BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019960
         (333 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1AM9|A Chain A, Human Srebp-1a Bound To Ldl Receptor Promoter
 pdb|1AM9|B Chain B, Human Srebp-1a Bound To Ldl Receptor Promoter
 pdb|1AM9|C Chain C, Human Srebp-1a Bound To Ldl Receptor Promoter
 pdb|1AM9|D Chain D, Human Srebp-1a Bound To Ldl Receptor Promoter
          Length = 82

 Score = 37.4 bits (85), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 36/55 (65%)

Query: 46  RSKHSVTEQRRRSKINERFQILREIIPHSDQKRDTASFLLEVIEYVQYLQEKVQK 100
           R+ H+  E+R RS IN++   L++++  ++ K + ++ L + I+Y+++LQ   QK
Sbjct: 7   RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61


>pdb|1R05|A Chain A, Solution Structure Of Max B-Hlh-Lz
 pdb|1R05|B Chain B, Solution Structure Of Max B-Hlh-Lz
          Length = 87

 Score = 37.0 bits (84), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 46 RSKHSVTEQRRRSKINERFQILREIIPH-SDQKRDTASFLLEVIEYVQYLQEKVQ 99
          R+ H+  E++RR  I + F  LR+ +P    +K   A  L +  EY+QY++ KV 
Sbjct: 5  RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKVH 59


>pdb|1NKP|B Chain B, Crystal Structure Of Myc-Max Recognizing Dna
 pdb|1NKP|E Chain E, Crystal Structure Of Myc-Max Recognizing Dna
          Length = 83

 Score = 35.0 bits (79), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 46 RSKHSVTEQRRRSKINERFQILREIIPH-SDQKRDTASFLLEVIEYVQYLQEK 97
          R+ H+  E++RR  I + F  LR+ +P    +K   A  L +  EY+QY++ K
Sbjct: 3  RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 55


>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna
          Complex: New Insights Into Mechanisms Of
          Transcriptional Control
 pdb|1HLO|B Chain B, The Crystal Structure Of An Intact Human Max-Dna
          Complex: New Insights Into Mechanisms Of
          Transcriptional Control
          Length = 80

 Score = 35.0 bits (79), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 46 RSKHSVTEQRRRSKINERFQILREIIPH-SDQKRDTASFLLEVIEYVQYLQEK 97
          R+ H+  E++RR  I + F  LR+ +P    +K   A  L +  EY+QY++ K
Sbjct: 13 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 65


>pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna Through A Dimeric
          BHLHZ DOMAIN
          Length = 86

 Score = 34.3 bits (77), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 46 RSKHSVTEQRRRSKINERFQILREIIPH-SDQKRDTASFLLEVIEYVQYLQEK 97
          R+ H+  E++RR  I + F  LR+ +P    +K   A  L +  EY+QY++ K
Sbjct: 4  RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 56


>pdb|1NLW|B Chain B, Crystal Structure Of Mad-Max Recognizing Dna
 pdb|1NLW|E Chain E, Crystal Structure Of Mad-Max Recognizing Dna
          Length = 76

 Score = 33.9 bits (76), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 46 RSKHSVTEQRRRSKINERFQILREIIPH-SDQKRDTASFLLEVIEYVQYLQEK 97
          R+ H+  E++RR  I + F  LR+ +P    +K   A  L +  EY+QY++ K
Sbjct: 2  RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 54


>pdb|4ATI|A Chain A, Mitf:m-Box Complex
 pdb|4ATI|B Chain B, Mitf:m-Box Complex
 pdb|4ATK|A Chain A, Mitf:e-Box Complex
 pdb|4ATK|B Chain B, Mitf:e-Box Complex
          Length = 118

 Score = 33.1 bits (74), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 49  HSVTEQRRRSKINERFQILREIIPHS---DQKRDTASFLLEVIEYVQYLQEKVQK 100
           H++ E+RRR  IN+R + L  +IP S   D + +  + L   ++Y++ LQ + Q+
Sbjct: 31  HNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQR 85


>pdb|3M8U|A Chain A, Crystal Structure Of Glutathione-Binding Protein A (Gbpa)
           From Haemophilus Parasuis Sh0165 In Complex With
           Glutathione Disulfide (Gssg)
          Length = 522

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 29/52 (55%)

Query: 16  DEFMSKKEAASNITNSNAKDGKNSDKASVIRSKHSVTEQRRRSKINERFQIL 67
           D F+S    + N+ NSN    KN +  +++     ++++  R+KI E+ Q+L
Sbjct: 415 DNFLSPLFGSENVGNSNYARFKNPELDALLHKAVGLSDKAERAKIYEQAQVL 466


>pdb|1UKL|C Chain C, Crystal Structure Of Importin-Beta And Srebp-2 Complex
 pdb|1UKL|D Chain D, Crystal Structure Of Importin-Beta And Srebp-2 Complex
 pdb|1UKL|E Chain E, Crystal Structure Of Importin-Beta And Srebp-2 Complex
 pdb|1UKL|F Chain F, Crystal Structure Of Importin-Beta And Srebp-2 Complex
          Length = 61

 Score = 30.4 bits (67), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 26/40 (65%)

Query: 57 RSKINERFQILREIIPHSDQKRDTASFLLEVIEYVQYLQE 96
          RS IN++   L++++  +D K   +  L + I+Y++YLQ+
Sbjct: 1  RSSINDKIIELKDLVXGTDAKXHKSGVLRKAIDYIKYLQQ 40


>pdb|1NKP|A Chain A, Crystal Structure Of Myc-Max Recognizing Dna
 pdb|1NKP|D Chain D, Crystal Structure Of Myc-Max Recognizing Dna
          Length = 88

 Score = 28.9 bits (63), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 43  SVIRSKHSVTEQRRRSKINERFQILREIIP--HSDQKRDTASFLLEVIEYVQYLQEKVQK 100
           +V R  H+V E++RR+++   F  LR+ IP   +++K      L +   Y+  +Q + QK
Sbjct: 4   NVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQK 63


>pdb|1AN4|A Chain A, Structure And Function Of The BHLHZ DOMAIN OF USF
 pdb|1AN4|B Chain B, Structure And Function Of The BHLHZ DOMAIN OF USF
          Length = 65

 Score = 28.5 bits (62), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 46 RSKHSVTEQRRRSKINERFQILREIIPHSDQK-----RDTASFLLEVIEYVQYLQE 96
          R++H+  E+RRR KIN     L +IIP S  +     +     L +  +Y+Q L++
Sbjct: 6  RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQ 61


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.125    0.348 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,502,485
Number of Sequences: 62578
Number of extensions: 377900
Number of successful extensions: 736
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 714
Number of HSP's gapped (non-prelim): 22
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.6 bits)