999999999765 55663
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeee-ccCcCHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAA-KEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SA-k~g~~v~~~~~~l~~~l~ 230 (333)
+++.++++.++ ++|+| ||| ++|.|++++|+.+++.+.
T Consensus 148 ~~~~~~~~~~~-------~~~~e---------~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 148 AEGVALAGRFG-------CLFFE---------VSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHHT-------CEEEE---------CCSSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-------CcEEE---------EeecCccccHHHHHHHHHHHHh
Confidence 78899999988 46888 999 899888888888887664
No 25
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.97 E-value=1.6e-29 Score=215.06 Aligned_cols=168 Identities=15% Similarity=0.168 Sum_probs=136.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+.. +.+|++..+ .+.+.++ +..+.+.||||+|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~~~--- 66 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVD-------------GQTHLVLIREEAGAPD--- 66 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEET-------------TEEEEEEEEECSSSCC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEEC-------------CEEEEEEEEECCCCch---
Confidence 457999999999999999999999998876 777877554 5666665 5778999999999987
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
..+++++|++|+|||++++.+|+.+..|+..+....... ..++|++|||||+|+.....+.+.. +
T Consensus 67 --~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~---------~~~~piilv~nK~Dl~~~~~~~v~~----~ 131 (178)
T 2iwr_A 67 --AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEG---------RGGLALALVGTQDRISASSPRVVGD----A 131 (178)
T ss_dssp --HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSS---------SCCCEEEEEEECTTCBTTBCCCSCH----H
T ss_pred --hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcC---------CCCCCEEEEEECccccccccCcCCH----H
Confidence 357888999999999999999999999876665542211 1378999999999996444466663 7
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
+++++++.++. ++|+| |||++|.|++++|+.+.+.+.+...
T Consensus 132 ~~~~~~~~~~~------~~~~~---------~Sa~~~~~i~~lf~~l~~~~~~~~~ 172 (178)
T 2iwr_A 132 RARALXADMKR------CSYYE---------TXATYGLNVDRVFQEVAQKVVTLRK 172 (178)
T ss_dssp HHHHHHHHHSS------EEEEE---------EBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcC------CeEEE---------EeccccCCHHHHHHHHHHHHHHHHh
Confidence 88889887742 56888 9999999999999999998877543
No 26
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.97 E-value=1.9e-29 Score=220.18 Aligned_cols=168 Identities=24% Similarity=0.441 Sum_probs=148.7
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|++..+...+.++++.++..+.+.++ +..+.+.||||+|++++..
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~~~~~ 72 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELD-------------GKTVKLQIWDTAGQERFRT 72 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEET-------------TEEEEEEEECCTTTTTTTC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEEC-------------CEEEEEEEEeCCChHHHHH
Confidence 457899999999999999999999999988889999999988888876 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..++..+|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+... +.+. .+
T Consensus 73 ~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~nK~Dl~~~--~~~~----~~ 134 (206)
T 2bcg_Y 73 ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT------------STVLKLLVGNKCDLKDK--RVVE----YD 134 (206)
T ss_dssp CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC------------TTCEEEEEEECTTCTTT--CCSC----HH
T ss_pred HHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC------------CCCCEEEEEECCCCccc--cccC----HH
Confidence 999999999999999999999999999999999987642 36899999999999865 4555 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
+++++++..+ ++|++ +||++|.|++++|+.+.+.+.+..
T Consensus 135 ~~~~~~~~~~-------~~~~~---------~Sa~~g~gi~~l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 135 VAKEFADANK-------MPFLE---------TSALDSTNVEDAFLTMARQIKESM 173 (206)
T ss_dssp HHHHHHHHTT-------CCEEE---------CCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHHHH
Confidence 7888988877 46778 999999999999999999887653
No 27
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.97 E-value=2e-29 Score=212.03 Aligned_cols=164 Identities=24% Similarity=0.402 Sum_probs=143.8
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
.+.+||+|+|++|||||||+++|++..+...+.++.+.++....+.+. +..+.+.+|||+|++++..
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dt~G~~~~~~ 70 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQ-------------NELHKFLIWDTAGLERFRA 70 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET-------------TEEEEEEEEEECCSGGGGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEEC-------------CeEEEEEEEcCCCchhhhc
Confidence 356899999999999999999999999888888999998888888776 5678899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
+...++..+|++|+|||++++.+++.+..|+..+..... ..+|+++|+||+|+.+. +.+. .+
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~------------~~~~iilv~nK~Dl~~~--~~v~----~~ 132 (170)
T 1z0j_A 71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP------------PSIVVAIAGNKCDLTDV--REVM----ER 132 (170)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC------------TTSEEEEEEECTTCGGG--CCSC----HH
T ss_pred ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC------------CCCcEEEEEECCccccc--cccC----HH
Confidence 999999999999999999999999999999999988643 47899999999999865 4555 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+++.+++.++ +++++ +||++|.|++++++.+.+.+
T Consensus 133 ~~~~~~~~~~-------~~~~~---------~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 133 DAKDYADSIH-------AIFVE---------TSAKNAININELFIEISRRI 167 (170)
T ss_dssp HHHHHHHHTT-------CEEEE---------CBTTTTBSHHHHHHHHHHHC
T ss_pred HHHHHHHHcC-------CEEEE---------EeCCCCcCHHHHHHHHHHHH
Confidence 7888888876 46788 99999999999998887654
No 28
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.97 E-value=7.3e-30 Score=214.24 Aligned_cols=164 Identities=20% Similarity=0.330 Sum_probs=144.4
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.++ +..+.+.||||+|++++..
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~~~~~ 69 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVN-------------DEDVRLMLWDTAGQEEFDA 69 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEET-------------TEEEEEEEECCTTGGGTTC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEEC-------------CEEEEEEEEcCCCcHhHHH
Confidence 356899999999999999999999999988889999999988888876 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
+...++..+|++|+|||++++.+++.+..|+..+.... .++|+++|+||+|+... +.+. .+
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-------------~~~piilv~nK~Dl~~~--~~~~----~~ 130 (168)
T 1z2a_A 70 ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-------------GDIPTALVQNKIDLLDD--SCIK----NE 130 (168)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-------------CSCCEEEEEECGGGGGG--CSSC----HH
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEECcccCcc--cccC----HH
Confidence 99999999999999999999999999999999987764 26899999999999865 4454 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+++++++.++ +++++ +||++|.|++++++.+.+.+.
T Consensus 131 ~~~~~~~~~~-------~~~~~---------~Sa~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 131 EAEGLAKRLK-------LRFYR---------TSVKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp HHHHHHHHHT-------CEEEE---------CBTTTTBSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-------CeEEE---------EecCCCCCHHHHHHHHHHHHh
Confidence 7888988887 46777 999999999999999988765
No 29
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.97 E-value=9.6e-30 Score=214.19 Aligned_cols=166 Identities=17% Similarity=0.213 Sum_probs=128.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh-h
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD-C 99 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~-~ 99 (333)
.+||+|+|++|||||||+++|++..+......+.+.+...+.+.++ +..+.+.+|||+|++++.. +
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~D~~g~~~~~~~~ 68 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVD-------------KEEVTLIVYDIWEQGDAGGWL 68 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEET-------------TEEEEEEEECCCCC-------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEEC-------------CeEEEEEEEECCCccccchhh
Confidence 5899999999999999999999877766666666777777877776 6788999999999998876 6
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++.+|++|+|||++++++|+.+..|+.++..... ..++|+++|+||+|+.+. +.+. .++
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~ilv~nK~Dl~~~--~~~~----~~~ 131 (169)
T 3q85_A 69 QDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-----------HHDLPVILVGNKSDLARS--REVS----LEE 131 (169)
T ss_dssp -CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-----------TSCCCEEEEEECTTCGGG--CCSC----HHH
T ss_pred hhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhccc-----------CCCCCEEEEeeCcchhhc--ccCC----HHH
Confidence 67778899999999999999999999999999988742 137899999999999865 5566 378
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++++++.++ ++|+| |||++|.|++++|+.+++.+..+
T Consensus 132 ~~~~~~~~~-------~~~~~---------~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 132 GRHLAGTLS-------CKHIE---------TSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHTT-------CEEEE---------CBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcC-------CcEEE---------ecCccCCCHHHHHHHHHHHHHhc
Confidence 889999887 46788 99999999999999999887653
No 30
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.97 E-value=4e-29 Score=214.49 Aligned_cols=180 Identities=22% Similarity=0.383 Sum_probs=148.8
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEE-EEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVG-VKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
.....+||+|+|++|||||||+++|+++.+...+.+|++.++. .+.+.+++... .....+..+.+.||||+|+++
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPD----GAVGRGQRIHLQLWDTAGLER 82 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCC----CSSCCCEEEEEEEEEECCSGG
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcc----cccccCcEEEEEEEeCCCcHH
Confidence 3566799999999999999999999999988888899998887 66666542100 000112378999999999999
Q ss_pred hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
+..+...+++.+|++|+|||++++.+++.+..|+..+..... ..++|++||+||+|+... +.+.
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~--~~~~--- 146 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-----------SENPDIVLCGNKSDLEDQ--RAVK--- 146 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-----------SSSCCEEEEEECTTCGGG--CCSC---
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECcccccc--cccC---
Confidence 999999999999999999999999999999999999987642 137899999999999765 4455
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
.++++++++.++ +++++ |||++|.|++++++.+.+.+.++.
T Consensus 147 -~~~~~~~~~~~~-------~~~~~---------~Sa~~~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 147 -EEEARELAEKYG-------IPYFE---------TSAANGTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp -HHHHHHHHHHHT-------CCEEE---------CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcC-------CCEEE---------EECCCCCCHHHHHHHHHHHHHHHh
Confidence 377888998887 46777 999999999999999999887754
No 31
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.97 E-value=1.6e-29 Score=217.69 Aligned_cols=170 Identities=26% Similarity=0.461 Sum_probs=142.4
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
..+....+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.++ +..+.+.||||+|++
T Consensus 14 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~ 80 (189)
T 1z06_A 14 RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDID-------------GERIKIQLWDTAGQE 80 (189)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEET-------------TEEEEEEEEECCCSH
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEEC-------------CEEEEEEEEECCCch
Confidence 3345567999999999999999999999999988888999999988888876 567899999999999
Q ss_pred hhh-hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 95 RYK-DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 95 ~~~-~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
++. .++..+++.+|++|+|||++++.+|+.+..|+.++..... ..++|++||+||+|+... +.+.
T Consensus 81 ~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~--~~v~- 146 (189)
T 1z06_A 81 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-----------ANDIPRILVGNKCDLRSA--IQVP- 146 (189)
T ss_dssp HHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-----------CSCCCEEEEEECTTCGGG--CCSC-
T ss_pred hhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECcccccc--ceeC-
Confidence 998 8888899999999999999999999999999999988742 137899999999999765 4555
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccC---cCHHHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEA---RYDKEAVMKFFRMLI 230 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g---~~v~~~~~~l~~~l~ 230 (333)
.++++++++.++ ++|++ +||++| .|++++|+.+.+.+.
T Consensus 147 ---~~~~~~~~~~~~-------~~~~~---------~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 147 ---TDLAQKFADTHS-------MPLFE---------TSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp ---HHHHHHHHHHTT-------CCEEE---------CCSSSGGGGSCHHHHHHHHC----
T ss_pred ---HHHHHHHHHHcC-------CEEEE---------EeCCcCCcccCHHHHHHHHHHHHh
Confidence 377888998887 46788 999999 999999998877653
No 32
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.97 E-value=1.3e-29 Score=213.14 Aligned_cols=165 Identities=24% Similarity=0.479 Sum_probs=138.4
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+|+|++|||||||+++|++..+...+.++++.++....+.++ +..+.+.||||+|++++..+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~D~~G~~~~~~~ 68 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN-------------GKKVKLQIWDTAGQERFRTI 68 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESS-------------SCEEEEEEECCTTGGGTSCC
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-------------CEEEEEEEEeCCCChhhhhh
Confidence 45899999999999999999999999988888999988888888775 56789999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++.+|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.. +.+. .++
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~nK~Dl~~---~~~~----~~~ 129 (170)
T 1g16_A 69 TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN------------DEAQLLLVGNKSDMET---RVVT----ADQ 129 (170)
T ss_dssp CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECTTCTT---CCSC----HHH
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------CCCcEEEEEECccCCc---CccC----HHH
Confidence 88999999999999999999999999999999988742 3689999999999943 3444 377
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++++++.++ +++++ +||++|.|++++++.+.+.+.++
T Consensus 130 ~~~~~~~~~-------~~~~~---------~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 130 GEALAKELG-------IPFIE---------SSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHT-------CCEEE---------CBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcC-------CeEEE---------EECCCCCCHHHHHHHHHHHHHHH
Confidence 888998887 46777 99999999999999999887653
No 33
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.97 E-value=4.8e-30 Score=217.87 Aligned_cols=170 Identities=20% Similarity=0.284 Sum_probs=143.0
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.+++ +..+.+.||||+|++++.
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------------~~~~~~~~~Dt~G~~~~~ 70 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPG------------NLNVTLQIWDIGGQTIGG 70 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETT------------TEEEEEEEEECTTCCTTC
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCC------------CCEEEEEEEECCCCcccc
Confidence 34679999999999999999999999988777788999888888888752 356899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcCCCCccCCccCcccH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
.++..+++.+|++|+|||++++.+|+.+..|+..+...... ..+.| ++||+||+|+.+. +.+.
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----------~~~~~~iilv~nK~Dl~~~--~~~~---- 134 (178)
T 2hxs_A 71 KMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEE----------SETQPLVALVGNKIDLEHM--RTIK---- 134 (178)
T ss_dssp TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHH----------HTCCCEEEEEEECGGGGGG--CSSC----
T ss_pred chhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcc----------cCCCCeEEEEEEccccccc--cccC----
Confidence 99999999999999999999999999999999998774210 01345 8999999999765 4555
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.++++++++.++ +++++ |||++|.|++++++.+.+.+.+
T Consensus 135 ~~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 135 PEKHLRFCQENG-------FSSHF---------VSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp HHHHHHHHHHHT-------CEEEE---------ECTTTCTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC-------CcEEE---------EeCCCCCCHHHHHHHHHHHHHh
Confidence 377888998887 46788 9999999999999998877654
No 34
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=2e-29 Score=211.76 Aligned_cols=165 Identities=21% Similarity=0.402 Sum_probs=142.9
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+.+||+|+|++|||||||+++|+++.+...+.++++.++....+.++ +..+.+.+|||+|++++..+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~G~~~~~~~ 68 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTIN-------------EHTVKFEIWDTAGQERFASL 68 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-------------TEEEEEEEEEECCSGGGGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-------------CEEEEEEEEECCCChhhhhh
Confidence 46899999999999999999999999888888999999888888776 56789999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC-CccCcccHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG-TRGSSGNLVD 178 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~-r~v~~~~~~~ 178 (333)
+..+++.+|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+..... +.+. .+
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~piilv~nK~Dl~~~~~~~~v~----~~ 132 (170)
T 1ek0_A 69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS------------KDIIIALVGNKIDXLQEGGERKVA----RE 132 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC------------TTCEEEEEEECGGGGGSSCCCCSC----HH
T ss_pred hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcC------------CCCcEEEEEECCCccccccccCCC----HH
Confidence 99999999999999999999999999999999987742 3789999999999975432 3444 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+++++++..+ ++|++ +||++|.|++++++.+.+.+
T Consensus 133 ~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 133 EGEKLAEEKG-------LLFFE---------TSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp HHHHHHHHHT-------CEEEE---------CCTTTCTTHHHHHHHHHTTS
T ss_pred HHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHH
Confidence 7888888887 46778 99999999999888887543
No 35
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.3e-29 Score=213.09 Aligned_cols=168 Identities=25% Similarity=0.416 Sum_probs=137.3
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
....+||+|+|++|||||||+++|++..+. ..+.+|++.++....+.++ +..+.+.+|||+|++++
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~~~Dt~G~~~~ 73 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVD-------------GVKVKLQMWDTAGQERF 73 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEET-------------TEEEEEEEEECCCC---
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEEC-------------CEEEEEEEEeCCCcHHH
Confidence 456789999999999999999999998885 4677888988888777765 56789999999999999
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
..++..++..+|++|+|||++++.+++.+..|+..+..... .++|++||+||+|+... +.+.
T Consensus 74 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~nK~Dl~~~--~~~~---- 135 (180)
T 2g6b_A 74 RSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ------------HDVALMLLGNKVDSAHE--RVVK---- 135 (180)
T ss_dssp -----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECCSTTSC--CCSC----
T ss_pred HHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC------------CCCcEEEEEECcccCcc--cccC----
Confidence 99999999999999999999999999999999999988642 37899999999999865 4555
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.++++.+++.++ +++++ +||++|.|++++++.+.+.+.++
T Consensus 136 ~~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 136 REDGEKLAKEYG-------LPFME---------TSAKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHHT-------CCEEE---------CCTTTCTTHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHHH
Confidence 377888888887 46777 99999999999999998877543
No 36
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=1.3e-29 Score=217.49 Aligned_cols=168 Identities=22% Similarity=0.311 Sum_probs=140.4
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.+|++.++. +.+.++ +..+.+.||||+|+++|.
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-------------~~~~~~~i~Dt~G~~~~~ 69 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEID-------------TQRIELSLWDTSGSPYYD 69 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECS-------------SCEEEEEEEEECCSGGGT
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEEC-------------CEEEEEEEEECCCChhhh
Confidence 456799999999999999999999999998888888887763 445554 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc----------
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK---------- 166 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~---------- 166 (333)
.++..++..+|++|+|||++++.+|+.+ ..|+..+.... .++|++|||||+|+..+
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-------------~~~piilv~nK~Dl~~~~~~~~~~~~~ 136 (184)
T 1m7b_A 70 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-------------PNTKMLLVGCKSDLRTDVSTLVELSNH 136 (184)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-------------TTCEEEEEEECGGGGGCHHHHHHHHTT
T ss_pred hhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC-------------CCCCEEEEEEcchhhcchhhHhhhhhc
Confidence 9999999999999999999999999998 78999998764 27899999999999742
Q ss_pred cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeec-cCcCHHHHHHHHHHHHHH
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAK-EARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk-~g~~v~~~~~~l~~~l~~ 231 (333)
..+.++ .++++++++.++. ++|+| |||+ +|.|++++|+.+.+.+++
T Consensus 137 ~~~~v~----~~~~~~~~~~~~~------~~~~e---------~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 137 RQTPVS----YDQGANMAKQIGA------ATYIE---------CSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TCCCCC----HHHHHHHHHHHTC------SEEEE---------CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred ccCCCC----HHHHHHHHHHcCC------cEEEE---------eeecCCCcCHHHHHHHHHHHHhc
Confidence 124555 3788999998874 46778 9999 688888888888877653
No 37
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.97 E-value=4.2e-29 Score=211.24 Aligned_cols=167 Identities=23% Similarity=0.240 Sum_probs=131.5
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh--hh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER--YK 97 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~--~~ 97 (333)
..+||+|+|++|||||||+++|++..+...+ ++.+.++..+.+.++ +..+.+.+|||+|++. +.
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~g~~~~~~~ 68 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVD-------------GEDTTLVVVDTWEAEKLDKS 68 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEET-------------TEEEEEEEECCC-------C
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEEC-------------CEEEEEEEEecCCCCccchh
Confidence 4689999999999999999999988775443 356777777777775 5678899999999988 66
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.+...+++.+|++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.+. +.+..
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-----------~~~~piilv~NK~Dl~~~--~~v~~---- 131 (175)
T 2nzj_A 69 WSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-----------ADHVPIILVGNKADLARC--REVSV---- 131 (175)
T ss_dssp HHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC---------------CCEEEEEECTTCTTT--CCSCH----
T ss_pred hhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-----------cCCCCEEEEEEChhhccc--cccCH----
Confidence 7777889999999999999999999999999999887532 136899999999999865 55653
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++++.++..++ ++|+| |||++|.|++++++.+.+.+..+.
T Consensus 132 ~~~~~~~~~~~-------~~~~~---------~Sa~~g~gi~~l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 132 EEGRACAVVFD-------CKFIE---------TSATLQHNVAELFEGVVRQLRLRR 171 (175)
T ss_dssp HHHHHHHHHHT-------SEEEE---------CBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-------CeEEE---------EecCCCCCHHHHHHHHHHHHHHhh
Confidence 77888888877 46888 999999999999999998886543
No 38
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=221.39 Aligned_cols=169 Identities=23% Similarity=0.434 Sum_probs=137.9
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.++ +..+.+.||||+|++++..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~l~Dt~G~~~~~~ 89 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVG-------------GKTVKLQIWDTAGQERFRS 89 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEET-------------TEEEEEEEECCTTHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEEC-------------CeeeEEEEEcCCCcHhHHH
Confidence 567999999999999999999999999888888999988888888776 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+... +.+. .+
T Consensus 90 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~piilv~nK~Dl~~~--~~v~----~~ 151 (200)
T 2o52_A 90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS------------PNIVVILCGNKKDLDPE--REVT----FL 151 (200)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC------------TTCEEEEEEECGGGGGG--CCSC----HH
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC------------CCCcEEEEEECCCcccc--cccC----HH
Confidence 988999999999999999999999999999999887642 37899999999999754 4555 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++.++++..+ ++|++ |||++|.|++++|+.+.+.+.++..
T Consensus 152 ~~~~~~~~~~-------~~~~~---------~SA~~g~gi~~l~~~l~~~i~~~~~ 191 (200)
T 2o52_A 152 EASRFAQENE-------LMFLE---------TSALTGENVEEAFLKCARTILNKID 191 (200)
T ss_dssp HHHHHHHHTT-------CEEEE---------ECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 7888888877 46888 9999999999999999998887643
No 39
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=8.6e-30 Score=221.51 Aligned_cols=171 Identities=22% Similarity=0.378 Sum_probs=133.8
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
+......+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.++ +..+.+.||||+|++
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~Dt~G~~ 88 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVD-------------GERTVLQLWDTAGQE 88 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEET-------------TEEEEEEEEECTTCT
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEEC-------------CEEEEEEEEECCCCc
Confidence 3445667999999999999999999999999888888899988888888776 567889999999999
Q ss_pred hhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc----cCCc
Q 019959 95 RYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK----EGTR 170 (333)
Q Consensus 95 ~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~----~~r~ 170 (333)
++..++..+++.+|++|+|||++++.+++.+..|+..+..... .++|++||+||+|+... ..+.
T Consensus 89 ~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~NK~Dl~~~~~~~~~~~ 156 (199)
T 2p5s_A 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH------------ETVPIMLVGNKADIRDTAATEGQKC 156 (199)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---------------CCEEEEEECGGGHHHHHHTTCCC
T ss_pred chhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcC------------CCCCEEEEEECcccccccccccccc
Confidence 9999999999999999999999999999999999999887642 36899999999999632 1245
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+. .++++.+++..+ ++|+| |||++|.|++++|+.+.+.+.
T Consensus 157 v~----~~~~~~~~~~~~-------~~~~~---------~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 157 VP----GHFGEKLAMTYG-------ALFCE---------TSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp CC----HHHHHHHHHHHT-------CEEEE---------CCTTTCTTHHHHHHHHHHHHT
T ss_pred cC----HHHHHHHHHHcC-------CeEEE---------eeCCCCCCHHHHHHHHHHHHH
Confidence 55 377888998887 46888 999999999999998887664
No 40
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.3e-29 Score=216.42 Aligned_cols=171 Identities=19% Similarity=0.320 Sum_probs=144.6
Q ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 14 ~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
...+....+||+|+|++|||||||+++|+++.+...+.+|++..+ .+.+.++ +..+.+.||||+|+
T Consensus 11 ~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~D~~G~ 76 (194)
T 2atx_A 11 AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVG-------------GKQYLLGLYDTAGQ 76 (194)
T ss_dssp SSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESS-------------SCEEEEEEECCCCS
T ss_pred CCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEEC-------------CEEEEEEEEECCCC
Confidence 334456789999999999999999999999998888888887766 4455554 56789999999999
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc-----
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE----- 167 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~----- 167 (333)
+++..++..+++.+|++|+|||++++.+|+.+. .|+..+.... .++|++||+||+|+....
T Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~piilv~nK~Dl~~~~~~~~~ 143 (194)
T 2atx_A 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-------------PNVPFLLIGTQIDLRDDPKTLAR 143 (194)
T ss_dssp SSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-------------TTCCEEEEEECTTSTTCHHHHHH
T ss_pred cchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEEChhhcccccchhh
Confidence 999999999999999999999999999999997 8999998874 278999999999997642
Q ss_pred -----CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 168 -----GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 168 -----~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.+.+. .+++.++++.+++ .+|+| |||++|.|++++|+.+++.++
T Consensus 144 ~~~~~~~~v~----~~~~~~~~~~~~~------~~~~~---------~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 144 LNDMKEKPIC----VEQGQKLAKEIGA------CCYVE---------CSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp HTTTTCCCCC----HHHHHHHHHHHTC------SCEEE---------CCTTTCTTHHHHHHHHHHHHH
T ss_pred cccccCcccC----HHHHHHHHHHcCC------cEEEE---------eeCCCCCCHHHHHHHHHHHHh
Confidence 13455 4788999999885 25777 999999999999999988765
No 41
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.97 E-value=2.5e-29 Score=213.47 Aligned_cols=169 Identities=22% Similarity=0.303 Sum_probs=144.5
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
++...+||+|+|++|||||||+++|++..+...+.+|++.++. +.+.++ +..+.+.||||+|++++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-------------~~~~~~~~~Dt~G~~~~ 70 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVD-------------GIPARLDILDTAGQEEF 70 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEET-------------TEEEEEEEEECCCTTTT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEEC-------------CEEEEEEEEECCCchhh
Confidence 4567799999999999999999999999998888888887765 556554 56788999999999999
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
..++..++..+|++|+|||++++.++..+..|+.++..... ..++|+++|+||+|+... +.+..
T Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~nK~Dl~~~--~~v~~--- 134 (181)
T 2fn4_A 71 GAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-----------RDDFPVVLVGNKADLESQ--RQVPR--- 134 (181)
T ss_dssp SCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-----------SSCCCEEEEEECGGGGGG--CCSCH---
T ss_pred HHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECcccccc--cccCH---
Confidence 99999999999999999999999999999999999855421 137899999999999865 45553
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++++.++...+ ++|++ +||++|.|++++++.+.+.+.+.
T Consensus 135 -~~~~~~~~~~~-------~~~~~---------~Sa~~~~gv~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 135 -SEASAFGASHH-------VAYFE---------ASAKLRLNVDEAFEQLVRAVRKY 173 (181)
T ss_dssp -HHHHHHHHHTT-------CEEEE---------CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHcC-------CeEEE---------ecCCCCCCHHHHHHHHHHHHHHh
Confidence 77888888876 46788 99999999999999999887654
No 42
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2e-29 Score=217.92 Aligned_cols=164 Identities=26% Similarity=0.427 Sum_probs=144.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.++ +..+.+.||||+|++++..
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~ 87 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCG-------------NELHKFLIWDTAGQERFHS 87 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECS-------------SSEEEEEEEEECCSGGGGG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeC-------------CEEEEEEEEcCCCchhhHh
Confidence 567999999999999999999999999888888999999888888775 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|+.+..|+..+..... .++|+++|+||+|+.+. +.+. .+
T Consensus 88 ~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piiiv~NK~Dl~~~--~~v~----~~ 149 (192)
T 2fg5_A 88 LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP------------ENIVMAIAGNKCDLSDI--REVP----LK 149 (192)
T ss_dssp GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSC------------TTCEEEEEEECGGGGGG--CCSC----HH
T ss_pred hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC------------CCCcEEEEEECcccccc--cccC----HH
Confidence 999999999999999999999999999999999988742 36899999999999754 4555 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+++++++..+ ++|++ |||++|.|++++++.+.+.+
T Consensus 150 ~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 150 DAKEYAESIG-------AIVVE---------TSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp HHHHHHHTTT-------CEEEE---------CBTTTTBSHHHHHHHHHHTC
T ss_pred HHHHHHHHcC-------CEEEE---------EeCCCCcCHHHHHHHHHHHH
Confidence 7888888776 46788 99999999999988887654
No 43
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.96 E-value=5.6e-29 Score=211.07 Aligned_cols=171 Identities=25% Similarity=0.456 Sum_probs=141.6
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.++++.++....+.++ +..+.+.||||+|++++.
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~ 70 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVD-------------GHFVTMQIWDTAGQERFR 70 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEET-------------TEEEEEEEEECCCCGGGH
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEEC-------------CEEEEEEEEeCCCchhhh
Confidence 4567899999999999999999999999888888999999888888876 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||+++..+++.+..|+.++...... ....++|+++|+||+|+.. +.+. .
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--------~~~~~~p~i~v~nK~Dl~~---~~~~----~ 135 (177)
T 1wms_A 71 SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADV--------KEPESFPFVILGNKIDISE---RQVS----T 135 (177)
T ss_dssp HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTC--------SCTTTSCEEEEEECTTCSS---CSSC----H
T ss_pred hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccc--------cccCCCcEEEEEECCcccc---cccC----H
Confidence 99999999999999999999999999999999998765321 0113789999999999973 4455 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
++++++++..+ .+++++ |||++|.|++++++.+.+.+++
T Consensus 136 ~~~~~~~~~~~------~~~~~~---------~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 136 EEAQAWCRDNG------DYPYFE---------TSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHTT------CCCEEE---------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC------CceEEE---------EeCCCCCCHHHHHHHHHHHHHh
Confidence 77888887544 256888 9999999999999998887754
No 44
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.96 E-value=1.1e-29 Score=221.22 Aligned_cols=173 Identities=23% Similarity=0.342 Sum_probs=140.1
Q ss_pred cCCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 13 LNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 13 ~~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
..+.+....+||+|+|++|||||||+++|+++.+...+.+|.+..+ ...+.++ +..+.+.||||+|
T Consensus 16 ~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~l~Dt~G 81 (201)
T 3oes_A 16 FQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLG-------------KDEFHLHLVDTAG 81 (201)
T ss_dssp -------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC-----------------CEEEEEEEECC
T ss_pred CCCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEEC-------------CEEEEEEEEECCC
Confidence 3455567789999999999999999999999999888888888776 5555443 5678899999999
Q ss_pred chhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 93 HERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 93 ~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
++++..++..+++.+|++|+|||++++.+|+.+..|+..+..... ..++|++||+||+|+... +.+.
T Consensus 82 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~--~~v~ 148 (201)
T 3oes_A 82 QDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-----------KTRVPVVLVGNKADLSPE--REVQ 148 (201)
T ss_dssp CCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC----------------CCCEEEEEECTTCGGG--CCSC
T ss_pred ccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECccCccc--cccC
Confidence 999999999999999999999999999999999999999977632 237899999999999865 5565
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
. ++++.+++.++ ++|+| +||++|.|++++|+.+++.+.+.
T Consensus 149 ~----~~~~~~~~~~~-------~~~~~---------~Sa~~~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 149 A----VEGKKLAESWG-------ATFME---------SSARENQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp H----HHHHHHHHHHT-------CEEEE---------CCTTCHHHHHHHHHHHHHHHHHC
T ss_pred H----HHHHHHHHHhC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHhh
Confidence 3 77889999888 46888 99999999999999998887664
No 45
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=4.5e-29 Score=220.35 Aligned_cols=168 Identities=17% Similarity=0.198 Sum_probs=136.0
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCC--CCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGS--SFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
....+||+|||++|||||||+++|++.. +...+ +++|.++..+.+.++ +..+.+.+|||+|++.
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~-------------~~~~~l~~~Dt~g~~~ 99 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVD-------------GESATIILLDMWENKG 99 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEET-------------TEEEEEEEECCTTTTH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEEC-------------CeeeEEEEeecCCCcc
Confidence 3556999999999999999999999643 33333 456778877887776 6788899999999887
Q ss_pred -hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcc
Q 019959 96 -YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSG 174 (333)
Q Consensus 96 -~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~ 174 (333)
+..+...+++.+|++|+|||++++.+|+.+..|+..+..... ..++|+||||||+||... +.+.
T Consensus 100 ~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-----------~~~~piilVgNK~DL~~~--r~v~-- 164 (211)
T 2g3y_A 100 ENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-----------TEDIPIILVGNKSDLVRC--REVS-- 164 (211)
T ss_dssp HHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-----------GTTSCEEEEEECTTCGGG--CCSC--
T ss_pred hhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----------CCCCcEEEEEEChHHhcC--ceEe--
Confidence 566777788999999999999999999999999988876421 136899999999999764 5565
Q ss_pred cHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 175 NLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.++++.++..++ ++|+| |||++|.|++++|+.+++.+..+
T Consensus 165 --~~e~~~~a~~~~-------~~~~e---------~SAk~g~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 165 --VSEGRACAVVFD-------CKFIE---------TSAAVQHNVKELFEGIVRQVRLR 204 (211)
T ss_dssp --HHHHHHHHHHHT-------CEEEE---------CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHHh
Confidence 377888888887 46888 99999999999999999887543
No 46
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.96 E-value=3.7e-29 Score=212.65 Aligned_cols=176 Identities=24% Similarity=0.426 Sum_probs=133.6
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|++..+...+.++++.++....+.+++ +..+.+.||||+|++++.
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~Dt~G~~~~~ 72 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDG------------DKVATMQVWDTAGQERFQ 72 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSS------------SCCEEEEEECCC------
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcC------------CcEEEEEEEECCCChHhh
Confidence 34568999999999999999999999998888889999888888877642 456889999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||++++.+++.+..|+.++....... ...++|+++|+||+|+.... +.+. .
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--------~~~~~p~ilv~nK~Dl~~~~-~~v~----~ 139 (182)
T 1ky3_A 73 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVN--------SPETFPFVILGNKIDAEESK-KIVS----E 139 (182)
T ss_dssp ----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCS--------CTTTCCEEEEEECTTSCGGG-CCSC----H
T ss_pred hhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhccc--------CcCCCcEEEEEECCcccccc-ccCC----H
Confidence 999999999999999999999999999999999987763210 11378999999999996432 3444 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++++++++..+ .+++++ |||++|.|++++++.+.+.+.++.
T Consensus 140 ~~~~~~~~~~~------~~~~~~---------~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 140 KSAQELAKSLG------DIPLFL---------TSAKNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp HHHHHHHHHTT------SCCEEE---------EBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC------CCeEEE---------EecCCCCCHHHHHHHHHHHHHHhh
Confidence 77888887544 256788 999999999999999999887653
No 47
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.96 E-value=1.7e-29 Score=214.24 Aligned_cols=165 Identities=22% Similarity=0.345 Sum_probs=143.6
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
+...+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.++ +..+.+.||||+|++++.
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dt~G~~~~~ 77 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-------------DRTVRLQLWDTAGQERFR 77 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEET-------------TEEEEEEEEEECCSGGGG
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEEC-------------CeEEEEEEEECCCcHHHH
Confidence 4567999999999999999999999999988888999999988888876 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..++..+|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+. +.+. .
T Consensus 78 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~nK~Dl~~~--~~~~----~ 139 (179)
T 2y8e_A 78 SLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG------------SDVIIMLVGNKTDLSDK--RQVS----T 139 (179)
T ss_dssp GGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT------------TSSEEEEEEECGGGGGG--CCSC----H
T ss_pred HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------CCCcEEEEEECCccccc--CcCC----H
Confidence 9999999999999999999999999999999999877632 36899999999999765 4555 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
++++.+++..+ +++++ +||++|.|++++++.+.+.+
T Consensus 140 ~~~~~~~~~~~-------~~~~~---------~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 140 EEGERKAKELN-------VMFIE---------TSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp HHHHHHHHHHT-------CEEEE---------EBTTTTBSHHHHHHHHHHTC
T ss_pred HHHHHHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHH
Confidence 77888888877 46788 99999999999998887654
No 48
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.96 E-value=4.4e-29 Score=209.54 Aligned_cols=164 Identities=17% Similarity=0.196 Sum_probs=117.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+|+|++|||||||+++|++..+. ...++.+.++ .+.+.++ +..+.+.+|||+|++++..++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~-------------~~~~~~~i~D~~g~~~~~~~~ 66 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVD-------------GEEASLMVYDIWEQDGGRWLP 66 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEET-------------TEEEEEEEEECC---------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEEC-------------CEEEEEEEEECCCCccchhhh
Confidence 579999999999999999999976553 3345556555 3455554 678899999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++.+|++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.+. +.+.. +++
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~ilv~nK~Dl~~~--~~~~~----~~~ 129 (166)
T 3q72_A 67 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-----------TDDVPIILVGNKSDLVRS--REVSV----DEG 129 (166)
T ss_dssp ------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC--------------CCCEEEEEECTTCCSS--CCSCH----HHH
T ss_pred hhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEeccccccc--cccCH----HHH
Confidence 9999999999999999999999999999999987632 247899999999999865 55653 778
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+.++...+ ++|+| |||++|.|++++++.+.+.+.++
T Consensus 130 ~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 130 RACAVVFD-------CKFIE---------TSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHTT-------CEEEE---------CBGGGTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-------CcEEE---------eccCCCCCHHHHHHHHHHHHHhc
Confidence 88888887 46888 99999999999999999887654
No 49
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.9e-29 Score=223.50 Aligned_cols=168 Identities=23% Similarity=0.413 Sum_probs=139.1
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|++..+...+.+|++.++..+.+.++ +..+.+.||||+|+++|.
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~ 76 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIE-------------GKRIKAQIWDTAGQERYR 76 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEET-------------TEEEEEEEECCTTTTTTT
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEEC-------------CEEEEEEEEECCCccchh
Confidence 3567999999999999999999999999988888999999988888876 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||++++.+|+.+..|+.++..... .++|++||+||+|+... +.+..
T Consensus 77 ~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~------------~~~piilv~nK~Dl~~~--~~v~~---- 138 (223)
T 3cpj_B 77 AITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD------------DNVAVGLIGNKSDLAHL--RAVPT---- 138 (223)
T ss_dssp CCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--------------CEEEEEECCGGGGGG--CCSCH----
T ss_pred hhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC------------CCCeEEEEEECcccccc--cccCH----
Confidence 9999999999999999999999999999999999987642 36899999999999865 45553
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+++..+++..+ ++|+| +||++|.|++++|+.+.+.+.++
T Consensus 139 ~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 139 EESKTFAQENQ-------LLFTE---------TSALNSENVDKAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHTT-------CEEEE---------CCCC-CCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHHH
Confidence 77888888876 46788 99999999999999998877654
No 50
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.96 E-value=1.4e-28 Score=212.49 Aligned_cols=177 Identities=20% Similarity=0.360 Sum_probs=144.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCC-------CCCCccC---------------
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSG-------SSSNSIK--------------- 76 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~-------~~~~~i~--------------- 76 (333)
...+||+|+|++|||||||+++|++..+...+.+|++.++..+.+.+++.. .++..+.
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 457899999999999999999999999988889999999988888775311 0000000
Q ss_pred --CCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcE
Q 019959 77 --GDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY 154 (333)
Q Consensus 77 --~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pi 154 (333)
......+.+.||||+|++++..++..+++.+|++|+|||++++.+++.+..|+.++.... ++|+
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--------------~~pi 150 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--------------NYII 150 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--------------CCEE
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--------------CCcE
Confidence 011223889999999999999999999999999999999999999999999999998873 4899
Q ss_pred EEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 155 VVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 155 ivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++|+||+| ... +.+. .++++++++..+ +++++ +||++|.|++++++.+.+.+.++
T Consensus 151 ilv~NK~D-~~~--~~~~----~~~~~~~~~~~~-------~~~~~---------~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 151 ILVANKID-KNK--FQVD----ILEVQKYAQDNN-------LLFIQ---------TSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp EEEEECTT-CC---CCSC----HHHHHHHHHHTT-------CEEEE---------ECTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEEECCC-ccc--ccCC----HHHHHHHHHHcC-------CcEEE---------EecCCCCCHHHHHHHHHHHHHHh
Confidence 99999999 322 4455 378889998876 46888 99999999999999999888765
No 51
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=1.1e-28 Score=215.97 Aligned_cols=172 Identities=24% Similarity=0.455 Sum_probs=146.1
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
+.+....+||+|+|++|||||||+++|++..+...+.++++.++....+.++ +..+.+.||||+|++
T Consensus 14 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~ 80 (213)
T 3cph_A 14 GKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN-------------GKKVKLQLWDTAGQE 80 (213)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEET-------------TEEEEEEEECCTTGG
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEEC-------------CEEEEEEEEeCCCcH
Confidence 3445667999999999999999999999999888888999999988888876 567899999999999
Q ss_pred hhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcc
Q 019959 95 RYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSG 174 (333)
Q Consensus 95 ~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~ 174 (333)
++..++..++..+|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+.. +.+.
T Consensus 81 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~nK~Dl~~---~~~~-- 143 (213)
T 3cph_A 81 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN------------DEAQLLLVGNKSDMET---RVVT-- 143 (213)
T ss_dssp GGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT------------TCSEEEEEEECTTCSS---CCSC--
T ss_pred HHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------CCCCEEEEEECCCCcc---cccC--
Confidence 9999989999999999999999999999999999999987742 3689999999999943 4444
Q ss_pred cHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 175 NLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
.++++.+++.++ ++|++ |||++|.|++++++.+.+.+.++..
T Consensus 144 --~~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~~~~~ 185 (213)
T 3cph_A 144 --ADQGEALAKELG-------IPFIE---------SSAKNDDNVNEIFFTLAKLIQEKID 185 (213)
T ss_dssp --HHHHHHHHHHHT-------CCEEE---------CBTTTTBSSHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 377888888887 46777 9999999999999999998876543
No 52
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.96 E-value=5.1e-29 Score=208.86 Aligned_cols=164 Identities=21% Similarity=0.327 Sum_probs=139.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+|+|++|||||||+++|+++.+...+.+|.+..+. +.+.++ +..+.+.+|||+|++++..+
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-------------~~~~~~~l~D~~G~~~~~~~ 67 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVD-------------CQQCMLEILDTAGTEQFTAM 67 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESS-------------SCEEEEEEEEECSSCSSTTH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEEC-------------CEEEEEEEEECCChHHHHHH
Confidence 3589999999999999999999999988888888886653 445544 56889999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++.+|++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.+. +.+. .++
T Consensus 68 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~--~~~~----~~~ 130 (167)
T 1c1y_A 68 RDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-----------TEDVPMILVGNKCDLEDE--RVVG----KEQ 130 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-----------CSCCCEEEEEECTTCGGG--CCSC----HHH
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-----------cCCCcEEEEEECcccccc--ccCC----HHH
Confidence 99999999999999999999999999999998877532 137899999999999765 4555 377
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
++++++.++ .++|++ +||++|.|++++++.+.+.+
T Consensus 131 ~~~~~~~~~------~~~~~~---------~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 131 GQNLARQWC------NCAFLE---------SSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp HHHHHHHTT------SCEEEE---------CBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHcc------CCcEEE---------ecCCCCCCHHHHHHHHHHHH
Confidence 888888874 256888 99999999999999988765
No 53
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.96 E-value=8.3e-29 Score=207.07 Aligned_cols=164 Identities=25% Similarity=0.366 Sum_probs=139.1
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+|+|++|||||||+++|+++.+...+.++.+..+ .+.+.++ +..+.+.||||+|++++..+
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~l~D~~G~~~~~~~ 67 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVD-------------SSPSVLEILDTAGTEQFASM 67 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEET-------------TEEEEEEEEECCCTTCCHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEEC-------------CEEEEEEEEECCCchhhHHH
Confidence 358999999999999999999999988888888876544 5566665 56788999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..++..+|++++|||++++.+++.+..|+.++..... ..++|+++|+||+|+... +.+.. ++
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~--~~~~~----~~ 130 (167)
T 1kao_A 68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-----------YEKVPVILVGNKVDLESE--REVSS----SE 130 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-----------TSCCCEEEEEECGGGGGG--CCSCH----HH
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECCccccc--ccCCH----HH
Confidence 99999999999999999999999999999999887642 137899999999999754 45553 77
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
++++++.++ +++++ +||++|.|++++++.+.+.+.
T Consensus 131 ~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 131 GRALAEEWG-------CPFME---------TSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHT-------SCEEE---------ECTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-------CCEEE---------ecCCCCcCHHHHHHHHHHHHh
Confidence 888888887 46888 999999999888888877664
No 54
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.96 E-value=3.2e-29 Score=220.47 Aligned_cols=181 Identities=23% Similarity=0.445 Sum_probs=148.1
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|++..+...+.+|++.++..+.+.++..+..... .....+.+.||||+|+++|.
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~l~Dt~G~~~~~ 98 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSS---GKAFKVHLQLWDTAGQERFR 98 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC----------CCEEEEEEEEEEEESHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccc---cCceeEEEEEEECCCcHhHH
Confidence 466799999999999999999999999988888889999888888877621100000 01126889999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||+++..+++.+..|+..+..... ..++|++||+||+|+... +.+. .
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~-----------~~~~piilV~NK~Dl~~~--~~v~----~ 161 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY-----------CENPDIVLIGNKADLPDQ--REVN----E 161 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCT-----------TTCCEEEEEEECTTCGGG--CCSC----H
T ss_pred hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-----------cCCCCEEEEEECCccccc--cccC----H
Confidence 9999999999999999999999999999999988765431 137899999999999765 4555 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++++++++.++ ++|++ |||++|.|++++++.+.+.+.++..
T Consensus 162 ~~~~~~~~~~~-------~~~~~---------~Sa~~g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 162 RQARELADKYG-------IPYFE---------TSAATGQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp HHHHHHHHHTT-------CCEEE---------EBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-------CcEEE---------EECCCCCCHHHHHHHHHHHHHHHhh
Confidence 77888998887 46788 9999999999999999999887543
No 55
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=214.03 Aligned_cols=173 Identities=20% Similarity=0.339 Sum_probs=146.1
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
..+....+||+|+|++|||||||+++|+++.+...+.+|.+..+ ...+.++ +..+.+.||||+|++
T Consensus 8 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~l~Dt~G~~ 73 (206)
T 2bov_A 8 GQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLD-------------GEEVQIDILDTAGQE 73 (206)
T ss_dssp ---CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEET-------------TEEEEEEEEECCCTT
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEEC-------------CEEEEEEEEcCCChh
Confidence 34456779999999999999999999999988888888887665 3455554 567889999999999
Q ss_pred hhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcc
Q 019959 95 RYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSG 174 (333)
Q Consensus 95 ~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~ 174 (333)
++..++..++..+|++|+|||+++..+|+.+..|+..+..... ..++|++||+||+|+... +.+.
T Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~--~~~~-- 138 (206)
T 2bov_A 74 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-----------DENVPFLLVGNKSDLEDK--RQVS-- 138 (206)
T ss_dssp CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-----------CSCCCEEEEEECTTCGGG--CCSC--
T ss_pred hhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEeccCcccc--cccc--
Confidence 9999999999999999999999999999999999999988742 237899999999999865 4555
Q ss_pred cHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 175 NLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
.+++.++++.++ ++|++ +||++|.|++++|+.+.+.+..+..
T Consensus 139 --~~~~~~~~~~~~-------~~~~~---------~Sa~~g~gi~~l~~~l~~~i~~~~~ 180 (206)
T 2bov_A 139 --VEEAKNRAEQWN-------VNYVE---------TSAKTRANVDKVFFDLMREIRARKM 180 (206)
T ss_dssp --HHHHHHHHHHHT-------CEEEE---------ECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHHccc
Confidence 377888988887 46777 9999999999999999999887643
No 56
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.96 E-value=4.7e-29 Score=218.75 Aligned_cols=167 Identities=22% Similarity=0.315 Sum_probs=141.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|++..+...+.+|++.++ .+.+.++ +..+.+.||||+|+++|..
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~ 91 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEID-------------TQRIELSLWDTSGSPYYDN 91 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESS-------------SSEEEEEEEEECCSGGGTT
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEEC-------------CEEEEEEEEeCCCcHhhhH
Confidence 4578999999999999999999999999888888888776 3455554 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc----------c
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK----------E 167 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~----------~ 167 (333)
++..+++.+|++|+|||++++.+|+.+ ..|+..+.... .++|++|||||+|+... .
T Consensus 92 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-------------~~~piilv~nK~Dl~~~~~~~~~~~~~~ 158 (205)
T 1gwn_A 92 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-------------PNTKMLLVGCKSDLRTDVSTLVELSNHR 158 (205)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-------------TTCEEEEEEECGGGGGCHHHHHHHHTTT
T ss_pred HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-------------CCCCEEEEEechhhccchhhhhhhcccc
Confidence 999999999999999999999999998 78999998764 27899999999999742 1
Q ss_pred CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeec-cCcCHHHHHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAK-EARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 168 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk-~g~~v~~~~~~l~~~l~~ 231 (333)
.+.++ .++++++++.++. ++|+| |||+ +|.|++++|+.+.+.+++
T Consensus 159 ~~~v~----~~~~~~~~~~~~~------~~~~e---------~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 159 QTPVS----YDQGANMAKQIGA------ATYIE---------CSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CCCCC----HHHHHHHHHHHTC------SEEEE---------CCTTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCCC----HHHHHHHHHHcCC------CEEEE---------eeeccCCcCHHHHHHHHHHHHhh
Confidence 24455 3778999998874 46777 9999 688899998888887764
No 57
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.96 E-value=6.5e-29 Score=215.77 Aligned_cols=173 Identities=20% Similarity=0.266 Sum_probs=135.5
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
+......+||+|+|++|||||||+++|+++.+...+.+|++..+ ...+.++ +..+.+.||||+|++
T Consensus 14 ~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~Dt~G~~ 79 (201)
T 2q3h_A 14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVD-------------GRPVRLQLCDTAGQD 79 (201)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEET-------------TEEEEEEEEECCCST
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEEC-------------CEEEEEEEEECCCCH
Confidence 34466789999999999999999999999988888888887655 4455554 567889999999999
Q ss_pred hhhhhHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc------
Q 019959 95 RYKDCRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE------ 167 (333)
Q Consensus 95 ~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~------ 167 (333)
+|..++..++.++|++|+|||++++.+|+.+. .|+..+.... .++|++||+||+|+....
T Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~p~ilv~nK~Dl~~~~~~~~~~ 146 (201)
T 2q3h_A 80 EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-------------PKAPIILVGTQSDLREDVKVLIEL 146 (201)
T ss_dssp TCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-------------SSSCEEEEEECGGGGGCHHHHHHH
T ss_pred HHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEECHhhhhchhhhhhh
Confidence 99999999999999999999999999999996 7999998874 278999999999997531
Q ss_pred ----CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 168 ----GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 168 ----~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
.+.+. .+++..+++.+++ .+|+| |||++|.|++++|+.+.+.+.+..
T Consensus 147 ~~~~~~~v~----~~~~~~~~~~~~~------~~~~~---------~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 147 DKCKEKPVP----EEAAKLLAEEIKA------ASYIE---------CSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp HTTTCCCCC----HHHHHHHHHHHTC------SEEEE---------CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cccccccCC----HHHHHHHHHhcCC------cEEEE---------EecCCCCCHHHHHHHHHHHHhccc
Confidence 24455 3778899998884 36777 999999999999999998887653
No 58
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.96 E-value=1.1e-28 Score=210.67 Aligned_cols=171 Identities=20% Similarity=0.332 Sum_probs=143.8
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
.....+||+|+|++|||||||+++|++..+...+.+|.+..+ ...+.++ +..+.+.||||+|++++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~l~Dt~G~~~~ 79 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLD-------------GEEVQIDILDTAGQEDY 79 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEET-------------TEEEEEEEEECCCTTCC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEEC-------------CEEEEEEEEECCCCccc
Confidence 345679999999999999999999999988888888877665 3444554 56788999999999999
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
..++..++..+|++|+|||++++.+|+.+..|+.++..... ..++|++||+||+|+.+. +.+.
T Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~--~~~~---- 142 (187)
T 2a9k_A 80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-----------DENVPFLLVGNKSDLEDK--RQVS---- 142 (187)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-----------CTTCCEEEEEECGGGGGG--CCSC----
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECcccccc--CccC----
Confidence 99999999999999999999999999999999999887642 136899999999999765 4455
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
.++++++++.++ ++|++ +||++|.|++++++.+.+.+.++..
T Consensus 143 ~~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~i~~~~~ 184 (187)
T 2a9k_A 143 VEEAKNRAEQWN-------VNYVE---------TSAKTRANVDKVFFDLMREIRARKM 184 (187)
T ss_dssp HHHHHHHHHHTT-------CEEEE---------CCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-------CeEEE---------eCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 377888888877 46777 9999999999999999998877654
No 59
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.96 E-value=8.2e-29 Score=207.30 Aligned_cols=164 Identities=20% Similarity=0.337 Sum_probs=137.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+|+|++|||||||+++|+++.+...+.+|.+..+. ..+.++ +..+.+.||||+|++++..+
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~-------------~~~~~~~l~D~~G~~~~~~~ 68 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLD-------------GEEVQIDILDTAGQEDYAAI 68 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEET-------------TEEEEEEEEECCC---CHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEEC-------------CEEEEEEEEECCCcchhHHH
Confidence 4689999999999999999999999888888888776653 444554 56788999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..++..+|++|+|||++++.+|+.+..|+.++..... ..++|+++|+||+|+.+. +.+. .++
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~--~~~~----~~~ 131 (168)
T 1u8z_A 69 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-----------DENVPFLLVGNKSDLEDK--RQVS----VEE 131 (168)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-----------CTTSCEEEEEECGGGGGG--CCSC----HHH
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCcEEEEEECcccccc--CccC----HHH
Confidence 99999999999999999999999999999999887642 136899999999999765 4455 377
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
++++++..+ +++++ +||++|.|++++++.+.+.+.
T Consensus 132 ~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 132 AKNRADQWN-------VNYVE---------TSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp HHHHHHHHT-------CEEEE---------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-------CeEEE---------eCCCCCCCHHHHHHHHHHHHH
Confidence 888888887 46778 999999999999999988764
No 60
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=8.8e-29 Score=213.10 Aligned_cols=168 Identities=26% Similarity=0.414 Sum_probs=145.9
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|++..+...+.++++.++..+.+.++ +..+.+.||||+|++++.
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~ 78 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVD-------------GNKAKLAIWDTAGQERFR 78 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET-------------TEEEEEEEEEECSSGGGC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEEC-------------CeEEEEEEEeCCCchhhh
Confidence 3456899999999999999999999999988889999999988888776 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||++++.++..+..|+.++..... ..++|++||+||+|+.. +.+. .
T Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~p~ilv~nK~Dl~~---~~~~----~ 140 (195)
T 1x3s_A 79 TLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-----------RNDIVNMLVGNKIDKEN---REVD----R 140 (195)
T ss_dssp CSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-----------CSCCEEEEEEECTTSSS---CCSC----H
T ss_pred hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-----------cCCCcEEEEEECCcCcc---cccC----H
Confidence 9999999999999999999999999999999999877642 13789999999999953 3444 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+++.++++.++ ++|++ |||++|.|++++++.+.+.+...
T Consensus 141 ~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 141 NEGLKFARKHS-------MLFIE---------ASAKTCDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHTT-------CEEEE---------CCTTTCTTHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcC-------CEEEE---------ecCCCCCCHHHHHHHHHHHHHhh
Confidence 77888888877 46777 99999999999999998887653
No 61
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.7e-28 Score=212.68 Aligned_cols=168 Identities=20% Similarity=0.251 Sum_probs=141.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.+|++.++ .+.+.++ +..+.+.||||+|+++ .
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~l~Dt~G~~~-~ 89 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATID-------------DEVVSMEILDTAGQED-T 89 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEET-------------TEEEEEEEEECCCCCC-C
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEEC-------------CEEEEEEEEECCCCCc-c
Confidence 34578999999999999999999999999888888888665 4445554 5678999999999988 7
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||++++.+|+.+..|+..+..... ..++|++||+||+|+... +.+. .
T Consensus 90 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~NK~Dl~~~--~~v~----~ 152 (196)
T 2atv_A 90 IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-----------PKNVTLILVGNKADLDHS--RQVS----T 152 (196)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-----------TSCCCEEEEEECGGGGGG--CCSC----H
T ss_pred cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-----------CCCCcEEEEEECcccccc--cccC----H
Confidence 7788889999999999999999999999999999877532 137899999999999865 5555 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCc-CHHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR-YDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~-~v~~~~~~l~~~l~~~~ 233 (333)
++++++++.++ ++|+| |||++|. |++++|+.+.+.+.++.
T Consensus 153 ~~~~~~~~~~~-------~~~~~---------~Sa~~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 153 EEGEKLATELA-------CAFYE---------CSACTGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHHT-------SEEEE---------CCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-------CeEEE---------ECCCcCCcCHHHHHHHHHHHHHhhc
Confidence 77888988886 46888 9999999 99999999999887653
No 62
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.96 E-value=4.4e-29 Score=217.14 Aligned_cols=171 Identities=22% Similarity=0.332 Sum_probs=108.2
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC--CCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCc--eEEEEEEeCCCch
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG--SSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER--DFFVELWDISGHE 94 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~i~Dt~G~e 94 (333)
...+||+|+|++|||||||+++|++. .+...+.+|++.++..+.+.++ +. .+.+.||||+|++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIP-------------DTTVSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECT-------------TSSEEEEEEEEETTTTH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEEC-------------CcccEEEEEEEECCCcH
Confidence 46789999999999999999999998 8888888998888888888775 44 7899999999999
Q ss_pred hhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC-ccCCccCc
Q 019959 95 RYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA-KEGTRGSS 173 (333)
Q Consensus 95 ~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~-~~~r~v~~ 173 (333)
++..++..+++.+|++|+|||++++.+|+.+..|+..+...... ...++|++||+||+|+.. . +.+.
T Consensus 85 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---------~~~~~piilv~nK~Dl~~~~--~~v~- 152 (208)
T 2yc2_C 85 LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPD---------RERPLRAVLVANKTDLPPQR--HQVR- 152 (208)
T ss_dssp HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSC---------TTSCCEEEEEEECC---------CCC-
T ss_pred HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcc---------cccCCcEEEEEECcccchhh--ccCC-
Confidence 99999999999999999999999999999999999999886420 013789999999999986 4 4555
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeecc-CcCHHHHHHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKE-ARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~-g~~v~~~~~~l~~~l~~~~ 233 (333)
.+++.++++.++ ++|++ |||++ |.|++++++.+.+.+.+..
T Consensus 153 ---~~~~~~~~~~~~-------~~~~~---------~Sa~~~~~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 153 ---LDMAQDWATTNT-------LDFFD---------VSANPPGKDADAPFLSIATTFYRNY 194 (208)
T ss_dssp ---HHHHHHHHHHTT-------CEEEE---------CCC-------CHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcC-------CEEEE---------eccCCCCcCHHHHHHHHHHHHHHHH
Confidence 378899998887 46888 99999 9999999999999887653
No 63
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.96 E-value=2.8e-28 Score=212.32 Aligned_cols=173 Identities=27% Similarity=0.454 Sum_probs=145.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|++..+...+.++++.++....+.++ +..+.+.||||+|++++..
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~~~~~ 72 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-------------DRLVTMQIWDTAGQERFQS 72 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESS-------------SCEEEEEEEEECSSGGGSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEEC-------------CEEEEEEEEeCCCcHHHHH
Confidence 456899999999999999999999999888889999999988888775 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|+.+..|+.++...... ....++|++||+||+|+.. +.+. .+
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--------~~~~~~piilv~nK~Dl~~---~~~~----~~ 137 (207)
T 1vg8_A 73 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASP--------RDPENFPFVVLGNKIDLEN---RQVA----TK 137 (207)
T ss_dssp SCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC--------SSGGGSCEEEEEECTTSSC---CCSC----HH
T ss_pred hHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhccc--------ccCCCCcEEEEEECCCCcc---cccC----HH
Confidence 9889999999999999999999999999999988765310 0013689999999999973 3444 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++..++.... .++|++ +||++|.|++++++.+.+.+.+...
T Consensus 138 ~~~~~~~~~~------~~~~~~---------~Sa~~g~gi~~l~~~l~~~~~~~~~ 178 (207)
T 1vg8_A 138 RAQAWCYSKN------NIPYFE---------TSAKEAINVEQAFQTIARNALKQET 178 (207)
T ss_dssp HHHHHHHHTT------SCCEEE---------CBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC------CceEEE---------EeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 7788877433 256778 9999999999999999999887643
No 64
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.96 E-value=2.3e-28 Score=208.72 Aligned_cols=166 Identities=20% Similarity=0.290 Sum_probs=139.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.+|++..+ ...+.++ +..+.+.||||+|++++..
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~ 68 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD-------------GKPVNLGLWDTAGQEDYDR 68 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEET-------------TEEEEEEEECCCCSGGGTT
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEEC-------------CEEEEEEEEECCCCHhHHH
Confidence 4578999999999999999999999998888888877655 4445554 6788999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc----------
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE---------- 167 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~---------- 167 (333)
++..+++.+|++|+|||++++.+|+.+. .|+..+.... .++|+++|+||+|+....
T Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~piilv~nK~Dl~~~~~~~~~~~~~~ 135 (186)
T 1mh1_A 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-------------PNTPIILVGTKLDLRDDKDTIEKLKEKK 135 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-------------TTSCEEEEEECHHHHTCHHHHHHHHHTT
T ss_pred HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC-------------CCCCEEEEeEcccccccchhhhhhcccc
Confidence 9999999999999999999999999997 7999988764 268999999999997642
Q ss_pred CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 168 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.+.+. .+++..+++.+++ .+|++ |||++|.|++++++.+.+.+.
T Consensus 136 ~~~v~----~~~~~~~~~~~~~------~~~~~---------~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 136 LTPIT----YPQGLAMAKEIGA------VKYLE---------CSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp CCCCC----HHHHHHHHHHTTC------SEEEE---------CCTTTCTTHHHHHHHHHHHHS
T ss_pred cccCC----HHHHHHHHHhcCC------cEEEE---------ecCCCccCHHHHHHHHHHHHh
Confidence 13444 3778889988874 26777 999999999999988887664
No 65
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.96 E-value=2.7e-28 Score=212.56 Aligned_cols=170 Identities=20% Similarity=0.301 Sum_probs=141.3
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
.+.....+||+|+|++|||||||+++|+++.+...+.+|++.++.. .+.++ +..+.+.||||+|++
T Consensus 19 ~~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~-------------~~~~~l~i~Dt~G~~ 84 (201)
T 2gco_A 19 SHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVD-------------GKQVELALWDTAGQE 84 (201)
T ss_dssp ---CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEET-------------TEEEEEEEECCCCSG
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEEC-------------CEEEEEEEEECCCch
Confidence 3445677999999999999999999999999888888888877753 35554 567899999999999
Q ss_pred hhhhhHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC-----
Q 019959 95 RYKDCRSILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG----- 168 (333)
Q Consensus 95 ~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~----- 168 (333)
++..++..+++.+|++|+|||++++.+|+.+ ..|+..+.... .++|++||+||+|+.....
T Consensus 85 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~piilv~nK~Dl~~~~~~~~~~ 151 (201)
T 2gco_A 85 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-------------PNVPIILVGNKKDLRQDEHTRREL 151 (201)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-------------TTCCEEEEEECGGGTTCHHHHHHH
T ss_pred hHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEecHHhhcCccchhhh
Confidence 9999999999999999999999999999998 68998888764 2789999999999976421
Q ss_pred -----CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 169 -----TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 169 -----r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+.+. .+++..+++.+++ .+|+| |||++|.|++++++.+.+.++
T Consensus 152 ~~~~~~~v~----~~~~~~~~~~~~~------~~~~~---------~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 152 AKMKQEPVR----SEEGRDMANRISA------FGYLE---------CSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp HTTTCCCCC----HHHHHHHHHHTTC------SEEEE---------CCTTTCTTHHHHHHHHHHHHH
T ss_pred cccccCcCC----HHHHHHHHHhCCC------cEEEE---------eeCCCCCCHHHHHHHHHHHHh
Confidence 2344 3778889988874 25777 999999999999999888764
No 66
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.96 E-value=6.9e-28 Score=206.22 Aligned_cols=168 Identities=20% Similarity=0.359 Sum_probs=140.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|++..+...+.+|.+. .....+.++ +..+.+.||||+|++++..
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~ 67 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVID-------------GETCLLDILDTAGQEEYSA 67 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCE-EEEEEEEET-------------TEEEEEEEEECCCC---CT
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchh-eEEEEEEEC-------------CcEEEEEEEECCCcHHHHH
Confidence 35689999999999999999999999888888777654 444555554 5778899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..++..+|++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.. +.+. .+
T Consensus 68 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~i~v~nK~Dl~~---~~~~----~~ 129 (189)
T 4dsu_A 68 MRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-----------SEDVPMVLVGNKCDLPS---RTVD----TK 129 (189)
T ss_dssp THHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-----------CSCCCEEEEEECTTSSS---CSSC----HH
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCcEEEEEECccCcc---cccC----HH
Confidence 999999999999999999999999999999999988643 24789999999999974 3344 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
.++.+++.++ ++|++ +||++|.|++++++.+.+.+.....
T Consensus 130 ~~~~~~~~~~-------~~~~~---------~Sa~~g~gi~~l~~~l~~~~~~~~~ 169 (189)
T 4dsu_A 130 QAQDLARSYG-------IPFIE---------TSAKTRQGVDDAFYTLVREIRKHKE 169 (189)
T ss_dssp HHHHHHHHHT-------CCEEE---------CCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHHhhh
Confidence 7888999887 46888 9999999999999999998877543
No 67
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.96 E-value=1.5e-28 Score=215.46 Aligned_cols=168 Identities=18% Similarity=0.305 Sum_probs=139.9
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.+|++..+ ...+.++ +..+.+.||||+|+++|..
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~ 72 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVD-------------GQIVNLGLWDTAGQEDYSR 72 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECS-------------SCEEEEEEECCCCCCCCCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEEC-------------CEEEEEEEEECCCcHHHHH
Confidence 4568999999999999999999999998888888888666 3445554 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC------Ccc
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG------TRG 171 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~------r~v 171 (333)
++..+++.+|++|+|||++++.+|+.+. .|+..+.... .++|++||+||+|+..... +.+
T Consensus 73 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~piilv~nK~Dl~~~~~~~~~~~~~v 139 (212)
T 2j0v_A 73 LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-------------PNVPIVLVGTKLDLRDDKGYLADHTNVI 139 (212)
T ss_dssp --CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-------------TTCCEEEEEECHHHHTCHHHHHTCSSCC
T ss_pred HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEeCHHhhhCccccccccCCC
Confidence 9999999999999999999999999986 8999998874 2789999999999976421 112
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
. .+++.++++.+++ .+|+| |||++|.|++++|+.+.+.+.+.
T Consensus 140 ~----~~~~~~~~~~~~~------~~~~~---------~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 140 T----STQGEELRKQIGA------AAYIE---------CSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp C----HHHHHHHHHHHTC------SEEEE---------CCTTTCTTHHHHHHHHHHHHHCC
T ss_pred C----HHHHHHHHHHcCC------ceEEE---------ccCCCCCCHHHHHHHHHHHHhhh
Confidence 3 3778889998885 36777 99999999999999998877654
No 68
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.96 E-value=4.3e-28 Score=210.25 Aligned_cols=166 Identities=18% Similarity=0.219 Sum_probs=131.8
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC--CCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh-h
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG--SSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER-Y 96 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~-~ 96 (333)
..+||+|||++|||||||+++|++. .+... .++++.++..+.+.++ +..+.+.+|||+|++. +
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~l~~~Dt~~~~~~~ 70 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVD-------------GESATIILLDMWENKGEN 70 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEET-------------TEEEEEEEECCCCC----
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEEC-------------CeEEEEEEEEeccCcchh
Confidence 4689999999999999999999963 34433 3456778877777776 6778899999999876 4
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
..+...+++.+|++|+|||++++.||+.+..|+..+..... ..++|+++||||+|+... +.+.
T Consensus 71 ~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-----------~~~~piilV~NK~Dl~~~--r~v~---- 133 (192)
T 2cjw_A 71 EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-----------TEDIPIILVGNKSDLVRX--REVS---- 133 (192)
T ss_dssp CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-----------TSCCCEEEEEECTTCGGG--CCSC----
T ss_pred hhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-----------CCCCeEEEEEechhhhcc--cccc----
Confidence 55667788899999999999999999999999988876521 136899999999999754 5555
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.++++.++..++ ++|+| |||++|.|++++|+.+++.+...
T Consensus 134 ~~~~~~~a~~~~-------~~~~e---------~SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 134 VSEGRAXAVVFD-------XKFIE---------TSAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp HHHHHHHHHHTT-------CEEEE---------CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-------CceEE---------eccccCCCHHHHHHHHHHHHHhh
Confidence 377888888776 46888 99999999999999999887544
No 69
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.96 E-value=6.6e-29 Score=213.90 Aligned_cols=167 Identities=20% Similarity=0.257 Sum_probs=132.9
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCC-----------CCcccceeEEEEEE-EeCCCCCCCCccCCCCCceEE
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSR-----------PSQTIGCTVGVKHI-TYGSSGSSSNSIKGDSERDFF 84 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~-----------~~~t~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~ 84 (333)
.....+||+|+|++|||||||++.+. +.+... +.+|++.++..+.+ . .++..+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-------------~~~~~~~ 75 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGE-------------VKGFKTR 75 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCC-------------SSSCEEE
T ss_pred ccccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeeccccccc-------------ccCCceE
Confidence 34567999999999999999996555 444443 33466655544433 2 2367889
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECC------CcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEe
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLS------QRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 158 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s------~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVg 158 (333)
+.||||+|+++|..++..+++.+|++|+|||++ +..+|+.+..|+.++.... .++|++||+
T Consensus 76 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~-------------~~~piilv~ 142 (198)
T 3t1o_A 76 FHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTL-------------DDVPIVIQV 142 (198)
T ss_dssp EEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCT-------------TSSCEEEEE
T ss_pred EEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcccc-------------CCCCEEEEE
Confidence 999999999999999999999999999999999 5677888888988874332 479999999
Q ss_pred eCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 159 NKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 159 NK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
||+|+... +. .++++++++.+++ .+|+| |||++|.|++++|+.+.+.+.++.
T Consensus 143 NK~Dl~~~----~~----~~~~~~~~~~~~~------~~~~~---------~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 143 NKRDLPDA----LP----VEMVRAVVDPEGK------FPVLE---------AVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp ECTTSTTC----CC----HHHHHHHHCTTCC------SCEEE---------CBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred Echhcccc----cC----HHHHHHHHHhcCC------ceEEE---------EecCCCcCHHHHHHHHHHHHHHHh
Confidence 99999754 33 3778888887774 16777 999999999999999999888764
No 70
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.96 E-value=2.7e-28 Score=214.86 Aligned_cols=168 Identities=18% Similarity=0.344 Sum_probs=121.7
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.+|++..+ ...+.++ +..+.+.||||+|+++|..
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~l~Dt~G~~~~~~ 97 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVK-------------GKPVHLHIWDTAGQDDYDR 97 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEET-------------TEEEEEEEEEC--------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEEC-------------CEEEEEEEEECCCchhhhH
Confidence 4579999999999999999999999988877888876555 4445554 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc----------
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE---------- 167 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~---------- 167 (333)
++..++..+|++|+|||++++.+|+.+. .|+..+.... .++|++||+||+|+....
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~piilv~nK~Dl~~~~~~~~~~~~~~ 164 (214)
T 2j1l_A 98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-------------KKVPIIVVGCKTDLRKDKSLVNKLRRNG 164 (214)
T ss_dssp -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC-------------SSCCEEEEEECGGGGSCHHHHHHHHHTT
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEEChhhhccchhhhhhcccc
Confidence 9999999999999999999999999996 7999998774 278999999999998642
Q ss_pred CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 168 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.+.++ .++++++++.+++ .+|+| |||++|.|++++|+.+.+.++..
T Consensus 165 ~~~v~----~~~~~~~~~~~~~------~~~~~---------~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 165 LEPVT----YHRGQEMARSVGA------VAYLE---------CSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp CCCCC----HHHHHHHHHHTTC------SEEEE---------CBTTTTBSHHHHHHHHHHHHHHC
T ss_pred cCccc----HHHHHHHHHhcCC------CEEEE---------ecCCCCCCHHHHHHHHHHHHHHh
Confidence 12344 3778899988874 26777 99999999999999999888754
No 71
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.96 E-value=5.7e-29 Score=211.95 Aligned_cols=166 Identities=20% Similarity=0.303 Sum_probs=123.7
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.+|++..+.. .+.+ ++..+.+.||||+|++++..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~-~~~~-------------~~~~~~~~i~Dt~G~~~~~~ 71 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVV-------------NGATVNLGLWDTAGQEDYNR 71 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBC-CCC--------------------CEEECCCC-CTTTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEE-EEEE-------------CCEEEEEEEEECCCChhhhh
Confidence 456899999999999999999999998887777877655422 2222 25677899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC--------C
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG--------T 169 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~--------r 169 (333)
++..+++.+|++|+|||++++.+|+.+. .|+..+.... .++|+++|+||+|+.+... +
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~piilv~nK~Dl~~~~~~~~~~~~~~ 138 (182)
T 3bwd_D 72 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-------------PGVPIVLVGTKLDLRDDKQFFIDHPGAV 138 (182)
T ss_dssp TGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-------------TTCCEEEEEECHHHHTCHHHHHHC--CC
T ss_pred hHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEechhhhcCcccccccccCC
Confidence 9999999999999999999999999997 7999998874 2689999999999976421 1
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.+. .+++.++++.+++ .+|+| |||++|.|++++|+.+.+.++
T Consensus 139 ~v~----~~~~~~~~~~~~~------~~~~~---------~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 139 PIT----TVQGEELKKLIGA------PAYIE---------CSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp CCC----HHHHHHHHHHHTC------SEEEE---------CCTTTCTTHHHHHHHHHHHHS
T ss_pred CCC----HHHHHHHHHHcCC------CEEEE---------EECCCCCCHHHHHHHHHHHHh
Confidence 123 3778899998884 36777 999999999999998887653
No 72
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=5e-28 Score=211.80 Aligned_cols=169 Identities=21% Similarity=0.317 Sum_probs=135.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.+|++.++... +.++ +..+.+.||||+|++++..
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~-------------~~~~~~~i~Dt~G~~~~~~ 88 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVD-------------GKQVELALWDTAGQEDYDR 88 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE-EEET-------------TEEEEEEEEECTTCTTCTT
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEEC-------------CEEEEEEEEECCCcHHHHH
Confidence 3568999999999999999999999998888888888776443 5554 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC---------
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG--------- 168 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~--------- 168 (333)
++..++..+|++|+|||++++.+|+.+ ..|+..+.... .++|+++|+||+|+.....
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~piilv~nK~Dl~~~~~~~~~~~~~~ 155 (207)
T 2fv8_A 89 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-------------PNVPIILVANKKDLRSDEHVRTELARMK 155 (207)
T ss_dssp TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS-------------TTCCEEEEEECGGGGGCHHHHHHHHHTT
T ss_pred HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEEchhhhccccchhhhhhcc
Confidence 999999999999999999999999998 78999888764 2789999999999975411
Q ss_pred -CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 169 -TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 169 -r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
+.+. .+++..++...++ .+|++ |||++|.|++++++.+.+.+++..
T Consensus 156 ~~~v~----~~~~~~~~~~~~~------~~~~~---------~SA~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 156 QEPVR----TDDGRAMAVRIQA------YDYLE---------CSAKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp CCCCC----HHHHHHHHHHTTC------SEEEE---------CCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred cCCCC----HHHHHHHHHhcCC------CEEEE---------eeCCCCCCHHHHHHHHHHHHHHHh
Confidence 2344 3678888888874 25777 999999999999999988876543
No 73
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.95 E-value=2.2e-27 Score=204.14 Aligned_cols=169 Identities=21% Similarity=0.357 Sum_probs=130.9
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
+....+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.++ +..+.+.||||+|++++
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~l~Dt~G~~~~ 82 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVID-------------GETCLLDILDTAGQEEY 82 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEET-------------TEEEEEEEEECCC----
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEEC-------------CEEEEEEEEECCChHHH
Confidence 345679999999999999999999999988777777776554 3455554 56788999999999999
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
..++..++..+|++|+|||+++..+++.+..|+..+..... ..++|+++|+||+|+.. +.+.
T Consensus 83 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~p~ilv~nK~Dl~~---~~~~---- 144 (190)
T 3con_A 83 SAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-----------SDDVPMVLVGNKCDLPT---RTVD---- 144 (190)
T ss_dssp -------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-----------CSCCCEEEEEECTTCSC---CCSC----
T ss_pred HHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-----------CCCCeEEEEEECCcCCc---ccCC----
Confidence 99999999999999999999999999999999999877632 13689999999999976 2344
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
.++++++++.++ +++++ |||++|.|++++++.+.+.+.+..
T Consensus 145 ~~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~~~~ 185 (190)
T 3con_A 145 TKQAHELAKSYG-------IPFIE---------TSAKTRQGVEDAFYTLVREIRQYR 185 (190)
T ss_dssp HHHHHHHHHHHT-------CCEEE---------CCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHHHH
Confidence 377888998887 46777 999999999999999998887643
No 74
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.95 E-value=5.4e-30 Score=222.79 Aligned_cols=164 Identities=25% Similarity=0.475 Sum_probs=132.6
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.++++.++....+.++ +..+.+.||||+|++++..
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~ 97 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD-------------GKTIKLQIWDTAGQERFRT 97 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEET-------------TEEEEEEEECCTTCTTCCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEEC-------------CEEEEEEEEECCCcHhHHH
Confidence 557999999999999999999999999888888898999988888876 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+... +.+.. +
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~p~ilv~nK~Dl~~~--~~v~~----~ 159 (199)
T 3l0i_B 98 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS------------ENVNKLLVGNKCDLTTK--KVVDY----T 159 (199)
T ss_dssp CSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-------------CCSEEEEC-CCSSCC----CCCCS----C
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc------------CCCCEEEEEECccCCcc--ccCCH----H
Confidence 999999999999999999999999999999999977642 47899999999999765 44443 4
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+++.+++.++ ++|++ |||++|.|++++|+.+.+.+
T Consensus 160 ~~~~~~~~~~-------~~~~~---------vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 160 TAKEFADSLG-------IPFLE---------TSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp C-CHHHHTTT-------CCBCC---------CCC---HHHHHHHHHHTTTT
T ss_pred HHHHHHHHcC-------CeEEE---------EECCCCCCHHHHHHHHHHHH
Confidence 5677888777 46888 99999988888887776544
No 75
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.95 E-value=7.2e-28 Score=208.21 Aligned_cols=178 Identities=21% Similarity=0.305 Sum_probs=129.1
Q ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFS-RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 14 ~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
...+....+||+|+|++|||||||+++|++..+.. .+.+|++..+ ..+. ...+.+.||||+|
T Consensus 10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~---------------~~~~~~~i~Dt~G 72 (199)
T 4bas_A 10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFE---------------KGRVAFTVFDMGG 72 (199)
T ss_dssp ------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEE---------------ETTEEEEEEEECC
T ss_pred cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEE---------------eCCEEEEEEECCC
Confidence 34567788999999999999999999999999887 7888888544 3333 2467899999999
Q ss_pred chhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 93 HERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 93 ~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
++++..++..+++.+|++|+|||++++.+|+.+..|+..+....... ...++..++|+|||+||+|+.... .
T Consensus 73 ~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~----~~~~~~~~~piilv~NK~Dl~~~~--~-- 144 (199)
T 4bas_A 73 AKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIR----RELPGGGRVPFLFFANKMDAAGAK--T-- 144 (199)
T ss_dssp SGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHH----SBCTTSCBCCEEEEEECTTSTTCC--C--
T ss_pred CHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhh----hcccccCCCCEEEEEECcCCCCCC--C--
Confidence 99999999999999999999999999999999999998886641100 000111368999999999998652 1
Q ss_pred cccHHHHHHHHHHHcCCCCC--CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPS--SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~--~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
..++.+.+++... ...++|+| |||++|.|++++|+.|.+.+.+.
T Consensus 145 -------~~~~~~~~~~~~~~~~~~~~~~~---------~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 145 -------AAELVEILDLTTLMGDHPFVIFA---------SNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp -------HHHHHHHHTHHHHHTTSCEEEEE---------CBTTTTBTHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHhcchhhccCCeeEEEE---------eeCCCccCHHHHHHHHHHHHHHH
Confidence 1122222221000 01256777 99999999999999999988765
No 76
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.95 E-value=7.6e-29 Score=219.03 Aligned_cols=169 Identities=24% Similarity=0.386 Sum_probs=145.2
Q ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 14 ~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
........+||+|+|++|||||||+++|+.+.+...+.++.|.++....+.++ +..+.+.||||+|+
T Consensus 8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~ 74 (221)
T 3gj0_A 8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-------------RGPIKFNVWDTAGQ 74 (221)
T ss_dssp STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEET-------------TEEEEEEEEEECSG
T ss_pred cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-------------CEEEEEEEEeCCCh
Confidence 34456778999999999999999999988887777788898988888888776 57789999999999
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
+++..++..+++.+|++|+|||++++.+|+.+..|+..+..... ++|++||+||+|+.+.. +.
T Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~p~ilv~nK~Dl~~~~---~~- 137 (221)
T 3gj0_A 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-------------NIPIVLCGNKVDIKDRK---VK- 137 (221)
T ss_dssp GGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-------------TCCEEEEEECTTSSSCS---SC-
T ss_pred HHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-------------CCCEEEEEECCcccccc---cc-
Confidence 99999999999999999999999999999999999999988753 78999999999997642 22
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+++..+++..+ ++|++ |||++|.|++++|+.+.+.+...
T Consensus 138 ----~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 138 ----AKSIVFHRKKN-------LQYYD---------ISAKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp ----GGGCCHHHHHT-------CEEEE---------CBGGGTBTTTHHHHHHHHHHHTC
T ss_pred ----HHHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHhC
Confidence 34556677776 46788 99999999999999999887654
No 77
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.95 E-value=4.6e-28 Score=211.82 Aligned_cols=166 Identities=20% Similarity=0.286 Sum_probs=136.4
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.+|++..+ ...+.++ +..+.+.||||+|++++.
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~~~~~ 92 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD-------------GKPVNLGLWDTAGLEDYD 92 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC--------------CEEEEEEEEECCSGGGT
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEEC-------------CEEEEEEEEECCCchhhH
Confidence 45679999999999999999999999999888888876443 4555554 678889999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC--------
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG-------- 168 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~-------- 168 (333)
.++..+++.+|++|+|||++++.+|+.+. .|+..+.... .++|++||+||+|+.....
T Consensus 93 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~piilv~nK~Dl~~~~~~~~~~~~~ 159 (204)
T 4gzl_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-------------PNTPIILVGTKLDLRDDKDTIEKLKEK 159 (204)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-------------SSCCEEEEEECHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEechhhccchhhhhhhhcc
Confidence 99999999999999999999999999996 8999998874 3789999999999976421
Q ss_pred --CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 169 --TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 169 --r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+.+. .+++..+++.+++ .+|+| |||++|.|++++|+.+.+.+
T Consensus 160 ~~~~v~----~~~~~~~~~~~~~------~~~~~---------~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 160 KLTPIT----YPQGLAMAKEIGA------VKYLE---------CSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TCCCCC----HHHHHHHHHHTTC------SEEEE---------CCTTTCTTHHHHHHHHHHTT
T ss_pred cccccc----HHHHHHHHHhcCC------cEEEE---------eeCCCCCCHHHHHHHHHHHh
Confidence 1244 3778889998885 35777 99999999999999887653
No 78
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=8.4e-28 Score=202.15 Aligned_cols=164 Identities=23% Similarity=0.270 Sum_probs=134.9
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+|+|++|||||||+++|+++.+...+.++++.++. ..+..+ +..+.+.+|||+|++++..+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-------------~~~~~~~~~Dt~G~~~~~~~ 67 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCD-------------KSICTLQITDTTGSHQFPAM 67 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEET-------------TEEEEEEEEECCSCSSCHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEEC-------------CEEEEEEEEECCCchhhHHH
Confidence 3589999999999999999999999887777888776653 334443 56788999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
...++..+|++|+|||++++.+++.+..|+..+..... ...++|+++|+||+|+... +.+.. ++
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~----------~~~~~pii~v~nK~Dl~~~--~~v~~----~~ 131 (172)
T 2erx_A 68 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG----------DVESIPIMLVGNKCDESPS--REVQS----SE 131 (172)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC-------------CCCEEEEEECGGGGGG--CCSCH----HH
T ss_pred HHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC----------CCCCCCEEEEEEccccccc--cccCH----HH
Confidence 99999999999999999999999999999888876521 0136899999999999765 44553 67
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
++.++...+ ++|++ +||++|.|++++++.+.+.+
T Consensus 132 ~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 132 AEALARTWK-------CAFME---------TSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp HHHHHHHHT-------CEEEE---------CBTTTTBSHHHHHHHHHHTC
T ss_pred HHHHHHHhC-------CeEEE---------ecCCCCcCHHHHHHHHHHHH
Confidence 788888877 46778 99999999999998887643
No 79
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.95 E-value=2.5e-27 Score=197.55 Aligned_cols=162 Identities=22% Similarity=0.383 Sum_probs=136.9
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+|+|++|||||||+++|++..+...+.++.+..+ .+.+.++ +..+.+.+|||+|++++..++
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~~~D~~G~~~~~~~~ 68 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVID-------------GETCLLDILDTAGQEEYSAMR 68 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEET-------------TEEEEEEEEECCCCSSCCHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEEC-------------CEEEEEEEEECCCchhhhHHH
Confidence 57999999999999999999999988877777776544 4455554 567889999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..++..+|++|+|||+++..+++.+..|+..+..... ..++|+++|+||+|+... .+. .+++
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-----------~~~~p~iiv~nK~Dl~~~---~~~----~~~~ 130 (166)
T 2ce2_X 69 DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-----------SDDVPMVLVGNKSDLAAR---TVE----SRQA 130 (166)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-----------CSCCCEEEEEECTTCSCC---CSC----HHHH
T ss_pred HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCcEEEEEEchhhhhc---ccC----HHHH
Confidence 9999999999999999999999999999999877632 136899999999999762 333 3778
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+++++.++ +++++ +||++|.|++++++.+.+.+.
T Consensus 131 ~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 131 QDLARSYG-------IPYIE---------TSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp HHHHHHHT-------CCEEE---------ECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHcC-------CeEEE---------ecCCCCCCHHHHHHHHHHHHH
Confidence 88988887 46778 999999999999999988764
No 80
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.95 E-value=1.6e-27 Score=199.64 Aligned_cols=161 Identities=20% Similarity=0.326 Sum_probs=124.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.+.. +.+|++.. ...+.+ ..+.+.||||+|++++..++.
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~---------------~~~~~~i~Dt~G~~~~~~~~~ 62 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEY---------------KNISFTVWDVGGQDKIRPLWR 62 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEEC---------------SSCEEEEEECCCCGGGHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEE---------------CCEEEEEEEcCCChhhHHHHH
Confidence 589999999999999999999888764 56677743 344443 347799999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.++.++|++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.... . .+
T Consensus 63 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~nK~Dl~~~~----~-------~~ 120 (164)
T 1r8s_A 63 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE-----------LRDAVLLVFANKQDLPNAM----N-------AA 120 (164)
T ss_dssp HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-----------GTTCEEEEEEECTTSTTCC----C-------HH
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-----------hcCCeEEEEEECcCCcCCC----C-------HH
Confidence 999999999999999999999999999998876421 1368999999999997541 1 23
Q ss_pred HHHHHcCCCCCC-cCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSS-EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 182 ~~~~~~~~~~~~-~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
++....+..... ..++++| |||++|.|++++++.+.+.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~---------~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 121 EITDKLGLHSLRHRNWYIQA---------TCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp HHHHHTTGGGCSSCCEEEEE---------CBTTTTBTHHHHHHHHHHHC--
T ss_pred HHHHHhCcccccCccEEEEE---------cccCCCcCHHHHHHHHHHHHhh
Confidence 344444421110 1245777 9999999999999998876643
No 81
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.95 E-value=3.8e-28 Score=213.72 Aligned_cols=169 Identities=22% Similarity=0.334 Sum_probs=138.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.+|.+.++....+... .+..+.+.||||+|++++.
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~------------~~~~~~~~l~Dt~G~~~~~ 75 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDD------------QGNVIKFNVWDTAGQEKKA 75 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBT------------TSCEEEEEEEEECSGGGTS
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeC------------CCcEEEEEEEecCCchhhc
Confidence 3457899999999999999999999998888778888877766666543 1445889999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.+...++..+|++|+|||+++..+++.+..|+..+..... .++|++||+||+|+... +.+..
T Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~piilv~nK~Dl~~~--~~~~~---- 137 (218)
T 4djt_A 76 VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG------------NEAPIVVCANKIDIKNR--QKISK---- 137 (218)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC------------SSSCEEEEEECTTCC------CCH----
T ss_pred hHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC------------CCCCEEEEEECCCCccc--cccCH----
Confidence 9999999999999999999999999999999999987743 35899999999999765 44553
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+.+..++...+ ++|++ |||++|.|++++++.+.+.+...
T Consensus 138 ~~~~~~~~~~~-------~~~~~---------~Sa~~g~gv~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 138 KLVMEVLKGKN-------YEYFE---------ISAKTAHNFGLPFLHLARIFTGR 176 (218)
T ss_dssp HHHHHHTTTCC-------CEEEE---------EBTTTTBTTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcC-------CcEEE---------EecCCCCCHHHHHHHHHHHHhcc
Confidence 66667766655 46888 99999999999999998876543
No 82
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.95 E-value=2.5e-27 Score=204.06 Aligned_cols=164 Identities=20% Similarity=0.303 Sum_probs=129.6
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.+|++.++.. +.. ..+.+.||||+|++++.
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~---------------~~~~~~l~Dt~G~~~~~ 81 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITK---------------GNVTIKLWDIGGQPRFR 81 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEE---------------TTEEEEEEEECCSHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEe---------------CCEEEEEEECCCCHhHH
Confidence 3457999999999999999999999999888888888877643 332 35789999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||++++.+|+.+..|+..+..... ..++|++||+||+|+.... .
T Consensus 82 ~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~NK~Dl~~~~----~----- 141 (188)
T 1zd9_A 82 SMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ-----------LQGIPVLVLGNKRDLPGAL----D----- 141 (188)
T ss_dssp TTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-----------GTTCCEEEEEECTTSTTCC----C-----
T ss_pred HHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-----------cCCCCEEEEEECCCCccCC----C-----
Confidence 9999999999999999999999999999999988876421 1378999999999997641 1
Q ss_pred HHHHHHHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
..++.+..+.... ...+++++ |||++|.|++++++.+.+.+
T Consensus 142 --~~~~~~~~~~~~~~~~~~~~~~---------~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 142 --EKELIEKMNLSAIQDREICCYS---------ISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp --HHHHHHHTTGGGCCSSCEEEEE---------CCTTTCTTHHHHHHHHHHTC
T ss_pred --HHHHHHHhChhhhccCCeeEEE---------EECCCCCCHHHHHHHHHHHH
Confidence 2233444432111 11256777 99999999999988887654
No 83
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.95 E-value=7.5e-27 Score=196.56 Aligned_cols=165 Identities=22% Similarity=0.317 Sum_probs=126.8
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+. .+.+|++.. ...+.++ .+.+.+|||+|++++.
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~---------------~~~~~~~Dt~G~~~~~ 65 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFN--VETVTYK---------------NLKFQVWDLGGLTSIR 65 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEE--EEEEEET---------------TEEEEEEEECCCGGGG
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccc--eEEEEEC---------------CEEEEEEECCCChhhh
Confidence 345689999999999999999999988875 456676644 4445443 5779999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||++++.+|..+..|+..+..... ..++|+++|+||+|+.... .
T Consensus 66 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~nK~Dl~~~~--~------- 125 (171)
T 1upt_A 66 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE-----------LRKAILVVFANKQDMEQAM--T------- 125 (171)
T ss_dssp GGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGG-----------GTTCEEEEEEECTTSTTCC--C-------
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-----------hCCCEEEEEEECCCCcCCC--C-------
Confidence 9999999999999999999999999999999988866521 1368999999999997642 1
Q ss_pred HHHHHHHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
..++.+..+.... ...++++| |||++|.|++++++.+.+.+.+
T Consensus 126 --~~~~~~~~~~~~~~~~~~~~~~---------~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 126 --SSEMANSLGLPALKDRKWQIFK---------TSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp --HHHHHHHHTGGGCTTSCEEEEE---------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred --HHHHHHHhCchhccCCceEEEE---------CcCCCCcCHHHHHHHHHHHHhh
Confidence 1222333321100 01246777 9999999999999999887643
No 84
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=5e-27 Score=202.90 Aligned_cols=165 Identities=22% Similarity=0.247 Sum_probs=136.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.+|++.++. ..+.++ +..+.+.||||+|++++..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-------------~~~~~~~l~Dt~G~~~~~~ 71 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCD-------------KSVCTLQITDTTGSHQFPA 71 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEET-------------TEEEEEEEEECCGGGSCHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEEC-------------CEEEEEEEEeCCChHHhHH
Confidence 45689999999999999999999999888778888776553 344443 5678899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..++..+|++|+|||++++.+|+.+..|+..+...... ..++|++||+||+|+.. +.+. .+
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----------~~~~piilv~nK~Dl~~---~~~~----~~ 134 (199)
T 2gf0_A 72 MQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGS----------VEDIPVMLVGNKCDETQ---REVD----TR 134 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSC----------GGGSCEEEEEECTTCSS---CSSC----HH
T ss_pred HHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcC----------CCCCCEEEEEECccCCc---cccC----HH
Confidence 9999999999999999999999999998888877665310 12689999999999975 3344 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
++..++..++ ++|++ +||++|.|++++++.+.+.+.
T Consensus 135 ~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 135 EAQAVAQEWK-------CAFME---------TSAKMNYNVKELFQELLTLET 170 (199)
T ss_dssp HHHHHHHHHT-------CEEEE---------CBTTTTBSHHHHHHHHHHHCS
T ss_pred HHHHHHHHhC-------CeEEE---------EecCCCCCHHHHHHHHHHHHh
Confidence 7888888887 46777 999999999999988877543
No 85
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.95 E-value=6.8e-27 Score=200.31 Aligned_cols=165 Identities=17% Similarity=0.263 Sum_probs=128.8
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++. ...+.+|++.. .+.+.++ .+.+.+|||+|++++..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~---------------~~~~~~~Dt~G~~~~~~ 77 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHR---------------GFKLNIWDVGGQKSLRS 77 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEET---------------TEEEEEEEECCSHHHHT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEEC---------------CEEEEEEECCCCHhHHH
Confidence 456899999999999999999999887 66777787744 4455443 47899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|+.+..|+.++..... ..++|+++|+||+|+.... .
T Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~nK~Dl~~~~--~-------- 136 (186)
T 1ksh_A 78 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER-----------LAGATLLIFANKQDLPGAL--S-------- 136 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-----------GTTCEEEEEEECTTSTTCC--C--------
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-----------cCCCcEEEEEeCccCCCCC--C--------
Confidence 999999999999999999999999999999988876521 1368999999999997642 1
Q ss_pred HHHHHHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 179 ~~~~~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
..++.+.+++... ...++++| |||++|.|++++++.+.+.+.++
T Consensus 137 -~~~~~~~~~~~~~~~~~~~~~~---------~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 137 -CNAIQEALELDSIRSHHWRIQG---------CSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp -HHHHHHHTTGGGCCSSCEEEEE---------CCTTTCTTHHHHHHHHHHHHHTC
T ss_pred -HHHHHHHhChhhccCCceEEEE---------eeCCCCCCHHHHHHHHHHHHHhc
Confidence 1222333332100 11356777 99999999999999998887654
No 86
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.95 E-value=4.3e-27 Score=201.66 Aligned_cols=165 Identities=19% Similarity=0.294 Sum_probs=125.4
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
+...+||+|+|++|||||||+++|++..+ ..+.+|+|.. .+.+.++ .+.+.+|||+|++++.
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~---------------~~~l~i~Dt~G~~~~~ 74 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN--IKSVQSQ---------------GFKLNVWDIGGQRKIR 74 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE--EEEEEET---------------TEEEEEEECSSCGGGH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE--EEEEEEC---------------CEEEEEEECCCCHHHH
Confidence 35679999999999999999999998755 3456677743 4445442 4789999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||++++.+|+.+..|+.++..... ..++|+++|+||+|+.... .
T Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~NK~Dl~~~~--~------- 134 (181)
T 1fzq_A 75 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-----------LSCVPVLIFANKQDLLTAA--P------- 134 (181)
T ss_dssp HHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-----------GTTCCEEEEEECTTSTTCC--C-------
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-----------hcCCCEEEEEECcCcccCC--C-------
Confidence 9999999999999999999999999999999988754311 1368999999999997642 1
Q ss_pred HHHHHHHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
..++.+.+++... ...++|+| |||++|.|++++|+.+.+.+.+
T Consensus 135 --~~~~~~~~~~~~~~~~~~~~~~---------~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 135 --ASEIAEGLNLHTIRDRVWQIQS---------CSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp --HHHHHHHTTGGGCCSSCEEEEE---------CCTTTCTTHHHHHHHHHHTC--
T ss_pred --HHHHHHHhCchhccCCceEEEE---------ccCCCCCCHHHHHHHHHHHHHh
Confidence 1233333332110 11246777 9999999999999998876543
No 87
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.94 E-value=7.4e-28 Score=206.87 Aligned_cols=172 Identities=20% Similarity=0.372 Sum_probs=117.6
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcC--CCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKG--SSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
.+||+|+|++|||||||+++|++. .+...+.+|+|.++....+.+.. .++..+.+.+|||+|+++|..
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~----------~~~~~~~~~i~Dt~G~~~~~~ 71 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRD----------KRKRDLVLNVWDFAGREEFYS 71 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC-------------------CEEEEEEECSHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeecccc----------CCCCceEEEEEecCCCHHHHH
Confidence 479999999999999999999984 56667788889888766654321 113567899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCc-ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 99 CRSILYSQINGVIFVHDLSQR-RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~-~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
++..+++++|++++|||++++ .+|+.+..|+.++.... .++|++|||||+|+... +.+.. ...
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-------------~~~piilv~nK~Dl~~~--~~~~~-~~~ 135 (184)
T 2zej_A 72 THPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-------------SSSPVILVGTHLDVSDE--KQRKA-CMS 135 (184)
T ss_dssp TSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC-------------TTCEEEEEEECGGGCCH--HHHHH-HHH
T ss_pred hhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC-------------CCCcEEEEEECCCcccc--hhhHH-HHH
Confidence 999999999999999999998 58999999999987763 26899999999999764 22210 001
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCc-CHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR-YDKEAVMKFFRMLI 230 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~-~v~~~~~~l~~~l~ 230 (333)
+.+..+++.+++... .+|+| +||++|. +++++++.+.+.+.
T Consensus 136 ~~~~~~~~~~~~~~~---~~~~~---------~Sa~~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 136 KITKELLNKRGFPAI---RDYHF---------VNATEESDALAKLRKTIINESL 177 (184)
T ss_dssp HHHHHTTTCTTSCEE---EEEEE---------CCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcch---hheEE---------EecccCchhHHHHHHHHHHHHh
Confidence 233444444442100 12777 9999996 66666666665543
No 88
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.94 E-value=3.5e-27 Score=204.31 Aligned_cols=163 Identities=20% Similarity=0.305 Sum_probs=122.1
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+. .+.+|++ +..+.+.+ ..+.+.||||+|++++.
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~---------------~~~~~~i~Dt~G~~~~~ 87 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEY---------------KNICFTVWDVGGQDKIR 87 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEE---------------TTEEEEEEECC-----C
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEE---------------CCEEEEEEECCCCHhHH
Confidence 345689999999999999999999988875 3566666 33444544 24789999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||++++.+|+.+..|+..+..... ..++|++||+||+|+....
T Consensus 88 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~-----------~~~~piilv~NK~Dl~~~~---------- 146 (192)
T 2b6h_A 88 PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDE-----------LRDAVLLVFANKQDMPNAM---------- 146 (192)
T ss_dssp TTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-----------GTTCEEEEEEECTTSTTCC----------
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccc-----------cCCCeEEEEEECCCCCCCC----------
Confidence 9999999999999999999999999999999998876421 1368999999999997541
Q ss_pred HHHHHHHHHcCCCCCC-cCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSS-EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~-~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
..+++++..+..... ..++++| |||++|.|++++++.+.+.+
T Consensus 147 -~~~~i~~~~~~~~~~~~~~~~~~---------~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 147 -PVSELTDKLGLQHLRSRTWYVQA---------TCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp -CHHHHHHHTTGGGCSSCCEEEEE---------CBTTTTBTHHHHHHHHHHHT
T ss_pred -CHHHHHHHhCcccccCCceEEEE---------CcCCCcCCHHHHHHHHHHHH
Confidence 123444444432111 1245777 99999999999999988765
No 89
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=1.1e-26 Score=199.61 Aligned_cols=163 Identities=19% Similarity=0.261 Sum_probs=121.8
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+. .+.+|++.+ ...+.++ .+.+.||||+|++++..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 75 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVIN---------------NTRFLMWDIGGQESLRS 75 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEET---------------TEEEEEEECCC----CG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEEC---------------CEEEEEEECCCCHhHHH
Confidence 34689999999999999999999988876 566777644 3444443 37899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|+.+..|+.++..... ..++|+++|+||+|+.... . .+
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~NK~Dl~~~~----~----~~ 136 (187)
T 1zj6_A 76 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-----------LRKAGLLIFANKQDVKECM----T----VA 136 (187)
T ss_dssp GGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG-----------GTTCEEEEEEECTTSTTCC----C----HH
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh-----------hCCCeEEEEEECCCCcCCC----C----HH
Confidence 999999999999999999999999999999999877521 1368999999999997531 1 13
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
++.+......+. ...++++| |||++|.|++++++.+.+.+
T Consensus 137 ~i~~~~~~~~~~--~~~~~~~~---------~Sa~~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 137 EISQFLKLTSIK--DHQWHIQA---------CCALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp HHHHHHTGGGCC--SSCEEEEE---------CBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHhChhhhc--CCCcEEEE---------ccCCCCcCHHHHHHHHHHHH
Confidence 333322211111 01256777 99999999999998887765
No 90
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.94 E-value=5.4e-27 Score=200.61 Aligned_cols=167 Identities=18% Similarity=0.194 Sum_probs=123.5
Q ss_pred cCCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 13 LNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 13 ~~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
....+....+||+|+|++|||||||+++|+++.+ ..+.+|++.++ +.+.++ .+.+.||||+|
T Consensus 13 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~---------------~~~~~i~Dt~G 74 (181)
T 2h17_A 13 GLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVIN---------------NTRFLMWDIGG 74 (181)
T ss_dssp --------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEET---------------TEEEEEEEESS
T ss_pred CccCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEEC---------------CEEEEEEECCC
Confidence 3455567789999999999999999999999887 55667777544 444443 37899999999
Q ss_pred chhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 93 HERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 93 ~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
++++..++..+++.+|++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.... .
T Consensus 75 ~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~NK~Dl~~~~----~ 139 (181)
T 2h17_A 75 QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-----------LRKAGLLIFANKQDVKECM----T 139 (181)
T ss_dssp SGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGG-----------GTTCEEEEEEECTTSTTCC----C
T ss_pred CHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChh-----------hCCCeEEEEEECCCcccCC----C
Confidence 999999999999999999999999999999999999988876421 1378999999999997531 1
Q ss_pred cccHHHHHHHHHHHcCCCCCC-cCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSS-EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~-~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.++. .+..+..... ..++++| |||++|.|++++++.+.+.
T Consensus 140 ----~~~i---~~~~~~~~~~~~~~~~~~---------~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 140 ----VAEI---SQFLKLTSIKDHQWHIQA---------CCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp ----HHHH---HHHTTGGGCCSSCEEEEE---------CBTTTTBTHHHHHHHHHTC
T ss_pred ----HHHH---HHHhCcccccCCceEEEE---------ccCCCCcCHHHHHHHHHhh
Confidence 1222 2222211100 1246777 9999999999999888653
No 91
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.94 E-value=4.8e-27 Score=204.54 Aligned_cols=164 Identities=18% Similarity=0.223 Sum_probs=119.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
.+.+||+|+|++|||||||+++|+++.+. .+.+|++.+. ..+.++ .+.+.+|||+|++++..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~---------------~~~l~i~Dt~G~~~~~~ 84 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIA---------------GMTFTTFDLGGHIQARR 84 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEET---------------TEEEEEEEECC----CC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEEC---------------CEEEEEEECCCcHhhHH
Confidence 45679999999999999999999988764 4566776653 455553 27899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|+.+..|+.++..... ..++|+++|+||+|+.. .++ .+
T Consensus 85 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~NK~Dl~~----~~~----~~ 145 (198)
T 1f6b_A 85 VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDET-----------IANVPILILGNKIDRPE----AIS----EE 145 (198)
T ss_dssp GGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-----------GTTSCEEEEEECTTSTT----CCC----HH
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-----------cCCCcEEEEEECCCccc----cCC----HH
Confidence 999999999999999999999999999999999876521 13789999999999975 233 25
Q ss_pred HHHHHHHHcC---------CCC-CCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 179 AARQWVEKQG---------LLP-SSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 179 ~~~~~~~~~~---------~~~-~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
++++++.... +.. ....++|+| |||++|.|++++|+.+.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 146 RLREMFGLYGQTTGKGSVSLKELNARPLEVFM---------CSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp HHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEE---------CBTTTTBSHHHHHHHHHTT
T ss_pred HHHHHhCcccccccccccccccccCceEEEEE---------EECCCCCCHHHHHHHHHHh
Confidence 5666554322 100 011245677 9999999999999888653
No 92
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.94 E-value=2.2e-27 Score=205.92 Aligned_cols=173 Identities=16% Similarity=0.130 Sum_probs=122.6
Q ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 14 ~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
...++.+.+||+|+|++|||||||++++.+. +... ++++.++..+.+...- .++..+.+.||||+|+
T Consensus 13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~l~i~Dt~G~ 79 (196)
T 3llu_A 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDI----------SNSSFVNFQIWDFPGQ 79 (196)
T ss_dssp -------CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEE----------CCTTSCCEEEEECCSS
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeec----------cCCCeeEEEEEECCCC
Confidence 3556778899999999999999999988764 3332 4555555544443210 1145678999999999
Q ss_pred hhhhhhH---HhhccCCcEEEEEEECCCc--ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc-
Q 019959 94 ERYKDCR---SILYSQINGVIFVHDLSQR--RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE- 167 (333)
Q Consensus 94 e~~~~~~---~~~~~~ad~vIlV~D~s~~--~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~- 167 (333)
++|.... ..+++++|++|+|||+++. +++..+..|+.++.... .++|++|||||+|+...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-------------~~~piilv~nK~Dl~~~~~ 146 (196)
T 3llu_A 80 MDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-------------PDMNFEVFIHKVDGLSDDH 146 (196)
T ss_dssp CCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-------------TTCEEEEEEECGGGSCHHH
T ss_pred HHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-------------CCCcEEEEEeccccCchhh
Confidence 9998777 7899999999999999998 66777777888775543 379999999999987532
Q ss_pred ----CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 168 ----GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 168 ----~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+.+. .+.+.++++...-. ..++|+| |||++ .|++++|+.+++.+
T Consensus 147 ~~~~~~~v~----~~~~~~~~~~~~~~---~~~~~~e---------~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 147 KIETQRDIH----QRANDDLADAGLEK---LHLSFYL---------TSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHHH----HHHHHHHHHTTCTT---SCEEEEE---------ECTTS-THHHHHHHHHHHHT
T ss_pred hhHHHhHHH----HHHHHHHHHhhhhc---CCcceEE---------EEech-hhHHHHHHHHHHHh
Confidence 12333 25566676632100 0257888 99999 99999999998765
No 93
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.94 E-value=5.4e-26 Score=197.59 Aligned_cols=167 Identities=25% Similarity=0.451 Sum_probs=142.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+|+|++|||||||+++|++..+...+.+|++.++....+.++ +..+.+.+||++|++++..+
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~-------------g~~~~~~i~Dt~g~~~~~~~ 70 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-------------GKTIKAQIWDTAGQERYRRI 70 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEET-------------TEEEEEEEEECSSGGGTTCC
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-------------CEEEEEEEEECCCchhhhhh
Confidence 46899999999999999999999999888888999998888888876 67788999999999999888
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
...++..++++|+|||+++..+|+++..|+..+..... .+.|+++|+||+|+.+. +.+. .++
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~i~~v~nK~Dl~~~--~~~~----~~~ 132 (199)
T 2f9l_A 71 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD------------SNIVIMLVGNKSDLRHL--RAVP----TDE 132 (199)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECTTCGGG--CCSC----HHH
T ss_pred hHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC------------CCCeEEEEEECcccccc--cCcC----HHH
Confidence 88889999999999999999999999999988876532 36899999999999765 4444 377
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++.++...+ +++++ |||+++.|++++++.+.+.+.+..
T Consensus 133 a~~l~~~~~-------~~~~d---------~Sal~~~~i~~l~~~l~~~~~~~~ 170 (199)
T 2f9l_A 133 ARAFAEKNN-------LSFIE---------TSALDSTNVEEAFKNILTEIYRIV 170 (199)
T ss_dssp HHHHHHHTT-------CEEEE---------CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHHHH
Confidence 888998877 45777 999999999999999999887654
No 94
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.7e-26 Score=198.86 Aligned_cols=167 Identities=19% Similarity=0.240 Sum_probs=128.2
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGS-SFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
....+||+|+|++|||||||+++|++.. +...+.+|++ +....+.++ .+.+.||||+|++++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 80 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSS---------------SLSFTVFDMSGQGRY 80 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECS---------------SCEEEEEEECCSTTT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEEC---------------CEEEEEEECCCCHHH
Confidence 4567899999999999999999999887 5667777777 344555543 367999999999999
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
..++..++..+|++|+|||++++.+|+.+..|+..+...... ...++|++||+||+|+... +.
T Consensus 81 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~---------~~~~~piilv~nK~Dl~~~----~~---- 143 (190)
T 2h57_A 81 RNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDI---------KHRRIPILFFANKMDLRDA----VT---- 143 (190)
T ss_dssp GGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTT---------TTSCCCEEEEEECTTSTTC----CC----
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhh---------ccCCCeEEEEEeCcCcccC----CC----
Confidence 999999999999999999999999999999999998776321 0136899999999999753 12
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+++.+++....+.. ..+++++ |||++|.|++++++.+.+.+
T Consensus 144 ~~~~~~~~~~~~~~~--~~~~~~~---------~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 144 SVKVSQLLCLENIKD--KPWHICA---------SDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp HHHHHHHHTGGGCCS--SCEEEEE---------CBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHhChhhccC--CceEEEE---------ccCCCCcCHHHHHHHHHHHH
Confidence 244444442111110 1256777 99999999999999888765
No 95
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.94 E-value=2.8e-26 Score=198.22 Aligned_cols=163 Identities=17% Similarity=0.206 Sum_probs=123.7
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
.+.+||+|+|++|||||||+++|+++.+. .+.+|++.+ ...+.++ .+.+.+|||+|++++..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 82 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIG---------------NIKFTTFDLGGHIQARR 82 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEET---------------TEEEEEEECCCSGGGTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEEC---------------CEEEEEEECCCCHHHHH
Confidence 34579999999999999999999988874 466777764 4455553 27899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|+.+..|+.++..... ..++|+++|+||+|+... ++ .+
T Consensus 83 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~NK~Dl~~~----~~----~~ 143 (190)
T 1m2o_B 83 LWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAE-----------LKDVPFVILGNKIDAPNA----VS----EA 143 (190)
T ss_dssp SGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-----------GTTCCEEEEEECTTSTTC----CC----HH
T ss_pred HHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchh-----------hcCCCEEEEEECCCCcCC----CC----HH
Confidence 999999999999999999999999999999999876421 136899999999999752 22 24
Q ss_pred HHHHHHHHcCC-----CCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 179 AARQWVEKQGL-----LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 179 ~~~~~~~~~~~-----~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
++.+++..... ......++|+| |||++|.|++++++.+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 144 ELRSALGLLNTTGSQRIEGQRPVEVFM---------CSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp HHHHHTTCSSCCC---CCSSCCEEEEE---------CBTTTTBSHHHHHHHHHT
T ss_pred HHHHHhCCccccccccccccceEEEEE---------eECCcCCCHHHHHHHHHh
Confidence 44443322110 00011356777 999999999999988865
No 96
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=1.3e-26 Score=197.63 Aligned_cols=165 Identities=19% Similarity=0.316 Sum_probs=124.9
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+ ..+.+|++.. ...+.++ .+.+.+|||+|++++..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 77 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYK---------------NLKLNVWDLGGQTSIRP 77 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEET---------------TEEEEEEEEC----CCT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEEC---------------CEEEEEEECCCCHhHHH
Confidence 5678999999999999999999998877 5566777744 3444443 37899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..++..+|++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.... .
T Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~nK~Dl~~~~----~------ 136 (183)
T 1moz_A 78 YWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE-----------LQDAALLVFANKQDQPGAL----S------ 136 (183)
T ss_dssp TGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSST-----------TSSCEEEEEEECTTSTTCC----C------
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-----------hCCCeEEEEEECCCCCCCC----C------
Confidence 999999999999999999999999999999988866531 1378999999999997541 1
Q ss_pred HHHHHHHHcCCCCCC-cCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSS-EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~-~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
..++.+..+..... ..+++++ |||++|.|++++++.+.+.+.++
T Consensus 137 -~~~i~~~~~~~~~~~~~~~~~~---------~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 137 -ASEVSKELNLVELKDRSWSIVA---------SSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp -HHHHHHHTTTTTCCSSCEEEEE---------EBGGGTBTHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHhCcccccCCceEEEE---------ccCCCCcCHHHHHHHHHHHHHhc
Confidence 12233333322111 1246777 99999999999999999887654
No 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.94 E-value=2.1e-26 Score=197.94 Aligned_cols=165 Identities=18% Similarity=0.302 Sum_probs=127.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+.. +.+|++.. ...+.++ .+.+.+|||+|++++..
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~---------------~~~~~~~Dt~G~~~~~~ 81 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYK---------------NISFEVWDLGGQTGVRP 81 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEET---------------TEEEEEEEECCSSSSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEEC---------------CEEEEEEECCCCHhHHH
Confidence 356899999999999999999999887753 55676643 3444442 47899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.....
T Consensus 82 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~nK~Dl~~~~~---------- 140 (189)
T 2x77_A 82 YWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDE-----------LRKSLLLIFANKQDLPDAAS---------- 140 (189)
T ss_dssp CCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCST-----------TTTCEEEEEEECTTSTTCCC----------
T ss_pred HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhh-----------cCCCeEEEEEECCCCcCCCC----------
Confidence 988899999999999999999999999999988876532 13789999999999976421
Q ss_pred HHHHHHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 179 ~~~~~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.+++.+..+.... ...++++| |||++|.|++++++.+.+.+.++
T Consensus 141 -~~~~~~~~~~~~~~~~~~~~~~---------~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 141 -EAEIAEQLGVSSIMNRTWTIVK---------SSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp -HHHHHHHTTGGGCCSSCEEEEE---------CCTTTCTTHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHhChhhccCCceEEEE---------ccCCCccCHHHHHHHHHHHHHhc
Confidence 1223333332110 01246777 99999999999999998887654
No 98
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.93 E-value=9.7e-26 Score=210.31 Aligned_cols=167 Identities=20% Similarity=0.279 Sum_probs=140.7
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.+|++..+ ...+.++ +..+.+.||||+|++++..
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~l~Dt~G~~~~~~ 218 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD-------------GKPVNLGLWDTAGLEDYDR 218 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEET-------------TEEEEEEEEEECCCGGGTT
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEEC-------------CEEEEEEEEeCCCchhhhH
Confidence 3458999999999999999999999999888888877655 4455554 5778899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc----------
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE---------- 167 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~---------- 167 (333)
+...+++.+|++|+|||++++.+|+.+. .|+..+..... ++|+++|+||+|+....
T Consensus 219 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------------~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 285 (332)
T 2wkq_A 219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-------------NTPIILVGTKLDLRDDKDTIEKLKEKK 285 (332)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-------------TSCEEEEEECHHHHTCHHHHHHHHHTT
T ss_pred HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC-------------CCcEEEEEEchhcccccchhhhccccc
Confidence 9999999999999999999999999986 79999887742 78999999999997531
Q ss_pred CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 168 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.+.+. .+++.++++..++ .+|+| |||++|.|++++|+.+.+.+++
T Consensus 286 ~~~v~----~~~~~~~~~~~~~------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 286 LTPIT----YPQGLAMAKEIGA------VKYLE---------CSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp CCCCC----HHHHHHHHHHTTC------SEEEE---------CCTTTCTTHHHHHHHHHHHHHC
T ss_pred ccccc----HHHHHHHHHHcCC------cEEEE---------ecCCCCcCHHHHHHHHHHHHhc
Confidence 13455 3788999998874 26777 9999999999999999887653
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.89 E-value=3.7e-28 Score=211.80 Aligned_cols=166 Identities=20% Similarity=0.293 Sum_probs=133.4
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.+|++..+ ...+.++ +..+.+.||||+|++++.
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~~~~~ 92 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD-------------GKPVNLGLWDTAGQEDYD 92 (204)
Confidence 35668999999999999999999999888777777776544 3333333 567789999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC--------
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG-------- 168 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~-------- 168 (333)
.++..+++.+|++|+|||++++.+|+.+. .|+..+.... .++|++||+||+|+.....
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~-------------~~~piilv~NK~Dl~~~~~~~~~~~~~ 159 (204)
T 3th5_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-------------PNTPIILVGTKLDLRDDKDTIEKLKEK 159 (204)
Confidence 99999999999999999999999999986 8988887653 2689999999999975421
Q ss_pred --CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 169 --TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 169 --r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+.+. .+++.++++.+++ .+|+| |||++|.|++++++.+.+.+
T Consensus 160 ~~~~v~----~~~~~~~~~~~~~------~~~~~---------vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 160 KLTPIT----YPQGLAMAKEIGA------VKYLE---------CSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 1233 2566777777663 26777 99999999999988887654
No 100
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.93 E-value=7.9e-26 Score=190.76 Aligned_cols=153 Identities=11% Similarity=0.064 Sum_probs=115.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh---
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK--- 97 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~--- 97 (333)
.++|+|+|++|||||||+++|++..+...+.++.+.+.....+.++ ...+.+|||+|++++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~~~ 67 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN---------------GEKFKVVDLPGVYSLTANS 67 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET---------------TEEEEEEECCCCSCSSSSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC---------------CcEEEEEECCCcccCCCcc
Confidence 5799999999999999999999887655555665666656666553 3579999999988774
Q ss_pred ---hhHHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 98 ---DCRSILYS--QINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 98 ---~~~~~~~~--~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
.+...+++ ++|++++|+|+++. +.+..|+.++.+. ++|+++|+||+|+... +.+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~v~D~~~~---~~~~~~~~~~~~~---------------~~p~ilv~nK~Dl~~~--~~~~ 127 (165)
T 2wji_A 68 IDEIIARDYIINEKPDLVVNIVDATAL---ERNLYLTLQLMEM---------------GANLLLALNKMDLAKS--LGIE 127 (165)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEETTCH---HHHHHHHHHHHHT---------------TCCEEEEEECHHHHHH--TTCC
T ss_pred hhHHHHHHHHhcCCCCEEEEEecCCch---hHhHHHHHHHHhc---------------CCCEEEEEEchHhccc--cChh
Confidence 44455665 89999999999875 4455688877664 5899999999999754 3333
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+++++++.++ ++|+| |||++|.|++++|+.+.+.+
T Consensus 128 -----~~~~~~~~~~~-------~~~~~---------~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 128 -----IDVDKLEKILG-------VKVVP---------LSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp -----CCHHHHHHHHT-------SCEEE---------CBGGGTBSHHHHHHHHHHHT
T ss_pred -----hHHHHHHHHhC-------CCEEE---------EEcCCCCCHHHHHHHHHHHh
Confidence 23677888877 46788 99999999999999887653
No 101
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.93 E-value=3.6e-25 Score=191.53 Aligned_cols=164 Identities=25% Similarity=0.459 Sum_probs=141.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|++..+...+.+|++.++....+.++ +..+.+.+||++|++++..
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~-------------g~~~~~~i~Dt~g~~~~~~ 93 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-------------GKTIKAQIWDTAGLERYRA 93 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEET-------------TEEEEEEEEEECSCCSSSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEEC-------------CEEEEEEEEECCCCcchhh
Confidence 456899999999999999999999999888889999999988888876 6778899999999999988
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
+...+++.++++++|||+++..+|+++..|+..+..... .+.|+++|+||+|+.+. +.+. .+
T Consensus 94 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~i~~v~nK~Dl~~~--~~~~----~~ 155 (191)
T 1oix_A 94 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD------------SNIVIMLVGNKSDLRHL--RAVP----TD 155 (191)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECGGGGGG--CCSC----HH
T ss_pred hhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC------------CCCcEEEEEECcccccc--cccC----HH
Confidence 888889999999999999999999999999988766432 36899999999999764 3344 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.++.++...+ +++++ +||+++.|++++++.+.+.+
T Consensus 156 ~a~~l~~~~~-------~~~ld---------~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 156 EARAFAEKNG-------LSFIE---------TSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHTT-------CEEEE---------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHh
Confidence 7889998877 45777 99999999999998887754
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.93 E-value=2.1e-26 Score=208.80 Aligned_cols=180 Identities=16% Similarity=0.205 Sum_probs=126.2
Q ss_pred CCCCCcceEEEEECCC---------CCCHHHHHHHHHc---CCCCCCCCccc-ceeEEEEEEEeCCCC--CCCCccCCCC
Q 019959 15 GGPPTGQVRVLVVGDS---------GVGKTSLVNLIVK---GSSFSRPSQTI-GCTVGVKHITYGSSG--SSSNSIKGDS 79 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~---------~vGKSSLl~~l~~---~~~~~~~~~t~-~~~~~~~~~~~~~~~--~~~~~i~~~~ 79 (333)
.......+||+|||++ |||||||+++|++ +.+...+.+|+ +.++..+.+.++... .+. .....+
T Consensus 13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~-~~~~~~ 91 (255)
T 3c5h_A 13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEV-SRSLED 91 (255)
T ss_dssp TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEE-C-----
T ss_pred CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccc-cccccC
Confidence 3345677999999999 9999999999998 66766676665 566544333210000 000 000023
Q ss_pred CceEEEEEEe-----------------------CCCchhhhhhHHhhcc---------------------CCcEEEEEEE
Q 019959 80 ERDFFVELWD-----------------------ISGHERYKDCRSILYS---------------------QINGVIFVHD 115 (333)
Q Consensus 80 ~~~~~l~i~D-----------------------t~G~e~~~~~~~~~~~---------------------~ad~vIlV~D 115 (333)
+..+.+.||| ++|+++|..++..++. ++|++|+|||
T Consensus 92 ~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D 171 (255)
T 3c5h_A 92 CVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGID 171 (255)
T ss_dssp ----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEE
T ss_pred CcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEE
Confidence 5678899999 7777778777777777 7999999999
Q ss_pred CCCc--ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCC
Q 019959 116 LSQR--RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSS 193 (333)
Q Consensus 116 ~s~~--~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~ 193 (333)
++++ .+|+.+..|+.++..... ..++|++|||||+|+... +. .++++++++...
T Consensus 172 ~t~~~~~s~~~~~~~l~~i~~~~~-----------~~~~piilV~NK~Dl~~~--~~------v~~~~~~~~~~~----- 227 (255)
T 3c5h_A 172 VSRGMNRNFDDQLKFVSNLYNQLA-----------KTKKPIVVVLTKCDEGVE--RY------IRDAHTFALSKK----- 227 (255)
T ss_dssp CBC----CHHHHHHHHHHHHHHHH-----------HTTCCEEEEEECGGGBCH--HH------HHHHHHHHHTSS-----
T ss_pred CCCCchhhHHHHHHHHHHHHHHhc-----------cCCCCEEEEEEccccccc--HH------HHHHHHHHHhcC-----
Confidence 9998 999999999999876510 136899999999999754 22 255677776532
Q ss_pred cCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 194 EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 194 ~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.++|+| |||++|.|++++|+.+++.+
T Consensus 228 -~~~~~e---------~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 228 -NLQVVE---------TSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp -SCCEEE---------CBTTTTBSHHHHHHHHHHHH
T ss_pred -CCeEEE---------EECCCCCCHHHHHHHHHHHh
Confidence 256888 99999999999999998765
No 103
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.93 E-value=5.8e-25 Score=186.36 Aligned_cols=167 Identities=19% Similarity=0.177 Sum_probs=122.0
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....++|+|+|++|||||||+++|++..+...+.++++.++....+.++ ...+.||||+|++++.
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~ 69 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVN---------------DKKITFLDTPGHEAFT 69 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEET---------------TEEEEESCCCSSSSSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeC---------------CceEEEEECCCCHHHH
Confidence 3456799999999999999999999998887777777777776667664 2468899999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..++..+|++|+|||+++......+. ++..+.. .++|+++|+||+|+.... .
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~l~~~~~---------------~~~p~ilv~nK~Dl~~~~---------~ 124 (178)
T 2lkc_A 70 TMRARGAQVTDIVILVVAADDGVMPQTVE-AINHAKA---------------ANVPIIVAINKMDKPEAN---------P 124 (178)
T ss_dssp CSCCSSCCCCCEEEEEEETTCCCCHHHHH-HHHHHGG---------------GSCCEEEEEETTTSSCSC---------H
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHHh---------------CCCCEEEEEECccCCcCC---------H
Confidence 98888899999999999999864433322 2222322 268999999999997642 1
Q ss_pred HHHHHHHHHcCCCCCC--cCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSS--EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~--~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++........+..... ..+++++ |||++|.|++++++.+.+.+....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~Sa~~~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 125 DRVMQELMEYNLVPEEWGGDTIFCK---------LSAKTKEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp HHHHHHHTTTTCCBTTTTSSEEEEE---------CCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCcChhHcCCcccEEE---------EecCCCCCHHHHHHHHHHhhhhhc
Confidence 2333333333321100 1146777 999999999999988888765543
No 104
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.92 E-value=2.4e-25 Score=207.31 Aligned_cols=167 Identities=16% Similarity=0.208 Sum_probs=127.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCC--CC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGS--SF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~--~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
..+||+|+|++|||||||+++|+++. +. ..+.+|++.++.. +.+. ..+.+.||||+|++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~--------------~~~~l~i~Dt~G~~~~ 65 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFL--------------GNMTLNLWDCGGQDVF 65 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEET--------------TTEEEEEEEECCSHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeC--------------CceEEEEEECCCcHHH
Confidence 45899999999999999999999773 22 2466677766653 3332 2578999999999998
Q ss_pred -----hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHH---HhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC
Q 019959 97 -----KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI---ATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 168 (333)
Q Consensus 97 -----~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i---~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~ 168 (333)
..++..+++++|++|+|||++++.+|+++..|...+ .... +++|++|||||+|+...+.
T Consensus 66 ~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~-------------~~~piilv~NK~Dl~~~~~ 132 (307)
T 3r7w_A 66 MENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYS-------------PDAKIFVLLHKMDLVQLDK 132 (307)
T ss_dssp HHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHC-------------TTCEEEEEEECGGGSCHHH
T ss_pred hhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhC-------------CCCeEEEEEecccccchhh
Confidence 677888899999999999999999999997775544 4432 3799999999999987332
Q ss_pred CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 169 TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 169 r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+........++++++++.+|+. .++|+| |||++ .++.++|..+++.+
T Consensus 133 r~~~~~v~~~~~~~~~~~~g~~----~~~~~~---------tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 133 REELFQIMMKNLSETSSEFGFP----NLIGFP---------TSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCC----SCEEEE---------CCTTS-SHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHcCCC----CeEEEE---------eeecC-ChHHHHHHHHHHHH
Confidence 4311111137788999988852 257888 99999 78888888777543
No 105
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.92 E-value=3.4e-25 Score=208.25 Aligned_cols=163 Identities=20% Similarity=0.315 Sum_probs=122.7
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+... .+|++..+. .+.. ..+.+.||||+|+++|..
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~~---------------~~~~l~i~Dt~G~~~~~~ 224 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEY---------------KNISFTVWDVGGQDKIRP 224 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEEE---------------TTEEEEEEECC-----CC
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEec---------------CcEEEEEEECCCCHhHHH
Confidence 3567999999999999999999998887543 356665543 3333 357899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|+.+..|+..+..... ..++|+|||+||+|+....
T Consensus 225 ~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilV~NK~Dl~~~~----------- 282 (329)
T 3o47_A 225 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE-----------LRDAVLLVFANKQDLPNAM----------- 282 (329)
T ss_dssp SHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGG-----------GTTCEEEEEEECTTSTTCC-----------
T ss_pred HHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhc-----------cCCCeEEEEEECccCCccc-----------
Confidence 999999999999999999999999999888888765531 1378999999999998652
Q ss_pred HHHHHHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 179 ~~~~~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
...++...++.... ...++|++ |||++|.|++++|+.|++.+.
T Consensus 283 ~~~~i~~~~~~~~~~~~~~~~~~---------vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 283 NAAEITDKLGLHSLRHRNWYIQA---------TCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp CHHHHHHHHTCTTCCSSCEEEEE---------CBTTTTBTHHHHHHHHHHHHT
T ss_pred CHHHHHHHhchhhhhcCCCEEEE---------EECCCCcCHHHHHHHHHHHHH
Confidence 13344555554221 12356777 999999999999999988764
No 106
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.92 E-value=6.4e-25 Score=188.11 Aligned_cols=159 Identities=11% Similarity=0.067 Sum_probs=124.0
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
+++...+||+|+|++|||||||+++|++..+.....++++.+.....+.++ .+.+.+|||+|+++
T Consensus 2 ~~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~~~l~Dt~G~~~ 66 (188)
T 2wjg_A 2 GSHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN---------------GEKFKVVDLPGVYS 66 (188)
T ss_dssp CCCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET---------------TEEEEEEECCCCSC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC---------------CcEEEEEECCCcCc
Confidence 455678999999999999999999999876655555666666666666653 36799999999887
Q ss_pred hh------hhHHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc
Q 019959 96 YK------DCRSILYS--QINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE 167 (333)
Q Consensus 96 ~~------~~~~~~~~--~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~ 167 (333)
+. .+...++. .+|++++|+|+++ ++.+..|+.++... ++|+++|+||+|+...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~---------------~~piilv~nK~Dl~~~- 127 (188)
T 2wjg_A 67 LTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLMEM---------------GANLLLALNKMDLAKS- 127 (188)
T ss_dssp CSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHTT---------------TCCEEEEEECHHHHHH-
T ss_pred cccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHhc---------------CCCEEEEEEhhhcccc-
Confidence 74 44555664 5999999999975 66777888888664 5899999999999754
Q ss_pred CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 168 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+.+. +.++++++.++ +++++ |||++|.|++++++.+.+.+.
T Consensus 128 -~~~~-----~~~~~~~~~~~-------~~~~~---------~Sa~~~~~v~~l~~~i~~~~~ 168 (188)
T 2wjg_A 128 -LGIE-----IDVDKLEKILG-------VKVVP---------LSAAKKMGIEELKKAISIAVK 168 (188)
T ss_dssp -TTCC-----CCHHHHHHHHT-------SCEEE---------CBGGGTBSHHHHHHHHHHHHT
T ss_pred -ccch-----HHHHHHHHHhC-------CCeEE---------EEecCCCCHHHHHHHHHHHHH
Confidence 2333 34677888877 46778 999999999999988877653
No 107
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.92 E-value=1.7e-24 Score=189.70 Aligned_cols=123 Identities=21% Similarity=0.208 Sum_probs=91.4
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.++ +.++.. +.+++ ...+.+.||||+|++++..
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~------------~~~~~~~i~Dt~G~~~~~~ 69 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNN------------NRGNSLTLIDLPGHESLRF 69 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSS------------TTCCEEEEEECCCCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecC------------CCccEEEEEECCCChhHHH
Confidence 34679999999999999999999999887766544 444443 44431 2368899999999999998
Q ss_pred -hHHhhccCCcEEEEEEECCCcc-cHHHHHH-HHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 99 -CRSILYSQINGVIFVHDLSQRR-TKTSLQK-WAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 99 -~~~~~~~~ad~vIlV~D~s~~~-S~~~l~~-~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
++..+++.+|++|+|||+++.. ++..+.. |...+..... ...++|++||+||+|+...
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 70 QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMA----------LKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp HHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHT----------STTCCEEEEEEECTTSTTC
T ss_pred HHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhh----------cccCCCEEEEEECCCCCCc
Confidence 7888999999999999999854 4555544 4444433110 0136899999999999865
No 108
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.91 E-value=5.3e-26 Score=211.79 Aligned_cols=161 Identities=14% Similarity=0.136 Sum_probs=115.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh-
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFS---RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD- 98 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~- 98 (333)
||+++|+.|||||||++++.++.+.. ...+|+|.++.. + + ..++++||||+||++|..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~--------------~~v~LqIWDTAGQErf~~~ 62 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S--------------TLIDLAVMELPGQLNYFEP 62 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C--------------SSSCEEEEECCSCSSSCCC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c--------------cEEEEEEEECCCchhccch
Confidence 79999999999999999988664432 356778877642 2 2 236799999999999974
Q ss_pred --hHHhhccCCcEEEEEEECCCc--ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC-----C
Q 019959 99 --CRSILYSQINGVIFVHDLSQR--RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG-----T 169 (333)
Q Consensus 99 --~~~~~~~~ad~vIlV~D~s~~--~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~-----r 169 (333)
.+..||++++++|+|||++++ +++..+..|+.++.... +++|++|||||+||..++. |
T Consensus 63 ~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-------------~~ipillvgNK~DL~~~~~R~~~~R 129 (331)
T 3r7w_B 63 SYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN-------------PSINIEVLIHKVDGLSEDFKVDAQR 129 (331)
T ss_dssp SHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHC-------------TTCEEEEECCCCCSSCSHHHHHHHH
T ss_pred hhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcC-------------CCCcEEEEEECcccCchhhhhhHHH
Confidence 468899999999999999998 22333344455555443 3799999999999986532 2
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.|.. ++++++++.. +. ..+++|+| |||++ .||.++|..+++.++.
T Consensus 130 ~V~~----~~~~~la~~~-~~--~~~i~f~e---------TSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 130 DIMQ----RTGEELLELG-LD--GVQVSFYL---------TSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp HHHH----HHHHTTSSSS-CS--CCCEEEEC---------CCSSS-SHHHHHHHHHHTTSST
T ss_pred HhhH----HHHHHHHhhc-cc--ccCceEEE---------eccCC-CcHHHHHHHHHHHHHh
Confidence 3332 4555665531 00 01367888 99998 5888888888876543
No 109
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.91 E-value=1.7e-23 Score=185.92 Aligned_cols=169 Identities=15% Similarity=0.102 Sum_probs=118.6
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc-----
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH----- 93 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~----- 93 (333)
...+||+|+|++|||||||+++|++..+.....+....++....+.+ ..+.+.||||+|+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~---------------~~~~~~l~DtpG~~~~~~ 91 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH---------------KLNKYQIIDTPGLLDRAF 91 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE---------------TTEEEEEEECTTTTTSCG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec---------------CCCeEEEEECCCCcCccc
Confidence 56799999999999999999999988764332222233333333333 2467999999998
Q ss_pred -hh----hhhhHHhhccCCcEEEEEEECCCcccHH--HHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 94 -ER----YKDCRSILYSQINGVIFVHDLSQRRTKT--SLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 94 -e~----~~~~~~~~~~~ad~vIlV~D~s~~~S~~--~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
++ +..+ ..++..+|++|+|||++++.+|. ....|+..+.... .++|+++|+||+|+...
T Consensus 92 ~~~~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-------------~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 92 ENRNTIEMTTI-TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-------------SNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp GGCCHHHHHHH-HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--------------CCCEEEEEECGGGCC-
T ss_pred chhhhHHHHHH-HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-------------cCCcEEEEEeCcccCCc
Confidence 44 3333 33577899999999999998875 2346777776542 26899999999999865
Q ss_pred cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
+.+.. +..+.+.+++...+. .++|++ |||++|.|++++++.+.+.+.+..
T Consensus 158 --~~~~~-~~~~~~~~~~~~~~~-----~~~~~~---------~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 158 --DSLSI-DNKLLIKQILDNVKN-----PIKFSS---------FSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp ---CCCH-HHHHHHHHHHHHCCS-----CEEEEE---------CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred --hhhHH-HHHHHHHHHHHhcCC-----CceEEE---------EecccCCCHHHHHHHHHHHHHHHH
Confidence 34432 112356667766651 146777 999999999999999999887654
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.91 E-value=7e-24 Score=209.63 Aligned_cols=163 Identities=20% Similarity=0.309 Sum_probs=127.6
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|||++|||||||+++|++..+. .+.+|++.++. .+.+ ..+.+.||||+|+++|..
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~--~~~~---------------~~~~~~l~Dt~G~~~~~~ 381 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY---------------KNVKFNVWDVGGQDKIRP 381 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEE--EEES---------------SSCEEEEEEECCCGGGSG
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEE--EEEe---------------CCEEEEEEECCCcHHHHH
Confidence 45799999999999999999999988864 45567775543 3433 346899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|+.+..|+.++..... ..++|+|||+||+|+.... .
T Consensus 382 ~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~ilv~NK~Dl~~~~----~------ 440 (497)
T 3lvq_E 382 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE-----------MRDAIILIFANKQDLPDAM----K------ 440 (497)
T ss_dssp GGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGG-----------GTTCEEEEEEECCSSSSCC----C------
T ss_pred HHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhh-----------cCCCcEEEEEECCCCCcCC----C------
Confidence 999999999999999999999999999999998866421 1378999999999997541 1
Q ss_pred HHHHHHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 179 ~~~~~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
..++.+.++.... ...+++++ |||++|.|++++|+.|.+.+.
T Consensus 441 -~~~~~~~~~~~~~~~~~~~~~~---------~SA~~g~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 441 -PHEIQEKLGLTRIRDRNWYVQP---------SCATSGDGLYEGLTWLTSNYK 483 (497)
T ss_dssp -HHHHHHHTTCTTCCSSCEEEEE---------CBTTTTBTHHHHHHHHHHHCC
T ss_pred -HHHHHHHhchhhhhcCCeEEEE---------EECCCCCCHHHHHHHHHHHHH
Confidence 2334445543211 11245677 999999999999999887653
No 111
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.91 E-value=2.3e-23 Score=179.39 Aligned_cols=163 Identities=21% Similarity=0.269 Sum_probs=111.9
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC---
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG--- 92 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G--- 92 (333)
.+....++|+|+|++|||||||+++|++..+.....++.+.+.......++ + .+.||||+|
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-------------~---~~~l~Dt~G~~~ 81 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-------------D---ELHFVDVPGYGF 81 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-------------T---TEEEEECCCBCC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-------------C---cEEEEECCCCCc
Confidence 345567899999999999999999999988766666666666655555443 1 389999999
Q ss_pred -------chhhhhhHHhhccCC---cEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 93 -------HERYKDCRSILYSQI---NGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 93 -------~e~~~~~~~~~~~~a---d~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
++.+..+...++..+ |++|+|+|+++..++.... ++..+... ++|+++|+||+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~---------------~~p~i~v~nK~D 145 (195)
T 1svi_A 82 AKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKYY---------------GIPVIVIATKAD 145 (195)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHHT---------------TCCEEEEEECGG
T ss_pred cccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHHc---------------CCCEEEEEECcc
Confidence 788888888888777 9999999999998887753 22223222 689999999999
Q ss_pred CCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 163 VAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 163 l~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+.... .+. ....++.+.++... .+++++ +||++|.|++++++.+.+.+
T Consensus 146 l~~~~--~~~-----~~~~~~~~~~~~~~---~~~~~~---------~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 146 KIPKG--KWD-----KHAKVVRQTLNIDP---EDELIL---------FSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp GSCGG--GHH-----HHHHHHHHHHTCCT---TSEEEE---------CCTTTCTTHHHHHHHHHHHH
T ss_pred cCChH--HHH-----HHHHHHHHHHcccC---CCceEE---------EEccCCCCHHHHHHHHHHHh
Confidence 98652 221 22334444344211 256777 99999999999999887754
No 112
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.90 E-value=3e-23 Score=178.11 Aligned_cols=163 Identities=18% Similarity=0.207 Sum_probs=118.2
Q ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC-
Q 019959 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG- 92 (333)
Q Consensus 14 ~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G- 92 (333)
...+....+||+|+|++|||||||+++|++..+ ....++.+.+........+ ..+.+|||+|
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~----------------~~~~i~Dt~G~ 78 (195)
T 3pqc_A 16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVN----------------SKYYFVDLPGY 78 (195)
T ss_dssp TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEET----------------TTEEEEECCCB
T ss_pred hhCCCCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEEC----------------CcEEEEECCCC
Confidence 445567788999999999999999999998873 3444455554444443332 1378999999
Q ss_pred ---------chhhhhhHHhhccCC---cEEEEEEECCCcccHHH--HHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEe
Q 019959 93 ---------HERYKDCRSILYSQI---NGVIFVHDLSQRRTKTS--LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 158 (333)
Q Consensus 93 ---------~e~~~~~~~~~~~~a---d~vIlV~D~s~~~S~~~--l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVg 158 (333)
++.+..+...+++.+ |++++|+|+++..+... +..|+.. . ++|+++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~---~---------------~~p~i~v~ 140 (195)
T 3pqc_A 79 GYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS---L---------------NIPFTIVL 140 (195)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH---T---------------TCCEEEEE
T ss_pred ccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH---c---------------CCCEEEEE
Confidence 777888888877766 99999999988755443 3344443 2 58999999
Q ss_pred eCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 159 NKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 159 NK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
||+|+.....+.+. .+++++++...+. +++++ |||++|.|++++++.+.+.+.
T Consensus 141 nK~Dl~~~~~~~~~----~~~~~~~~~~~~~------~~~~~---------~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 141 TKMDKVKMSERAKK----LEEHRKVFSKYGE------YTIIP---------TSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp ECGGGSCGGGHHHH----HHHHHHHHHSSCC------SCEEE---------CCTTTCTTHHHHHHHHHHHHC
T ss_pred EChhcCChHHHHHH----HHHHHHHHhhcCC------CceEE---------EecCCCCCHHHHHHHHHHHhh
Confidence 99999865323222 3556666655442 56777 999999999999999887653
No 113
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.90 E-value=2.9e-24 Score=214.38 Aligned_cols=171 Identities=17% Similarity=0.245 Sum_probs=121.5
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCC-CCCceEEEEEEeCCCchh
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKG-DSERDFFVELWDISGHER 95 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~l~i~Dt~G~e~ 95 (333)
.+...+||+|||++|||||||+++|++..+...+.+|+|.++..+..... ..+.. .++..+.+.||||+|++.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~------~~v~~~~~~~~~~~~i~Dt~G~e~ 110 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNI------KGLENDDELKECLFHFWDFGGQEI 110 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGS------GGGTTCSTTTTCEEEEECCCSCCT
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccc------cceeecCCCceEEEEEEECCcHHH
Confidence 46778999999999999999999999999988888999988765532100 00000 224578899999999999
Q ss_pred hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
+..+...+++++|++|+|||+++. +.+..|+.++.... .++|+||||||+|+... +.+..
T Consensus 111 ~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-------------~~~pvilV~NK~Dl~~~--~~v~~-- 170 (535)
T 3dpu_A 111 MHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-------------GKSPVIVVMNKIDENPS--YNIEQ-- 170 (535)
T ss_dssp TTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-------------SSCCEEEEECCTTTCTT--CCCCH--
T ss_pred HHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-------------CCCCEEEEEECCCcccc--cccCH--
Confidence 999999999999999999999865 55678999998874 26899999999999865 44542
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+.+++++...+ +++++ |||++|.|++++++.+.+.+..
T Consensus 171 --~~~~~~~~~~~-------~~~~~---------vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 171 --KKINERFPAIE-------NRFHR---------ISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp --HHHHHHCGGGT-------TCEEE---------CCC-----CTTHHHHHHHHHTC
T ss_pred --HHHHHHHHhcC-------CceEE---------EecCcccCHHHHHHHHHHHHhc
Confidence 66666666665 46888 9999999999999888876644
No 114
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.90 E-value=2.1e-23 Score=173.58 Aligned_cols=150 Identities=18% Similarity=0.123 Sum_probs=104.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh-----
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER----- 95 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~----- 95 (333)
.||+|+|++|||||||+++|++..+. ....++.+.+.....+.++ ...+.||||+|++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~~~~ 66 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETD---------------RGRFLLVDTGGLWSGDKWE 66 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEET---------------TEEEEEEECGGGCSSSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeC---------------CceEEEEECCCCCCccchH
Confidence 58999999999999999999988643 2333333445555555553 24689999999876
Q ss_pred --hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 96 --YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 96 --~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
+......++..+|++|+|||+++..+... .|+..+... .++|+++|+||+|+....
T Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~--------------~~~p~ilv~nK~Dl~~~~------ 124 (161)
T 2dyk_A 67 KKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR--------------KGKPVILVATKVDDPKHE------ 124 (161)
T ss_dssp HHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH--------------HTCCEEEEEECCCSGGGG------
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh--------------cCCCEEEEEECcccccch------
Confidence 45556677899999999999999765433 222222222 168999999999997641
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+++.+++ ++++ .+|+| |||++|.|++++++.+++.
T Consensus 125 ----~~~~~~~-~~~~------~~~~~---------~Sa~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 125 ----LYLGPLY-GLGF------GDPIP---------TSSEHARGLEELLEAIWER 159 (161)
T ss_dssp ----GGCGGGG-GGSS------CSCEE---------CBTTTTBSHHHHHHHHHHH
T ss_pred ----HhHHHHH-hCCC------CCeEE---------EecccCCChHHHHHHHHHh
Confidence 2233444 4453 25777 9999999999999988765
No 115
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.90 E-value=9.3e-24 Score=180.78 Aligned_cols=163 Identities=17% Similarity=0.199 Sum_probs=122.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC---------
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG--------- 92 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G--------- 92 (333)
+||+|+|++|||||||+++|++..+...+.++++.+ ...+.+. .+.+|||+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~--~~~~~~~-----------------~~~l~Dt~G~~~~~~~~~ 62 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK-----------------NHKIIDMPGFGFMMGLPK 62 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET-----------------TEEEEECCCBSCCTTSCH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce--eEEEecC-----------------CEEEEECCCccccccCCH
Confidence 699999999999999999999998877666655433 3333332 389999999
Q ss_pred --chhhhhhHHhhccC-CcEEEEEEECCCcccHHHH-HHHHHH--------HHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 93 --HERYKDCRSILYSQ-INGVIFVHDLSQRRTKTSL-QKWAVE--------IATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 93 --~e~~~~~~~~~~~~-ad~vIlV~D~s~~~S~~~l-~~~~~~--------i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
++.+..+...+++. ++++++||++.+..++.++ ..|... +..... ..++|+++|+||
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~piilv~nK 131 (190)
T 2cxx_A 63 EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR-----------ELDIPTIVAVNK 131 (190)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH-----------HTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHH-----------hcCCceEEEeeh
Confidence 78888888888887 8988888998888899887 667652 211110 126899999999
Q ss_pred cCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 161 ADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 161 ~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+|+.... .+.++++++.+++.......+++| |||++|.|++++++.+.+.+.+.
T Consensus 132 ~Dl~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~---------~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 132 LDKIKNV---------QEVINFLAEKFEVPLSEIDKVFIP---------ISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp GGGCSCH---------HHHHHHHHHHHTCCGGGHHHHEEE---------CCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HhccCcH---------HHHHHHHHHHhhhhhhccCCcEEE---------EecCCCCCHHHHHHHHHHhcchh
Confidence 9998652 267888999988621000124577 99999999999999999887653
No 116
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.90 E-value=2.8e-24 Score=182.85 Aligned_cols=152 Identities=18% Similarity=0.174 Sum_probs=110.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh-
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD- 98 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~- 98 (333)
.+||+|+|++|||||||+++|++..+. ....++.+.++....+.++ + ..+.+|||+|++++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~-------------~--~~~~l~Dt~G~~~~~~~ 68 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHID-------------G--MPLHIIDTAGLREASDE 68 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEET-------------T--EEEEEEECCCCSCCSSH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEEC-------------C--eEEEEEECCCcccchhH
Confidence 479999999999999999999987642 2333444556666777664 2 4589999999865321
Q ss_pred -----h--HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCcc
Q 019959 99 -----C--RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRG 171 (333)
Q Consensus 99 -----~--~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v 171 (333)
+ ...+++.+|++|+|||+++..+++. ..|+..+..... .++|+++|+||+|+.... ..
T Consensus 69 ~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~------------~~~p~ilv~NK~Dl~~~~-~~- 133 (172)
T 2gj8_A 69 VERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLP------------AKLPITVVRNKADITGET-LG- 133 (172)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSC------------TTCCEEEEEECHHHHCCC-CE-
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcc------------cCCCEEEEEECccCCcch-hh-
Confidence 1 1235789999999999999998874 478877776532 368999999999996431 10
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+++.. .++|+| |||++|.|++++++.+.+.+
T Consensus 134 -----------~~~~~-------~~~~~~---------~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 134 -----------MSEVN-------GHALIR---------LSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp -----------EEEET-------TEEEEE---------CCTTTCTTHHHHHHHHHHHC
T ss_pred -----------hhhcc-------CCceEE---------EeCCCCCCHHHHHHHHHHHh
Confidence 01111 246777 99999999999998887654
No 117
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.89 E-value=2.2e-23 Score=189.42 Aligned_cols=155 Identities=19% Similarity=0.161 Sum_probs=116.8
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+|+|++..+.....++++.+.....+.. ..+.+.||||||+..+..
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~---------------~~~~~~l~DtpG~~~~~~ 67 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY---------------KGYTINLIDLPGTYSLGY 67 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE---------------TTEEEEEEECCCCSSCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE---------------CCeEEEEEECCCcCccCC
Confidence 45689999999999999999999987765444444444444444443 247899999999877653
Q ss_pred ------hHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 99 ------CRSILY--SQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 99 ------~~~~~~--~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
+...++ ..+|++|+|+|+++.++.. .|..++.+. ++|+++|+||+|+... +.
T Consensus 68 ~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~---------------~~pvilv~NK~Dl~~~--~~ 127 (258)
T 3a1s_A 68 SSIDEKIARDYLLKGDADLVILVADSVNPEQSL---YLLLEILEM---------------EKKVILAMTAIDEAKK--TG 127 (258)
T ss_dssp SSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHH---HHHHHHHTT---------------TCCEEEEEECHHHHHH--TT
T ss_pred CCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHH---HHHHHHHhc---------------CCCEEEEEECcCCCCc--cc
Confidence 334455 5899999999999876543 466666654 5899999999999765 23
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+. .++..+++.+| +|+++ +||++|.|++++++.+.+.+
T Consensus 128 i~-----~~~~~l~~~lg-------~~vi~---------~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 128 MK-----IDRYELQKHLG-------IPVVF---------TSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp CC-----BCHHHHHHHHC-------SCEEE---------CCTTTCTTHHHHHHHHHHHH
T ss_pred hH-----HHHHHHHHHcC-------CCEEE---------EEeeCCcCHHHHHHHHHHHh
Confidence 33 23677888888 57888 99999999999999887754
No 118
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.89 E-value=5.9e-23 Score=187.95 Aligned_cols=151 Identities=18% Similarity=0.169 Sum_probs=112.8
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh---
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK--- 97 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~--- 97 (333)
.+||+|+|++|||||||+|+|++..+.....+ |.++..+...+. . .+.+.||||||++.+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~-------------~-~~~l~l~DtpG~~~~~~~~ 66 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVK-------------K-NKDLEIQDLPGIYSMSPYS 66 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECT-------------T-CTTEEEEECCCCSCSSCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEe-------------c-CCeEEEEECCCcCccCCCC
Confidence 57999999999999999999998764444444 333434444443 2 3459999999988775
Q ss_pred ---hhHHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 98 ---DCRSILYS--QINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 98 ---~~~~~~~~--~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
.+...++. .+|++|+|||+++.+++ ..|..++.+. ++|+++|+||+|+... +.+.
T Consensus 67 ~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~~---------------~~p~ilv~NK~Dl~~~--~~~~ 126 (272)
T 3b1v_A 67 PEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIET---------------GIPVTIALNMIDVLDG--QGKK 126 (272)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHHT---------------CSCEEEEEECHHHHHH--TTCC
T ss_pred hHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHhc---------------CCCEEEEEEChhhCCc--CCcH
Confidence 45556665 69999999999986543 4566666654 6899999999999754 2222
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
..+..+++.+| +|+++ |||++|.|++++++.+.+.
T Consensus 127 -----~~~~~l~~~lg-------~~vi~---------~SA~~g~gi~el~~~i~~~ 161 (272)
T 3b1v_A 127 -----INVDKLSYHLG-------VPVVA---------TSALKQTGVDQVVKKAAHT 161 (272)
T ss_dssp -----CCHHHHHHHHT-------SCEEE---------CBTTTTBSHHHHHHHHHHS
T ss_pred -----HHHHHHHHHcC-------CCEEE---------EEccCCCCHHHHHHHHHHH
Confidence 23677888887 57888 9999999999998888653
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.88 E-value=5.4e-23 Score=186.62 Aligned_cols=150 Identities=16% Similarity=0.154 Sum_probs=115.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh----
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD---- 98 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~---- 98 (333)
+|+|+|++|||||||+|+|++..+.....++++.+.....+.++ ...+.||||||+..+..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~---------------~~~~~lvDtpG~~~~~~~~~~ 67 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLG---------------EHLIEITDLPGVYSLVANAEG 67 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEET---------------TEEEEEEECCCCSSCC-----
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEEC---------------CeEEEEEeCCCcccccccccC
Confidence 89999999999999999999887655556666777777777664 24799999999877653
Q ss_pred ------hHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 99 ------CRSILY--SQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 99 ------~~~~~~--~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
+...++ ..+|++|+|+|+++.+++..+..|+. +. ++|+++|+||+|+....+..
T Consensus 68 ~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~---~~---------------~~pvilv~NK~Dl~~~~~~~ 129 (256)
T 3iby_A 68 ISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLF---EL---------------GKPVVVALNMMDIAEHRGIS 129 (256)
T ss_dssp -CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHT---TS---------------CSCEEEEEECHHHHHHTTCE
T ss_pred CCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHH---Hc---------------CCCEEEEEEChhcCCcCCcH
Confidence 455566 89999999999999766655544433 32 68999999999997653222
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.....+++.+| +|+++ +||++|.|++++++.+.+.
T Consensus 130 -------~~~~~l~~~lg-------~~vi~---------~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 130 -------IDTEKLESLLG-------CSVIP---------IQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp -------ECHHHHHHHHC-------SCEEE---------CBGGGTBSHHHHHHHHHTC
T ss_pred -------HHHHHHHHHcC-------CCEEE---------EECCCCCCHHHHHHHHHhh
Confidence 22456777777 57888 9999999999988888653
No 120
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.88 E-value=6.2e-23 Score=187.95 Aligned_cols=152 Identities=17% Similarity=0.167 Sum_probs=111.6
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh-
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD- 98 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~- 98 (333)
..++|+|+|.+|||||||+|+|++..+.....++.+.+.....+.+. ...+.||||||+..+..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~---------------~~~~~liDtpG~~~~~~~ 66 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTT---------------DHQVTLVDLPGTYSLTTI 66 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECS---------------SCEEEEEECCCCSCSCC-
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeC---------------CCceEEEECcCCCccccc
Confidence 46899999999999999999999887655556666666666666654 24588999999877652
Q ss_pred ---------hHHhh--ccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc
Q 019959 99 ---------CRSIL--YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE 167 (333)
Q Consensus 99 ---------~~~~~--~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~ 167 (333)
....+ +..+|++|+|+|+++.+++..+. ..+.+. ++|+++|+||+|+....
T Consensus 67 ~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~---~~l~~~---------------~~p~ivv~NK~Dl~~~~ 128 (274)
T 3i8s_A 67 SSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLT---LQLLEL---------------GIPCIVALNMLDIAEKQ 128 (274)
T ss_dssp ---CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHH---HHHHHH---------------TCCEEEEEECHHHHHHT
T ss_pred cccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHH---HHHHhc---------------CCCEEEEEECccchhhh
Confidence 22233 36999999999999866555444 444444 58999999999997652
Q ss_pred CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 168 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
.+. .....+++.+| +|+++ +||++|.|++++++.+.+
T Consensus 129 --~~~-----~~~~~l~~~lg-------~~~i~---------~SA~~g~gi~el~~~i~~ 165 (274)
T 3i8s_A 129 --NIR-----IEIDALSARLG-------CPVIP---------LVSTRGRGIEALKLAIDR 165 (274)
T ss_dssp --TEE-----ECHHHHHHHHT-------SCEEE---------CCCGGGHHHHHHHHHHHT
T ss_pred --hHH-----HHHHHHHHhcC-------CCEEE---------EEcCCCCCHHHHHHHHHH
Confidence 221 23567777787 57888 999999777776665543
No 121
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.87 E-value=1.7e-21 Score=181.26 Aligned_cols=165 Identities=15% Similarity=0.117 Sum_probs=121.0
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFS-RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
.++...-.|+|+|.+|||||||+|+|++..+.. ...+..+.+........ +..+.+.||||||+.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~--------------~~~~~i~lvDTPG~~ 70 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNI--------------PNEAQIIFLDTPGIY 70 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE--------------TTTEEEEEEECCCCC
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEec--------------CCCCeEEEEECcCCC
Confidence 345667799999999999999999999887642 22222222222222222 226789999999974
Q ss_pred h----------hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 95 R----------YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 95 ~----------~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
. +......++..+|++|+|+|+++..++.....|+..+... ++|+++|+||+|+.
T Consensus 71 ~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---------------~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 71 EPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---------------NKPVIVVINKIDKI 135 (308)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---------------CCCEEEEEECGGGS
T ss_pred ccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---------------CCCEEEEEECccCC
Confidence 4 3356667889999999999999999999988888888764 68999999999997
Q ss_pred CccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 165 AKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 165 ~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.. +... .+....+++.++. ..++++ +||++|.|++++++.+.+.+
T Consensus 136 ~~--~~~~----~~~~~~l~~~~~~-----~~~i~~---------vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 136 GP--AKNV----LPLIDEIHKKHPE-----LTEIVP---------ISALKGANLDELVKTILKYL 180 (308)
T ss_dssp SS--GGGG----HHHHHHHHHHCTT-----CCCEEE---------CBTTTTBSHHHHHHHHHHHS
T ss_pred CC--HHHH----HHHHHHHHHhccC-----CCeEEE---------EeCCCCCCHHHHHHHHHHhC
Confidence 32 1222 3667777777752 145777 99999999999988887654
No 122
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.87 E-value=4.8e-22 Score=175.04 Aligned_cols=175 Identities=18% Similarity=0.203 Sum_probs=112.0
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC---
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG--- 92 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G--- 92 (333)
.+....++|+|+|.+|||||||+++|++..+......+.+.+.......+.. .....+.||||+|
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~------------~~~~~~~l~DtpG~~~ 91 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP------------AAEPVAHLVDLPGYGY 91 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESC------------TTSCSEEEEECCCCCS
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecC------------CCCCcEEEEcCCCCCc
Confidence 4455678999999999999999999998863222223333333333333321 2235689999999
Q ss_pred -------chhhhhhHHhhccC---CcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 93 -------HERYKDCRSILYSQ---INGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 93 -------~e~~~~~~~~~~~~---ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
++.+..+...++.. +|++|+|+|+++..+... ..|+..+... ++|+++|+||+|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~~---------------~~p~i~v~nK~D 155 (223)
T 4dhe_A 92 AEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAPT---------------GKPIHSLLTKCD 155 (223)
T ss_dssp SCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGGG---------------CCCEEEEEECGG
T ss_pred ccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHhc---------------CCCEEEEEeccc
Confidence 45566666666665 888999999998655332 3455555543 689999999999
Q ss_pred CCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 163 VAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 163 l~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+.... .+. ...+...+....+.-......+++++ +||++|.|++++++.+.+.+..
T Consensus 156 l~~~~--~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~---------~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 156 KLTRQ--ESI--NALRATQKSLDAYRDAGYAGKLTVQL---------FSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp GSCHH--HHH--HHHHHHHHHHHHHHHHTCCSCEEEEE---------EBTTTTBSHHHHHHHHHHHHC-
T ss_pred cCChh--hHH--HHHHHHHHHHHhhhhcccCCCCeEEE---------eecCCCcCHHHHHHHHHHhcCc
Confidence 98642 110 00122222222220000001256777 9999999999999998876643
No 123
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=1.9e-22 Score=177.10 Aligned_cols=154 Identities=19% Similarity=0.225 Sum_probs=106.3
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCC---CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFS---RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
....++|+|+|++|||||||+++|++..+.. .+.++++.++ ..+.+.+|||+|++
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~l~Dt~G~~ 66 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----------------------DGSGVTLVDFPGHV 66 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----------------------GGSSCEEEECCCCG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----------------------eCceEEEEECCCcH
Confidence 3456799999999999999999999887643 2444443322 23458999999999
Q ss_pred hhhhhHHhhccC----CcEEEEEEECC-CcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC
Q 019959 95 RYKDCRSILYSQ----INGVIFVHDLS-QRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT 169 (333)
Q Consensus 95 ~~~~~~~~~~~~----ad~vIlV~D~s-~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r 169 (333)
++...+..+++. +|++|+|||++ ++.+|..+..|+.++....... ...++|+++|+||+|+......
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~p~ilv~nK~Dl~~~~~~ 138 (218)
T 1nrj_B 67 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESS--------CENGIDILIACNKSELFTARPP 138 (218)
T ss_dssp GGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHH--------STTCCCEEEEEECTTSTTCCCH
T ss_pred HHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhccccc--------ccCCCCEEEEEEchHhcccCCH
Confidence 999888888877 89999999999 8899999999988886542100 0137899999999999865321
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcC
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY 217 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~ 217 (333)
......+.+++..++...+ ++|+| +||++|.+
T Consensus 139 ~~~~~~l~~~~~~~~~~~~-------~~~~~---------~Sa~~~~~ 170 (218)
T 1nrj_B 139 SKIKDALESEIQKVIERRK-------KSLNE---------VERKINEE 170 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHh-------ccccc---------cccccccc
Confidence 1111122355677777665 46888 99999854
No 124
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.86 E-value=1.5e-21 Score=178.31 Aligned_cols=155 Identities=15% Similarity=0.097 Sum_probs=119.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh-
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD- 98 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~- 98 (333)
+.++|+|+|++|||||||+++|++..+.....++++.+.....+.+. ...+.||||||+..+..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~---------------~~~~~l~DtpG~~~~~~~ 66 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYR---------------EKEFLVVDLPGIYSLTAH 66 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEET---------------TEEEEEEECCCCSCCCSS
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEEC---------------CceEEEEeCCCccccccC
Confidence 35799999999999999999999887755566666777776676664 34599999999877655
Q ss_pred -----hHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCcc
Q 019959 99 -----CRSILY--SQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRG 171 (333)
Q Consensus 99 -----~~~~~~--~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v 171 (333)
....++ .++|++|+|+|+++.+ ....|..++.... .+|+++|+||+|+.... .+
T Consensus 67 ~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--------------~~p~ilv~NK~Dl~~~~--~~ 127 (271)
T 3k53_A 67 SIDELIARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEME--------------VKNIILVLNKFDLLKKK--GA 127 (271)
T ss_dssp CHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHTT--------------CCSEEEEEECHHHHHHH--TC
T ss_pred CHHHHHHHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhcC--------------CCCEEEEEEChhcCccc--cc
Confidence 455555 6899999999999853 3345555665552 38999999999987542 22
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
. .....+++.+| +|+++ +||++|.|++++++.+.+.+
T Consensus 128 ~-----~~~~~l~~~lg-------~~~~~---------~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 128 K-----IDIKKMRKELG-------VPVIP---------TNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp C-----CCHHHHHHHHS-------SCEEE---------CBGGGTBTHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHcC-------CcEEE---------EEeCCCCCHHHHHHHHHHHH
Confidence 2 22667788887 57888 99999999999998887764
No 125
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=9.7e-22 Score=191.39 Aligned_cols=165 Identities=16% Similarity=0.135 Sum_probs=116.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc----
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH---- 93 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~---- 93 (333)
...+||+|+|++|||||||+|+|++..+. ....++.+.+.....+.++ ...+.||||+|+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~---------------~~~~~l~DT~G~~~~~ 237 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYN---------------QQEFVIVDTAGMRKKG 237 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEET---------------TEEEEETTHHHHTCBT
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEEC---------------CeEEEEEECCCcCcCc
Confidence 35689999999999999999999988653 3334444555555566654 235899999997
Q ss_pred ------hhhhhhHH-hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 94 ------ERYKDCRS-ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 94 ------e~~~~~~~-~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
+.|..++. .+++.+|++|+|||+++..+++.+ .|+..+... +.|+++|+||+|+.+.
T Consensus 238 ~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~---------------~~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 238 KVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA---------------GKAVVIVVNKWDAVDK 301 (436)
T ss_dssp TBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT---------------TCEEEEEEECGGGSCC
T ss_pred cccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc---------------CCcEEEEEECccCCCc
Confidence 66766654 378899999999999999998886 577777654 5899999999999865
Q ss_pred cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+.+.. .+..+++.+.+... ..+|+++ +||++|.|++++++.+.+.+..
T Consensus 302 --~~~~~---~~~~~~~~~~l~~~---~~~~~~~---------~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 302 --DESTM---KEFEENIRDHFQFL---DYAPILF---------MSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp --CTTHH---HHHHHHHHHHCGGG---TTSCEEE---------CCTTTCTTGGGHHHHHHHHHHH
T ss_pred --chHHH---HHHHHHHHHhcccC---CCCCEEE---------EecccCCCHHHHHHHHHHHHHH
Confidence 22221 12223333443321 1357777 9999999999999998877654
No 126
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.84 E-value=3.7e-20 Score=171.73 Aligned_cols=155 Identities=21% Similarity=0.203 Sum_probs=104.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh--
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFS-RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER-- 95 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~-- 95 (333)
.+..+|+|+|.+|||||||+|+|++..+.. ...+..+.+.....+. .....+.||||||..+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~---------------~~~~~l~l~DTpG~~~~~ 69 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT---------------EGRRQIVFVDTPGLHKPM 69 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEE---------------ETTEEEEEEECCCCCCCC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEE---------------eCCcEEEEecCccccchh
Confidence 345689999999999999999999887642 2222112222122222 2357899999999765
Q ss_pred ------hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHH-HHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC
Q 019959 96 ------YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWA-VEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 168 (333)
Q Consensus 96 ------~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~-~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~ 168 (333)
+......+++.+|++|+|||+++..+... .|+ ..+.... .++|+++|+||+|+....
T Consensus 70 ~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~-------------~~~p~ilV~NK~Dl~~~~- 133 (301)
T 1wf3_A 70 DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPLV-------------GKVPILLVGNKLDAAKYP- 133 (301)
T ss_dssp SHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGT-------------TTSCEEEEEECGGGCSSH-
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhc-------------CCCCEEEEEECcccCCch-
Confidence 55566678999999999999998866553 454 4454432 268999999999997541
Q ss_pred CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 169 TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 169 r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
.....+++.+ ..+ .++++ +||++|.|++++++.+.+
T Consensus 134 ---------~~~~~~~~~~--~~~---~~~~~---------iSA~~g~gv~~l~~~l~~ 169 (301)
T 1wf3_A 134 ---------EEAMKAYHEL--LPE---AEPRM---------LSALDERQVAELKADLLA 169 (301)
T ss_dssp ---------HHHHHHHHHT--STT---SEEEE---------CCTTCHHHHHHHHHHHHT
T ss_pred ---------HHHHHHHHHh--cCc---CcEEE---------EeCCCCCCHHHHHHHHHH
Confidence 1023333333 111 34666 999999777777766654
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.84 E-value=9e-20 Score=173.00 Aligned_cols=161 Identities=18% Similarity=0.182 Sum_probs=117.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh-
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK- 97 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~- 97 (333)
...++|+|+|.+|||||||+++|++..+.....+..+.+.....+.. ....+.+|||+|...+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~---------------~~~~~~l~Dt~G~~~~~~ 229 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED---------------GYFRYQIIDTPGLLDRPI 229 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEE---------------TTEEEEEEECTTTSSSCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEe---------------cCceEEEEeCCCccccch
Confidence 45679999999999999999999987643222222222333333332 24679999999964321
Q ss_pred --------hhHHhhccCCcEEEEEEECCCcc--cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc
Q 019959 98 --------DCRSILYSQINGVIFVHDLSQRR--TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE 167 (333)
Q Consensus 98 --------~~~~~~~~~ad~vIlV~D~s~~~--S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~ 167 (333)
.....+...+|++|+|+|+++.. +++....|+.++..... +.|+++|+||+|+....
T Consensus 230 ~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-------------~~piilV~NK~Dl~~~~ 296 (357)
T 2e87_A 230 SERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-------------DLPFLVVINKIDVADEE 296 (357)
T ss_dssp TTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-------------TSCEEEEECCTTTCCHH
T ss_pred hhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-------------CCCEEEEEECcccCChH
Confidence 12223455799999999999887 78888899999887632 68999999999998642
Q ss_pred CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 168 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
. .+++.+++...+ +++++ |||++|.|++++++.+.+.+..
T Consensus 297 --~------~~~~~~~~~~~~-------~~~~~---------iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 297 --N------IKRLEKFVKEKG-------LNPIK---------ISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp --H------HHHHHHHHHHTT-------CCCEE---------CBTTTTBTHHHHHHHHHHHHHH
T ss_pred --H------HHHHHHHHHhcC-------CCeEE---------EeCCCCcCHHHHHHHHHHHHHH
Confidence 1 244556666554 56777 9999999999999999988755
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.84 E-value=1.7e-20 Score=184.04 Aligned_cols=156 Identities=13% Similarity=0.124 Sum_probs=96.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
.+||+|+|.+|||||||+|+|++... .....++.+.++....+.++ .+.+.||||+|++++...
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~---------------g~~l~liDT~G~~~~~~~ 297 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHD---------------KTMFRLTDTAGLREAGEE 297 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEET---------------TEEEEEEC----------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC---------------CeEEEEEECCCCCcchhH
Confidence 47999999999999999999998753 33444455666666666664 367999999998776543
Q ss_pred H--------HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCcc
Q 019959 100 R--------SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRG 171 (333)
Q Consensus 100 ~--------~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v 171 (333)
. ..++..+|++|+|||++++.+++++..+...+... .++|+++|+||+|+.... .
T Consensus 298 ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--------------~~~piIvV~NK~Dl~~~~--~- 360 (476)
T 3gee_A 298 IEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH--------------PAAKFLTVANKLDRAANA--D- 360 (476)
T ss_dssp ----------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--------------TTSEEEEEEECTTSCTTT--H-
T ss_pred HHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc--------------CCCCEEEEEECcCCCCcc--c-
Confidence 3 33678999999999999999886544443333333 258999999999998652 1
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
...+++.+. +. +++++ |||++|.|++++++.+.+.+.
T Consensus 361 ------~~~~~l~~~-~~------~~~i~---------vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 361 ------ALIRAIADG-TG------TEVIG---------ISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp ------HHHHHHHHH-HT------SCEEE---------CBTTTTBSHHHHHHHHTHHHH
T ss_pred ------hhHHHHHhc-CC------CceEE---------EEECCCCCHHHHHHHHHHHHh
Confidence 112334443 21 35777 999999999999998887653
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.83 E-value=8.4e-21 Score=185.80 Aligned_cols=167 Identities=16% Similarity=0.126 Sum_probs=117.8
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC----
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGS-SFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG---- 92 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G---- 92 (333)
....+||+++|.+|||||||+++|++.. ......++.+.+.....+.++ ...+.||||+|
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~---------------~~~~~l~DT~G~~~~ 256 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYN---------------QQEFVIVDTAGMRKK 256 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEET---------------TEEEEETTGGGTTTB
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEEC---------------CceEEEEECCCCCcC
Confidence 3456899999999999999999999764 233344444555555555554 23799999999
Q ss_pred ------chhhhhhHHh-hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC
Q 019959 93 ------HERYKDCRSI-LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 165 (333)
Q Consensus 93 ------~e~~~~~~~~-~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~ 165 (333)
+++|..+... +++.+|++|+|+|+++..+.. ...|+..+... ++|+|||+||+|+.+
T Consensus 257 ~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~~---------------~~~~ilv~NK~Dl~~ 320 (456)
T 4dcu_A 257 GKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHEA---------------GKAVVIVVNKWDAVD 320 (456)
T ss_dssp TTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHHT---------------TCEEEEEEECGGGSC
T ss_pred cccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHHc---------------CCCEEEEEEChhcCC
Confidence 7888877664 788999999999999865533 34566666554 589999999999986
Q ss_pred ccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 166 KEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 166 ~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
. +.+. .+++.+.+++.-. +...+|+++ |||++|.|++++|+.+.+.+...
T Consensus 321 ~--~~~~----~~~~~~~~~~~~~--~~~~~~~~~---------~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 321 K--DEST----MKEFEENIRDHFQ--FLDYAPILF---------MSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp C--CSSH----HHHHHHHHHHHCG--GGTTSCEEE---------CCTTTCTTGGGHHHHHHHHHHHH
T ss_pred C--chHH----HHHHHHHHHHhcc--cCCCCCEEE---------EcCCCCcCHHHHHHHHHHHHHHh
Confidence 5 3333 2555555554311 111257777 99999999999999998876543
No 130
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.83 E-value=1.3e-20 Score=177.54 Aligned_cols=157 Identities=16% Similarity=0.136 Sum_probs=115.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC--CCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh----h
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSR--PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER----Y 96 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~----~ 96 (333)
+|+|||.+|||||||+++|++...... ...|.... ...+.++ ....+.||||||..+ +
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~--~g~v~~~--------------~~~~~~l~DtPG~i~~a~~~ 223 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPN--LGMVETD--------------DGRSFVMADLPGLIEGAHQG 223 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCC--EEEEECS--------------SSCEEEEEEHHHHHHHTTCT
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCce--EEEEEeC--------------CCceEEEecCCCCccccccc
Confidence 689999999999999999997654222 22333332 3344443 125689999999543 3
Q ss_pred hhhHHhhcc---CCcEEEEEEECCC---cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 97 KDCRSILYS---QINGVIFVHDLSQ---RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 97 ~~~~~~~~~---~ad~vIlV~D~s~---~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
..+...|++ .+|++|+|+|+++ +.+++.+..|+.++..+.. ...++|++||+||+|+...
T Consensus 224 ~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~----------~l~~~p~ilV~NK~Dl~~~---- 289 (342)
T 1lnz_A 224 VGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL----------RLTERPQIIVANKMDMPEA---- 289 (342)
T ss_dssp TTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS----------STTTSCBCBEEECTTSTTH----
T ss_pred chhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhh----------hhcCCCEEEEEECccCCCC----
Confidence 344455554 5999999999999 8899999999999988631 1237899999999999764
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+..+++++.++.. +++++ +||+++.|++++++.|.+.+
T Consensus 290 ------~e~~~~l~~~l~~~-----~~v~~---------iSA~tg~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 290 ------AENLEAFKEKLTDD-----YPVFP---------ISAVTREGLRELLFEVANQL 328 (342)
T ss_dssp ------HHHHHHHHHHCCSC-----CCBCC---------CSSCCSSTTHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHhhcC-----CCEEE---------EECCCCcCHHHHHHHHHHHH
Confidence 14566777776531 46777 99999999999999888765
No 131
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.83 E-value=4.4e-20 Score=179.86 Aligned_cols=151 Identities=20% Similarity=0.192 Sum_probs=102.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh------
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER------ 95 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~------ 95 (333)
+|+|||.+|||||||+|+|++.... ....++++.+.....+.++ ...+.||||+|.+.
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~---------------~~~~~l~DT~G~~~~~~~~~ 67 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWY---------------GKTFKLVDTCGVFDNPQDII 67 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEET---------------TEEEEEEECTTTTSSGGGCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEEC---------------CeEEEEEECCCccccccchH
Confidence 8999999999999999999987642 3445555566666666664 24589999999654
Q ss_pred ---hhhhHHhhccCCcEEEEEEECCCcccHHH--HHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 96 ---YKDCRSILYSQINGVIFVHDLSQRRTKTS--LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 96 ---~~~~~~~~~~~ad~vIlV~D~s~~~S~~~--l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
+......+++.+|++|+|||+++..+... +..|+.. . ++|++||+||+|+...
T Consensus 68 ~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~---~---------------~~p~ilv~NK~D~~~~---- 125 (439)
T 1mky_A 68 SQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRK---S---------------TVDTILVANKAENLRE---- 125 (439)
T ss_dssp CHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH---H---------------TCCEEEEEESCCSHHH----
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---c---------------CCCEEEEEeCCCCccc----
Confidence 34556678999999999999998766543 3334332 2 5799999999998632
Q ss_pred cCcccHHHHH-HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAA-RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 171 v~~~~~~~~~-~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+ ...+ .++. .+|+. ++++ +||++|.|++++++.+.+.+..
T Consensus 126 ~-----~~~~~~~~~-~lg~~------~~~~---------iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 126 F-----EREVKPELY-SLGFG------EPIP---------VSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp H-----HHHTHHHHG-GGSSC------SCEE---------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred c-----HHHHHHHHH-hcCCC------CEEE---------EeccCCCCHHHHHHHHHHhccc
Confidence 0 0222 3333 34431 4566 9999999999999999887753
No 132
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.83 E-value=4e-21 Score=185.79 Aligned_cols=161 Identities=16% Similarity=0.114 Sum_probs=112.0
Q ss_pred cCCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCC
Q 019959 13 LNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDIS 91 (333)
Q Consensus 13 ~~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~ 91 (333)
++..+....++|+|+|..|||||||+++|++..+. ....++.+.+...+.+.+. ....+.||||+
T Consensus 26 m~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~--------------~~~~l~liDTp 91 (423)
T 3qq5_A 26 MRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELH--------------PIGPVTLVDTP 91 (423)
T ss_dssp CCC---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEET--------------TTEEEEEEECS
T ss_pred cccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEEC--------------CCCeEEEEECc
Confidence 34556677899999999999999999999988763 3334444556666666664 12379999999
Q ss_pred Cchhhhhh-------HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 92 GHERYKDC-------RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 92 G~e~~~~~-------~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
|++++..+ ...++..+|++|+|||++.. .....|+..+.+. ++|+++|+||+|+.
T Consensus 92 G~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---------------~~piIvV~NK~Dl~ 153 (423)
T 3qq5_A 92 GLDDVGELGRLRVEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---------------EIPFVVVVNKIDVL 153 (423)
T ss_dssp STTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---------------TCCEEEECCCCTTT
T ss_pred CCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---------------CCCEEEEEeCcCCC
Confidence 98876544 34578899999999999333 3345688777776 58999999999998
Q ss_pred CccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 165 AKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 165 ~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.... . +.++++++.++ +++++ +||++|.|++++++.+.+.+
T Consensus 154 ~~~~--~------~~~~~l~~~~g-------~~v~~---------vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 154 GEKA--E------ELKGLYESRYE-------AKVLL---------VSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp TCCC--T------HHHHHSSCCTT-------CCCCC---------CSSCCTTSTTTHHHHHHHHS
T ss_pred CccH--H------HHHHHHHHHcC-------CCEEE---------EECCCCCCHHHHHHHHHHhh
Confidence 7532 1 34555554444 56888 99999999999998887765
No 133
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.81 E-value=1.6e-19 Score=175.76 Aligned_cols=169 Identities=17% Similarity=0.170 Sum_probs=113.5
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCC-------------------------------CCCCCcccceeEEEEEE
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSS-------------------------------FSRPSQTIGCTVGVKHI 63 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~ 63 (333)
..+....++|+++|.+++|||||+++|++..- ..+..+.++.+.....+
T Consensus 11 ~~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~ 90 (439)
T 3j2k_7 11 GAPKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYF 90 (439)
T ss_pred CCCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEE
Confidence 33456678999999999999999999964311 11112334444444444
Q ss_pred EeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCccc---HH---HHHHHHHHHHhcCC
Q 019959 64 TYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRT---KT---SLQKWAVEIATSGT 137 (333)
Q Consensus 64 ~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S---~~---~l~~~~~~i~~~~~ 137 (333)
.. ....+.||||||+++|......++..+|++|+|+|+++... |+ .....+..+...
T Consensus 91 ~~---------------~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~-- 153 (439)
T 3j2k_7 91 ET---------------EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-- 153 (439)
T ss_pred ec---------------CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc--
Confidence 43 24579999999999999988889999999999999998642 11 122222233333
Q ss_pred CCCCCCCCCCCCCCCc-EEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCc
Q 019959 138 FSAPLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR 216 (333)
Q Consensus 138 ~~~~~~~~~~~~~~~P-iivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~ 216 (333)
++| +|||+||+|+...+..+....++.++...+++.+|+..- ..+++++ +||++|.
T Consensus 154 -------------~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~-~~~~~i~---------iSA~~G~ 210 (439)
T 3j2k_7 154 -------------GVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPK-KDIHFMP---------CSGLTGA 210 (439)
T ss_pred -------------CCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhccccc-CCeeEEE---------eeccCCc
Confidence 466 999999999964221111122334566677777775321 1357777 9999999
Q ss_pred CHHHHHH
Q 019959 217 YDKEAVM 223 (333)
Q Consensus 217 ~v~~~~~ 223 (333)
|++++.+
T Consensus 211 ni~~l~~ 217 (439)
T 3j2k_7 211 NLKEQSD 217 (439)
T ss_pred ccccccc
Confidence 9998665
No 134
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.80 E-value=5.4e-20 Score=158.08 Aligned_cols=121 Identities=21% Similarity=0.265 Sum_probs=87.7
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCC---CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFS---RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
......++|+|+|++|||||||+++|++..+.. ...++.+.++ ..+.+.+|||+|
T Consensus 43 ~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~l~Dt~G 100 (193)
T 2ged_A 43 GGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----------------------DGSGVTLVDFPG 100 (193)
T ss_dssp ---CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----------------------CCTTCSEEEETT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----------------------cCCeEEEEECCC
Confidence 344667899999999999999999999887643 2222222221 234488999999
Q ss_pred chhhhhhHHhhccC----CcEEEEEEECC-CcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 93 HERYKDCRSILYSQ----INGVIFVHDLS-QRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 93 ~e~~~~~~~~~~~~----ad~vIlV~D~s-~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
++.+...+..++.. +|++|+|||++ +..++..+..|+..+....... ...++|+++|+||+|+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 101 HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESS--------CENGIDILIACNKSELFTA 171 (193)
T ss_dssp CCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHH--------STTCCCEEEEEECTTSTTC
T ss_pred CchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhc--------cccCCCEEEEEEchHhcCC
Confidence 99887777777665 89999999999 8999999988988876542100 0136899999999999865
No 135
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.80 E-value=7.1e-19 Score=169.48 Aligned_cols=175 Identities=18% Similarity=0.187 Sum_probs=115.8
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCC-----------ccCCCCCceEEEE
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSN-----------SIKGDSERDFFVE 86 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~-----------~i~~~~~~~~~l~ 86 (333)
....++|+++|.+|+|||||+++|++...... .+ +....+.......... ...........+.
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK----LG--YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRIS 78 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS----SE--EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccc----cC--ccccceeeccccccccceecccccccccccccccccceEE
Confidence 34568999999999999999999997543221 11 1111111000000000 0000112337899
Q ss_pred EEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 87 LWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 87 i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
||||||+++|......++..+|++|+|+|+++..++.....|+..+.... ..|+++|+||+|+.+.
T Consensus 79 iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--------------~~~iivviNK~Dl~~~ 144 (403)
T 3sjy_A 79 FIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--------------VKNLIIVQNKVDVVSK 144 (403)
T ss_dssp EEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--------------CCCEEEEEECGGGSCH
T ss_pred EEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--------------CCCEEEEEECccccch
Confidence 99999999999999899999999999999999887788888887776663 3589999999999864
Q ss_pred cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+. .. +..++..++.+..+. ..+|+++ +||++|.|++++++.+.+.+
T Consensus 145 ~~--~~--~~~~~i~~~l~~~~~----~~~~ii~---------vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 145 EE--AL--SQYRQIKQFTKGTWA----ENVPIIP---------VSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HH--HH--HHHHHHHHHHTTSTT----TTCCEEE---------CBTTTTBSHHHHHHHHHHHS
T ss_pred HH--HH--HHHHHHHHHHHhhCC----CCCEEEE---------EECCCCcChHHHHHHHHHhC
Confidence 21 00 011223333322222 2467887 99999999998888776543
No 136
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.80 E-value=1e-19 Score=178.78 Aligned_cols=152 Identities=18% Similarity=0.219 Sum_probs=112.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch-hhh--
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE-RYK-- 97 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e-~~~-- 97 (333)
++|+|+|.+|||||||+|+|++..+ .....++.+.++....+.++ ...+.||||+|.+ ++.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~---------------g~~~~l~DTaG~~~~~~~~ 308 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR---------------GILFRIVDTAGVRSETNDL 308 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEET---------------TEEEEEEESSCCCSSCCTT
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecC---------------CeEEEEEECCCccccchhh
Confidence 7999999999999999999998753 23444445666666777664 3568999999987 543
Q ss_pred ------hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCcc
Q 019959 98 ------DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRG 171 (333)
Q Consensus 98 ------~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v 171 (333)
.....++..+|++|+|||++++.+++....| ..+ .+.|+++|+||+|+... +
T Consensus 309 ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il-~~l-----------------~~~piivV~NK~DL~~~----~ 366 (482)
T 1xzp_A 309 VERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKIL-ERI-----------------KNKRYLVVINKVDVVEK----I 366 (482)
T ss_dssp CCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHH-HHH-----------------TTSSEEEEEEECSSCCC----C
T ss_pred HHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHH-HHh-----------------cCCCEEEEEECcccccc----c
Confidence 2234578899999999999999888775433 332 15799999999999743 2
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
. .+++.+++ +. .+++++ |||++|.|++++++.+.+.+..
T Consensus 367 ~----~~~~~~~~---~~-----~~~~i~---------iSAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 367 N----EEEIKNKL---GT-----DRHMVK---------ISALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp C----HHHHHHHH---TC-----STTEEE---------EEGGGTCCHHHHHHHHHHHTHH
T ss_pred C----HHHHHHHh---cC-----CCcEEE---------EECCCCCCHHHHHHHHHHHHhh
Confidence 2 23344332 21 256777 9999999999999999887664
No 137
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.80 E-value=9.3e-19 Score=166.35 Aligned_cols=166 Identities=16% Similarity=0.056 Sum_probs=112.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc---------
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH--------- 93 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~--------- 93 (333)
.|+|+|++|||||||+|+|++..+.....+..+.+.....+.++ + ..+.+|||+|.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~-------------g--~~v~l~DT~G~i~~lp~~lv 245 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPIN-------------N--RKIMLVDTVGFIRGIPPQIV 245 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEET-------------T--EEEEEEECCCBCSSCCGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEEC-------------C--EEEEEEeCCCchhcCCHHHH
Confidence 49999999999999999999887654444444555666777765 2 46899999996
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcc--cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCcc
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRR--TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRG 171 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~--S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v 171 (333)
+.|..+.. .+..+|++++|+|++++. .++.+..|...+..... .+.|+++|+||+|+.... .
T Consensus 246 e~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~------------~~~p~ilV~NK~Dl~~~~---~ 309 (364)
T 2qtf_A 246 DAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGV------------SGKPILVTLNKIDKINGD---L 309 (364)
T ss_dssp HHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTC------------CSCCEEEEEECGGGCCSC---H
T ss_pred HHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCc------------CCCCEEEEEECCCCCCch---H
Confidence 33544444 478999999999999987 66677777766665532 368999999999997531 0
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
....+.+..++..++.. ..++++ +||++|.|++++++.+.+.+....+
T Consensus 310 --~~~~~~~~~l~~~l~~~----~~~~~~---------~SA~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 310 --YKKLDLVEKLSKELYSP----IFDVIP---------ISALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp --HHHHHHHHHHHHHHCSC----EEEEEE---------CBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred --HHHHHHHHHHHHHhcCC----CCcEEE---------EECCCCcCHHHHHHHHHHHhcccCC
Confidence 01123344455555211 134566 9999999999999999887766544
No 138
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.79 E-value=2e-18 Score=166.64 Aligned_cols=174 Identities=17% Similarity=0.141 Sum_probs=104.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC---CCCCCCCc--ccceeEEEEEEEeCCCCC---CCCccCCCCC----ceEEEE
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG---SSFSRPSQ--TIGCTVGVKHITYGSSGS---SSNSIKGDSE----RDFFVE 86 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~---~~~~~~~~--t~~~~~~~~~~~~~~~~~---~~~~i~~~~~----~~~~l~ 86 (333)
...++|+++|..++|||||+++|++. .+..+..+ |+...+....+....... +..... ..+ ....+.
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~-~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCP-NCLAETEFLRRVS 84 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCT-TSCCBCEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEeccccccccccccccccccccccc-ccCcccccccEEE
Confidence 45689999999999999999999954 33333334 555555444432110000 000000 001 137899
Q ss_pred EEeCCCchhhhhhHHhhccCCcEEEEEEECCCc----ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 87 LWDISGHERYKDCRSILYSQINGVIFVHDLSQR----RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 87 i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~----~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
||||||+++|.......+..+|++|+|+|+++. .+++++..| .... ..|+++|+||+|
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l~--------------~~~iivv~NK~D 146 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EILG--------------IDKIIIVQNKID 146 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHTT--------------CCCEEEEEECTT
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHcC--------------CCeEEEEEEccC
Confidence 999999999988877778889999999999964 344444332 2221 247999999999
Q ss_pred CCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 163 VAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 163 l~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+.+...... ..++++++++.... ..+++++ +||++|.|++++++.|.+.
T Consensus 147 l~~~~~~~~----~~~~i~~~l~~~~~----~~~~~i~---------vSA~~g~gi~~L~~~l~~~ 195 (408)
T 1s0u_A 147 LVDEKQAEE----NYEQIKEFVKGTIA----ENAPIIP---------ISAHHEANIDVLLKAIQDF 195 (408)
T ss_dssp SSCTTTTTT----HHHHHHHHHTTSTT----TTCCEEE---------C------CHHHHHHHHHHH
T ss_pred CCCHHHHHH----HHHHHHHHHhhcCC----CCCeEEE---------eeCCCCCCHHHHHHHHHHh
Confidence 986531111 23556666654322 2367888 9999999998888777653
No 139
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.79 E-value=3.9e-19 Score=174.97 Aligned_cols=163 Identities=16% Similarity=0.161 Sum_probs=112.2
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCC-------CCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEe
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGS-------SFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWD 89 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~D 89 (333)
.....++|+++|..++|||||+++|++.. +..+..+.++.+.....+.++ ...+.|||
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~---------------~~~i~iiD 79 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE---------------NYRITLVD 79 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET---------------TEEEEECC
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC---------------CEEEEEEE
Confidence 34567899999999999999999999766 223333333444444444443 36799999
Q ss_pred CCCchhhhhhHHhhccCCcEEEEEEECCCc---ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 90 ISGHERYKDCRSILYSQINGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 90 t~G~e~~~~~~~~~~~~ad~vIlV~D~s~~---~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
|||+++|......++..+|++|+|+|+++. .+++.+ ..+... ++|+|+|+||+|+.+.
T Consensus 80 tPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~~---------------~ip~IvviNK~Dl~~~ 140 (482)
T 1wb1_A 80 APGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM----LILDHF---------------NIPIIVVITKSDNAGT 140 (482)
T ss_dssp CSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH----HHHHHT---------------TCCBCEEEECTTSSCH
T ss_pred CCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH----HHHHHc---------------CCCEEEEEECCCcccc
Confidence 999999988888889999999999999984 344333 223333 5788999999999863
Q ss_pred cCCccCcccHHHHHHHHHHHc-CCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 167 EGTRGSSGNLVDAARQWVEKQ-GLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~-~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
... .++.++++++++.. ++. .+++++ +||++|.|++++++.|.+.+-
T Consensus 141 ~~~----~~~~~~l~~~l~~~~~~~----~~~ii~---------vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 141 EEI----KRTEMIMKSILQSTHNLK----NSSIIP---------ISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp HHH----HHHHHHHHHHHHHSSSGG----GCCEEE---------CCTTTCTTHHHHHHHHHHHHH
T ss_pred hhH----HHHHHHHHHHHhhhcccc----cceEEE---------EECcCCCCHHHHHHHHHHhhc
Confidence 211 11235555666655 432 367777 999999999999888887664
No 140
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.79 E-value=1.7e-18 Score=156.51 Aligned_cols=172 Identities=16% Similarity=0.169 Sum_probs=106.1
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCcc-cceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGS-SFSRPSQT-IGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~-~~~~~~~t-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
+....++|+|+|.+|||||||+++|++.. +.....++ ++.+.....+.++ ...+.||||||+.
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~i~iiDTpG~~ 82 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG---------------NREIVIIDTPDMF 82 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET---------------TEEEEEEECCGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC---------------CCEEEEEECcCCC
Confidence 44567899999999999999999999876 44444443 3444444444443 3569999999975
Q ss_pred hhh-----------hhHHhhccCCcEEEEEEECCCcccH-HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEee-Cc
Q 019959 95 RYK-----------DCRSILYSQINGVIFVHDLSQRRTK-TSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN-KA 161 (333)
Q Consensus 95 ~~~-----------~~~~~~~~~ad~vIlV~D~s~~~S~-~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgN-K~ 161 (333)
.+. .....+++.+|++|+|||+++.... ..+..|+.++.... ...|+++|+| |+
T Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~i~vv~nK~ 149 (260)
T 2xtp_A 83 SWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-------------AMGHTIVLFTHKE 149 (260)
T ss_dssp GSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-------------GGGGEEEEEECGG
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-------------hhccEEEEEEccc
Confidence 542 2223367899999999999963322 22334444432211 1245555555 99
Q ss_pred CCCCccCCccCcccH----HHHHHHHHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 162 DVAAKEGTRGSSGNL----VDAARQWVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 162 Dl~~~~~r~v~~~~~----~~~~~~~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
|+.... +.. .+ .+.++.+++..+.... +. + ++ +||++|.|++++|+.+.+.+...
T Consensus 150 Dl~~~~---~~~-~i~~~~~~~~~~~~~~~~~~~~~~~--~-~~---------~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 150 DLNGGS---LMD-YMHDSDNKALSKLVAACGGRICAFN--N-RA---------EGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp GGTTCC---HHH-HHHHCCCHHHHHHHHHTTTCEEECC--T-TC---------CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCcc---HHH-HHHhcchHHHHHHHHHhCCeEEEec--C-cc---------cccccHHHHHHHHHHHHHHHHhC
Confidence 997431 110 00 0234556666664211 11 1 55 99999999999998888876553
No 141
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.79 E-value=7.5e-20 Score=178.05 Aligned_cols=152 Identities=16% Similarity=0.118 Sum_probs=95.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch-------
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE------- 94 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e------- 94 (333)
.+|+|||.+|||||||+|+|++..+. ....+.|.+.......+. -....+.||||+|++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~-------------~~~~~~~l~DT~G~~~~~~~~~ 69 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAE-------------WLNYDFNLIDTGGIDIGDEPFL 69 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECT-------------TCSSCCEEEC---------CHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEE-------------ECCceEEEEECCCCCCcchhHH
Confidence 59999999999999999999987653 122333443333333322 123458999999985
Q ss_pred -hhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 95 -RYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 95 -~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
++......++..+|++|+|+|+++..++.. .|+..+... .+.|++||+||+|+..... .
T Consensus 70 ~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~--------------~~~pvilv~NK~D~~~~~~-~--- 129 (436)
T 2hjg_A 70 AQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR--------------TKKPVVLAVNKLDNTEMRA-N--- 129 (436)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT--------------CCSCEEEEEECCCC------C---
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH--------------cCCCEEEEEECccCccchh-h---
Confidence 667777788999999999999999877654 344443332 2689999999999975411 0
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+.++. .+|+. ++++ +||++|.|++++++.+.+.+
T Consensus 130 ------~~~~~-~lg~~------~~~~---------iSA~~g~gv~~L~~~i~~~l 163 (436)
T 2hjg_A 130 ------IYDFY-SLGFG------EPYP---------ISGTHGLGLGDLLDAVAEHF 163 (436)
T ss_dssp ------CCSSG-GGSSC------CCEE---------CBTTTTBTHHHHHHHHHHTG
T ss_pred ------HHHHH-HcCCC------CeEE---------EeCcCCCChHHHHHHHHHhc
Confidence 11111 23321 3555 99999999999998887654
No 142
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.79 E-value=5.2e-19 Score=167.28 Aligned_cols=134 Identities=16% Similarity=0.185 Sum_probs=98.2
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECC----------CcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLS----------QRRTKTSLQKWAVEIATSGTFSAPLASGGPGGL 150 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s----------~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 150 (333)
..+.+.||||+|+++|+.++..+|++++++|+|||++ +..+|+++..|+..+..... ..
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~-----------~~ 249 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC-----------FE 249 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGG-----------GS
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccc-----------cC
Confidence 5789999999999999999999999999999999998 78899999999999876532 13
Q ss_pred CCcEEEEeeCcCCCCccCCccC---------------cccHHHHHHHHHHH-c------CCCCC--CcCCCccccCCCCC
Q 019959 151 PVPYVVIGNKADVAAKEGTRGS---------------SGNLVDAARQWVEK-Q------GLLPS--SEELPLTESFPGGG 206 (333)
Q Consensus 151 ~~PiivVgNK~Dl~~~~~r~v~---------------~~~~~~~~~~~~~~-~------~~~~~--~~~~p~~E~~~~~~ 206 (333)
++|+||||||+||..+....+. ...-.+++.+++.+ + .-..- ...+.++|
T Consensus 250 ~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~e------ 323 (354)
T 2xtz_A 250 KTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYR------ 323 (354)
T ss_dssp SCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEE------
T ss_pred CCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEE------
Confidence 7999999999999654211111 00114677777543 1 10000 00133566
Q ss_pred ceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 207 GLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 207 ~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
|||+++.||+++|+.+.+.+++..+
T Consensus 324 ---TSA~d~~nV~~vF~~v~~~I~~~~l 348 (354)
T 2xtz_A 324 ---TTALDQKLVKKTFKLVDETLRRRNL 348 (354)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---EEeecchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887655
No 143
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.79 E-value=4.7e-19 Score=174.58 Aligned_cols=159 Identities=13% Similarity=0.168 Sum_probs=103.7
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC--C-----------------------------CCCCcccceeEEEEEEEeCCC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSS--F-----------------------------SRPSQTIGCTVGVKHITYGSS 68 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~~~~~~~ 68 (333)
..+||+|+|.+|+|||||+++|++... . .+... |.++......+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~--GiTi~~~~~~~~-- 107 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERER--GVTVSICTSHFS-- 107 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------C--CSSCCCCEEEEE--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhc--CcceEeeeEEEe--
Confidence 468999999999999999999985511 1 01111 222222222222
Q ss_pred CCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHH------HHHHHHHHHhcCCCCCCC
Q 019959 69 GSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTS------LQKWAVEIATSGTFSAPL 142 (333)
Q Consensus 69 ~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~------l~~~~~~i~~~~~~~~~~ 142 (333)
...+.+.||||||+++|......++..+|++|+|+|+++..++.. ....+..+....
T Consensus 108 -----------~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~------ 170 (483)
T 3p26_A 108 -----------THRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG------ 170 (483)
T ss_dssp -----------CSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT------
T ss_pred -----------cCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC------
Confidence 245679999999999999999999999999999999999765432 122222222221
Q ss_pred CCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHH
Q 019959 143 ASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKE 220 (333)
Q Consensus 143 ~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~ 220 (333)
..|+|||+||+|+.+. +.....++.+++..+.+.+|+.. ..++|++ +||++|.|+++
T Consensus 171 --------~~~iIvviNK~Dl~~~--~~~~~~~i~~~~~~~l~~~g~~~--~~~~~i~---------iSA~~g~gi~e 227 (483)
T 3p26_A 171 --------IHNLIIAMNKMDNVDW--SQQRFEEIKSKLLPYLVDIGFFE--DNINWVP---------ISGFSGEGVYK 227 (483)
T ss_dssp --------CCCEEEEEECGGGGTT--CHHHHHHHHHHHHHHHHHHTCCG--GGEEEEE---------CCSSSCTTSSS
T ss_pred --------CCcEEEEEECcCcccc--hHHHHHHHHHHHHHHHHHcCCCc--ccceEEE---------EeeecCCCccc
Confidence 2469999999999863 22222233455666666667531 1257777 99999999975
No 144
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.79 E-value=2.4e-19 Score=175.27 Aligned_cols=151 Identities=18% Similarity=0.176 Sum_probs=101.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
.+||+|+|++|||||||+|+|++..+. ....++.+.++....+.++ .+.+.||||+|...+...
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~---------------g~~v~liDT~G~~~~~~~ 288 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVG---------------GIPVQVLDTAGIRETSDQ 288 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEET---------------TEEEEECC----------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEEC---------------CEEEEEEECCccccchhH
Confidence 479999999999999999999976432 3334455566656666664 356899999997665433
Q ss_pred H--------HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCcc
Q 019959 100 R--------SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRG 171 (333)
Q Consensus 100 ~--------~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v 171 (333)
. ..++..+|++|+|||++++.++.. ..|+..+ ...|+++|+||+|+.... .+
T Consensus 289 ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l-----------------~~~piivV~NK~Dl~~~~--~~ 348 (462)
T 3geh_A 289 VEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV-----------------KHRPLILVMNKIDLVEKQ--LI 348 (462)
T ss_dssp ----------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH-----------------TTSCEEEEEECTTSSCGG--GS
T ss_pred HHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc-----------------cCCcEEEEEECCCCCcch--hh
Confidence 2 235789999999999999887765 4555554 146999999999998652 11
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
. .+..+...+++++ +||++|.|++++++.+.+.+.
T Consensus 349 ~---------------~~~~~~~~~~~i~---------iSAktg~Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 349 T---------------SLEYPENITQIVH---------TAAAQKQGIDSLETAILEIVQ 383 (462)
T ss_dssp T---------------TCCCCTTCCCEEE---------EBTTTTBSHHHHHHHHHHHHT
T ss_pred H---------------HHHHhccCCcEEE---------EECCCCCCHHHHHHHHHHHHh
Confidence 1 0111111356777 999999999999988877653
No 145
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.79 E-value=1.6e-20 Score=186.29 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=117.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+..+|+|+|.+++|||||+++|++..+.....++++.++....+.++ ....+.||||||++.|..+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~--------------~g~~i~~iDTPGhe~f~~~ 68 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP--------------SGEKITFLDTPGHAAFSAM 68 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS--------------CSSCCBCEECSSSCCTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC--------------CCCEEEEEECCChHHHHHH
Confidence 34589999999999999999999776655555565555544444332 1235889999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..++..+|++|+|||+++....+....| ..+... ++|++||+||+|+.......+. +.
T Consensus 69 ~~~~~~~aD~vILVVDa~dg~~~qt~e~l-~~~~~~---------------~vPiIVViNKiDl~~~~~~~v~-----~~ 127 (537)
T 3izy_P 69 RARGTQVTDIVILVVAADDGVMKQTVESI-QHAKDA---------------HVPIVLAINKCDKAEADPEKVK-----KE 127 (537)
T ss_dssp BBSSSBSBSSCEEECBSSSCCCHHHHHHH-HHHHTT---------------TCCEEECCBSGGGTTTSCCSSS-----SH
T ss_pred HHHHHccCCEEEEEEECCCCccHHHHHHH-HHHHHc---------------CCcEEEEEecccccccchHHHH-----HH
Confidence 99999999999999999998776665444 333332 6899999999999764322222 11
Q ss_pred HHHHHHHcCC--CCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGL--LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 180 ~~~~~~~~~~--~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
. ..+++ ..+...+++++ +||++|.|++++++.+...+
T Consensus 128 l----~~~~~~~e~~~~~~~iv~---------vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 128 L----LAYDVVCEDYGGDVQAVH---------VSALTGENMMALAEATIALA 166 (537)
T ss_dssp H----HHTTSCCCCSSSSEEECC---------CCSSSSCSSHHHHHHHHHHH
T ss_pred H----HhhhhhHHhcCCCceEEE---------EECCCCCCchhHHHHHHHhh
Confidence 1 22222 22222367788 99999999999998887654
No 146
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.78 E-value=5.6e-18 Score=151.38 Aligned_cols=145 Identities=15% Similarity=0.173 Sum_probs=88.3
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCc--ccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC-
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ--TIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG- 92 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G- 92 (333)
.+....+||+|+|.+|||||||+|+|++..+.....+ +++.+.....+.++ ...+.||||||
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~i~liDTpG~ 88 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK---------------ETELVVVDTPGI 88 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET---------------TEEEEEEECCSC
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC---------------CceEEEEECCCc
Confidence 3455679999999999999999999999877655544 33444444455443 35689999999
Q ss_pred ----------chhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 93 ----------HERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 93 ----------~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
.+.+......++..+|++|+|+|+++....+ ..|+..+...... ....|++||+||+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~~~~----------~~~~~~iiv~nK~D 156 (239)
T 3lxx_A 89 FDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEE--HKATEKILKMFGE----------RARSFMILIFTRKD 156 (239)
T ss_dssp C-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHHHHH----------HHGGGEEEEEECGG
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHHhhh----------hccceEEEEEeCCc
Confidence 3345555556677899999999998755422 2333333221100 01469999999999
Q ss_pred CCCccCCccCcc--cHHHHHHHHHHHcCC
Q 019959 163 VAAKEGTRGSSG--NLVDAARQWVEKQGL 189 (333)
Q Consensus 163 l~~~~~r~v~~~--~~~~~~~~~~~~~~~ 189 (333)
+.... .+... ...+.++.++++.+.
T Consensus 157 ~~~~~--~~~~~i~~~~~~l~~l~~~~~~ 183 (239)
T 3lxx_A 157 DLGDT--NLHDYLREAPEDIQDLMDIFGD 183 (239)
T ss_dssp GC--------------CHHHHHHHHHHSS
T ss_pred cCCcc--cHHHHHHhchHHHHHHHHHcCC
Confidence 87542 22100 001357778888775
No 147
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.78 E-value=4.8e-19 Score=167.51 Aligned_cols=129 Identities=14% Similarity=0.176 Sum_probs=99.3
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCC----------cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQ----------RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLP 151 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~----------~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 151 (333)
.+.+.||||+|+++++.++..+|++++++|+|||+++ ..++.+...|+..+..... ..+
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~-----------~~~ 260 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW-----------FTD 260 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG-----------GTT
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc-----------ccC
Confidence 5789999999999999999999999999999999999 5678988899999877532 137
Q ss_pred CcEEEEeeCcCCCCccCC-------------ccCcccHHHHHHHHHHHc--CCCCC--CcCCCccccCCCCCceeeeecc
Q 019959 152 VPYVVIGNKADVAAKEGT-------------RGSSGNLVDAARQWVEKQ--GLLPS--SEELPLTESFPGGGGLIAAAKE 214 (333)
Q Consensus 152 ~PiivVgNK~Dl~~~~~r-------------~v~~~~~~~~~~~~~~~~--~~~~~--~~~~p~~E~~~~~~~~~~SAk~ 214 (333)
+|+||||||+||..+... .++ .+++..++... .+... ...+.++| |||++
T Consensus 261 ~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~----~~e~~~~~~~~f~~l~~~~~~~~~~~~e---------tSA~~ 327 (353)
T 1cip_A 261 TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNT----YEEAAAYIQCQFEDLNKRKDTKEIYTHF---------TCATD 327 (353)
T ss_dssp SEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSC----HHHHHHHHHHHHHTTCSCTTTCCEEEEE---------CCTTC
T ss_pred CcEEEEEECcCchhhhccccchhhcccccCCCCC----HHHHHHHHHHHHHHhhcccCCCceEEEE---------EECcC
Confidence 999999999999633100 133 47788887642 11100 11356777 99999
Q ss_pred CcCHHHHHHHHHHHHHHHHh
Q 019959 215 ARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 215 g~~v~~~~~~l~~~l~~~~~ 234 (333)
+.||+++|+.+.+.+++..+
T Consensus 328 ~~nV~~vF~~v~~~i~~~~l 347 (353)
T 1cip_A 328 TKNVQFVFDAVTDVIIKNNL 347 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 99999999999998877644
No 148
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.78 E-value=2.3e-18 Score=172.95 Aligned_cols=162 Identities=16% Similarity=0.208 Sum_probs=111.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCC--CCC-----C------CCcccceeEEEEEE--EeCCCCCCCCccCCCCCceEEE
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGS--SFS-----R------PSQTIGCTVGVKHI--TYGSSGSSSNSIKGDSERDFFV 85 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~--~~~-----~------~~~t~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~l 85 (333)
..+|+|+|..++|||||+++|+... +.. . ...+.|.++....+ .+.. .++..+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~----------~~g~~~~l 73 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKA----------SDGETYQL 73 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEEC----------TTSCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEec----------CCCCeEEE
Confidence 4689999999999999999998531 110 0 01122334433322 2220 13567899
Q ss_pred EEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC
Q 019959 86 ELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 165 (333)
Q Consensus 86 ~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~ 165 (333)
+||||||+++|......+++.+|++|+|+|+++..+++....|...+.. ++|+|+|+||+|+..
T Consensus 74 ~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~----------------~ipiIvViNKiDl~~ 137 (599)
T 3cb4_D 74 NFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM----------------DLEVVPVLNKIDLPA 137 (599)
T ss_dssp EEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT----------------TCEEEEEEECTTSTT
T ss_pred EEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC----------------CCCEEEeeeccCccc
Confidence 9999999999999999999999999999999999888888888766532 589999999999986
Q ss_pred ccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 166 KEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 166 ~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+. .+...++.+.+++.. .++++ +||++|.|++++++.+.+.+
T Consensus 138 a~~--------~~v~~ei~~~lg~~~----~~vi~---------vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 138 ADP--------ERVAEEIEDIVGIDA----TDAVR---------CSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp CCH--------HHHHHHHHHHTCCCC----TTCEE---------ECTTTCTTHHHHHHHHHHHS
T ss_pred ccH--------HHHHHHHHHHhCCCc----ceEEE---------eecccCCCchhHHHHHhhcC
Confidence 421 244567777777531 24666 99999999998888877643
No 149
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.78 E-value=3.2e-18 Score=171.80 Aligned_cols=163 Identities=18% Similarity=0.208 Sum_probs=113.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC--CCCCC-----C------CcccceeEEE--EEEEeCCCCCCCCccCCCCCceEE
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG--SSFSR-----P------SQTIGCTVGV--KHITYGSSGSSSNSIKGDSERDFF 84 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~--~~~~~-----~------~~t~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~ 84 (333)
...+|+|+|..++|||||+++|+.. .+... . ....|.++.. ..+.+.. .++..+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~----------~dg~~~~ 74 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKA----------KDGNTYK 74 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEEC----------TTSCEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEc----------CCCCeEE
Confidence 4569999999999999999999852 11110 0 0011222211 1222210 1356789
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
++||||||+++|......+++.+|++|+|+|+++..+++....|..... . ++|+|+|+||+|+.
T Consensus 75 inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-~---------------~ipiIvviNKiDl~ 138 (600)
T 2ywe_A 75 LHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-Q---------------DLVIIPVINKIDLP 138 (600)
T ss_dssp EEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-T---------------TCEEEEEEECTTST
T ss_pred EEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-C---------------CCCEEEEEeccCcc
Confidence 9999999999999988888999999999999999999988888876553 2 58999999999997
Q ss_pred CccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 165 AKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 165 ~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
..+. .+...++.+.+++.. .++++ +||++|.|++++++.+.+.+
T Consensus 139 ~a~~--------~~v~~el~~~lg~~~----~~vi~---------vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 139 SADV--------DRVKKQIEEVLGLDP----EEAIL---------ASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp TCCH--------HHHHHHHHHTSCCCG----GGCEE---------CBTTTTBSHHHHHHHHHHHS
T ss_pred ccCH--------HHHHHHHHHhhCCCc----ccEEE---------EEeecCCCchHHHHHHHHhc
Confidence 6421 244556666666531 23666 99999999999888877644
No 150
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.77 E-value=2.5e-18 Score=167.39 Aligned_cols=164 Identities=18% Similarity=0.128 Sum_probs=105.7
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
..+||+|+|++|||||||+|+|++.... ....++.+.+.....+.++ + ..+.+|||+|..++..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~-------------g--~~~~l~Dt~G~~~~~~ 243 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFID-------------G--RKYVFVDTAGLRRKSR 243 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEET-------------T--EEEEESSCSCC-----
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEEC-------------C--EEEEEEECCCCccccc
Confidence 4589999999999999999999987542 2233333444445555554 2 3578999999754332
Q ss_pred hH------------HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 99 CR------------SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 99 ~~------------~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
.. ..+++.+|++++|+|+++..+++.. .+...+... +.|+++|+||+|+.+.
T Consensus 244 ~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~~---------------~~~~ilv~NK~Dl~~~ 307 (439)
T 1mky_A 244 VEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMERR---------------GRASVVVFNKWDLVVH 307 (439)
T ss_dssp ------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT---------------TCEEEEEEECGGGSTT
T ss_pred cchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHHc---------------CCCEEEEEECccCCCc
Confidence 21 2356789999999999998777653 233333333 5899999999999864
Q ss_pred cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+.+.. .+..+.+.+.+.... .+|+++ +||++|.|++++++.+.+.+..
T Consensus 308 --~~~~~---~~~~~~~~~~~~~~~---~~~~~~---------~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 308 --REKRY---DEFTKLFREKLYFID---YSPLIF---------TSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp --GGGCH---HHHHHHHHHHCGGGT---TSCEEE---------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred --hhhHH---HHHHHHHHHHhccCC---CCcEEE---------EECCCCCCHHHHHHHHHHHHHh
Confidence 22221 122223334443211 256777 9999999999999999876543
No 151
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.76 E-value=1.8e-18 Score=161.58 Aligned_cols=129 Identities=15% Similarity=0.172 Sum_probs=97.0
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECC----------CcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLS----------QRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLP 151 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s----------~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 151 (333)
.+.++||||+|+++++.++..||++++++|+|||++ +..++.+...|+..+..... ..+
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~-----------~~~ 234 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW-----------FQN 234 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG-----------GTT
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc-----------cCC
Confidence 578999999999999999999999999999999665 66778888888888876532 237
Q ss_pred CcEEEEeeCcCCCCcc--------------CCccCcccHHHHHHHHHHHc--CCCC-CCcCCCccccCCCCCceeeeecc
Q 019959 152 VPYVVIGNKADVAAKE--------------GTRGSSGNLVDAARQWVEKQ--GLLP-SSEELPLTESFPGGGGLIAAAKE 214 (333)
Q Consensus 152 ~PiivVgNK~Dl~~~~--------------~r~v~~~~~~~~~~~~~~~~--~~~~-~~~~~p~~E~~~~~~~~~~SAk~ 214 (333)
+|++|+|||+||..+. +..++ .+++.++.... .+.. -...+.+++ |||++
T Consensus 235 ~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~----~e~a~~fi~~~F~~~~~~~~~~i~~~~---------TsA~d 301 (327)
T 3ohm_A 235 SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRD----AQAAREFILKMFVDLNPDSDKIIYSHF---------TCATD 301 (327)
T ss_dssp CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSC----HHHHHHHHHHHHHSSCTTTTSCEEEEE---------CCTTC
T ss_pred ceEEEEEECchhhhhhhccchHhhhchhccCCCCC----HHHHHHHHHHHHHhhcccccCCcEEEE---------EEeec
Confidence 9999999999987532 11233 47777775431 1100 001244566 99999
Q ss_pred CcCHHHHHHHHHHHHHHHHh
Q 019959 215 ARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 215 g~~v~~~~~~l~~~l~~~~~ 234 (333)
+.||+.+|..+.+.++++.+
T Consensus 302 ~~nV~~vF~~v~~~Il~~~l 321 (327)
T 3ohm_A 302 TENIRFVFAAVKDTILQLNL 321 (327)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999887654
No 152
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.76 E-value=1.6e-18 Score=167.09 Aligned_cols=157 Identities=20% Similarity=0.207 Sum_probs=108.6
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC--------CCCCC-------CCcccceeEEEEEEEeCCCCCCCCccCCCCCceE
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG--------SSFSR-------PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDF 83 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~--------~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 83 (333)
...++|+++|..++|||||+++|++. .+... ...+.|.++....+.+. ....
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-------------~~~~ 75 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE-------------TAKR 75 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE-------------CSSC
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEec-------------cCCe
Confidence 34689999999999999999999963 22110 00123344433444443 2346
Q ss_pred EEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcC
Q 019959 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKAD 162 (333)
Q Consensus 84 ~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~D 162 (333)
.+.||||||+++|......++..+|++|+|+|+++....+ ...|+..+... ++| +++|+||+|
T Consensus 76 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~~---------------~ip~iivviNK~D 139 (405)
T 2c78_A 76 HYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV---------------GVPYIVVFMNKVD 139 (405)
T ss_dssp EEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHHT---------------TCCCEEEEEECGG
T ss_pred EEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHHc---------------CCCEEEEEEECcc
Confidence 7999999999999988888899999999999999876544 34566655554 578 899999999
Q ss_pred CCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCH
Q 019959 163 VAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYD 218 (333)
Q Consensus 163 l~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v 218 (333)
+.... .. ...+.++++++++.+++.. .++|+++ +||++|.|+
T Consensus 140 l~~~~--~~-~~~~~~~~~~~l~~~~~~~--~~~~~i~---------~SA~~g~~v 181 (405)
T 2c78_A 140 MVDDP--EL-LDLVEMEVRDLLNQYEFPG--DEVPVIR---------GSALLALEQ 181 (405)
T ss_dssp GCCCH--HH-HHHHHHHHHHHHHHTTSCT--TTSCEEE---------CCHHHHHHH
T ss_pred ccCcH--HH-HHHHHHHHHHHHHHhcccc--cCCCEEE---------ccHHHhhhh
Confidence 97521 10 0112345677777777421 1367887 999999773
No 153
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.76 E-value=3e-18 Score=164.83 Aligned_cols=155 Identities=22% Similarity=0.188 Sum_probs=105.8
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC-------CCCCC-------CCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEE
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG-------SSFSR-------PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFV 85 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~-------~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 85 (333)
..++|+++|..++|||||+++|++. .+... .....|.++....+.+. .....+
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-------------~~~~~~ 68 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS-------------TAARHY 68 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE-------------CSSCEE
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEec-------------cCCeEE
Confidence 3589999999999999999999863 11110 00122333333333343 234679
Q ss_pred EEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcCCC
Q 019959 86 ELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVA 164 (333)
Q Consensus 86 ~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~Dl~ 164 (333)
.||||||+++|......++..+|++|+|+|+++....+....| ..+... ++| +++|+||+|+.
T Consensus 69 ~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~---------------~vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 69 AHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI---------------GVEHVVVYVNKADAV 132 (397)
T ss_dssp EEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT---------------TCCCEEEEEECGGGC
T ss_pred EEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc---------------CCCeEEEEEECcccC
Confidence 9999999999988888889999999999999997665554444 444433 578 78999999997
Q ss_pred CccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcC
Q 019959 165 AKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY 217 (333)
Q Consensus 165 ~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~ 217 (333)
... .. ...+.++++++++.+++.. +.+|+++ +||++|.|
T Consensus 133 ~~~--~~-~~~~~~~~~~~l~~~~~~~--~~~~~i~---------~SA~~g~n 171 (397)
T 1d2e_A 133 QDS--EM-VELVELEIRELLTEFGYKG--EETPIIV---------GSALCALE 171 (397)
T ss_dssp SCH--HH-HHHHHHHHHHHHHHTTSCT--TTSCEEE---------CCHHHHHT
T ss_pred CCH--HH-HHHHHHHHHHHHHHcCCCc--ccCcEEE---------eehhhccc
Confidence 521 10 0112356777888777521 1367888 99999865
No 154
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.76 E-value=8e-19 Score=170.77 Aligned_cols=169 Identities=13% Similarity=0.179 Sum_probs=108.9
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC--CCCCCC-----------------------------CcccceeEEEEEEEeCCC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG--SSFSRP-----------------------------SQTIGCTVGVKHITYGSS 68 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~--~~~~~~-----------------------------~~t~~~~~~~~~~~~~~~ 68 (333)
..++|+++|..++|||||+++|++. .+.... ...++.+.....+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~---- 80 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE---- 80 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE----
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe----
Confidence 4689999999999999999999864 332110 11222222222332
Q ss_pred CCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 019959 69 GSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPG 148 (333)
Q Consensus 69 ~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~ 148 (333)
...+.+.||||||+++|......++..+|++|+|||+++ .+|+.+..|..+..++.....
T Consensus 81 -----------~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~-------- 140 (435)
T 1jny_A 81 -----------TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAK-------- 140 (435)
T ss_dssp -----------CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHH--------
T ss_pred -----------cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHH--------
Confidence 235679999999999999988889999999999999999 778765444333222110000
Q ss_pred CCCC-cEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHH
Q 019959 149 GLPV-PYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVM 223 (333)
Q Consensus 149 ~~~~-PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~ 223 (333)
..++ |+|||+||+|+.+....+....++.++++++++.+++.. .++++++ +||++|.|+.+.++
T Consensus 141 ~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~i~---------iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 141 TMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNT--NKVRFVP---------VVAPSGDNITHKSE 205 (435)
T ss_dssp HTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCC--TTCEEEE---------CBTTTTBTTTBCCS
T ss_pred HcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCc--CCceEEE---------eecccCcccccccc
Confidence 0133 689999999998631111111223467788888877532 1257888 99999999876544
No 155
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.76 E-value=4.1e-18 Score=164.51 Aligned_cols=176 Identities=18% Similarity=0.157 Sum_probs=109.7
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcC---CCCCCCCc--ccceeEEEEEEEeCCCCC--CCCccCCCCC----ceEEEE
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKG---SSFSRPSQ--TIGCTVGVKHITYGSSGS--SSNSIKGDSE----RDFFVE 86 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~---~~~~~~~~--t~~~~~~~~~~~~~~~~~--~~~~i~~~~~----~~~~l~ 86 (333)
....++|+++|..++|||||+++|++. .+..+..+ |+...+....+....... ....+....+ ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 355689999999999999999999954 23333333 554444443332110000 0000000001 137899
Q ss_pred EEeCCCchhhhhhHHhhccCCcEEEEEEECCCcc----cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 87 LWDISGHERYKDCRSILYSQINGVIFVHDLSQRR----TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 87 i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~----S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
||||||+++|.......+..+|++|+|+|+++.. +++++..| .... ..|+++|+||+|
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~~--------------~~~iivviNK~D 148 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QIIG--------------QKNIIIAQNKIE 148 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHHT--------------CCCEEEEEECGG
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHcC--------------CCcEEEEEECcc
Confidence 9999999999888777788999999999999643 44444332 2232 257999999999
Q ss_pred CCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 163 VAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 163 l~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+...+... +..++++++++... ...+|+++ +||++|.|++++++.|.+.
T Consensus 149 l~~~~~~~----~~~~~i~~~l~~~~----~~~~~~i~---------vSA~~g~gi~~L~~~l~~~ 197 (410)
T 1kk1_A 149 LVDKEKAL----ENYRQIKEFIEGTV----AENAPIIP---------ISALHGANIDVLVKAIEDF 197 (410)
T ss_dssp GSCHHHHH----HHHHHHHHHHTTST----TTTCCEEE---------CBTTTTBSHHHHHHHHHHH
T ss_pred CCCHHHHH----HHHHHHHHHHHhcC----cCCCeEEE---------eeCCCCCCHHHHHHHHHHh
Confidence 98642100 11234444443321 12367777 9999999998888877653
No 156
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.76 E-value=2.8e-18 Score=160.93 Aligned_cols=135 Identities=17% Similarity=0.181 Sum_probs=98.9
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECC----------CcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLS----------QRRTKTSLQKWAVEIATSGTFSAPLASGGPGGL 150 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s----------~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 150 (333)
..+.++||||+|+++++.++..||++++++|+|||++ +..++.+...|+..+..... ..
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~-----------~~ 227 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF-----------LK 227 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG-----------GT
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc-----------cC
Confidence 3578999999999999999999999999999999999 78889998889988876532 23
Q ss_pred CCcEEEEeeCcCCCCccCCccC---------cccHHHHHHHHHHHcC--------CCCCC------------cCCCcccc
Q 019959 151 PVPYVVIGNKADVAAKEGTRGS---------SGNLVDAARQWVEKQG--------LLPSS------------EELPLTES 201 (333)
Q Consensus 151 ~~PiivVgNK~Dl~~~~~r~v~---------~~~~~~~~~~~~~~~~--------~~~~~------------~~~p~~E~ 201 (333)
++|++|+|||+||..+....+. .....+++.+|+.... +..-. ..+.+++
T Consensus 228 ~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~- 306 (340)
T 4fid_A 228 GAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP- 306 (340)
T ss_dssp TSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE-
T ss_pred CCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE-
Confidence 7999999999998643100000 0001466666654422 00000 1244566
Q ss_pred CCCCCceeeeeccCcCHHHHHHHHHHHHHHHHhcc
Q 019959 202 FPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFS 236 (333)
Q Consensus 202 ~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~~~ 236 (333)
|||++..||+.+|+.+.+.+++ .+..
T Consensus 307 --------TsA~dt~nv~~vF~~v~~~Il~-~l~~ 332 (340)
T 4fid_A 307 --------TNATDGSNIKRVFMLAVDVIMK-NMAA 332 (340)
T ss_dssp --------ECTTCHHHHHHHHHHHHHHHHH-HHHH
T ss_pred --------EEeeCcHHHHHHHHHHHHHHHH-HHHH
Confidence 9999999999999999999998 5543
No 157
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.76 E-value=1.9e-18 Score=157.97 Aligned_cols=159 Identities=15% Similarity=0.200 Sum_probs=89.4
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-CCCC-------CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSS-FSRP-------SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDIS 91 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~-------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~ 91 (333)
..++|+|+|.+|||||||+|+|++... ...+ .+|++.+.....+..+ +..+.+.|||||
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~liDTp 73 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEG-------------GVQLLLTIVDTP 73 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---------------CCEEEEEEECC
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecC-------------CeEEEEEEEECC
Confidence 468999999999999999999886543 3333 5666766655555433 566789999999
Q ss_pred Cch-------hhhhhH-------Hhhcc-------------CCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCC
Q 019959 92 GHE-------RYKDCR-------SILYS-------------QINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLAS 144 (333)
Q Consensus 92 G~e-------~~~~~~-------~~~~~-------------~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~ 144 (333)
|.. .+..+. ..++. ++|+++++++.+.......-..++..+..
T Consensus 74 G~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---------- 143 (274)
T 3t5d_A 74 GFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---------- 143 (274)
T ss_dssp CCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----------
T ss_pred CccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----------
Confidence 962 233332 22333 37899999987763322222345555422
Q ss_pred CCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHH
Q 019959 145 GGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMK 224 (333)
Q Consensus 145 ~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~ 224 (333)
++|+|+|+||+|+....... ...+.+.+.....+ +++++ +||+++.|++++++.
T Consensus 144 ------~~pvi~V~nK~D~~~~~e~~----~~~~~i~~~l~~~~-------i~v~~---------~sa~~~~~~~~l~~~ 197 (274)
T 3t5d_A 144 ------KVNIIPLIAKADTLTPEECQ----QFKKQIMKEIQEHK-------IKIYE---------FPETDDEEENKLVKK 197 (274)
T ss_dssp ------TSCEEEEESSGGGSCHHHHH----HHHHHHHHHHHHTT-------CCCCC---------C-----------CHH
T ss_pred ------cCCEEEEEeccCCCCHHHHH----HHHHHHHHHHHHcC-------CeEEc---------CCCCCChhHHHHHHH
Confidence 48999999999987542110 01123334444445 45777 999999888777766
Q ss_pred HHH
Q 019959 225 FFR 227 (333)
Q Consensus 225 l~~ 227 (333)
+.+
T Consensus 198 l~~ 200 (274)
T 3t5d_A 198 IKD 200 (274)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 158
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.75 E-value=2.7e-18 Score=166.93 Aligned_cols=163 Identities=16% Similarity=0.133 Sum_probs=106.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCC--CCCC----------CCccc---------------------ceeEEEEEEE
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGS--SFSR----------PSQTI---------------------GCTVGVKHIT 64 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~--~~~~----------~~~t~---------------------~~~~~~~~~~ 64 (333)
....++|+++|..++|||||+++|++.. +... ...|. ..+.....+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 3456899999999999999999998653 1110 01111 1111111222
Q ss_pred eCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCC
Q 019959 65 YGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLAS 144 (333)
Q Consensus 65 ~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~ 144 (333)
.....+.||||||+++|......++..+|++|+|+|+++....+ ...|+..+....
T Consensus 101 ---------------~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~~-------- 156 (434)
T 1zun_B 101 ---------------TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLLG-------- 156 (434)
T ss_dssp ---------------CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHTT--------
T ss_pred ---------------cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHcC--------
Confidence 23567999999999999888888899999999999999876433 334554444431
Q ss_pred CCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHH
Q 019959 145 GGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVM 223 (333)
Q Consensus 145 ~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~ 223 (333)
..|+|+|+||+|+.+.+...+ .++.++.+++++.++.. ...+++++ +||++|.|++++++
T Consensus 157 ------~~~iIvviNK~Dl~~~~~~~~--~~i~~~~~~~~~~~g~~--~~~~~~i~---------vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 157 ------IKHIVVAINKMDLNGFDERVF--ESIKADYLKFAEGIAFK--PTTMAFVP---------MSALKGDNVVNKSE 216 (434)
T ss_dssp ------CCEEEEEEECTTTTTSCHHHH--HHHHHHHHHHHHTTTCC--CSEEEEEE---------CCTTTCTTTSSCCT
T ss_pred ------CCeEEEEEEcCcCCcccHHHH--HHHHHHHHHHHHHhCCC--ccCceEEE---------EeccCCCCcccccc
Confidence 236999999999976311110 11235566677666621 11356777 99999999987543
No 159
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.75 E-value=3.8e-18 Score=153.69 Aligned_cols=173 Identities=16% Similarity=0.117 Sum_probs=97.1
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeE--EEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc--
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTV--GVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH-- 93 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~-- 93 (333)
....++|+|||.+|||||||+|+|++..+......+.+.+. ....+.. ....+.||||||.
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~---------------~~~~i~liDTPG~~~ 82 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW---------------DKCHVEVVDTPDIFS 82 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE---------------TTEEEEEEECCSCSS
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE---------------CCcEEEEEECCCCCC
Confidence 35679999999999999999999998876543332222222 2223333 2467999999995
Q ss_pred ------hhhhhhHHhh----ccCCcEEEEEEECCCcccHH-HHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 94 ------ERYKDCRSIL----YSQINGVIFVHDLSQRRTKT-SLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 94 ------e~~~~~~~~~----~~~ad~vIlV~D~s~~~S~~-~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
+++......+ +..+|++|+|+|+++....+ .+..|+.++.... ..+.|+|||+||+|
T Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~------------~~~~~iilv~nK~D 150 (247)
T 3lxw_A 83 SQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGED------------VLKWMVIVFTRKED 150 (247)
T ss_dssp TTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGG------------GGGGEEEEEECGGG
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChh------------hhccEEEEEEchHh
Confidence 3333322222 38999999999998632221 1233444332111 12579999999999
Q ss_pred CCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeee---ccCcCHHHHHHHHHHHHHH
Q 019959 163 VAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAA---KEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 163 l~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SA---k~g~~v~~~~~~l~~~l~~ 231 (333)
+............-.+..+.+.+..|.. +.+|. .++ .++.|++++++.+.+.+..
T Consensus 151 l~~~~~~~~l~~~~~~~l~~l~~~~g~~-----~~~~~---------~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 151 LAGGSLHDYVSNTENRALRELVAECGGR-----VCAFD---------NRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp GTTCCHHHHHHHCCCHHHHHHHHHTTTC-----EEECC---------TTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHhhcccHHHHHHHHHcCCe-----EEEEe---------CCCCccccHHHHHHHHHHHHHHHHH
Confidence 9753210000000003356777777743 11222 333 3366777777776655543
No 160
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.74 E-value=6.7e-19 Score=167.28 Aligned_cols=164 Identities=19% Similarity=0.188 Sum_probs=88.6
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCC-CCCCC--------CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGS-SFSRP--------SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDI 90 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~-~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt 90 (333)
..++|+|||++|||||||+++|++.. +...+ .+|++.++....+.. ++..+.+.+|||
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~-------------~~~~~~l~i~DT 102 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEE-------------RGVKLRLTVVDT 102 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC-----------------CEEEEEEEEC-
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeec-------------CCcccceEEEEe
Confidence 45899999999999999999987543 32222 134444433222222 245678999999
Q ss_pred CCc-------hhhhhhHH-------hhccCCcEE-----------EEEEECCC-cccHHHHH-HHHHHHHhcCCCCCCCC
Q 019959 91 SGH-------ERYKDCRS-------ILYSQINGV-----------IFVHDLSQ-RRTKTSLQ-KWAVEIATSGTFSAPLA 143 (333)
Q Consensus 91 ~G~-------e~~~~~~~-------~~~~~ad~v-----------IlV~D~s~-~~S~~~l~-~~~~~i~~~~~~~~~~~ 143 (333)
+|+ +.+..+.. .|++.++++ ++||++++ ..++..+. .|+..+ .
T Consensus 103 pG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~------- 172 (361)
T 2qag_A 103 PGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---H------- 172 (361)
T ss_dssp -------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---C-------
T ss_pred ccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---c-------
Confidence 998 66666655 555544433 36666665 45666654 455443 1
Q ss_pred CCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHH
Q 019959 144 SGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVM 223 (333)
Q Consensus 144 ~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~ 223 (333)
.++|+|+|+||+|+... +.+.. ..+.+.++++.++ ++|++ +||++|.| ++.|.
T Consensus 173 ------~~~piIlV~NK~Dl~~~--~ev~~--~k~~i~~~~~~~~-------i~~~~---------~Sa~~~~~-~e~~~ 225 (361)
T 2qag_A 173 ------NKVNIVPVIAKADTLTL--KERER--LKKRILDEIEEHN-------IKIYH---------LPDAESDE-DEDFK 225 (361)
T ss_dssp ------S-SCEEEEEECCSSSCH--HHHHH--HHHHHHHHTTCC--------CCSCC---------CC----------CH
T ss_pred ------cCCCEEEEEECCCCCCH--HHHHH--HHHHHHHHHHHCC-------CCEEe---------CCCcCCCc-chhHH
Confidence 26899999999999865 22210 1134444544444 57888 99999998 88888
Q ss_pred HHHHHHHHHH
Q 019959 224 KFFRMLIRRR 233 (333)
Q Consensus 224 ~l~~~l~~~~ 233 (333)
.+++.+....
T Consensus 226 ~l~~~i~~~i 235 (361)
T 2qag_A 226 EQTRLLKASI 235 (361)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhcC
Confidence 8888876643
No 161
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.74 E-value=4.5e-18 Score=156.51 Aligned_cols=172 Identities=16% Similarity=0.175 Sum_probs=103.4
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCC------CCcccceeEEEEEEE--------eCCCC---CCCC------
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSR------PSQTIGCTVGVKHIT--------YGSSG---SSSN------ 73 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~------~~~t~~~~~~~~~~~--------~~~~~---~~~~------ 73 (333)
+....++|+|+|.+|||||||+|+|++..+... ..++. .+... +...+ .+..
T Consensus 22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~-----~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~ 96 (299)
T 2aka_B 22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLV-----LQLVNSTTEYAEFLHCKGKKFTDFEEVRLEI 96 (299)
T ss_dssp TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEE-----EEEEECSSCEEEETTSTTCCBCCHHHHHHHH
T ss_pred CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceE-----EEEecCCcccchhhhcCCcccCCHHHHHHHH
Confidence 345567999999999999999999998877421 12220 00000 00000 0000
Q ss_pred -----ccCC----CC----------CceEEEEEEeCCCch-------------hhhhhHHhhccCCcEEE-EEEECCCcc
Q 019959 74 -----SIKG----DS----------ERDFFVELWDISGHE-------------RYKDCRSILYSQINGVI-FVHDLSQRR 120 (333)
Q Consensus 74 -----~i~~----~~----------~~~~~l~i~Dt~G~e-------------~~~~~~~~~~~~ad~vI-lV~D~s~~~ 120 (333)
.+.+ .. .....+.||||||.. .+..+...++..++++| +|+|+++..
T Consensus 97 ~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~ 176 (299)
T 2aka_B 97 EAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL 176 (299)
T ss_dssp HHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCG
T ss_pred HHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcch
Confidence 0000 00 012569999999953 45667777888888777 699998865
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHH-cCCCCCCcCCCcc
Q 019959 121 TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEK-QGLLPSSEELPLT 199 (333)
Q Consensus 121 S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ 199 (333)
+......|+..+... +.|+++|+||+|+.+.. ... .+ +.+. ..... ....+++
T Consensus 177 ~~~~~~~~~~~~~~~---------------~~~~i~V~NK~Dl~~~~--~~~----~~----~~~~~~~~~~-~~~~~v~ 230 (299)
T 2aka_B 177 ANSDALKIAKEVDPQ---------------GQRTIGVITKLDLMDEG--TDA----RD----VLENKLLPLR-RGYIGVV 230 (299)
T ss_dssp GGCHHHHHHHHHCTT---------------CSSEEEEEECGGGSCTT--CCC----HH----HHTTCSSCCT-TCEEECC
T ss_pred hhhHHHHHHHHhCCC---------------CCeEEEEEEccccCCCC--chH----HH----HHhCCcCcCC-CCcEEEE
Confidence 554444455555322 68999999999998652 111 12 1111 10000 0013566
Q ss_pred ccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 200 ESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 200 E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+ +||++|.|++++++.+.++
T Consensus 231 ~---------~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 231 N---------RSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp C---------CCCBCTTSCBCHHHHHHHH
T ss_pred C---------CChhhccccccHHHHHHHH
Confidence 6 9999999999999888763
No 162
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.74 E-value=5.6e-18 Score=147.50 Aligned_cols=161 Identities=19% Similarity=0.261 Sum_probs=101.5
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch--
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE-- 94 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e-- 94 (333)
+.....+|+|+|++|||||||+++|++..+.....++.|.+.....+.++ + .+.+|||+|..
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~-------------~---~~~l~Dt~G~~~~ 85 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA-------------D---GKRLVDLPGYGYA 85 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE-------------T---TEEEEECCCCC--
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec-------------C---CEEEEECcCCccc
Confidence 34556799999999999999999999877555555666665544444443 1 37899999973
Q ss_pred --------hhhhhHHhhc---cCCcEEEEEEECCCcccHHH--HHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 95 --------RYKDCRSILY---SQINGVIFVHDLSQRRTKTS--LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 95 --------~~~~~~~~~~---~~ad~vIlV~D~s~~~S~~~--l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+......++ ..++++++|+|+++..++.. +..|+. .. ++|+++|+||+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~~---------------~~~~~~v~nK~ 147 (210)
T 1pui_A 86 EVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---DS---------------NIAVLVLLTKA 147 (210)
T ss_dssp ----CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---HT---------------TCCEEEEEECG
T ss_pred ccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---Hc---------------CCCeEEEEecc
Confidence 2333333444 47899999999998776643 333432 22 58999999999
Q ss_pred CCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 162 DVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 162 Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
|+.....+... .+.++.++.+.+.. +++++ +||+++.|++++++.+.+.+
T Consensus 148 D~~s~~~~~~~----~~~~~~~~~~~~~~-----~~~~~---------~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 148 DKLASGARKAQ----LNMVREAVLAFNGD-----VQVET---------FSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp GGSCHHHHHHH----HHHHHHHHGGGCSC-----EEEEE---------CBTTTTBSHHHHHHHHHHHH
T ss_pred cCCCchhHHHH----HHHHHHHHHhcCCC-----CceEE---------EeecCCCCHHHHHHHHHHHH
Confidence 98754211111 24455555554421 34555 99999999999988876653
No 163
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.74 E-value=5.2e-18 Score=168.46 Aligned_cols=117 Identities=15% Similarity=0.261 Sum_probs=84.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-----------------CCCC---CcccceeEEEEEEEeCCCCCCCCccCCCCC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSS-----------------FSRP---SQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~-----------------~~~~---~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (333)
..+|+|+|.+|||||||+++|+.... ...+ ....|.++......+. .
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-------------~ 79 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFP-------------Y 79 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEE-------------E
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEE-------------e
Confidence 45999999999999999999972110 0000 0001222222222222 2
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
..+.++||||||+++|......+++.+|++|+|+|+++..+......|. .+... ++|+++|+||
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~~---------------~iPiivviNK 143 (528)
T 3tr5_A 80 KDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRLR---------------HTPIMTFINK 143 (528)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHTT---------------TCCEEEEEEC
T ss_pred CCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHHc---------------CCCEEEEEeC
Confidence 3578999999999999999999999999999999999988888776664 33333 6899999999
Q ss_pred cCCCCc
Q 019959 161 ADVAAK 166 (333)
Q Consensus 161 ~Dl~~~ 166 (333)
+|+...
T Consensus 144 ~Dl~~~ 149 (528)
T 3tr5_A 144 MDRDTR 149 (528)
T ss_dssp TTSCCS
T ss_pred CCCccc
Confidence 999654
No 164
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.74 E-value=1.3e-18 Score=170.13 Aligned_cols=155 Identities=17% Similarity=0.121 Sum_probs=97.9
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC------
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG------ 92 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G------ 92 (333)
....+|+|||.+|||||||+|+|++..+. ....+.|.+.......+. .....+.||||+|
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~-------------~~~~~~~liDT~G~~~~~~ 86 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAE-------------WLNYDFNLIDTGGIDIGDE 86 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECT-------------TCSSCCEEECCCC------
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEE-------------ECCceEEEEECCCCCCcch
Confidence 33469999999999999999999987653 222344555544444443 2345699999999
Q ss_pred --chhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 93 --HERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 93 --~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
++++......++..+|++|+|+|.++..+.. ..|+.++... .+.|++||+||+|+....
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~--d~~l~~~l~~--------------~~~pvilV~NK~D~~~~~--- 147 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA--DEEVAKILYR--------------TKKPVVLAVNKLDNTEMR--- 147 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH--HHHHHHHHTT--------------CCSCEEEEEECC---------
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH--HHHHHHHHHH--------------cCCCEEEEEECccchhhh---
Confidence 7788888888999999999999988754433 3444444433 268999999999987431
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+...++ ..+++. ..++ +||++|.|++++++.+.+.+
T Consensus 148 -------~~~~e~-~~lg~~------~~~~---------iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 148 -------ANIYDF-YSLGFG------EPYP---------ISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp ----------CCS-GGGSSS------SEEE---------CCTTTCTTHHHHHHHHHTTG
T ss_pred -------hhHHHH-HHcCCC------ceEE---------eecccccchHHHHHHHHhhc
Confidence 111111 122321 2345 99999999999888886543
No 165
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.74 E-value=6.5e-18 Score=156.60 Aligned_cols=156 Identities=15% Similarity=0.104 Sum_probs=100.7
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch-hh-
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE-RY- 96 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e-~~- 96 (333)
+..+|+|+|.+|||||||+|+|++..+. ....+....+.....+.. ....+.+|||||+. ..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~---------------~~~~i~~iDTpG~~~~~~ 71 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE---------------GAYQAIYVDTPGLHMEEK 71 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE---------------TTEEEEEESSSSCCHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEE---------------CCeeEEEEECcCCCccch
Confidence 3458999999999999999999987652 111111111111112222 34679999999987 32
Q ss_pred -------hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC
Q 019959 97 -------KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT 169 (333)
Q Consensus 97 -------~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r 169 (333)
......++..+|++++|+|+++ -+ ....|+.+.... .+.|+++|+||+|+... +
T Consensus 72 ~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~--------------~~~P~ilvlNK~D~~~~--~ 132 (301)
T 1ega_A 72 RAINRLMNKAASSSIGDVELVIFVVEGTR-WT--PDDEMVLNKLRE--------------GKAPVILAVNKVDNVQE--K 132 (301)
T ss_dssp HHHHHHHTCCTTSCCCCEEEEEEEEETTC-CC--HHHHHHHHHHHS--------------SSSCEEEEEESTTTCCC--H
T ss_pred hhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CC--HHHHHHHHHHHh--------------cCCCEEEEEECcccCcc--H
Confidence 2223456789999999999987 33 333455443332 26899999999999862 1
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
. .+.+.+.++++.+++ .++++ +||++|.|++++++.+.+.
T Consensus 133 ~----~~~~~l~~l~~~~~~------~~~i~---------iSA~~g~~v~~l~~~i~~~ 172 (301)
T 1ega_A 133 A----DLLPHLQFLASQMNF------LDIVP---------ISAETGLNVDTIAAIVRKH 172 (301)
T ss_dssp H----HHHHHHHHHHTTSCC------SEEEE---------CCTTTTTTHHHHHHHHHTT
T ss_pred H----HHHHHHHHHHHhcCc------CceEE---------EECCCCCCHHHHHHHHHHh
Confidence 1 112445555554553 13555 9999998888888777653
No 166
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.73 E-value=7.4e-18 Score=170.18 Aligned_cols=161 Identities=12% Similarity=0.143 Sum_probs=106.6
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCC-------------------------------CcccceeEEEEEEEeCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRP-------------------------------SQTIGCTVGVKHITYGS 67 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~-------------------------------~~t~~~~~~~~~~~~~~ 67 (333)
...++|+|+|.+|||||||+++|++....... .+.++.+.....+..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-- 242 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-- 242 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC--
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec--
Confidence 45789999999999999999999966332111 012222233333332
Q ss_pred CCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcc---cH---HHHHHHHHHHHhcCCCCCC
Q 019959 68 SGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR---TK---TSLQKWAVEIATSGTFSAP 141 (333)
Q Consensus 68 ~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~---S~---~~l~~~~~~i~~~~~~~~~ 141 (333)
..+.+.||||||+++|......++..+|++|+|+|+++.. +| ......+..+...+
T Consensus 243 -------------~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lg----- 304 (611)
T 3izq_1 243 -------------HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG----- 304 (611)
T ss_dssp -------------SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTT-----
T ss_pred -------------CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcC-----
Confidence 3467999999999999999989999999999999999742 11 11111222222221
Q ss_pred CCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHH
Q 019959 142 LASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEA 221 (333)
Q Consensus 142 ~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~ 221 (333)
..|+|||+||+|+... +.....++.+++..+...+|+.. ..+++++ |||++|.|++++
T Consensus 305 ---------i~~iIVVvNKiDl~~~--~~~~~~ei~~~l~~~l~~~g~~~--~~~~~i~---------vSA~tG~gI~el 362 (611)
T 3izq_1 305 ---------IHNLIIAMNKMDNVDW--SQQRFEEIKSKLLPYLVDIGFFE--DNINWVP---------ISGFSGEGVYKI 362 (611)
T ss_dssp ---------CCEEEEEEECTTTTTT--CHHHHHHHHHHHHHHHHHHTCCG--GGCEEEE---------CCTTTCTTTSSC
T ss_pred ---------CCeEEEEEecccccch--hHHHHHHHHHHHHHHHHhhcccc--cCccEEe---------eecccCCCcccc
Confidence 2359999999999863 22222233455666777777532 1257777 999999999865
No 167
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.72 E-value=4.4e-18 Score=166.52 Aligned_cols=159 Identities=18% Similarity=0.218 Sum_probs=105.7
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC--CCCCC-----------------------C------CcccceeEEEEEEEeCCC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG--SSFSR-----------------------P------SQTIGCTVGVKHITYGSS 68 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~--~~~~~-----------------------~------~~t~~~~~~~~~~~~~~~ 68 (333)
..++|+++|..++|||||+++|++. .+... . ...++.+.....+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~---- 81 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE---- 81 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE----
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe----
Confidence 4689999999999999999999864 22110 0 01122222222332
Q ss_pred CCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcc---cHH---HHHHHHHHHHhcCCCCCCC
Q 019959 69 GSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR---TKT---SLQKWAVEIATSGTFSAPL 142 (333)
Q Consensus 69 ~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~---S~~---~l~~~~~~i~~~~~~~~~~ 142 (333)
.....+.||||||+++|......++..+|++|+|+|+++.. +|+ ....++..+...
T Consensus 82 -----------~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~------- 143 (458)
T 1f60_A 82 -----------TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL------- 143 (458)
T ss_dssp -----------CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT-------
T ss_pred -----------cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc-------
Confidence 23567999999999999998888999999999999999763 221 222233333332
Q ss_pred CCCCCCCCCCc-EEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHH
Q 019959 143 ASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEA 221 (333)
Q Consensus 143 ~~~~~~~~~~P-iivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~ 221 (333)
++| +|||+||+|+...+ .....++.++++.+++.+++.. +++++++ +||++|.|+++.
T Consensus 144 --------~v~~iivviNK~Dl~~~~--~~~~~~i~~~~~~~l~~~g~~~--~~~~~i~---------vSA~~g~nv~~~ 202 (458)
T 1f60_A 144 --------GVRQLIVAVNKMDSVKWD--ESRFQEIVKETSNFIKKVGYNP--KTVPFVP---------ISGWNGDNMIEA 202 (458)
T ss_dssp --------TCCEEEEEEECGGGGTTC--HHHHHHHHHHHHHHHHHHTCCG--GGCCEEE---------CCTTTCBTTTBC
T ss_pred --------CCCeEEEEEEccccccCC--HHHHHHHHHHHHHHHHHcCCCc--cCceEEE---------eecccCcCcccc
Confidence 455 99999999997421 1001123456777777777521 1257887 999999998754
No 168
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.71 E-value=2.3e-18 Score=168.93 Aligned_cols=164 Identities=18% Similarity=0.122 Sum_probs=93.4
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC--CCCC-----------------------------CCCcccceeEEEEEEEeCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG--SSFS-----------------------------RPSQTIGCTVGVKHITYGS 67 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~--~~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 67 (333)
...++|+++|..++|||||+++|+.. .+.. +....++++.....+.+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-- 118 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-- 118 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC--
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec--
Confidence 45689999999999999999999742 2210 00011112222222322
Q ss_pred CCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcc---cHHHHHHHH---HHHHhcCCCCCC
Q 019959 68 SGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR---TKTSLQKWA---VEIATSGTFSAP 141 (333)
Q Consensus 68 ~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~---S~~~l~~~~---~~i~~~~~~~~~ 141 (333)
....+.||||||+++|.......+..+|++|+|+|+++.. +|+....|. ..+...
T Consensus 119 -------------~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~------ 179 (467)
T 1r5b_A 119 -------------EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ------ 179 (467)
T ss_dssp -------------SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT------
T ss_pred -------------CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHc------
Confidence 2467999999999999988888899999999999999862 333211222 222222
Q ss_pred CCCCCCCCCCCc-EEEEeeCcCCCCccCCccCcccHHHHHHHHHHHc-CCCCCCcCCCccccCCCCCceeeeeccCcCHH
Q 019959 142 LASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQ-GLLPSSEELPLTESFPGGGGLIAAAKEARYDK 219 (333)
Q Consensus 142 ~~~~~~~~~~~P-iivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~-~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~ 219 (333)
++| +|||+||+|+...+..+-...++.+++..+++.+ |+.. ..++++++ +||++|.|++
T Consensus 180 ---------~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~-~~~~~~i~---------vSA~~g~~i~ 240 (467)
T 1r5b_A 180 ---------GINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNS-KTDVKYMP---------VSAYTGQNVK 240 (467)
T ss_dssp ---------TCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCH-HHHEEEEE---------CBTTTTBTTS
T ss_pred ---------CCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCc-cCCceEEe---------cccccccccc
Confidence 577 9999999999642110000112235677777776 6430 01256777 9999999998
Q ss_pred HHH
Q 019959 220 EAV 222 (333)
Q Consensus 220 ~~~ 222 (333)
+++
T Consensus 241 ~l~ 243 (467)
T 1r5b_A 241 DRV 243 (467)
T ss_dssp SCC
T ss_pred ccc
Confidence 765
No 169
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.71 E-value=1.9e-17 Score=166.37 Aligned_cols=182 Identities=20% Similarity=0.181 Sum_probs=109.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCC----CCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSR----PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
+..+|+|+|..++|||||+++|++..+... ..++++..+..........+....... .+.....+.||||||+++
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~-v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFS-IRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCG-GGGTCCEEEEECCCTTSC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccc-cccccCCEEEEECCCcHH
Confidence 346999999999999999999997654332 223444433221100000000000000 001123599999999999
Q ss_pred hhhhHHhhccCCcEEEEEEECCC---cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCcc-
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQ---RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRG- 171 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~---~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v- 171 (333)
|..++..+++.+|++|+|||+++ +.+++.+.. +... ++|+++|+||+|+........
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~~---------------~vPiIVViNKiDl~~~~~~~~~ 143 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRMY---------------RTPFVVAANKIDRIHGWRVHEG 143 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHHT---------------TCCEEEEEECGGGSTTCCCCTT
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHHc---------------CCeEEEEecccccccccccccC
Confidence 99998888999999999999999 555554432 2222 689999999999974311000
Q ss_pred ---------Ccc----cHHHHHHHH---HHHcCCC--------CCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 172 ---------SSG----NLVDAARQW---VEKQGLL--------PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 172 ---------~~~----~~~~~~~~~---~~~~~~~--------~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
... .+.+.+.++ ..+.++. .+...+|+++ +||++|.|++++++.+..
T Consensus 144 ~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~---------vSA~tG~GI~eLl~~I~~ 214 (594)
T 1g7s_A 144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIP---------ISAITGEGIPELLTMLMG 214 (594)
T ss_dssp CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEE---------CCTTTCTTHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEE---------EeccCCCCchhHHHHHHh
Confidence 000 001111112 2223331 0112246777 999999999999998887
Q ss_pred HHH
Q 019959 228 MLI 230 (333)
Q Consensus 228 ~l~ 230 (333)
.+-
T Consensus 215 ~~~ 217 (594)
T 1g7s_A 215 LAQ 217 (594)
T ss_dssp HHH
T ss_pred hcc
Confidence 654
No 170
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.71 E-value=2e-18 Score=169.80 Aligned_cols=159 Identities=20% Similarity=0.231 Sum_probs=105.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+..+|+|+|..++|||||+++|++..+......+++.+.....+.++ ...+.||||||++.|..+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~---------------~~~i~~iDTPGhe~f~~~ 67 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE---------------NGMITFLDTPGHAAFTSM 67 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT---------------SSCCCEECCCTTTCCTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC---------------CEEEEEEECCCcHHHHHH
Confidence 34589999999999999999999765544443333333322222221 235899999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+...+..+|++|+|||+++....+....| ..+... ++|+|+|+||+|+...+...+.. +
T Consensus 68 ~~~~~~~aD~aILVVda~~g~~~qT~e~l-~~~~~~---------------~vPiIVviNKiDl~~~~~~~v~~----~- 126 (501)
T 1zo1_I 68 RARGAQATDIVVLVVAADDGVMPQTIEAI-QHAKAA---------------QVPVVVAVNKIDKPEADPDRVKN----E- 126 (501)
T ss_dssp BCSSSBSCSSEEEEEETTTBSCTTTHHHH-HHHHHT---------------TCCEEEEEECSSSSTTCCCCTTC----C-
T ss_pred HHHHHhhCCEEEEEeecccCccHHHHHHH-HHHHhc---------------CceEEEEEEeccccccCHHHHHH----H-
Confidence 88889999999999999984332222222 222222 68999999999997643222221 0
Q ss_pred HHHHHHHcCCC--CCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 180 ARQWVEKQGLL--PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 180 ~~~~~~~~~~~--~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
....++. .+...+|+++ +||++|.|++++++.+..
T Consensus 127 ----l~~~~~~~~~~~~~~~~v~---------vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 127 ----LSQYGILPEEWGGESQFVH---------VSAKAGTGIDELLDAILL 163 (501)
T ss_dssp ----CCCCCCCTTCCSSSCEEEE---------CCTTTCTTCTTHHHHTTT
T ss_pred ----HHHhhhhHHHhCCCccEEE---------EeeeeccCcchhhhhhhh
Confidence 0011111 1111356777 999999999988887753
No 171
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.70 E-value=5.5e-17 Score=170.80 Aligned_cols=156 Identities=20% Similarity=0.239 Sum_probs=104.4
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcC-------CCCC-------CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceE
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKG-------SSFS-------RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDF 83 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~-------~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 83 (333)
....++|+|+|..++|||||+++|++. .+.. ....+.|.++....+.+. ....
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~-------------~~~~ 359 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD-------------TPTR 359 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEE-------------CSSC
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEc-------------CCCE
Confidence 345689999999999999999999863 1100 111233444433334443 3456
Q ss_pred EEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcC
Q 019959 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKAD 162 (333)
Q Consensus 84 ~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~D 162 (333)
.+.||||||+++|......++..+|++|+|+|+++....+. ..|+..+... ++| +|||+||+|
T Consensus 360 kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~l---------------gIP~IIVVINKiD 423 (1289)
T 3avx_A 360 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQV---------------GVPYIIVFLNKCD 423 (1289)
T ss_dssp EEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHHH---------------TCSCEEEEEECCT
T ss_pred EEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHHc---------------CCCeEEEEEeecc
Confidence 79999999999999888888999999999999998754433 3455555544 578 789999999
Q ss_pred CCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCc
Q 019959 163 VAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR 216 (333)
Q Consensus 163 l~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~ 216 (333)
+.... .. ...+.++++++++.+++.. +++|+++ +||++|.
T Consensus 424 Lv~d~--e~-le~i~eEi~elLk~~G~~~--~~vp~Ip---------vSAktG~ 463 (1289)
T 3avx_A 424 MVDDE--EL-LELVEMEVRELLSQYDFPG--DDTPIVR---------GSALKAL 463 (1289)
T ss_dssp TCCCH--HH-HHHHHHHHHHHHHHTTSCT--TTCCEEE---------CCSTTTT
T ss_pred cccch--hh-HHHHHHHHHHHHHhccccc--cceeEEE---------EEeccCC
Confidence 98531 10 0112356777888877521 1367888 9999993
No 172
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.69 E-value=4.7e-17 Score=154.97 Aligned_cols=151 Identities=7% Similarity=-0.013 Sum_probs=103.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
+|+++|..++|||||+++|+ ....|+. .....+.. ....+.||||||+++|......
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~--~~~~~~~~---------------~~~~i~iiDtPGh~~f~~~~~~ 79 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSD--ITMYNNDK---------------EGRNMVFVDAHSYPKTLKSLIT 79 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESS--SEEEEECS---------------SSSEEEEEECTTTTTCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEE--eeEEEEec---------------CCeEEEEEECCChHHHHHHHHH
Confidence 89999999999999999998 2222322 22233332 2456999999999999887777
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcE-EEEee-CcCCCCccCCccCcccHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY-VVIGN-KADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pi-ivVgN-K~Dl~~~~~r~v~~~~~~~~~ 180 (333)
.++.+|++|+|+| ++ ..+.....|+..+... ++|. |+|+| |+|+ +.. .+. ++.+++
T Consensus 80 ~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~~---------------~i~~~ivvvNNK~Dl-~~~--~~~--~~~~~i 137 (370)
T 2elf_A 80 ALNISDIAVLCIP-PQ-GLDAHTGECIIALDLL---------------GFKHGIIALTRSDST-HMH--AID--ELKAKL 137 (370)
T ss_dssp HHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHHT---------------TCCEEEEEECCGGGS-CHH--HHH--HHHHHH
T ss_pred HHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHHc---------------CCCeEEEEEEeccCC-CHH--HHH--HHHHHH
Confidence 8899999999999 54 4455566676666555 4676 88888 9999 431 110 011334
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCcee--eeecc---CcCHHHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLI--AAAKE---ARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~--~SAk~---g~~v~~~~~~l~~~l~~ 231 (333)
+++++..++ ....++. +||++ |.|++++++.+.+.+-.
T Consensus 138 ~~~l~~~~~-------------~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 138 KVITSGTVL-------------QDWECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp HHHTTTSTT-------------TTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-------------CceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 444333332 1223456 89999 99999999988877643
No 173
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.68 E-value=3.2e-16 Score=142.15 Aligned_cols=122 Identities=20% Similarity=0.254 Sum_probs=82.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
...++|+|+|.+|||||||+++|++..+. ....+..+.......+.++ ...+.||||||++++.
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~l~liDTpG~~~~~ 98 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG---------------GFTINIIDTPGLVEAG 98 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEET---------------TEEEEEEECCCSEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEEC---------------CeeEEEEECCCCCCcc
Confidence 35789999999999999999999987752 2222222223333334433 4579999999987765
Q ss_pred hhHHhhcc---------CCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 98 DCRSILYS---------QINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 98 ~~~~~~~~---------~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
.....+++ .+|++|+|+|++... +... ..|+..+...... ....|+++|+||+|+...
T Consensus 99 ~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~----------~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 99 YVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGK----------EIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp EECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCG----------GGGGGEEEEEECTTCCCS
T ss_pred cchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhch----------hhhcCEEEEEeCcccCCC
Confidence 44333332 789999999998755 4333 4677777665320 012489999999999754
No 174
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.66 E-value=1e-17 Score=168.62 Aligned_cols=159 Identities=16% Similarity=0.148 Sum_probs=83.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCC--CC-----------------------------CCCCcccceeEEEEEEEeC
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGS--SF-----------------------------SRPSQTIGCTVGVKHITYG 66 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~ 66 (333)
....++|+|+|.+++|||||+++|++.. +. .+..++++.+.....+..
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~- 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES- 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence 3456899999999999999999997421 10 011122222222222222
Q ss_pred CCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcc---cH---HHHHHHHHHHHhcCCCCC
Q 019959 67 SSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR---TK---TSLQKWAVEIATSGTFSA 140 (333)
Q Consensus 67 ~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~---S~---~~l~~~~~~i~~~~~~~~ 140 (333)
....+.||||||+++|......++..+|++|+|+|+++.. .+ .....++..+...
T Consensus 253 --------------~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l----- 313 (592)
T 3mca_A 253 --------------DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL----- 313 (592)
T ss_dssp --------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS-----
T ss_pred --------------CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc-----
Confidence 2467899999999999888888889999999999998642 11 0111122222233
Q ss_pred CCCCCCCCCCCCc-EEEEeeCcCCCCccCCccCcccHHHHHHHHH-HHcCCCCCCcCCCccccCCCCCceeeeeccCcCH
Q 019959 141 PLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNLVDAARQWV-EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYD 218 (333)
Q Consensus 141 ~~~~~~~~~~~~P-iivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~-~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v 218 (333)
++| +|||+||+|+.... .....++.++...+. +.+|+.. +.+++++ +||++|.|+
T Consensus 314 ----------gip~iIvviNKiDl~~~~--~~~~~~i~~el~~~l~~~~g~~~--~~~~ii~---------iSA~~G~gI 370 (592)
T 3mca_A 314 ----------GISEIVVSVNKLDLMSWS--EDRFQEIKNIVSDFLIKMVGFKT--SNVHFVP---------ISAISGTNL 370 (592)
T ss_dssp ----------SCCCEEEEEECGGGGTTC--HHHHHHHHHHHHHHHTTTSCCCG--GGEEEEE---------ECSSSCSSS
T ss_pred ----------CCCeEEEEEecccccccc--HHHHHHHHHHHHHHHHHhhCCCc--cceEEEE---------EecccCccc
Confidence 455 99999999997521 100111123344444 3345421 1356777 999999999
Q ss_pred H
Q 019959 219 K 219 (333)
Q Consensus 219 ~ 219 (333)
+
T Consensus 371 ~ 371 (592)
T 3mca_A 371 I 371 (592)
T ss_dssp C
T ss_pred c
Confidence 7
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.65 E-value=4.4e-16 Score=158.85 Aligned_cols=131 Identities=15% Similarity=0.065 Sum_probs=91.1
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCc----------------ccceeEEEEEEEeCCCCCCCCccCCCCCceE
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ----------------TIGCTVGVKHITYGSSGSSSNSIKGDSERDF 83 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~----------------t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 83 (333)
...+|+|+|..|+|||||+++|++......... ..++++......+. ...+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~-------------~~~~ 74 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL-------------FRGH 74 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEE-------------ETTE
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEe-------------eCCE
Confidence 446899999999999999999994332111100 11233333333332 2357
Q ss_pred EEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC
Q 019959 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163 (333)
Q Consensus 84 ~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl 163 (333)
.++||||+|+++|......+++.+|++|+|+|+++....... .|+..+... ++|+++|+||+|+
T Consensus 75 ~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~~---------------~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 75 RVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAERL---------------GLPRMVVVTKLDK 138 (665)
T ss_dssp EEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT---------------TCCEEEEEECGGG
T ss_pred EEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHHc---------------cCCEEEEecCCch
Confidence 899999999999998888899999999999999887665544 444555444 5899999999998
Q ss_pred CCccCCccCcccHHHHHHHHHHHcC
Q 019959 164 AAKEGTRGSSGNLVDAARQWVEKQG 188 (333)
Q Consensus 164 ~~~~~r~v~~~~~~~~~~~~~~~~~ 188 (333)
. .. . .+.++++++.++
T Consensus 139 ~-~~----~----~~~~~~l~~~l~ 154 (665)
T 2dy1_A 139 G-GD----Y----YALLEDLRSTLG 154 (665)
T ss_dssp C-CC----H----HHHHHHHHHHHC
T ss_pred h-hh----H----HHHHHHHHHHhC
Confidence 7 32 1 244555655554
No 176
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.65 E-value=7.8e-17 Score=149.34 Aligned_cols=163 Identities=16% Similarity=0.167 Sum_probs=84.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC-CCCCCC--------CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEe
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG-SSFSRP--------SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWD 89 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~-~~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~D 89 (333)
.-.++|+|||++|||||||+++|++. .+.... .++.+... ..+... .++....+.+||
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~--~~~~~q-----------~~~~~~~ltv~D 82 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEA--STVEIE-----------ERGVKLRLTVVD 82 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC--------------------------CEEEEC--------------CCEEEEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEee--EEEEec-----------CCCcccCcchhh
Confidence 34589999999999999999998865 443322 11222111 111111 224567899999
Q ss_pred CCCc-------hhhhhhHH-------hhccC-------------CcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCC
Q 019959 90 ISGH-------ERYKDCRS-------ILYSQ-------------INGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142 (333)
Q Consensus 90 t~G~-------e~~~~~~~-------~~~~~-------------ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~ 142 (333)
|+|. +.+..+.. .++.. +++++++.+.+. .+++.+.. ..+....
T Consensus 83 t~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l~------ 153 (301)
T 2qnr_A 83 TPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAIH------ 153 (301)
T ss_dssp EC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHHT------
T ss_pred hhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHHH------
Confidence 9997 55555543 33332 334444444332 23444321 2233332
Q ss_pred CCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHH
Q 019959 143 ASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAV 222 (333)
Q Consensus 143 ~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~ 222 (333)
..+++++|+||+|+.......+. .+++.++++.++ ++|+| +||++| |++++|
T Consensus 154 -------~~~~iilV~~K~Dl~~~~e~~~~----~~~~~~~~~~~~-------~~~~e---------~Sa~~~-~v~e~f 205 (301)
T 2qnr_A 154 -------NKVNIVPVIAKADTLTLKERERL----KKRILDEIEEHN-------IKIYH---------LPDAES-DEDEDF 205 (301)
T ss_dssp -------TTSCEEEEECCGGGSCHHHHHHH----HHHHHHHHHHTT-------CCCCC---------CC----------C
T ss_pred -------hcCCEEEEEEeCCCCCHHHHHHH----HHHHHHHHHHcC-------CeEEe---------cCCccc-cccHHH
Confidence 25799999999999864211111 367788888887 45788 999999 999999
Q ss_pred HHHHHHHHH
Q 019959 223 MKFFRMLIR 231 (333)
Q Consensus 223 ~~l~~~l~~ 231 (333)
..+.+.+..
T Consensus 206 ~~l~~~i~~ 214 (301)
T 2qnr_A 206 KEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhc
Confidence 998887754
No 177
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.64 E-value=7.5e-17 Score=149.44 Aligned_cols=135 Identities=15% Similarity=0.077 Sum_probs=108.3
Q ss_pred HHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEE
Q 019959 36 SLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVH 114 (333)
Q Consensus 36 SLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 114 (333)
+|+.+|+.+.|. ..+.+|+|..+. ..+..+ + .+.|||+ +++|..+++.+++++|++|+||
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~-------------~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~ 92 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDET-------------G---SGVIENV--LHRKNLLTKPHVANVDQVILVV 92 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCS-------------S---SEEEEEE--CCCSCEETTTTEESCCEEEEEE
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCC-------------C---eEEEEEE--ccccceeeccccccCCEEEEEE
Confidence 688999999998 889999996554 222111 1 5899999 9999999999999999999999
Q ss_pred ECCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCC
Q 019959 115 DLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSS 193 (333)
Q Consensus 115 D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~ 193 (333)
|++++. ++..+..|+..+... ++|++||+||+||.+. +. .++++++++.++..
T Consensus 93 D~~~~~~s~~~l~~~l~~~~~~---------------~~piilv~NK~DL~~~--~~------v~~~~~~~~~~~~~--- 146 (301)
T 1u0l_A 93 TVKMPETSTYIIDKFLVLAEKN---------------ELETVMVINKMDLYDE--DD------LRKVRELEEIYSGL--- 146 (301)
T ss_dssp CSSTTCCCHHHHHHHHHHHHHT---------------TCEEEEEECCGGGCCH--HH------HHHHHHHHHHHTTT---
T ss_pred eCCCCCCCHHHHHHHHHHHHHC---------------CCCEEEEEeHHHcCCc--hh------HHHHHHHHHHHhhh---
Confidence 999998 799999999987653 6899999999999764 21 14467777776521
Q ss_pred cCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 194 EELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 194 ~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
++|+| |||++|.|++++|..+.
T Consensus 147 --~~~~~---------~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 147 --YPIVK---------TSAKTGMGIEELKEYLK 168 (301)
T ss_dssp --SCEEE---------CCTTTCTTHHHHHHHHS
T ss_pred --CcEEE---------EECCCCcCHHHHHHHhc
Confidence 35777 99999999999887664
No 178
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.64 E-value=1.2e-15 Score=146.06 Aligned_cols=133 Identities=13% Similarity=0.106 Sum_probs=98.7
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCC----------cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQ----------RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLP 151 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~----------~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 151 (333)
.+.+.||||+|+++++.++..+|++++++|+|||+++ ..+|+++..|+..+..... ..+
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~-----------~~~ 284 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW-----------LRT 284 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT-----------CSS
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc-----------CCC
Confidence 4889999999999999999999999999999999999 8899999999999987632 247
Q ss_pred CcEEEEeeCcCCCCccCC-ccCc---------------------cc--HHHHHHHHHHH-----cCCC-CCCcCCCcccc
Q 019959 152 VPYVVIGNKADVAAKEGT-RGSS---------------------GN--LVDAARQWVEK-----QGLL-PSSEELPLTES 201 (333)
Q Consensus 152 ~PiivVgNK~Dl~~~~~r-~v~~---------------------~~--~~~~~~~~~~~-----~~~~-~~~~~~p~~E~ 201 (333)
+|+||||||+||...... .++. ++ ..+++..|+.. .... .-...+.+++
T Consensus 285 ~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~- 363 (402)
T 1azs_C 285 ISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF- 363 (402)
T ss_dssp CCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE-
T ss_pred CeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE-
Confidence 999999999998643110 0110 11 14566666422 1000 0000134556
Q ss_pred CCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 202 FPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 202 ~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
|||+++.||+++|..+.+.+++..+
T Consensus 364 --------TSA~d~~nV~~vF~~v~~~I~~~~l 388 (402)
T 1azs_C 364 --------TCAVDTENIRRVFNDCRDIIQRMHL 388 (402)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred --------EEeecCcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988887655
No 179
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.63 E-value=2.4e-15 Score=153.96 Aligned_cols=116 Identities=21% Similarity=0.231 Sum_probs=85.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcC--CCC------C------------CCCcccceeEEEEEEEeCCCCCCCCccCC
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKG--SSF------S------------RPSQTIGCTVGVKHITYGSSGSSSNSIKG 77 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~--~~~------~------------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~ 77 (333)
.....+|+|+|..|+|||||+++|+.. .+. . ....|+... ...+.+
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~--~~~~~~------------ 74 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFW------------ 74 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC--EEEEEE------------
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc--eEEEEE------------
Confidence 456689999999999999999999832 110 0 111222211 122222
Q ss_pred CCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEE
Q 019959 78 DSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVI 157 (333)
Q Consensus 78 ~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivV 157 (333)
..+.++||||||+.+|......+++.+|++|+|+|+++..++.....|.. +... ++|+++|
T Consensus 75 ---~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~---------------~~p~ivv 135 (691)
T 1dar_A 75 ---KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY---------------KVPRIAF 135 (691)
T ss_dssp ---TTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT---------------TCCEEEE
T ss_pred ---CCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc---------------CCCEEEE
Confidence 25789999999999999999999999999999999999998888777764 3333 6899999
Q ss_pred eeCcCCCCc
Q 019959 158 GNKADVAAK 166 (333)
Q Consensus 158 gNK~Dl~~~ 166 (333)
+||+|+...
T Consensus 136 iNKiD~~~~ 144 (691)
T 1dar_A 136 ANKMDKTGA 144 (691)
T ss_dssp EECTTSTTC
T ss_pred EECCCcccC
Confidence 999999754
No 180
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.63 E-value=6.5e-16 Score=146.52 Aligned_cols=129 Identities=11% Similarity=0.119 Sum_probs=92.9
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCC----------cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQ----------RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLP 151 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~----------~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 151 (333)
.+.+.||||+|++.++..+..++++++++|||||+++ ..++.+...|+..+..... ..+
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~-----------~~~ 268 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV-----------FSN 268 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG-----------GTT
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh-----------hCC
Confidence 4789999999999999999999999999999999999 7789999999999876532 137
Q ss_pred CcEEEEeeCcCCCCcc--------------CCccCcccHHHHHHHHHHHc--CCCCC--CcCCCccccCCCCCceeeeec
Q 019959 152 VPYVVIGNKADVAAKE--------------GTRGSSGNLVDAARQWVEKQ--GLLPS--SEELPLTESFPGGGGLIAAAK 213 (333)
Q Consensus 152 ~PiivVgNK~Dl~~~~--------------~r~v~~~~~~~~~~~~~~~~--~~~~~--~~~~p~~E~~~~~~~~~~SAk 213 (333)
+|+||||||+||..+. +..++ .+++..++... .+... ...+.+++ |||+
T Consensus 269 ~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~----~~e~~~~~~~~f~~l~~~~~~~~~~~~~---------tSA~ 335 (362)
T 1zcb_A 269 VSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHC----LRDVQKFLVECFRGKRRDQQQRPLYHHF---------TTAI 335 (362)
T ss_dssp SEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTC----HHHHHHHHHHHHHTTCSSCC--CCEEEE---------CCTT
T ss_pred CCEEEEEEChhhhhhhccccchhhcCccccCCCCC----HHHHHHHHHHHHHHhhcccCCCceEEEE---------EecC
Confidence 9999999999996431 11133 46777776321 11110 11255667 9999
Q ss_pred cCcCHHHHHHHHHHHHHHHHh
Q 019959 214 EARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 214 ~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++.||+++|+.+.+.+++..+
T Consensus 336 d~~nV~~vF~~v~~~i~~~~l 356 (362)
T 1zcb_A 336 NTENIRLVFRDVKDTILHDNL 356 (362)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999888765
No 181
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.63 E-value=4.1e-16 Score=147.85 Aligned_cols=117 Identities=15% Similarity=0.075 Sum_probs=75.9
Q ss_pred EEEEEeCCCchhh-------------hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 019959 84 FVELWDISGHERY-------------KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGL 150 (333)
Q Consensus 84 ~l~i~Dt~G~e~~-------------~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 150 (333)
.+.||||||..++ ..+...|+.++|++|+|+|.++..... ..|+..+..... .
T Consensus 137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~------------~ 202 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDP------------S 202 (360)
T ss_dssp SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCT------------T
T ss_pred CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcc------------c
Confidence 5889999997776 667778899999999999987654332 234444444321 2
Q ss_pred CCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 151 PVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 151 ~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+.|+|+|+||+|+.+.. ... .+.++.++..+ .++|++ +|++++.++++.+........
T Consensus 203 ~~~~i~V~nK~Dl~~~~--~~~----~~~~~~~~~~~-------~~~~~~---------v~~~s~~~i~~~~~~~~~~~~ 260 (360)
T 3t34_A 203 GDRTFGVLTKIDLMDKG--TDA----VEILEGRSFKL-------KYPWVG---------VVNRSQADINKNVDMIAARKR 260 (360)
T ss_dssp CTTEEEEEECGGGCCTT--CCS----HHHHTTSSSCC-------SSCCEE---------ECCCCHHHHHTTCCHHHHHHH
T ss_pred CCCEEEEEeCCccCCCc--ccH----HHHHcCccccc-------cCCeEE---------EEECChHHhccCCCHHHHHHH
Confidence 57999999999998652 221 12222211111 256777 999999888776665555444
Q ss_pred HHHhcc
Q 019959 231 RRRYFS 236 (333)
Q Consensus 231 ~~~~~~ 236 (333)
+..++.
T Consensus 261 e~~ff~ 266 (360)
T 3t34_A 261 EREYFS 266 (360)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 444443
No 182
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.62 E-value=1.5e-15 Score=138.26 Aligned_cols=123 Identities=21% Similarity=0.190 Sum_probs=80.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...++|+|+|.+|||||||+|+|++..+.... .+.+.+.......+. ...+.+.||||||.+++..
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~-------------~~~~~l~iiDTpG~~~~~~ 102 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSIS-PFQSEGPRPVMVSRS-------------RAGFTLNIIDTPGLIEGGY 102 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSSCCCSSCEEEEEE-------------ETTEEEEEEECCCSEETTE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCcceeeEEEEEe-------------eCCeEEEEEECCCCCCCcc
Confidence 44689999999999999999999987753211 111222222222222 2356799999999866542
Q ss_pred hH-------Hh--hccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 99 CR-------SI--LYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 99 ~~-------~~--~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
.. .. ....+|++|+|||++.. ++... ..|+..+...... ....|+++|+||+|+...
T Consensus 103 ~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~----------~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 103 INDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGK----------GIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp ECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCG----------GGGGGEEEEEECCSCCCG
T ss_pred chHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCc----------ccccCEEEEEECcccCCc
Confidence 21 11 23479999999999764 34433 4677777655210 012699999999999765
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.62 E-value=3.9e-15 Score=152.52 Aligned_cols=68 Identities=16% Similarity=0.081 Sum_probs=54.1
Q ss_pred EEEEEeCCCchh---hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 84 FVELWDISGHER---YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 84 ~l~i~Dt~G~e~---~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
.+.||||||... .......++..+|++|+|+|+++..+...+..|...+... +.|+++|+||
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~---------------~~~iiiVlNK 239 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGR---------------GLTVFFLVNA 239 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTS---------------CCCEEEEEEC
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhh---------------CCCEEEEEEC
Confidence 489999999655 3445556789999999999999998888887776555333 4689999999
Q ss_pred cCCCCc
Q 019959 161 ADVAAK 166 (333)
Q Consensus 161 ~Dl~~~ 166 (333)
+|+...
T Consensus 240 ~Dl~~~ 245 (695)
T 2j69_A 240 WDQVRE 245 (695)
T ss_dssp GGGGGG
T ss_pred cccccc
Confidence 999754
No 184
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.60 E-value=1e-15 Score=152.06 Aligned_cols=133 Identities=14% Similarity=0.221 Sum_probs=87.4
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-CCC-------------------CCcccceeEEEEEEEeCCCCCCCCccCCCC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSS-FSR-------------------PSQTIGCTVGVKHITYGSSGSSSNSIKGDS 79 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~-------------------~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~ 79 (333)
...+|+|+|.+|+|||||+++|+...- ... ...+.|.++......+.
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~------------- 78 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFP------------- 78 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEE-------------
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEE-------------
Confidence 347999999999999999999995311 100 00122222222222221
Q ss_pred CceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEee
Q 019959 80 ERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 159 (333)
Q Consensus 80 ~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgN 159 (333)
...+.+.||||||+++|......++..+|++|+|+|+++...... ..++..+.. .++|+++|+|
T Consensus 79 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~---------------~~ipiivviN 142 (529)
T 2h5e_A 79 YHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL---------------RDTPILTFMN 142 (529)
T ss_dssp ETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT---------------TTCCEEEEEE
T ss_pred ECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH---------------cCCCEEEEEc
Confidence 235789999999999999888889999999999999998754332 223333322 2689999999
Q ss_pred CcCCCCccCCccCcccHHHHHHHHHHHcCC
Q 019959 160 KADVAAKEGTRGSSGNLVDAARQWVEKQGL 189 (333)
Q Consensus 160 K~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~ 189 (333)
|+|+..... .+...++.+.++.
T Consensus 143 K~Dl~~~~~--------~~~~~~i~~~l~~ 164 (529)
T 2h5e_A 143 KLDRDIRDP--------MELLDEVENELKI 164 (529)
T ss_dssp CTTSCCSCH--------HHHHHHHHHHHCC
T ss_pred CcCCccccH--------HHHHHHHHHHhCC
Confidence 999976421 1345566666664
No 185
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.60 E-value=2.3e-14 Score=146.96 Aligned_cols=125 Identities=15% Similarity=0.118 Sum_probs=87.2
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcC--CCCC-----------CCC---cccceeEEE--EEEEeCCCCCCCCccCCCC
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKG--SSFS-----------RPS---QTIGCTVGV--KHITYGSSGSSSNSIKGDS 79 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~--~~~~-----------~~~---~t~~~~~~~--~~~~~~~~~~~~~~i~~~~ 79 (333)
.....+|+|+|..|+|||||+++|+.. .+.. .+. ...+.++.. ..+.+.+. ..+
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~--------~~~ 78 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGM--------AKQ 78 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCc--------ccc
Confidence 455679999999999999999999843 1111 000 011222222 22333210 012
Q ss_pred CceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEee
Q 019959 80 ERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 159 (333)
Q Consensus 80 ~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgN 159 (333)
+..+.++||||||+.+|......+++.+|++|+|+|+++....+....|.. +... ++|+++|+|
T Consensus 79 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~~---------------~ip~ilviN 142 (704)
T 2rdo_7 79 YEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANKY---------------KVPRIAFVN 142 (704)
T ss_pred CCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHHc---------------CCCEEEEEe
Confidence 455889999999999999988889999999999999999877766655643 3332 689999999
Q ss_pred CcCCCCc
Q 019959 160 KADVAAK 166 (333)
Q Consensus 160 K~Dl~~~ 166 (333)
|+|+...
T Consensus 143 KiD~~~~ 149 (704)
T 2rdo_7 143 KMDRMGA 149 (704)
T ss_pred CCCcccc
Confidence 9998754
No 186
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.60 E-value=1e-14 Score=149.33 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=85.9
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHc--CCCCC-----------CC-----CcccceeEEEEEEEeCCCCCCCCccCCC
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVK--GSSFS-----------RP-----SQTIGCTVGVKHITYGSSGSSSNSIKGD 78 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~--~~~~~-----------~~-----~~t~~~~~~~~~~~~~~~~~~~~~i~~~ 78 (333)
+.....+|+|+|.+|+|||||+++|+. +.+.. .+ ...+........+.+
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~------------- 72 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW------------- 72 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-------------
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-------------
Confidence 345678999999999999999999994 22210 00 001111111122222
Q ss_pred CCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEe
Q 019959 79 SERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 158 (333)
Q Consensus 79 ~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVg 158 (333)
..+.++||||||+.+|......+++.+|++|+|+|+++..++.....|.. +... ++|+++|+
T Consensus 73 --~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~---------------~~p~ilvi 134 (693)
T 2xex_A 73 --EGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY---------------GVPRIVFV 134 (693)
T ss_dssp --TTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT---------------TCCEEEEE
T ss_pred --CCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc---------------CCCEEEEE
Confidence 24789999999999998888889999999999999999988887766654 4443 58999999
Q ss_pred eCcCCCCc
Q 019959 159 NKADVAAK 166 (333)
Q Consensus 159 NK~Dl~~~ 166 (333)
||+|+...
T Consensus 135 NK~Dl~~~ 142 (693)
T 2xex_A 135 NKMDKLGA 142 (693)
T ss_dssp ECTTSTTC
T ss_pred ECCCcccc
Confidence 99999764
No 187
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.59 E-value=4.1e-15 Score=137.79 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=47.3
Q ss_pred EEEEEEeCCCchh-------------hhhhHHhhccCCcEEEEEEECCCcccH-HHHHHHHHHHHhcCCCCCCCCCCCCC
Q 019959 83 FFVELWDISGHER-------------YKDCRSILYSQINGVIFVHDLSQRRTK-TSLQKWAVEIATSGTFSAPLASGGPG 148 (333)
Q Consensus 83 ~~l~i~Dt~G~e~-------------~~~~~~~~~~~ad~vIlV~D~s~~~S~-~~l~~~~~~i~~~~~~~~~~~~~~~~ 148 (333)
..+.||||||..+ +......++..+|++|+|+|.++.... .....++..+..
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~-------------- 196 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP-------------- 196 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--------------
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--------------
Confidence 4699999999643 556667788999999999998543311 111123333322
Q ss_pred CCCCcEEEEeeCcCCCCc
Q 019959 149 GLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 149 ~~~~PiivVgNK~Dl~~~ 166 (333)
.+.|+++|+||+|+...
T Consensus 197 -~~~~~i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 197 -EGKRTIGVITKLDLMDK 213 (315)
T ss_dssp -SCSSEEEEEECTTSSCS
T ss_pred -CCCcEEEEEcCcccCCc
Confidence 26899999999999865
No 188
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.58 E-value=1.6e-15 Score=143.45 Aligned_cols=111 Identities=16% Similarity=0.142 Sum_probs=64.4
Q ss_pred EEEEEEeCCCch-------------hhhhhHHhhccCCcEEEE-EEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 019959 83 FFVELWDISGHE-------------RYKDCRSILYSQINGVIF-VHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPG 148 (333)
Q Consensus 83 ~~l~i~Dt~G~e-------------~~~~~~~~~~~~ad~vIl-V~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~ 148 (333)
..+.||||||.. .+..+...|+..++.+|+ |.|++....-.....++..+..
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~-------------- 195 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDP-------------- 195 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCT--------------
T ss_pred CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCc--------------
Confidence 469999999952 455666677776665555 5565543222222234444322
Q ss_pred CCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 149 GLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 149 ~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
.+.|+++|+||+|+.+... . +..+.+......-....++++ +||++|.|++++++.+.+
T Consensus 196 -~~~~~i~V~NK~Dl~~~~~-~---------~~~~~~~~~~~l~~~~~~v~~---------~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 196 -QGQRTIGVITKLDLMDEGT-D---------ARDVLENKLLPLRRGYIGVVN---------RSQKDIDGKKDITAALAA 254 (353)
T ss_dssp -TCTTEEEEEECGGGSCTTC-C---------CHHHHTTCSSCCTTCEEECCC---------CCHHHHHTTCCHHHHHHH
T ss_pred -CCCceEEEeccccccCcch-h---------HHHHHhCCcccccCCceEEEe---------CCcccccccccHHHHHHH
Confidence 2689999999999986421 1 111221110000000124566 999999999888888765
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.57 E-value=4.2e-15 Score=143.31 Aligned_cols=160 Identities=13% Similarity=0.162 Sum_probs=83.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCC--------CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRP--------SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDI 90 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt 90 (333)
.-.++|+|||++|||||||+++|++..+.... ..+++.+ .+.+. -...+....+.+||+
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~----~i~~v---------~q~~~~~~~Ltv~Dt 95 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVE----QSKVL---------IKEGGVQLLLTIVDT 95 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEE----EEECC---------------CEEEEEEEC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeee----eEEEE---------EecCCcccceeeeec
Confidence 34579999999999999999999987653211 1222211 11111 001244567999999
Q ss_pred CCchhhh-------hh------------------HHhhccCCcEEEEEEECCCc-ccHHHHH-HHHHHHHhcCCCCCCCC
Q 019959 91 SGHERYK-------DC------------------RSILYSQINGVIFVHDLSQR-RTKTSLQ-KWAVEIATSGTFSAPLA 143 (333)
Q Consensus 91 ~G~e~~~-------~~------------------~~~~~~~ad~vIlV~D~s~~-~S~~~l~-~~~~~i~~~~~~~~~~~ 143 (333)
+|...+. .+ ...++.++++.+++|+.+.. .++..+. .|+..+..
T Consensus 96 ~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~--------- 166 (418)
T 2qag_C 96 PGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE--------- 166 (418)
T ss_dssp C-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT---------
T ss_pred hhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc---------
Confidence 9976541 11 12345566665666666543 3555553 57766632
Q ss_pred CCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHH
Q 019959 144 SGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVM 223 (333)
Q Consensus 144 ~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~ 223 (333)
++|+|+|+||+|+... +++. ...+.+.+++..++ +++++ +||+++.++++++.
T Consensus 167 -------~v~iIlVinK~Dll~~--~ev~--~~k~~i~~~~~~~~-------i~~~~---------~sa~~~~~v~~~~~ 219 (418)
T 2qag_C 167 -------KVNIIPLIAKADTLTP--EECQ--QFKKQIMKEIQEHK-------IKIYE---------FPETDDEEENKLVK 219 (418)
T ss_dssp -------TSEEEEEEESTTSSCH--HHHH--HHHHHHHHHHHHHT-------CCCCC---------CC------------
T ss_pred -------cCcEEEEEEcccCccH--HHHH--HHHHHHHHHHHHcC-------CeEEe---------CCCCCCcCHHHHHH
Confidence 5899999999999764 2222 11256777777777 46777 99999988877655
Q ss_pred HHHH
Q 019959 224 KFFR 227 (333)
Q Consensus 224 ~l~~ 227 (333)
.+..
T Consensus 220 ~l~~ 223 (418)
T 2qag_C 220 KIKD 223 (418)
T ss_dssp ----
T ss_pred HHHh
Confidence 5543
No 190
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.56 E-value=3.8e-14 Score=136.60 Aligned_cols=160 Identities=18% Similarity=0.162 Sum_probs=106.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh----hhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER----YKD 98 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~----~~~ 98 (333)
.|+|||++|||||||+++|++........+..+.......+.++ ....+.+||++|..+ +..
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~--------------~~~~~~l~DtpGli~~a~~~~~ 224 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS--------------EEERFTLADIPGIIEGASEGKG 224 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECS--------------SSCEEEEEECCCCCCCGGGSCC
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEec--------------CcceEEEEeccccccchhhhhh
Confidence 58999999999999999999764311111111222223334432 134689999999632 211
Q ss_pred hHHh---hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 99 CRSI---LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 99 ~~~~---~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
+... .+..++++++|+|++ ...+.++..|..++..... .....|.+||+||+|+....
T Consensus 225 L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~----------aL~~~P~ILVlNKlDl~~~~-------- 285 (416)
T 1udx_A 225 LGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDP----------ALLRRPSLVALNKVDLLEEE-------- 285 (416)
T ss_dssp SCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCH----------HHHHSCEEEEEECCTTSCHH--------
T ss_pred hhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhH----------HhhcCCEEEEEECCChhhHH--------
Confidence 2112 245799999999999 6778888888888766521 00147899999999997530
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
..+...++++..+ +++++ +||+++.|++++++.+.+.+..
T Consensus 286 ~~~~l~~~l~~~g-------~~vi~---------iSA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 286 AVKALADALAREG-------LAVLP---------VSALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp HHHHHHHHHHTTT-------SCEEE---------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC-------CeEEE---------EECCCccCHHHHHHHHHHHHHh
Confidence 1234444444434 45666 9999999999999999887754
No 191
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.55 E-value=1e-14 Score=139.96 Aligned_cols=98 Identities=17% Similarity=0.121 Sum_probs=49.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC--cccceeEEEEEEEeCCCCCCCCcc-------CCCCCceEEEEEEeCCC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPS--QTIGCTVGVKHITYGSSGSSSNSI-------KGDSERDFFVELWDISG 92 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~~i-------~~~~~~~~~l~i~Dt~G 92 (333)
+||+|||.+|||||||+|+|++........ .|+........+....+...-... .......+.+.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999999876432222 233333322222110000000000 00012257899999999
Q ss_pred chh----hhhhHH---hhccCCcEEEEEEECCCc
Q 019959 93 HER----YKDCRS---ILYSQINGVIFVHDLSQR 119 (333)
Q Consensus 93 ~e~----~~~~~~---~~~~~ad~vIlV~D~s~~ 119 (333)
..+ +..+.. .+++.+|++|+|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 754 233333 246899999999999986
No 192
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.52 E-value=3.4e-14 Score=148.31 Aligned_cols=129 Identities=19% Similarity=0.189 Sum_probs=88.2
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC------------CCCC------CCCcccceeEEEEEEEeCCCCCCCCcc-CCCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG------------SSFS------RPSQTIGCTVGVKHITYGSSGSSSNSI-KGDS 79 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~------------~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~~i-~~~~ 79 (333)
....+|+|+|..|+|||||+++|+.. .+.. ....|+........+..... ....+ ...+
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~--~~~~i~~~~~ 94 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDE--DVKEIKQKTD 94 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHH--HHHHCSSCCC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccc--cccccccccc
Confidence 45679999999999999999999853 1110 01112222222222221000 00000 0012
Q ss_pred CceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEee
Q 019959 80 ERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 159 (333)
Q Consensus 80 ~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgN 159 (333)
+..+.++||||||+.+|......+++.+|++|+|||+++..+++....|.... .. ++|+++|+|
T Consensus 95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~~---------------~~p~ilviN 158 (842)
T 1n0u_A 95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-GE---------------RIKPVVVIN 158 (842)
T ss_dssp SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-HT---------------TCEEEEEEE
T ss_pred CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-Hc---------------CCCeEEEEE
Confidence 55789999999999999999999999999999999999999998877776543 22 589999999
Q ss_pred CcCCCC
Q 019959 160 KADVAA 165 (333)
Q Consensus 160 K~Dl~~ 165 (333)
|+|+..
T Consensus 159 K~D~~~ 164 (842)
T 1n0u_A 159 KVDRAL 164 (842)
T ss_dssp CHHHHH
T ss_pred CCCcch
Confidence 999874
No 193
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.50 E-value=6.3e-14 Score=139.84 Aligned_cols=131 Identities=18% Similarity=0.243 Sum_probs=85.2
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCC---CCCCcccceeEEEEEEEeCCC-----CCC-----CCccCCC------
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSF---SRPSQTIGCTVGVKHITYGSS-----GSS-----SNSIKGD------ 78 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~-----~~~-----~~~i~~~------ 78 (333)
.....+|+|+|.+|||||||+|+|++..+. ....++... ...+..+.. +.+ ...+...
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~---~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~ 138 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC---FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNT 138 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS---EEEEECCSSSEEECCC------------------C
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce---EEEEEECCcccccCCceeeecCcccHHHHhhhccc
Confidence 345689999999999999999999988763 222322211 111111100 000 0000000
Q ss_pred --CC---------ceEEEEEEeCCCchh-----------hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcC
Q 019959 79 --SE---------RDFFVELWDISGHER-----------YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSG 136 (333)
Q Consensus 79 --~~---------~~~~l~i~Dt~G~e~-----------~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~ 136 (333)
.+ ....+.||||||... |......++..+|++|+|+|+++.........|+..+...
T Consensus 139 ~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~- 217 (550)
T 2qpt_A 139 FLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH- 217 (550)
T ss_dssp CCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC-
T ss_pred ccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc-
Confidence 00 002588999999764 5566677788999999999999876666667777776443
Q ss_pred CCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 137 TFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 137 ~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
+.|+++|+||+|+...
T Consensus 218 --------------~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 218 --------------EDKIRVVLNKADMVET 233 (550)
T ss_dssp --------------GGGEEEEEECGGGSCH
T ss_pred --------------CCCEEEEEECCCccCH
Confidence 5799999999999864
No 194
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.50 E-value=1.8e-14 Score=126.43 Aligned_cols=165 Identities=15% Similarity=0.052 Sum_probs=95.9
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEE------------EEEEEeCCCCCCCCccCC------C-CCc
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVG------------VKHITYGSSGSSSNSIKG------D-SER 81 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~------------~~~~~~~~~~~~~~~i~~------~-~~~ 81 (333)
..+|+|+|.+|||||||+++|+...........+..++. ...+.++.++. ..... . ...
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKE--CHLDAHMIYHRLKKFS 107 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTC--SSCCHHHHHTTGGGGT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCce--eecccHHHHHHHHhcC
Confidence 459999999999999999999865221111111111110 01122221110 00000 0 123
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+.+.||||+|+-... ..+....+++|+|+|+++.... ...+... . +.|+++|+||+
T Consensus 108 ~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~---~---------------~~~~iiv~NK~ 164 (221)
T 2wsm_A 108 DCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEI---F---------------RVADLIVINKV 164 (221)
T ss_dssp TCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHH---H---------------HTCSEEEEECG
T ss_pred CCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhh---h---------------hcCCEEEEecc
Confidence 4568999999951111 0112367899999999876431 1112211 1 46899999999
Q ss_pred CCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 162 DVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 162 Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
|+... +.+. .+++.++++.++. .+++++ +||++|.|++++++.+.+.+.
T Consensus 165 Dl~~~--~~~~----~~~~~~~~~~~~~-----~~~i~~---------~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 165 ALAEA--VGAD----VEKMKADAKLINP-----RAKIIE---------MDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp GGHHH--HTCC----HHHHHHHHHHHCT-----TSEEEE---------CBTTTTBTHHHHHHHHHHHHC
T ss_pred cCCcc--hhhH----HHHHHHHHHHhCC-----CCeEEE---------eecCCCCCHHHHHHHHHHHHH
Confidence 99643 1122 2556666666542 246777 999999999999998887654
No 195
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.50 E-value=3e-13 Score=127.79 Aligned_cols=95 Identities=17% Similarity=0.104 Sum_probs=55.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC--cccceeEEEEEEEeCCCCC--CCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPS--QTIGCTVGVKHITYGSSGS--SSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
++|+|||.+|||||||+|+|++..+..... .|++.+. ..+.+++..- -.............++||||+|..++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~--g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT--GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS--SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE--EEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 699999999999999999999876433222 2433333 2333321000 000000000002569999999987654
Q ss_pred ----hhHH---hhccCCcEEEEEEECCC
Q 019959 98 ----DCRS---ILYSQINGVIFVHDLSQ 118 (333)
Q Consensus 98 ----~~~~---~~~~~ad~vIlV~D~s~ 118 (333)
.+.. .+++.+|++++|+|+++
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2222 24789999999999987
No 196
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.49 E-value=3.5e-16 Score=137.89 Aligned_cols=168 Identities=13% Similarity=0.077 Sum_probs=95.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEE------------EEEEEeCCCCCCC-------CccCCCCC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVG------------VKHITYGSSGSSS-------NSIKGDSE 80 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~------------~~~~~~~~~~~~~-------~~i~~~~~ 80 (333)
..++|+|+|++|||||||+++|+...+...+..+++.++. .+.+.++.++... ..+.....
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 3479999999999999999999977665555566666554 2334333111000 00000001
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
....+.+.|++|.-.. ...+-...+.++.+.|......... ... .+ . ..|+++|+||
T Consensus 117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~~-~~--~---------------~~~~iiv~NK 173 (226)
T 2hf9_A 117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KHP-GI--M---------------KTADLIVINK 173 (226)
T ss_dssp GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TCH-HH--H---------------TTCSEEEEEC
T ss_pred CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hhh-hH--h---------------hcCCEEEEec
Confidence 1123556666662100 0011123445566666532211100 000 11 1 3578999999
Q ss_pred cCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 161 ADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 161 ~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+|+... +.+. .+++.++++.++. .+++++ +||++|.|++++|+.+.+.+.
T Consensus 174 ~Dl~~~--~~~~----~~~~~~~~~~~~~-----~~~~~~---------~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 174 IDLADA--VGAD----IKKMENDAKRINP-----DAEVVL---------LSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp GGGHHH--HTCC----HHHHHHHHHHHCT-----TSEEEE---------CCTTTCTTHHHHHHHHHHHHH
T ss_pred cccCch--hHHH----HHHHHHHHHHhCC-----CCeEEE---------EEecCCCCHHHHHHHHHHHHH
Confidence 999753 1222 3666777776542 256777 999999999999999887664
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.40 E-value=1.5e-12 Score=123.49 Aligned_cols=95 Identities=21% Similarity=0.260 Sum_probs=55.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CC-CCcccceeEEEEEEEeCCCC--CCCCccCCCC----CceEEEEEEeCCCc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSF-SR-PSQTIGCTVGVKHITYGSSG--SSSNSIKGDS----ERDFFVELWDISGH 93 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~-~~-~~~t~~~~~~~~~~~~~~~~--~~~~~i~~~~----~~~~~l~i~Dt~G~ 93 (333)
++|+|||.+|||||||+|+|++.... .. ...|+..+... ..++... .-...+.... -....++||||+|.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~--~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGV--VPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEE--EECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceee--EecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 58999999999999999999976422 11 12233333322 2221000 0000000000 02356999999997
Q ss_pred hhhh----hh---HHhhccCCcEEEEEEECCC
Q 019959 94 ERYK----DC---RSILYSQINGVIFVHDLSQ 118 (333)
Q Consensus 94 e~~~----~~---~~~~~~~ad~vIlV~D~s~ 118 (333)
.++. .+ ....++.+|++++|+|+++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 6542 12 2235789999999999986
No 198
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.38 E-value=1.7e-13 Score=129.69 Aligned_cols=111 Identities=18% Similarity=0.051 Sum_probs=69.9
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+.+.||||+|.... ....+..+|++|+|+|.+..+.+..+..+ ....|+++|+||+
T Consensus 171 ~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~~~--------------------~~~~p~ivVlNK~ 227 (355)
T 3p32_A 171 GFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIKKG--------------------VLELADIVVVNKA 227 (355)
T ss_dssp TCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCCTT--------------------SGGGCSEEEEECC
T ss_pred CCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHHHh--------------------HhhcCCEEEEECC
Confidence 466999999994321 22345889999999998876554332211 1246899999999
Q ss_pred CCCCccCCccCcccHHHHHHHHHHHc---CCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 162 DVAAKEGTRGSSGNLVDAARQWVEKQ---GLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 162 Dl~~~~~r~v~~~~~~~~~~~~~~~~---~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
|+..... . .....++...+ +.......+|+++ +||++|.|++++++.+.+.+..
T Consensus 228 Dl~~~~~--~-----~~~~~~l~~~l~~~~~~~~~~~~~vi~---------iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 228 DGEHHKE--A-----RLAARELSAAIRLIYPREALWRPPVLT---------MSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CGGGHHH--H-----HHHHHHHHHHHHHHSTTCCSCCCCEEE---------EBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCcChhH--H-----HHHHHHHHHHHhhccccccCCCCceEE---------EEcCCCCCHHHHHHHHHHHHHH
Confidence 9975311 0 11222333322 1100000256777 9999999999999998877643
No 199
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.34 E-value=7e-12 Score=119.06 Aligned_cols=119 Identities=18% Similarity=0.127 Sum_probs=78.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh--
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY-- 96 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~-- 96 (333)
.+..+|+|||.||||||||+|+|++........+..+.+.....+.++ ...++|+||||.-+.
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~---------------~~~i~l~D~pGl~~~a~ 134 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYK---------------GAKIQMLDLPGIIDGAK 134 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEET---------------TEEEEEEECGGGCCC--
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeC---------------CcEEEEEeCCCccCCch
Confidence 445699999999999999999999876554444555666666677765 457899999994221
Q ss_pred --hhh---HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 97 --KDC---RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 97 --~~~---~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
..+ .-..++.+|++++|+|++++. ........++..... .....|.+++.||+|..
T Consensus 135 ~~~~~g~~~l~~i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~----------~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 135 DGRGRGKQVIAVARTCNLLFIILDVNKPL--HHKQIIEKELEGVGI----------RLNKTPPDILIKKKEKG 195 (376)
T ss_dssp ---CHHHHHHHHHHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTE----------EETCCCCCEEEEECSSS
T ss_pred hhhHHHHHHHHHHHhcCccccccccCccH--HHHHHHHHHHHHhhH----------hhccCChhhhhhHhhhh
Confidence 111 122467899999999999864 333333344433311 01245667777888753
No 200
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.34 E-value=1.5e-11 Score=122.62 Aligned_cols=115 Identities=18% Similarity=0.256 Sum_probs=81.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC------------------CCCC--CCcccceeEEEEEEEeCCCCCCCCccCCCCCce
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS------------------SFSR--PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~------------------~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 82 (333)
+|+|||..++|||||+.+|+... +... ....-|+++....+.+. -+.
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~-------------~~~ 99 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFP-------------YRD 99 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEE-------------ETT
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEE-------------ECC
Confidence 89999999999999999997211 1100 00111222222222221 235
Q ss_pred EEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
+.++|+||||+.+|..-....++-+|++|+|+|+...-.-+....|.. +.+. ++|+|++.||+|
T Consensus 100 ~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~-a~~~---------------~lp~i~fINK~D 163 (548)
T 3vqt_A 100 RVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV-CRMR---------------ATPVMTFVNKMD 163 (548)
T ss_dssp EEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH-HHHT---------------TCCEEEEEECTT
T ss_pred EEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH-HHHh---------------CCceEEEEeccc
Confidence 789999999999999988889999999999999999887777666744 4444 689999999999
Q ss_pred CCCc
Q 019959 163 VAAK 166 (333)
Q Consensus 163 l~~~ 166 (333)
....
T Consensus 164 r~~a 167 (548)
T 3vqt_A 164 REAL 167 (548)
T ss_dssp SCCC
T ss_pred chhc
Confidence 8654
No 201
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.33 E-value=7.7e-12 Score=112.42 Aligned_cols=114 Identities=12% Similarity=-0.011 Sum_probs=67.8
Q ss_pred EEEEEEeCCCchhhhhhHH------hhccCCcEEEEEEECCCcccHHHHHH---HHHHHHhcCCCCCCCCCCCCCCCCCc
Q 019959 83 FFVELWDISGHERYKDCRS------ILYSQINGVIFVHDLSQRRTKTSLQK---WAVEIATSGTFSAPLASGGPGGLPVP 153 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~~~~------~~~~~ad~vIlV~D~s~~~S~~~l~~---~~~~i~~~~~~~~~~~~~~~~~~~~P 153 (333)
+.+.||||+|+..+..... ..+.. +++|+|+|++...+...+.. +....... .++|
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--------------~~~p 173 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--------------LGAT 173 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--------------HTSC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--------------cCCC
Confidence 5699999999876543321 23456 89999999875544333221 11111111 1579
Q ss_pred EEEEeeCcCCCCccCCccCcccHHH---HHHH---------------------HHHHcCCCCCCcCCCccccCCCCCcee
Q 019959 154 YVVIGNKADVAAKEGTRGSSGNLVD---AARQ---------------------WVEKQGLLPSSEELPLTESFPGGGGLI 209 (333)
Q Consensus 154 iivVgNK~Dl~~~~~r~v~~~~~~~---~~~~---------------------~~~~~~~~~~~~~~p~~E~~~~~~~~~ 209 (333)
+++|+||+|+.... .+. ++.+ +... ++++++. .+++++
T Consensus 174 ~~iv~NK~D~~~~~--~~~--~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~--------- 235 (262)
T 1yrb_A 174 TIPALNKVDLLSEE--EKE--RHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP-----PVRVLY--------- 235 (262)
T ss_dssp EEEEECCGGGCCHH--HHH--HHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC-----CCCCEE---------
T ss_pred eEEEEecccccccc--cHH--HHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcC-----cccceE---------
Confidence 99999999997541 110 0001 0001 1233332 135666
Q ss_pred eeeccCcCHHHHHHHHHHHH
Q 019959 210 AAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 210 ~SAk~g~~v~~~~~~l~~~l 229 (333)
+||++|.|++++++.+.+.+
T Consensus 236 ~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 236 LSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EEecCcccHHHHHHHHHHHh
Confidence 99999999999998887665
No 202
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.33 E-value=5.1e-12 Score=119.26 Aligned_cols=109 Identities=11% Similarity=0.061 Sum_probs=61.5
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+.+.|+||+|..... ......+|++++|+|++.....+.+.. .+ ...|.++|+||+
T Consensus 166 ~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----------------l~~~~ivVlNK~ 222 (349)
T 2www_A 166 GYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKR---GI-----------------IEMADLVAVTKS 222 (349)
T ss_dssp TCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC--------------------------------CCSCSEEEECCC
T ss_pred CCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----------------HhcCCEEEEeee
Confidence 3568999999953211 234678999999999987643322211 11 146789999999
Q ss_pred CCCCccCCccCcccHHHHHHHHHHHcCCCCC---CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 162 DVAAKEGTRGSSGNLVDAARQWVEKQGLLPS---SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 162 Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~---~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
|+..... . ......+...+..... ....+++. +||++|.|++++++.+.+.+
T Consensus 223 Dl~~~~~--~-----~~~~~~l~~~l~~~~~~a~~~~~~vi~---------iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 223 DGDLIVP--A-----RRIQAEYVSALKLLRKRSQVWKPKVIR---------ISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp SGGGHHH--H-----HHHHHHHHHHHTTCC-----CCCEEEE---------CCTTTCTTHHHHHHHHHHHH
T ss_pred cCCCchh--H-----HHHHHHHHHHHHhcCccccCCCceEEE---------EecCCCCCHHHHHHHHHHHH
Confidence 9974310 0 0122333332221100 00134555 99999999999998887765
No 203
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.27 E-value=1.8e-11 Score=125.42 Aligned_cols=109 Identities=16% Similarity=0.158 Sum_probs=66.6
Q ss_pred EEEEeCCCchh-------------hhhhHHhhc-cCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 019959 85 VELWDISGHER-------------YKDCRSILY-SQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGL 150 (333)
Q Consensus 85 l~i~Dt~G~e~-------------~~~~~~~~~-~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 150 (333)
+.|+||||... ...+...|+ ..+|++++|+|+++...-.....++..+...
T Consensus 152 L~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~--------------- 216 (772)
T 3zvr_A 152 LTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ--------------- 216 (772)
T ss_dssp EEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTT---------------
T ss_pred eEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhc---------------
Confidence 77999999322 333444444 5789999999998765433333344444333
Q ss_pred CCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 151 PVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 151 ~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+.|+|+|.||+|+...... . ..+.. ...... ....+++. +||++|.|++++++.+.++
T Consensus 217 g~pvIlVlNKiDlv~~~~~--~--------~~il~-~~~~~l~lg~~~VV~---------iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 217 GQRTIGVITKLDLMDEGTD--A--------RDVLE-NKLLPLRRGYIGVVN---------RSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp CSSEEEEEECTTSSCTTCC--S--------HHHHT-TCSSCCSSCEEECCC---------CCCEESSSSEEHHHHHHHH
T ss_pred CCCEEEEEeCcccCCcchh--h--------HHHHH-HHhhhhhccCCceEE---------ecccccccchhHHHHHHHH
Confidence 5899999999999865321 1 11211 111000 00023444 9999999998888877653
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.25 E-value=6.5e-12 Score=118.14 Aligned_cols=110 Identities=12% Similarity=0.006 Sum_probs=63.9
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+.+.||||+|....... ....+|++|+|+|++..+.+..+... . . +.|+++|+||+
T Consensus 148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~~---~--~---------------~~p~ivv~NK~ 204 (341)
T 2p67_A 148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKKG---L--M---------------EVADLIVINKD 204 (341)
T ss_dssp TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCHH---H--H---------------HHCSEEEECCC
T ss_pred CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHHh---h--h---------------cccCEEEEECC
Confidence 356999999996544332 35899999999999765432211111 1 1 35889999999
Q ss_pred CCCCccCCccCcccHHHHHHHHHH---HcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 162 DVAAKEGTRGSSGNLVDAARQWVE---KQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 162 Dl~~~~~r~v~~~~~~~~~~~~~~---~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
|+.... .+ .....++.. .++...-....++++ +||++|.|++++++.+.+.+.
T Consensus 205 Dl~~~~--~~-----~~~~~~l~~~l~~~~~~~~~~~~~vi~---------iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 205 DGDNHT--NV-----AIARHMYESALHILRRKYDEWQPRVLT---------CSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CTTCHH--HH-----HHHHHHHHHHHHHSCCSBTTBCCEEEE---------CBGGGTBSHHHHHHHHHHHHH
T ss_pred CCCChH--HH-----HHHHHHHHHHHHhccccccCCCCcEEE---------eeCCCCCCHHHHHHHHHHHHH
Confidence 997531 11 011122322 222100000134556 999999999999999887653
No 205
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.21 E-value=1.9e-11 Score=123.99 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=80.7
Q ss_pred EEEEECCCCCCHHHHHHHHHc--CCCCC----CCC----------cccceeEEEEEEEeCCCCCCCCccCCCCCceEEEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK--GSSFS----RPS----------QTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVE 86 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~--~~~~~----~~~----------~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 86 (333)
+|+|+|...+|||||+.+|+. +.+.. ... ..-|+++....+.+. -+.+.++
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~-------------~~~~~iN 70 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQ-------------WENTKVN 70 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCB-------------CSSCBCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEE-------------ECCEEEE
Confidence 689999999999999999972 21110 000 001222222222221 3456799
Q ss_pred EEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 87 LWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 87 i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
|.|||||.+|.......++-+|++|+|+|+...-.-+....|.. +.+. ++|+|++.||+|....
T Consensus 71 lIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~-a~~~---------------~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 71 IIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHA-LRKM---------------GIPTIFFINKIDQNGI 134 (638)
T ss_dssp CEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHH-HHHH---------------TCSCEECCEECCSSSC
T ss_pred EEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH-HHHc---------------CCCeEEEEeccccccC
Confidence 99999999999999899999999999999998765555445544 3343 5899999999998654
No 206
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.21 E-value=1.2e-11 Score=114.39 Aligned_cols=110 Identities=19% Similarity=0.088 Sum_probs=83.1
Q ss_pred ceEEEEEEe-CCC-----chhhhhhHHhhccCCcEEEEEEECCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q 019959 81 RDFFVELWD-ISG-----HERYKDCRSILYSQINGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP 153 (333)
Q Consensus 81 ~~~~l~i~D-t~G-----~e~~~~~~~~~~~~ad~vIlV~D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P 153 (333)
..+.+.+|| +.| ++++..+.+.++.++|++|+|||++++. ++..+..|+..+... ++|
T Consensus 48 D~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~---------------~~~ 112 (302)
T 2yv5_A 48 DYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF---------------KVE 112 (302)
T ss_dssp CEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT---------------TCE
T ss_pred eEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC---------------CCC
Confidence 345556665 333 7888888888999999999999999986 899999999987654 689
Q ss_pred EEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 154 YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 154 iivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
+++|+||+||.+.. .+. ..++..++++..| +++++ +||++|.|++++++.+.
T Consensus 113 ~ilV~NK~DL~~~~--~v~---~~~~~~~~~~~~g-------~~~~~---------~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 113 PVIVFNKIDLLNEE--EKK---ELERWISIYRDAG-------YDVLK---------VSAKTGEGIDELVDYLE 164 (302)
T ss_dssp EEEEECCGGGCCHH--HHH---HHHHHHHHHHHTT-------CEEEE---------CCTTTCTTHHHHHHHTT
T ss_pred EEEEEEcccCCCcc--ccH---HHHHHHHHHHHCC-------CeEEE---------EECCCCCCHHHHHhhcc
Confidence 99999999997641 111 0144555566666 35777 99999999998887654
No 207
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.13 E-value=6.4e-11 Score=112.98 Aligned_cols=103 Identities=14% Similarity=0.125 Sum_probs=52.7
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCc----cCCCCCceEEEEEEeCCCc
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNS----IKGDSERDFFVELWDISGH 93 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~----i~~~~~~~~~l~i~Dt~G~ 93 (333)
....++|+|||.+|||||||+|+|++..+.....++.+.+.....+.+++.. -.. ..........+.+|||+|.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r--~~~l~~~~~p~~~~~~~i~lvDtpGl 96 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDER--FDFLCQYHKPASKIPAFLNVVDIAGL 96 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHH--HHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCcc--ceeeccccCcccccccccEEEECCCc
Confidence 3455799999999999999999999886644444444444444455443100 000 0000001235999999997
Q ss_pred hhhhh-------hHHhhccCCcEEEEEEECCCcccH
Q 019959 94 ERYKD-------CRSILYSQINGVIFVHDLSQRRTK 122 (333)
Q Consensus 94 e~~~~-------~~~~~~~~ad~vIlV~D~s~~~S~ 122 (333)
.++.. ....+++.+|++++|+|+++..++
T Consensus 97 ~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 97 VKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp ----------CCHHHHHHHTSSSEEEEEEC------
T ss_pred ccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 76543 344568899999999999876544
No 208
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.10 E-value=1.6e-09 Score=111.16 Aligned_cols=123 Identities=17% Similarity=0.152 Sum_probs=83.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC--------CC------CCC--CCcccceeEEEEE--EEeCCCCCCCCccCCCCCc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG--------SS------FSR--PSQTIGCTVGVKH--ITYGSSGSSSNSIKGDSER 81 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~--------~~------~~~--~~~t~~~~~~~~~--~~~~~~~~~~~~i~~~~~~ 81 (333)
+.=+|+|||...+|||||+.+|+.. .. ... ....-|+++.... +.+.+.. ....
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~--------~~~~ 83 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSR--------GQYD 83 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTT--------SCSC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCc--------CCCC
Confidence 3347999999999999999999721 11 100 0111133333222 2222100 1134
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+.++|+|||||-+|..-....++-+|++|+|+|+...-.-+....|...... ++|+|++.||+
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----------------~lp~i~~iNKi 147 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----------------GVPRIVYVNKM 147 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----------------TCCEEEEEECS
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----------------CCCeEEEEccc
Confidence 78999999999999999888899999999999999988776666666655443 58999999999
Q ss_pred CCCCc
Q 019959 162 DVAAK 166 (333)
Q Consensus 162 Dl~~~ 166 (333)
|....
T Consensus 148 Dr~~a 152 (709)
T 4fn5_A 148 DRQGA 152 (709)
T ss_dssp SSTTC
T ss_pred cccCc
Confidence 98643
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.01 E-value=1.4e-10 Score=100.72 Aligned_cols=113 Identities=9% Similarity=0.001 Sum_probs=69.1
Q ss_pred CCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc-CCCCccC
Q 019959 90 ISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA-DVAAKEG 168 (333)
Q Consensus 90 t~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~-Dl~~~~~ 168 (333)
..||+.++.+|+.||.++|++|||+|.+|++.++ .+.-+.++....... ....++|++|.+||. |+...
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee-------~~L~gapLLVlANKqqDlp~A-- 178 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPA-------FGSSGRPLLVLSCISQGDVKR-- 178 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTT-------SSCSCSCEEEEEEESSTTSCB--
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcch-------hhhCCCeEEEEeCCCcCccCC--
Confidence 3479999999999999999999999999987654 333333333221100 001378999999995 67543
Q ss_pred CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 169 TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 169 r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.+ +.++++.+++.......-+.. |||++|.|+.+++++|.+.+.
T Consensus 179 --ms-------~~EI~e~L~L~~l~R~W~Iq~---------csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 179 --MP-------CFYLAHELHLNLLNHPWLVQD---------TEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp --CC-------HHHHHHHTTGGGGCSCEEEEE---------EETTTCTTHHHHHHHHTTTTT
T ss_pred --CC-------HHHHHHHcCCcCCCCCEEEEE---------eECCCCcCHHHHHHHHHHHHH
Confidence 22 345566666532211112333 999999999999999986653
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.99 E-value=2.8e-09 Score=101.70 Aligned_cols=99 Identities=13% Similarity=0.160 Sum_probs=60.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCC--CCCccCCCCCc--eEEEEEEeCCC
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGS--SSNSIKGDSER--DFFVELWDISG 92 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~--~~~~i~~~~~~--~~~l~i~Dt~G 92 (333)
.....+|+|||.+|||||||+|+|++... .....++.+.+.....+.+.+..- -.... .... ...+.+||++|
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~--~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAY--KPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHH--CCSEEECEEEEEECTGG
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhc--ccccccCcceEEEeccc
Confidence 34457999999999999999999998765 444444333444344444431000 00000 0001 13589999999
Q ss_pred chh-------hhhhHHhhccCCcEEEEEEECCC
Q 019959 93 HER-------YKDCRSILYSQINGVIFVHDLSQ 118 (333)
Q Consensus 93 ~e~-------~~~~~~~~~~~ad~vIlV~D~s~ 118 (333)
... +.......++.+|++++|+|+.+
T Consensus 95 l~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 322 33334445789999999999874
No 211
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.94 E-value=1.7e-09 Score=101.42 Aligned_cols=110 Identities=14% Similarity=0.061 Sum_probs=61.7
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+.+.|+||+|...-.. .....+|++++|+|.+..+..+.+..++. ..+.++|.||+
T Consensus 147 ~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i~--------------------~~~~ivvlNK~ 203 (337)
T 2qm8_A 147 GFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGIF--------------------ELADMIAVNKA 203 (337)
T ss_dssp TCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTHH--------------------HHCSEEEEECC
T ss_pred CCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHHh--------------------ccccEEEEEch
Confidence 45689999999643221 23468999999999875433221211111 23567777999
Q ss_pred CCCCccCCccCcccHHHHHHHHHHHcCCCCCC---cCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 162 DVAAKEGTRGSSGNLVDAARQWVEKQGLLPSS---EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 162 Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~---~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
|+.... ..+ ....+.+.....+.... ...+++. +||+++.|++++++.+.+.+
T Consensus 204 Dl~~~~--~~s----~~~~~~l~~a~~l~~~~~~~~~~~vl~---------~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 204 DDGDGE--RRA----SAAASEYRAALHILTPPSATWTPPVVT---------ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp STTCCH--HHH----HHHHHHHHHHHTTBCCSBTTBCCCEEE---------EBTTTTBSHHHHHHHHHHHH
T ss_pred hccCch--hHH----HHHHHHHHHHHHhccccccCCCCCEEE---------EeCCCCCCHHHHHHHHHHHH
Confidence 975421 111 12233343333322100 0123444 99999999999998887754
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.79 E-value=4e-09 Score=95.81 Aligned_cols=109 Identities=7% Similarity=-0.013 Sum_probs=72.3
Q ss_pred CCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHH---HH-hcCCCCCCCCCCCCCCCCCcEEEEeeC-cCCC
Q 019959 90 ISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVE---IA-TSGTFSAPLASGGPGGLPVPYVVIGNK-ADVA 164 (333)
Q Consensus 90 t~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~---i~-~~~~~~~~~~~~~~~~~~~PiivVgNK-~Dl~ 164 (333)
.+||+..+.+++.||.++|++|+|+|.+|++.++ ...-+.+ +. +... ..++|++|.+|| .|+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~-----------l~~apLLVfANKkQDlp 261 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFG-----------SSGRPLLVLSCISQGDV 261 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHH-----------CTTCCEEEEEEESSTTS
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhh-----------cCCCeEEEEeCCccccc
Confidence 4679999999999999999999999999987644 2222221 11 1100 026899999997 5886
Q ss_pred CccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 165 AKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 165 ~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.. .+ +.++++.+++.......-+.. |||++|.|+.++++++.+.+.
T Consensus 262 ~A----ms-------~~EI~e~L~L~~l~r~W~Iq~---------csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 262 KR----MP-------CFYLAHELHLNLLNHPWLVQD---------TEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp CB----CC-------HHHHHHHTTGGGGCSCEEEEE---------EETTTCTTHHHHHHHHHHHSC
T ss_pred CC----CC-------HHHHHHHcCCccCCCcEEEEe---------cccCCCcCHHHHHHHHHHHHH
Confidence 43 22 345566666532211111333 999999999999999987763
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.74 E-value=1.6e-08 Score=95.94 Aligned_cols=102 Identities=15% Similarity=0.075 Sum_probs=73.5
Q ss_pred CchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCcc
Q 019959 92 GHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRG 171 (333)
Q Consensus 92 G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v 171 (333)
..++|..+...+++.+|++|+|+|++++. ..|..++.+... +.|+++|+||+||.+.. +
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-------------~~p~ilV~NK~DL~~~~---~ 113 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-------------NNKVLLVGNKADLIPKS---V 113 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-------------SSCEEEEEECGGGSCTT---S
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-------------CCcEEEEEEChhcCCcc---c
Confidence 46889999999999999999999999853 467777777642 68999999999997542 2
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
....+.+..+.+++..|+.. .++++ +||++|.|++++++.+.+
T Consensus 114 ~~~~~~~~l~~~~~~~g~~~----~~v~~---------iSA~~g~gi~~L~~~l~~ 156 (368)
T 3h2y_A 114 KHDKVKHWMRYSAKQLGLKP----EDVFL---------ISAAKGQGIAELADAIEY 156 (368)
T ss_dssp CHHHHHHHHHHHHHHTTCCC----SEEEE---------CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCc----ccEEE---------EeCCCCcCHHHHHhhhhh
Confidence 22111233333456666421 24566 999999999999988854
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.58 E-value=5.7e-08 Score=92.11 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=70.8
Q ss_pred CCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 91 SGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 91 ~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
..+++|..+...++..++++|+|+|+++..+ .|..++.+... +.|+++|+||+||.+..
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-------------~~piilV~NK~DLl~~~--- 114 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-------------DNPILLVGNKADLLPRS--- 114 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-------------TSCEEEEEECGGGSCTT---
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-------------CCCEEEEEEChhcCCCc---
Confidence 3588999999998899999999999999874 46656655532 68999999999998642
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
+....+.+..+.++++.|+.. .++++ +||++|.|++++++.+.+
T Consensus 115 ~~~~~~~~~l~~~~~~~g~~~----~~v~~---------iSA~~g~gi~~L~~~I~~ 158 (369)
T 3ec1_A 115 VKYPKLLRWMRRMAEELGLCP----VDVCL---------VSAAKGIGMAKVMEAINR 158 (369)
T ss_dssp CCHHHHHHHHHHHHHTTTCCC----SEEEE---------CBTTTTBTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCCc----ccEEE---------EECCCCCCHHHHHHHHHh
Confidence 221111122333345556421 13455 999999999999988864
No 215
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.55 E-value=1.2e-07 Score=93.22 Aligned_cols=115 Identities=19% Similarity=0.075 Sum_probs=61.8
Q ss_pred eEEEEEEeCCCchhhh-hh---HHhh--ccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcE-
Q 019959 82 DFFVELWDISGHERYK-DC---RSIL--YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY- 154 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~-~~---~~~~--~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pi- 154 (333)
.+.+.|+||+|..... .+ ...+ +..+|.+++|+|++....... ....+... +|+
T Consensus 183 ~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~~----------------~~i~ 243 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKDK----------------VDVA 243 (504)
T ss_dssp TCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHHH----------------HCCC
T ss_pred CCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHhh----------------cCce
Confidence 4568999999954211 11 1111 237899999999987643221 22222221 464
Q ss_pred EEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCC----CCcCCCccccCCCCCceeeeeccCcC-HHHHHHHHHH
Q 019959 155 VVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLP----SSEELPLTESFPGGGGLIAAAKEARY-DKEAVMKFFR 227 (333)
Q Consensus 155 ivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~----~~~~~p~~E~~~~~~~~~~SAk~g~~-v~~~~~~l~~ 227 (333)
++|.||+|..... ..+..+...++... ..+.+.-++ +-.+.+.+|+..|.| ++++++.+.+
T Consensus 244 gvVlNK~D~~~~~----------g~~l~~~~~~g~PI~fig~ge~~~dl~--~f~~~~~vsal~G~Gdi~~Lie~i~e 309 (504)
T 2j37_W 244 SVIVTKLDGHAKG----------GGALSAVAATKSPIIFIGTGEHIDDFE--PFKTQPFISKLLGMGDIEGLIDKVNE 309 (504)
T ss_dssp CEEEECTTSCCCC----------THHHHHHHHHCCCEEEEECSSSTTCEE--CCTHHHHHHCCCTTTTTTTTHHHHTT
T ss_pred EEEEeCCccccch----------HHHHHHHHHhCCCeEEeccccchhhhh--ccCcceeeehhcCCCcHHHHHHHHHH
Confidence 7889999987542 22333444554310 000011111 111233489999988 7777766643
No 216
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.50 E-value=9.3e-09 Score=97.56 Aligned_cols=127 Identities=19% Similarity=0.182 Sum_probs=73.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC------CCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG------SSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
.+|+++|.+|||||||+|+|++. .......+ |.+.....+.++ .. +.++||||...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~-------------~~---~~liDtPG~~~ 224 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLE-------------SG---ATLYDTPGIIN 224 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECS-------------TT---CEEEECCSCCC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeC-------------CC---eEEEeCCCcCc
Confidence 47999999999999999999975 22111122 223333344443 11 78999999422
Q ss_pred hhh--------hHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC
Q 019959 96 YKD--------CRSILY--SQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 165 (333)
Q Consensus 96 ~~~--------~~~~~~--~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~ 165 (333)
... ....++ ...+.++++++..+...+..+.. +..+. ..+.|++++.||+|..+
T Consensus 225 ~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l~---------------~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 225 HHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-LDYIK---------------GGRRSFVCYMANELTVH 288 (369)
T ss_dssp CSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE---------------SSSEEEEEEECTTSCEE
T ss_pred HHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE-EEEcc---------------CCCceEEEEecCCcccc
Confidence 111 111112 67899999999843311111110 11111 12689999999999876
Q ss_pred ccCCccCcccHHHHHHHHHHHcCC
Q 019959 166 KEGTRGSSGNLVDAARQWVEKQGL 189 (333)
Q Consensus 166 ~~~r~v~~~~~~~~~~~~~~~~~~ 189 (333)
... . ......+.+.+|.
T Consensus 289 ~~~--~-----~~~~~~~~~~~g~ 305 (369)
T 3ec1_A 289 RTK--L-----EKADSLYANQLGE 305 (369)
T ss_dssp EEE--G-----GGHHHHHHHHBTT
T ss_pred ccc--H-----HHHHHHHHHhcCC
Confidence 532 1 1445556666774
No 217
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.41 E-value=1.4e-06 Score=83.81 Aligned_cols=25 Identities=28% Similarity=0.658 Sum_probs=22.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSS 46 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~ 46 (333)
++|+|||++|+|||||++.|++..+
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCccc
Confidence 5799999999999999999998754
No 218
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.35 E-value=7.6e-08 Score=91.23 Aligned_cols=129 Identities=20% Similarity=0.224 Sum_probs=71.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-----CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSF-----SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
.+|+++|.+|||||||+|+|++.... .......+.+.....+.+. +. +.++||||....
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-------------~~---~~liDtPG~~~~ 224 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-------------EE---SSLYDTPGIINH 224 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-------------SS---CEEEECCCBCCT
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-------------CC---eEEEeCCCcCcH
Confidence 47999999999999999999975211 1111122333333344432 11 789999994221
Q ss_pred hh--------hHHhh--ccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 97 KD--------CRSIL--YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 97 ~~--------~~~~~--~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
.. ....+ ....+.+++++|......+..+.. +..+. +.+.|+++|.||+|..+.
T Consensus 225 ~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~---------------~~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 225 HQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVS---------------GGRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp TSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE---------------SSSEEEEEEECTTSCEEE
T ss_pred HHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE-EEEec---------------CCCceEEEEecCcccccc
Confidence 11 11111 357888899988743211111100 11111 126899999999998865
Q ss_pred cCCccCcccHHHHHHHHHHHcCC
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGL 189 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~ 189 (333)
.. +......+.+.+|.
T Consensus 289 ~~-------~~~~~~~~~~~~g~ 304 (368)
T 3h2y_A 289 TK-------LEKADELYKNHAGD 304 (368)
T ss_dssp EE-------HHHHHHHHHHHBTT
T ss_pred cc-------HHHHHHHHHHHhCC
Confidence 21 12445556666774
No 219
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.34 E-value=7.4e-07 Score=81.30 Aligned_cols=100 Identities=16% Similarity=0.093 Sum_probs=65.7
Q ss_pred EEeCCCch-hhhhhHHhhccCCcEEEEEEECCCcccHH--HHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC
Q 019959 87 LWDISGHE-RYKDCRSILYSQINGVIFVHDLSQRRTKT--SLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163 (333)
Q Consensus 87 i~Dt~G~e-~~~~~~~~~~~~ad~vIlV~D~s~~~S~~--~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl 163 (333)
|-..||+. .........+..+|+||+|+|+.++.+.. .+..|+ . +.|+++|+||+||
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~-------------~kp~ilVlNK~DL 62 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------K-------------NKPRIMLLNKADK 62 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------S-------------SSCEEEEEECGGG
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------C-------------CCCEEEEEECccc
Confidence 44567764 34444555688999999999999988764 344443 1 5799999999999
Q ss_pred CCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 164 AAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 164 ~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.+. +..+.|.+.+.-. ++++++ +||+++.|++++++.+.+.+.
T Consensus 63 ~~~-----------~~~~~~~~~~~~~----g~~~i~---------iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 63 ADA-----------AVTQQWKEHFENQ----GIRSLS---------INSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp SCH-----------HHHHHHHHHHHTT----TCCEEE---------CCTTTCTTGGGHHHHHHHHHH
T ss_pred CCH-----------HHHHHHHHHHHhc----CCcEEE---------EECCCcccHHHHHHHHHHHHH
Confidence 864 3344454433110 135666 999999999998887766554
No 220
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.33 E-value=2.5e-06 Score=77.25 Aligned_cols=24 Identities=46% Similarity=0.851 Sum_probs=22.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+|++|+|||||++.+++.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 479999999999999999999864
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.18 E-value=1.8e-05 Score=75.89 Aligned_cols=165 Identities=16% Similarity=0.176 Sum_probs=82.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCccc-ceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh----h
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTI-GCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER----Y 96 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~----~ 96 (333)
..|+|+|++|||||||+|.+++-.......-+. +.+.....+.+. . ...-.+.+||++|... .
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-----------~-~~~~~ltv~D~~g~~~~~~~~ 137 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-----------H-PNIPNVVFWDLPGIGSTNFPP 137 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-----------C-SSCTTEEEEECCCGGGSSCCH
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-----------c-cccCCeeehHhhcccchHHHH
Confidence 379999999999999999999742211111110 111100001111 0 0111378999998421 1
Q ss_pred hhhHH-hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC--c---cCCc
Q 019959 97 KDCRS-ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA--K---EGTR 170 (333)
Q Consensus 97 ~~~~~-~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~--~---~~r~ 170 (333)
..... .-+...+.+++ +|..... -+.+ .+...+... +.|+++|.||.|+.- + ....
T Consensus 138 ~~~L~~~~L~~~~~~~~-lS~G~~~-kqrv-~la~aL~~~---------------~~p~~lV~tkpdlllLDEPtsgLD~ 199 (413)
T 1tq4_A 138 DTYLEKMKFYEYDFFII-ISATRFK-KNDI-DIAKAISMM---------------KKEFYFVRTKVDSDITNEADGEPQT 199 (413)
T ss_dssp HHHHHHTTGGGCSEEEE-EESSCCC-HHHH-HHHHHHHHT---------------TCEEEEEECCHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCCccCCeEE-eCCCCcc-HHHH-HHHHHHHhc---------------CCCeEEEEecCcccccCcccccCCH
Confidence 11111 12334566555 7775311 2222 122333333 579999999999741 1 0011
Q ss_pred cCcccHHHHHHHHHH----HcCCCCCCcCCCccccCCCCCceeeee--ccCcCHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVE----KQGLLPSSEELPLTESFPGGGGLIAAA--KEARYDKEAVMKFFRML 229 (333)
Q Consensus 171 v~~~~~~~~~~~~~~----~~~~~~~~~~~p~~E~~~~~~~~~~SA--k~g~~v~~~~~~l~~~l 229 (333)
....++.+..++++. +.|.. ....+- +|+ ..+.|++++.+.+.+.+
T Consensus 200 ~~~~~l~~~l~~l~~~~l~~~g~~----~~~iil---------iSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 200 FDKEKVLQDIRLNCVNTFRENGIA----EPPIFL---------LSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCS----SCCEEE---------CCTTCTTSTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC----CCcEEE---------EecCcCCccCHHHHHHHHHHhC
Confidence 222233344555542 22311 011222 788 67777888888777654
No 222
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.11 E-value=1.5e-06 Score=78.48 Aligned_cols=56 Identities=27% Similarity=0.367 Sum_probs=35.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
++|+|+|.+|||||||+|+|++..... ...+.|.+.....+.++ ..+.||||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~----------------~~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLE----------------NGVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT----------------TSCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeC----------------CCEEEEECCCcc
Confidence 699999999999999999999776532 23333444333333332 138899999954
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.10 E-value=2.9e-06 Score=77.40 Aligned_cols=27 Identities=33% Similarity=0.635 Sum_probs=24.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
...++|+|+|.+|||||||+|+|++..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCc
Confidence 456899999999999999999999765
No 224
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.85 E-value=1.2e-05 Score=77.51 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+||||||+++.|..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 225
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.81 E-value=5.1e-05 Score=75.83 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=24.6
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSS 46 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~ 46 (333)
...++|+|+|.+|||||||+|+|++...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCC
Confidence 4567899999999999999999998753
No 226
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.76 E-value=4e-06 Score=81.80 Aligned_cols=102 Identities=16% Similarity=0.068 Sum_probs=62.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh--h
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER--Y 96 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~--~ 96 (333)
...++|+++|.+|+||||+.++|...-.. ....+.++.......... +......+||..|.+. +
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~-------------g~~~~~~ifd~~g~~~~r~ 102 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMV-------------KTYKSFEFFLPDNEEGLKI 102 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHH-------------CSCCCGGGGCTTCHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhc-------------cCCCcccccCCCCHHHHHH
Confidence 44579999999999999999999754210 011111111000000000 1112356899999733 2
Q ss_pred hhhH--------HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhc
Q 019959 97 KDCR--------SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATS 135 (333)
Q Consensus 97 ~~~~--------~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~ 135 (333)
...+ ..++..+++.++|+|.++. +++....|+..+...
T Consensus 103 re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 103 RKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 3322 4456677898999999998 677778888877765
No 227
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.69 E-value=0.00011 Score=70.85 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
...|+++|.+||||||++..|.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHH
Confidence 4689999999999999999987
No 228
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.55 E-value=0.00025 Score=71.32 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
.|+|||+.|+|||||++.+++-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999999764
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.46 E-value=6.2e-05 Score=67.71 Aligned_cols=78 Identities=21% Similarity=0.262 Sum_probs=54.0
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHH--HHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTS--LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~--l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
.....+..+|+||+|+|+.++.+..+ +. |+ +.|+++|+||+||.+.
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---------------------~k~~iivlNK~DL~~~---------- 61 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---------------------RKETIILLNKVDIADE---------- 61 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---------------------TSEEEEEEECGGGSCH----------
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---------------------CCCcEEEEECccCCCH----------
Confidence 33455889999999999998876543 22 21 3689999999999864
Q ss_pred HHHHHHHH---HHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 177 VDAARQWV---EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 177 ~~~~~~~~---~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
+..+.|. ++.| +++ . +||+++.|++++++.+.
T Consensus 62 -~~~~~~~~~~~~~g-------~~v-~---------iSa~~~~gi~~L~~~l~ 96 (262)
T 3cnl_A 62 -KTTKKWVEFFKKQG-------KRV-I---------TTHKGEPRKVLLKKLSF 96 (262)
T ss_dssp -HHHHHHHHHHHHTT-------CCE-E---------ECCTTSCHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHcC-------CeE-E---------EECCCCcCHHHHHHHHH
Confidence 2233333 3334 234 4 99999998888776654
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.45 E-value=0.00011 Score=70.68 Aligned_cols=79 Identities=22% Similarity=0.139 Sum_probs=46.3
Q ss_pred eEEEEEEeCCCchh----h---hhhHHh-hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q 019959 82 DFFVELWDISGHER----Y---KDCRSI-LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP 153 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~----~---~~~~~~-~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P 153 (333)
.+.+.|.||+|... . ..+... .....+.+++|.|++....-. .....+.+.. .+
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~~---------------~~ 240 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQAS---------------PI 240 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHHC---------------SS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhccc---------------CC
Confidence 45688999999432 1 111110 122579999999998653322 2333443331 35
Q ss_pred EEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcC
Q 019959 154 YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQG 188 (333)
Q Consensus 154 iivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~ 188 (333)
..||.||.|.... ...+..++...+
T Consensus 241 ~gVIlTKlD~~a~----------~G~als~~~~~g 265 (433)
T 3kl4_A 241 GSVIITKMDGTAK----------GGGALSAVVATG 265 (433)
T ss_dssp EEEEEECGGGCSC----------HHHHHHHHHHHT
T ss_pred cEEEEeccccccc----------chHHHHHHHHHC
Confidence 7789999998754 244555666666
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.34 E-value=0.00014 Score=66.98 Aligned_cols=54 Identities=11% Similarity=0.169 Sum_probs=39.8
Q ss_pred hhHHhhccCCcEEEEEEECCCccc-HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRT-KTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S-~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
.+.+..+.++|.+++|+|+.++.. ...+..++...... ++|.+||.||+||.+.
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~---------------~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN---------------DIQPIICITKMDLIED 132 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT---------------TCEEEEEEECGGGCCC
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC---------------CCCEEEEEECCccCch
Confidence 334446789999999999997654 44456665544333 6889999999999875
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.18 E-value=0.0012 Score=61.99 Aligned_cols=85 Identities=14% Similarity=0.172 Sum_probs=54.9
Q ss_pred hccCCcEEEEEEECCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
...++|.+++|.+.. +. +...+..++...... ++|.+||.||+||.+... .+..+
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~---------------~~~~iivlNK~DL~~~~~--------~~~~~ 182 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCETL---------------QVEPLIVLNKIDLLDDEG--------MDFVN 182 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHH---------------TCEEEEEEECGGGCCHHH--------HHHHH
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhc---------------CCCEEEEEECccCCCchh--------HHHHH
Confidence 367899999987764 54 455566666555444 578899999999986520 02244
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMK 224 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~ 224 (333)
+|...+.-. .++.+. +||+++.|++++...
T Consensus 183 ~~~~~y~~~----G~~v~~---------~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 183 EQMDIYRNI----GYRVLM---------VSSHTQDGLKPLEEA 212 (358)
T ss_dssp HHHHHHHTT----TCCEEE---------CBTTTTBTHHHHHHH
T ss_pred HHHHHHHhC----CCcEEE---------EecCCCcCHHHHHHh
Confidence 555543211 134555 999999998876654
No 233
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.16 E-value=0.00093 Score=61.09 Aligned_cols=78 Identities=19% Similarity=0.089 Sum_probs=46.0
Q ss_pred eEEEEEEeCCCchh--hh-hhHH-----hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q 019959 82 DFFVELWDISGHER--YK-DCRS-----ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP 153 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~--~~-~~~~-----~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P 153 (333)
.+.+.|+||+|... .. .+.. .....+|.+++|.|++... +.......+.. .++
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----------------~~~ 240 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----------------ASK 240 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----------------TCT
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----------------hCC
Confidence 45689999999655 21 1111 1244799999999987532 22122233322 245
Q ss_pred -EEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcC
Q 019959 154 -YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQG 188 (333)
Q Consensus 154 -iivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~ 188 (333)
..+|.||+|.... ...+..++...+
T Consensus 241 i~gvVlnk~D~~~~----------~g~~~~~~~~~~ 266 (297)
T 1j8m_F 241 IGTIIITKMDGTAK----------GGGALSAVAATG 266 (297)
T ss_dssp TEEEEEECGGGCTT----------HHHHHHHHHTTT
T ss_pred CCEEEEeCCCCCcc----------hHHHHHHHHHHC
Confidence 6788999997643 133455666666
No 234
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.04 E-value=0.002 Score=54.58 Aligned_cols=85 Identities=14% Similarity=0.053 Sum_probs=56.7
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+.+.|+|+++.- .......+..+|.+|++...+... ..+...+..+...... ..+.++.+|.|++
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~----------~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAY----------SRKVEARFLITRK 140 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCG----------GGCCEEEEEECSB
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHh----------CCCCcEEEEEecc
Confidence 3568899999864 233334566799999999887654 6677777777665321 1356789999999
Q ss_pred CCCCccCCccCcccHHHHHHHHHHHcCC
Q 019959 162 DVAAKEGTRGSSGNLVDAARQWVEKQGL 189 (333)
Q Consensus 162 Dl~~~~~r~v~~~~~~~~~~~~~~~~~~ 189 (333)
|.... . ..++.++.+.++.
T Consensus 141 ~~~~~----~-----~~~~~~~l~~~~~ 159 (206)
T 4dzz_A 141 IEMAT----M-----LNVLKESIKDTGV 159 (206)
T ss_dssp CTTEE----E-----EHHHHHHHHHHTC
T ss_pred CCCch----H-----HHHHHHHHHHcCC
Confidence 95432 1 1456666666764
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.61 E-value=0.0053 Score=59.24 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.9
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHc
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
.+..-|+|+|.+++|||+|+|+|++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 3456799999999999999999985
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.42 E-value=0.0017 Score=54.70 Aligned_cols=22 Identities=45% Similarity=0.892 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+++|+|++|+|||||++.+++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999854
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.35 E-value=0.0018 Score=54.25 Aligned_cols=22 Identities=23% Similarity=0.614 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999863
No 238
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.26 E-value=0.0021 Score=54.83 Aligned_cols=21 Identities=33% Similarity=0.661 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.++|+|++|||||||++.+++
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999985
No 239
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.16 E-value=0.0033 Score=53.93 Aligned_cols=25 Identities=28% Similarity=0.683 Sum_probs=21.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
..--|+|+|++|||||||+++|+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3346899999999999999999854
No 240
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.01 E-value=0.0033 Score=52.90 Aligned_cols=21 Identities=29% Similarity=0.646 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+|+|++|||||||++.|++.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999854
No 241
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.95 E-value=0.0036 Score=53.61 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|||||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 242
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.95 E-value=0.0036 Score=52.97 Aligned_cols=22 Identities=45% Similarity=0.643 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|+|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 243
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.91 E-value=0.0038 Score=54.34 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|||||||++.+++.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999864
No 244
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.90 E-value=0.0039 Score=54.05 Aligned_cols=22 Identities=32% Similarity=0.675 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|||||||++.+++.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
No 245
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.90 E-value=0.0024 Score=58.60 Aligned_cols=22 Identities=45% Similarity=0.682 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|||||||+|.+.+.
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHhccc
Confidence 7999999999999999999865
No 246
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.89 E-value=0.0043 Score=52.65 Aligned_cols=21 Identities=29% Similarity=0.646 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+|+|++|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999854
No 247
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=95.82 E-value=0.05 Score=48.08 Aligned_cols=65 Identities=12% Similarity=0.008 Sum_probs=46.3
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+.+.|+|+++.-. ......+..+|.+|+|...+ ..+...+...+..+.... .+.++.+|.|+.
T Consensus 144 ~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~~-------------~~~~~~vv~N~~ 207 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKLN-------------LFLPIFLIITRF 207 (267)
T ss_dssp TCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTTT-------------CCCCEEEEEEEE
T ss_pred CCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHHh-------------ccCCEEEEEecc
Confidence 46688999988542 23334566799999999885 456677777777776653 256788999999
Q ss_pred C
Q 019959 162 D 162 (333)
Q Consensus 162 D 162 (333)
+
T Consensus 208 ~ 208 (267)
T 3k9g_A 208 K 208 (267)
T ss_dssp C
T ss_pred c
Confidence 4
No 248
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.78 E-value=0.0041 Score=51.64 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
-++|+|++|+|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 58999999999999999865
No 249
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.74 E-value=0.0048 Score=51.67 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|++|+|||||++.+.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999865
No 250
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.73 E-value=0.0051 Score=52.76 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|+|++|||||||++.|...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999865
No 251
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.69 E-value=0.017 Score=55.42 Aligned_cols=22 Identities=36% Similarity=0.447 Sum_probs=19.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
...|+|+|.+||||||++..|.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3578889999999999999987
No 252
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.67 E-value=0.0057 Score=50.42 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
.++|+|+.|+|||||++.+++.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 68999999999999999998653
No 253
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.66 E-value=0.0068 Score=51.86 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
...|+|+|++|+|||||++.+.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998753
No 254
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.55 E-value=0.006 Score=53.63 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999854
No 255
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.51 E-value=0.0075 Score=56.50 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
.++|+|++|||||||+|.|++..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 68999999999999999999754
No 256
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.37 E-value=0.0087 Score=50.97 Aligned_cols=22 Identities=36% Similarity=0.673 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|+|++|||||||+++|...
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999753
No 257
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.36 E-value=0.0087 Score=52.81 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999865
No 258
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.33 E-value=0.0085 Score=50.65 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
.|+|+|++|||||||++.|.+.-
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 69999999999999999998653
No 259
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.32 E-value=0.0072 Score=52.70 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 260
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.29 E-value=0.0091 Score=49.99 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-++|+|++|+|||||++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 261
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.27 E-value=0.0096 Score=48.90 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|.+|+|||||.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999753
No 262
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.26 E-value=0.0087 Score=53.51 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|+.|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999865
No 263
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.25 E-value=0.0085 Score=50.87 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+|+|+|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999853
No 264
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.25 E-value=0.0091 Score=51.78 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999865
No 265
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.22 E-value=0.0098 Score=52.32 Aligned_cols=22 Identities=41% Similarity=0.641 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999854
No 266
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.21 E-value=0.0091 Score=53.85 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 267
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.21 E-value=0.01 Score=52.39 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
No 268
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.19 E-value=0.01 Score=52.58 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
No 269
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.18 E-value=0.22 Score=42.39 Aligned_cols=67 Identities=7% Similarity=-0.044 Sum_probs=46.6
Q ss_pred eEEEEEEeCCCc-hhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 82 DFFVELWDISGH-ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 82 ~~~l~i~Dt~G~-e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
.+.+.|.|+++. ... .....+..+|.+|++...+ ..+...+...+..+.... +.++.+|.|+
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--------------~~~~~vv~N~ 129 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--------------NNRFRILLTI 129 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--------------SSSEEEEECS
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--------------CCCEEEEEEe
Confidence 456889999886 332 2234567899999999875 345666666777776642 3568899999
Q ss_pred cCCCC
Q 019959 161 ADVAA 165 (333)
Q Consensus 161 ~Dl~~ 165 (333)
.|...
T Consensus 130 ~~~~~ 134 (209)
T 3cwq_A 130 IPPYP 134 (209)
T ss_dssp BCCTT
T ss_pred cCCcc
Confidence 98654
No 270
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.16 E-value=0.012 Score=47.96 Aligned_cols=20 Identities=30% Similarity=0.622 Sum_probs=18.6
Q ss_pred eEEEEECCCCCCHHHHHHHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLI 41 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l 41 (333)
.-|+|+|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 271
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.16 E-value=0.01 Score=53.07 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|++|+|||||++.+++
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 699999999999999999985
No 272
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.16 E-value=0.0095 Score=53.05 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999865
No 273
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.16 E-value=0.011 Score=48.25 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|.+||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 274
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.15 E-value=0.0097 Score=53.35 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999865
No 275
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.15 E-value=0.012 Score=51.67 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~ 42 (333)
-.|+|+|++|||||||++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999998
No 276
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.14 E-value=0.011 Score=50.23 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|.+|+|||||++.|.+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999975
No 277
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.13 E-value=0.011 Score=51.66 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999865
No 278
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.10 E-value=0.011 Score=52.30 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 279
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.10 E-value=0.012 Score=49.73 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|.+|+|||||.+.|...
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999743
No 280
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.09 E-value=0.012 Score=52.82 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999875
No 281
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.08 E-value=0.011 Score=50.43 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
..|+|+|+.|+|||||++.+.+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
No 282
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.08 E-value=0.011 Score=53.04 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5899999999999999999865
No 283
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.08 E-value=0.011 Score=52.19 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999865
No 284
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.05 E-value=0.012 Score=53.95 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 7999999999999999999854
No 285
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.04 E-value=0.011 Score=52.46 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999865
No 286
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.04 E-value=0.01 Score=54.12 Aligned_cols=23 Identities=48% Similarity=0.572 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
.++|+|++|||||||+|.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 68999999999999999998653
No 287
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.03 E-value=0.01 Score=49.32 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||+|++.+.+.
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
No 288
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.02 E-value=0.036 Score=46.59 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHc
Q 019959 24 VLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~ 43 (333)
++|.|++|+|||+|++.+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999874
No 289
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.02 E-value=0.012 Score=49.19 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|.+|+|||||+++++..
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 6899999999999999999854
No 290
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.02 E-value=0.012 Score=53.71 Aligned_cols=20 Identities=35% Similarity=0.667 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
.++|+|++|||||||+|.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 291
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.01 E-value=0.012 Score=52.50 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999864
No 292
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.01 E-value=0.011 Score=52.60 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999865
No 293
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.01 E-value=0.013 Score=51.03 Aligned_cols=20 Identities=35% Similarity=0.699 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
-++|+|++|+|||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 58899999999999999887
No 294
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.99 E-value=0.014 Score=48.07 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999986
No 295
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.98 E-value=0.01 Score=51.18 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 296
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.97 E-value=0.013 Score=52.96 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999865
No 297
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.95 E-value=0.013 Score=52.67 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999865
No 298
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.93 E-value=0.02 Score=47.07 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
-.|+|+|.+|+|||||++.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999999874
No 299
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.91 E-value=0.015 Score=49.66 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
++|+|+|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999963
No 300
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.89 E-value=0.009 Score=51.88 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=15.0
Q ss_pred EEEEECCCCCCHHHHHHHHH-cC
Q 019959 23 RVLVVGDSGVGKTSLVNLIV-KG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~-~~ 44 (333)
-|+|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998 54
No 301
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.88 E-value=0.02 Score=48.41 Aligned_cols=27 Identities=30% Similarity=0.569 Sum_probs=22.7
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHc
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
.+...+.|+|+|.+|+||||+.+.|..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344556899999999999999999874
No 302
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.86 E-value=0.013 Score=52.09 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999865
No 303
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.86 E-value=0.012 Score=50.45 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|+|||||++.+++.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 304
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.84 E-value=0.016 Score=49.52 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
++|+|+|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999964
No 305
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.84 E-value=0.017 Score=48.57 Aligned_cols=21 Identities=29% Similarity=0.601 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999974
No 306
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.83 E-value=0.013 Score=52.39 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999865
No 307
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.80 E-value=0.0073 Score=50.46 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|++|+|||||++.+++-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999854
No 308
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.77 E-value=0.018 Score=48.77 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|.+||||||+.+.|..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999974
No 309
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.74 E-value=0.015 Score=49.18 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
.+|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999986
No 310
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.74 E-value=0.014 Score=54.66 Aligned_cols=24 Identities=29% Similarity=0.417 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.-+++|+|++|+|||||++.|.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 311
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.73 E-value=0.017 Score=49.59 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+|+||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 312
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.73 E-value=0.016 Score=51.82 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999865
No 313
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.72 E-value=0.018 Score=47.48 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-|+|+|.+||||||+.+.|..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999985
No 314
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.67 E-value=0.0087 Score=50.79 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|+|.+|+|||||.+.+.+.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998743
No 315
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.67 E-value=0.016 Score=53.19 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.1
Q ss_pred cceEEEEECCCCCCHHHHHHHHHc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
...-|+|+|++|+|||||++.+.+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 345799999999999999999875
No 316
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.66 E-value=0.011 Score=54.10 Aligned_cols=22 Identities=32% Similarity=0.644 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||||++.+++-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6999999999999999998754
No 317
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.56 E-value=0.02 Score=47.49 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 318
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.48 E-value=0.023 Score=47.13 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 319
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.47 E-value=0.025 Score=47.95 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
+.|+|+|.+|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 320
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.46 E-value=0.021 Score=46.86 Aligned_cols=22 Identities=32% Similarity=0.673 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|.|++|+|||+|++.+...
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998743
No 321
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.41 E-value=0.018 Score=53.88 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|||||||++.+.+-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 5899999999999999999875
No 322
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.39 E-value=0.015 Score=47.27 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 323
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.37 E-value=0.019 Score=52.17 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999864
No 324
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.36 E-value=0.022 Score=53.31 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|||||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999865
No 325
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.33 E-value=0.028 Score=46.57 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 326
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.33 E-value=0.18 Score=48.49 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=19.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHH
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
...=|+|+|..++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 45567799999999999999554
No 327
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.30 E-value=0.023 Score=53.31 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|+|||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 5899999999999999999865
No 328
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.28 E-value=0.023 Score=53.24 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 5899999999999999999865
No 329
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.28 E-value=0.023 Score=53.22 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 5899999999999999999865
No 330
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.27 E-value=0.027 Score=46.67 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|.+||||||+.+.|..
T Consensus 7 ~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999964
No 331
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.26 E-value=0.023 Score=49.88 Aligned_cols=21 Identities=48% Similarity=0.722 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+|+|++|+|||+|++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999864
No 332
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.26 E-value=0.022 Score=52.02 Aligned_cols=21 Identities=48% Similarity=0.670 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|++|||||||++.+.+
T Consensus 104 vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 789999999999999999973
No 333
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.26 E-value=0.022 Score=53.31 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|++|+|||||++.+++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999974
No 334
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.25 E-value=0.033 Score=47.23 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
...|+|+|.+|+|||||++.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999864
No 335
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.24 E-value=0.024 Score=53.50 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|||||||++.+.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 5899999999999999999865
No 336
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.21 E-value=0.024 Score=48.48 Aligned_cols=22 Identities=23% Similarity=0.569 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
++|+|+|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999974
No 337
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.21 E-value=0.035 Score=46.31 Aligned_cols=24 Identities=33% Similarity=0.697 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
...|+|+|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999754
No 338
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.20 E-value=0.024 Score=53.31 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 5899999999999999999865
No 339
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.16 E-value=0.036 Score=50.26 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=20.8
Q ss_pred cceEEEEECCCCCCHHHHHHHHHc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
....|+|+|.+|+|||||++.|..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998863
No 340
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.16 E-value=0.025 Score=53.16 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|||||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 5899999999999999999865
No 341
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.15 E-value=0.035 Score=46.19 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 342
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.11 E-value=0.022 Score=53.25 Aligned_cols=22 Identities=32% Similarity=0.711 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|++|+|||||++.+++-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999864
No 343
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.09 E-value=0.03 Score=48.08 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+.|+|+|+|||||+|+..+|...
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999743
No 344
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.08 E-value=0.026 Score=50.67 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+|+|++|+|||+|++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999864
No 345
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.08 E-value=0.034 Score=48.77 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|+.|+|||||++.|.+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 346
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.05 E-value=0.035 Score=46.87 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 347
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.98 E-value=0.028 Score=51.33 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
--|+|+|+.|||||||+..+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999974
No 348
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.97 E-value=0.033 Score=45.30 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
+|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999974
No 349
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.96 E-value=0.028 Score=46.53 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-.+|+|+.|+|||||+.++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999864
No 350
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.94 E-value=0.017 Score=49.36 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
.-|+|+|.+|+||||+.+.|..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 351
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.93 E-value=0.039 Score=46.80 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
....|+|+|.+|+|||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999874
No 352
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.91 E-value=0.032 Score=47.71 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-++|+|++|+|||||+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999984
No 353
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.91 E-value=0.037 Score=46.45 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
....|+|+|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3468999999999999999999864
No 354
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.90 E-value=0.03 Score=52.63 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|++|+|||||++.+++
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999999985
No 355
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.89 E-value=0.034 Score=46.29 Aligned_cols=21 Identities=38% Similarity=0.343 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|.+|+|||||+.+++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999984
No 356
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.87 E-value=0.022 Score=53.17 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|+|||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 5899999999999999999865
No 357
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.85 E-value=0.036 Score=47.52 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999874
No 358
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.85 E-value=0.041 Score=45.65 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 359
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.85 E-value=0.03 Score=51.72 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
--|+|+|++|||||||++.+.+
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 360
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.84 E-value=0.034 Score=45.95 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+|+||||+.+.|..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 3689999999999999999973
No 361
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.84 E-value=0.043 Score=49.54 Aligned_cols=24 Identities=38% Similarity=0.518 Sum_probs=21.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
...-|+|+|.+|||||||..+|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999974
No 362
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.83 E-value=0.048 Score=45.93 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=20.8
Q ss_pred cceEEEEECCCCCCHHHHHHHHHc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
....|+|+|.+||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 335799999999999999999974
No 363
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.78 E-value=0.032 Score=45.96 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
+|+|+|.+|+||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999999874
No 364
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.78 E-value=0.024 Score=52.36 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||||++.+++-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999865
No 365
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.78 E-value=0.033 Score=48.06 Aligned_cols=22 Identities=27% Similarity=0.595 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999973
No 366
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.77 E-value=0.043 Score=48.16 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHHc
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
.++|+|+|.+||||||+..+|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999974
No 367
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.76 E-value=0.039 Score=46.36 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
..|+|+|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999854
No 368
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.74 E-value=0.033 Score=49.71 Aligned_cols=21 Identities=48% Similarity=0.722 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+|+|++|+|||+|++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999864
No 369
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.73 E-value=0.03 Score=53.05 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5899999999999999999864
No 370
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.73 E-value=0.041 Score=48.44 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHc
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
...+.|+|.|.+|+||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3447899999999999999999875
No 371
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.71 E-value=0.039 Score=47.62 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 372
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.70 E-value=0.014 Score=49.52 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-|+|+|.+|+|||||++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 373
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.69 E-value=0.04 Score=48.65 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~ 42 (333)
..|+|+|++|+|||||++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 374
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.64 E-value=0.043 Score=50.02 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHHc
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
...|+|+|++|+|||||++.|.+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999985
No 375
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.64 E-value=0.049 Score=50.16 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHc
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
...+-|+|+|++|||||||++.|..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998864
No 376
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.62 E-value=0.028 Score=46.07 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|.|++|+|||+|++.+...
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988743
No 377
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.59 E-value=0.026 Score=49.02 Aligned_cols=24 Identities=38% Similarity=0.511 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-.-|+|+|..|+|||||++.+.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 347999999999999999998764
No 378
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.58 E-value=0.044 Score=45.74 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 379
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.58 E-value=0.037 Score=48.93 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-|+|+|++|+|||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999974
No 380
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.57 E-value=0.057 Score=44.88 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+|+||||+.+.+..
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 381
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.53 E-value=0.035 Score=53.04 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|+|++|+|||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999853
No 382
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.52 E-value=0.049 Score=46.05 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|.|.+||||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999974
No 383
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.52 E-value=0.037 Score=51.01 Aligned_cols=22 Identities=41% Similarity=0.756 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999864
No 384
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.49 E-value=0.021 Score=53.31 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|+|||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999865
No 385
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.48 E-value=0.046 Score=45.38 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 386
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.39 E-value=0.043 Score=47.08 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
+.|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999864
No 387
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.38 E-value=0.042 Score=47.07 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.++|.|++|+|||+|++.+..
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999874
No 388
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.32 E-value=0.048 Score=45.43 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 389
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.30 E-value=0.04 Score=51.26 Aligned_cols=22 Identities=41% Similarity=0.797 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+++|+|+.|+|||||++.+++.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999976
No 390
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.29 E-value=0.047 Score=46.34 Aligned_cols=21 Identities=29% Similarity=0.150 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-++|+|++|+|||||+..++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 391
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=93.27 E-value=0.053 Score=50.78 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=21.4
Q ss_pred CcceEEEEECCCCCCHHHHHHHHH
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
.+.+||+|+|.+|+|||||+.++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 456899999999999999999874
No 392
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.25 E-value=0.046 Score=46.01 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-.|+|.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998753
No 393
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.24 E-value=0.043 Score=51.33 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
--|+|+|+.|||||||+..+.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 3689999999999999999974
No 394
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.24 E-value=0.048 Score=47.03 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|+|||||+..++..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999864
No 395
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.23 E-value=0.053 Score=43.91 Aligned_cols=20 Identities=40% Similarity=0.762 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
-.+|+|+.|+|||||+.++.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35899999999999999986
No 396
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.23 E-value=0.039 Score=49.70 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|+|||||+..+++.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4889999999999999998854
No 397
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.23 E-value=0.042 Score=47.15 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999873
No 398
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.21 E-value=0.048 Score=45.54 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+|+||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999974
No 399
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.14 E-value=0.048 Score=47.90 Aligned_cols=22 Identities=45% Similarity=0.613 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|++|+|||+|++.+.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5999999999999999999753
No 400
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.14 E-value=0.04 Score=54.08 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|++|+|||||++.+++-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4999999999999999999864
No 401
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.12 E-value=0.052 Score=44.27 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 402
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.10 E-value=0.052 Score=44.84 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+|+||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 403
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.06 E-value=0.053 Score=48.06 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999999874
No 404
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.06 E-value=0.047 Score=53.22 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
--|+|+|.+|||||||++.|.+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 4689999999999999999874
No 405
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.06 E-value=0.054 Score=45.85 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|.|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 406
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.03 E-value=0.041 Score=53.22 Aligned_cols=22 Identities=45% Similarity=0.602 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6999999999999999999853
No 407
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.00 E-value=0.066 Score=46.42 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+|+||||+.+.|..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999974
No 408
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.99 E-value=0.052 Score=46.09 Aligned_cols=21 Identities=48% Similarity=0.724 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 409
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.94 E-value=0.067 Score=45.68 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
+.|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 410
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.90 E-value=0.075 Score=43.94 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999874
No 411
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.89 E-value=0.043 Score=45.25 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=15.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999973
No 412
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.83 E-value=0.039 Score=50.58 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|..|+|||||++.+++.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999965
No 413
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.73 E-value=0.058 Score=47.52 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=21.5
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
....|+|+|.+|+||||+.+.|...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999753
No 414
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.71 E-value=0.066 Score=44.30 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|.+|+||||+...|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999864
No 415
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.66 E-value=0.055 Score=51.99 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+++|+|++|+|||||++.+.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7999999999999999999875
No 416
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.63 E-value=0.065 Score=52.86 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
No 417
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=92.58 E-value=0.064 Score=50.18 Aligned_cols=19 Identities=42% Similarity=0.651 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHH
Q 019959 24 VLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~ 42 (333)
++|+|+.|+|||||++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6699999999999999987
No 418
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.54 E-value=0.066 Score=46.61 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.-.-|+|.|.+||||||++++|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999753
No 419
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.54 E-value=0.061 Score=52.31 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.++|+|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999999974
No 420
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.53 E-value=0.064 Score=53.35 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||||++.+++-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
No 421
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.44 E-value=0.081 Score=46.37 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.6
Q ss_pred ceEEEEECCCCCCHHHHHHHHHc
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
.+.|+|.|++|+|||||.+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999873
No 422
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.44 E-value=0.075 Score=46.04 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+|+|+|||||+|+..+|...
T Consensus 32 I~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999743
No 423
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.44 E-value=0.057 Score=53.74 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+++|+|++|+|||||++.+++-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6999999999999999999864
No 424
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.36 E-value=0.07 Score=47.27 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|.+|+||||+.+.|..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999964
No 425
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.19 E-value=0.074 Score=47.28 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|.|++|+|||+|++.+...
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5999999999999999999754
No 426
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.15 E-value=0.079 Score=46.29 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-|+|.|++|+|||+|++.+..
T Consensus 41 ~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 427
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.08 E-value=0.087 Score=42.09 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|.|++|+|||+|.+.+...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 5999999999999999999754
No 428
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.08 E-value=0.092 Score=47.14 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHH
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
...+.|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999997
No 429
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.04 E-value=0.077 Score=47.50 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|.|++|+|||+|++.+.+.
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 7999999999999999999864
No 430
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.92 E-value=0.059 Score=53.79 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||||++.+++-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 431
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.92 E-value=0.11 Score=47.72 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHc
Q 019959 24 VLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~ 43 (333)
++|.|++|+|||||++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999876
No 432
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.91 E-value=0.076 Score=52.40 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|+.|+|||||++.+.+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5889999999999999999864
No 433
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.86 E-value=0.12 Score=46.47 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
...|+|.|++|+|||+|++.+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999998665
No 434
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.81 E-value=0.084 Score=49.68 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|++|+|||||++.+.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999999985
No 435
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.78 E-value=0.097 Score=44.82 Aligned_cols=23 Identities=43% Similarity=0.667 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
..|+|+|++|+|||+|...|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999855
No 436
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.78 E-value=0.088 Score=52.74 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5899999999999999999864
No 437
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.77 E-value=0.085 Score=48.00 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-++|.|++|+|||+|++.+.+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999999975
No 438
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.77 E-value=0.065 Score=53.52 Aligned_cols=22 Identities=45% Similarity=0.800 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||||++.+++-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 7999999999999999999854
No 439
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.75 E-value=0.086 Score=45.46 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-++|+|++|+|||+|+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999888863
No 440
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.72 E-value=0.079 Score=48.79 Aligned_cols=21 Identities=29% Similarity=0.706 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-|+|.|++|+|||+|++.+.+
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999985
No 441
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.71 E-value=0.084 Score=47.08 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-++|+|++|+|||||+..++.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999884
No 442
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.71 E-value=0.096 Score=47.01 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+|+||||+.++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999985
No 443
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.61 E-value=0.12 Score=42.14 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 444
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.46 E-value=0.097 Score=47.32 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|.|++|+|||+|++.+.+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 6999999999999999999854
No 445
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.45 E-value=0.088 Score=47.78 Aligned_cols=20 Identities=25% Similarity=0.586 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
.|+|+|.+||||||++..|.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999986
No 446
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.43 E-value=0.15 Score=44.41 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=20.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHH
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
..+++|++.|.+|||||+++-.+.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHH
Confidence 456899999999999999976664
No 447
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.40 E-value=0.11 Score=51.21 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999975
No 448
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.40 E-value=0.06 Score=53.57 Aligned_cols=22 Identities=50% Similarity=0.637 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999988754
No 449
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.36 E-value=0.12 Score=44.06 Aligned_cols=20 Identities=40% Similarity=0.762 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
-.+|+|+.|+|||||+.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 46789999999999999885
No 450
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.35 E-value=0.1 Score=47.31 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|.|+.|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 6899999999999999999854
No 451
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.33 E-value=0.1 Score=48.22 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|.|++|+|||+|++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999854
No 452
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.29 E-value=1.4 Score=39.52 Aligned_cols=82 Identities=10% Similarity=0.193 Sum_probs=52.7
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEE-EEeeC
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYV-VIGNK 160 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pii-vVgNK 160 (333)
.+.+.|+|+++.-..... ...+..+|.+|+|...+ ..+...+...+..+..... ..+++++ +|.|+
T Consensus 156 ~yD~ViiD~p~~~~~~~~-~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~-----------~~~~~~~gvV~N~ 222 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSK-----------NYKVRLAGCVANR 222 (307)
T ss_dssp SCSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTT-----------TCCCEEEEEEEES
T ss_pred cCCEEEEeCCCccchHHH-HHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhh-----------cCCCceEEEEEec
Confidence 467889999874332221 23467899999998764 4466777777777765421 1356655 89999
Q ss_pred cCCCCccCCccCcccHHHHHHHHHHHcCC
Q 019959 161 ADVAAKEGTRGSSGNLVDAARQWVEKQGL 189 (333)
Q Consensus 161 ~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~ 189 (333)
++-. +.++++.+.++.
T Consensus 223 ~~~~-------------~~~~~~~~~~g~ 238 (307)
T 3end_A 223 SRAT-------------DEVDRFCKETNF 238 (307)
T ss_dssp CSCC-------------HHHHHHHHHHTC
T ss_pred CCcH-------------HHHHHHHHHcCC
Confidence 9832 335566666664
No 453
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.27 E-value=0.1 Score=52.21 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 6899999999999999999864
No 454
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.27 E-value=0.072 Score=53.09 Aligned_cols=22 Identities=45% Similarity=0.732 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999988754
No 455
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.25 E-value=0.096 Score=47.27 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.-|+|.|++|+|||+|++.+...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36778899999999999999854
No 456
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.24 E-value=0.11 Score=46.46 Aligned_cols=22 Identities=36% Similarity=0.678 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|.|++|+|||+|++.+...
T Consensus 52 ~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 457
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.23 E-value=0.13 Score=43.46 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=21.9
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++.|+|.|..|+||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999753
No 458
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.21 E-value=0.1 Score=51.56 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 459
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.10 E-value=0.13 Score=47.70 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|+|++|||||+|...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999854
No 460
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.05 E-value=0.12 Score=47.34 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|+|++|||||+|...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 5889999999999999999854
No 461
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.03 E-value=0.12 Score=45.78 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-.|+|.|++|+|||+|+..+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 47999999999999999999864
No 462
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.94 E-value=0.15 Score=44.24 Aligned_cols=23 Identities=22% Similarity=0.562 Sum_probs=20.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHHc
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
...|+|+|.+|+||||+.+.|..
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999874
No 463
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.91 E-value=0.11 Score=47.35 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|.|++|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999854
No 464
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.89 E-value=0.13 Score=51.45 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999975
No 465
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.86 E-value=0.13 Score=47.04 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-|+|+|.+|+||||++..+..
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHH
Confidence 588999999999999998873
No 466
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.78 E-value=0.1 Score=44.98 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=19.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
-.++|.|++|+|||+++.++.+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999888874
No 467
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.72 E-value=0.14 Score=47.17 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|++|||||||...|..
T Consensus 7 ~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999974
No 468
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.72 E-value=0.2 Score=44.93 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
--++|+|++|+|||+|++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999998753
No 469
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.60 E-value=0.14 Score=47.43 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3689999999999999999874
No 470
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.53 E-value=0.15 Score=46.69 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|+|++|||||+|...+...
T Consensus 12 ~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5889999999999999999743
No 471
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=90.52 E-value=0.026 Score=49.34 Aligned_cols=21 Identities=24% Similarity=0.484 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
++|+|++|+|||||++.+++-
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 578999999999999999854
No 472
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.44 E-value=0.16 Score=42.50 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 473
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.44 E-value=0.11 Score=45.97 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=21.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+...|+|.|..||||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999988743
No 474
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.42 E-value=0.14 Score=51.18 Aligned_cols=21 Identities=33% Similarity=0.819 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
++|+|+.|+|||||++.+.+-
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhcC
Confidence 799999999999999999865
No 475
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.40 E-value=0.14 Score=48.77 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
.-|+|+|.+|+|||||.++|..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999975
No 476
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.35 E-value=0.14 Score=46.96 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
++|.|++|+|||||++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999854
No 477
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.34 E-value=0.13 Score=47.70 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-+.|+|++|+|||||++.++..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999865
No 478
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=90.32 E-value=0.12 Score=47.53 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|.|++|+|||+|++.+...
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999743
No 479
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.19 E-value=0.15 Score=46.68 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|.|++|+|||+|++.+...
T Consensus 47 ~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHH
Confidence 7999999999999999999864
No 480
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.16 E-value=0.15 Score=46.50 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
++|.|++|+|||+|++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998753
No 481
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=89.97 E-value=0.081 Score=46.61 Aligned_cols=20 Identities=45% Similarity=0.692 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHc
Q 019959 24 VLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~ 43 (333)
|+|.|++|+|||+|++.+..
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 88999999999999999985
No 482
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.95 E-value=0.18 Score=53.15 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSS 46 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~ 46 (333)
.++|+|+.|+|||||++.+.++.+
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999997654
No 483
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.94 E-value=0.16 Score=46.16 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
-.++|.|++|+|||+|+..+..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 484
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=89.82 E-value=0.087 Score=42.01 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|.|++|+|||+|.+.+...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 5999999999999999888643
No 485
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=89.69 E-value=0.19 Score=46.34 Aligned_cols=19 Identities=42% Similarity=0.844 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHH
Q 019959 24 VLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~ 42 (333)
.+|+|+.|+|||||+.+++
T Consensus 26 ~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999875
No 486
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=89.68 E-value=0.17 Score=46.03 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|.|++|+|||+|++.+...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 487
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.68 E-value=0.3 Score=44.46 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-.|+|.|++|+|||+|++.+...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 37999999999999999999754
No 488
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=89.68 E-value=1.5 Score=39.37 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
+++-|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455566999999999999754
No 489
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.67 E-value=0.1 Score=57.02 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+|+|||++|+|||||++.|++-
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 8999999999999999999743
No 490
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=89.66 E-value=0.18 Score=44.26 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|.|++|+|||+|++.+...
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHT
T ss_pred CEEEECCCCCcHHHHHHHHHHh
Confidence 6999999999999999999864
No 491
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.60 E-value=0.16 Score=48.08 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
-++|+|++|+|||||+..|+
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 58999999999999999886
No 492
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=89.59 E-value=0.17 Score=48.84 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||+|++.+...
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998743
No 493
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.58 E-value=0.22 Score=43.48 Aligned_cols=24 Identities=29% Similarity=0.635 Sum_probs=20.4
Q ss_pred cceEEEEECCCCCCHHHHHHHHHc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
.++++.|+|.+||||||+..+|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 357999999999999999999874
No 494
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.56 E-value=0.16 Score=46.83 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|.|++|+|||+|++.+...
T Consensus 72 ~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999743
No 495
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.56 E-value=0.16 Score=49.78 Aligned_cols=19 Identities=42% Similarity=0.552 Sum_probs=0.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q 019959 24 VLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~ 42 (333)
++|+|++|+|||||++.|+
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 496
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=89.49 E-value=0.18 Score=48.38 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-++|.|++|+|||+|++.+.+
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 497
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.46 E-value=0.17 Score=46.83 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-|+|.|++|+|||+|++.+..
T Consensus 47 ~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999975
No 498
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.22 E-value=0.15 Score=46.53 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
-.+|+|+.|+|||+|+..+.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 57899999999999999997
No 499
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.21 E-value=0.2 Score=47.91 Aligned_cols=22 Identities=41% Similarity=0.641 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|++.|+||+|||+|++++.+.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999854
No 500
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.21 E-value=0.2 Score=41.87 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|.|++|+|||||.-.|...
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 5899999999999999999864
Done!