Query 019960
Match_columns 333
No_of_seqs 202 out of 1115
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 09:40:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019960.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019960hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 1.5E-17 5E-22 131.4 5.1 68 43-110 4-71 (82)
2 4ati_A MITF, microphthalmia-as 99.6 1.7E-16 5.8E-21 133.3 7.3 71 35-105 17-90 (118)
3 4h10_B Circadian locomoter out 99.6 1.5E-16 5.1E-21 123.3 5.0 63 41-103 4-66 (71)
4 1hlo_A Protein (transcription 99.6 5E-16 1.7E-20 121.7 4.7 69 42-110 9-78 (80)
5 1nkp_B MAX protein, MYC proto- 99.6 3.7E-16 1.3E-20 123.0 3.6 69 45-113 2-71 (83)
6 1an4_A Protein (upstream stimu 99.6 4.7E-16 1.6E-20 117.2 3.5 56 43-98 3-63 (65)
7 1a0a_A BHLH, protein (phosphat 99.6 5.9E-16 2E-20 117.1 3.0 54 45-98 2-61 (63)
8 1nkp_A C-MYC, MYC proto-oncoge 99.6 1.2E-15 4.1E-20 122.1 3.6 70 43-112 4-75 (88)
9 4h10_A ARYL hydrocarbon recept 99.5 1.8E-15 6.3E-20 117.6 1.7 56 41-96 5-63 (73)
10 3u5v_A Protein MAX, transcript 99.5 1.1E-14 3.7E-19 114.0 3.4 60 44-103 4-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.5 2.5E-14 8.5E-19 112.8 4.5 67 46-112 2-70 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.3 1.5E-12 5E-17 100.0 4.5 57 42-98 9-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.3 3.7E-12 1.3E-16 95.4 4.8 55 45-99 2-58 (60)
14 4f3l_A Mclock, circadian locom 99.1 1.1E-10 3.9E-15 111.5 5.8 57 41-97 8-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 5.6E-10 1.9E-14 108.1 4.2 56 41-96 9-67 (387)
16 2lfh_A DNA-binding protein inh 98.8 9.8E-10 3.4E-14 84.4 1.5 48 49-96 18-67 (68)
17 4ath_A MITF, microphthalmia-as 98.8 1E-08 3.6E-13 81.5 6.1 49 56-104 3-54 (83)
18 4aya_A DNA-binding protein inh 98.4 3.8E-07 1.3E-11 74.4 6.6 50 53-102 33-84 (97)
19 3muj_A Transcription factor CO 60.3 10 0.00034 32.6 4.6 37 58-94 94-133 (138)
20 3lap_A Arginine repressor; arg 42.1 5.2 0.00018 35.1 -0.1 22 261-282 39-60 (170)
21 2wt7_A Proto-oncogene protein 38.8 23 0.00078 25.8 3.0 42 53-108 1-42 (63)
22 1b4a_A Arginine repressor; hel 37.1 8.4 0.00029 32.9 0.5 28 259-286 22-50 (149)
23 1pd7_B MAD1; PAH2, SIN3, eukar 33.0 47 0.0016 20.8 3.2 20 77-96 1-20 (26)
24 1p3q_Q VPS9P, vacuolar protein 32.4 61 0.0021 23.4 4.3 24 51-74 3-26 (54)
25 3v4g_A Arginine repressor; vib 31.4 9.7 0.00033 33.8 -0.1 22 261-282 52-74 (180)
26 1gd2_E Transcription factor PA 30.0 13 0.00045 28.2 0.5 17 89-105 29-45 (70)
27 2er8_A Regulatory protein Leu3 29.9 35 0.0012 24.4 2.8 22 88-109 48-69 (72)
28 3fx7_A Putative uncharacterize 28.3 48 0.0016 26.6 3.5 40 58-106 48-87 (94)
29 1dh3_A Transcription factor CR 21.6 24 0.00081 25.3 0.5 24 89-112 22-45 (55)
30 3he4_B Synzip5; heterodimeric 20.8 99 0.0034 21.2 3.4 23 84-106 5-27 (46)
31 1hwt_C Protein (heme activator 20.5 55 0.0019 23.8 2.3 21 88-108 57-77 (81)
32 1zme_C Proline utilization tra 20.1 50 0.0017 23.3 2.0 21 88-108 43-63 (70)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.69 E-value=1.5e-17 Score=131.44 Aligned_cols=68 Identities=25% Similarity=0.443 Sum_probs=62.8
Q ss_pred ccccccCchHHHHHHHHHHHHHHHHhccCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHhhhccccc
Q 019960 43 SVIRSKHSVTEQRRRSKINERFQILREIIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEVSYQDWSA 110 (333)
Q Consensus 43 ~~rr~~H~~~ERrRR~rINe~f~~LrsLVP~~~~K~DKasIL~~AIeYIk~Lq~~v~~Le~~~~~l~~ 110 (333)
..+|.+|+++||+||++||++|.+|++|||+++.|+||++||.+||+||++||.+++.|+.+...+..
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~ 71 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT 71 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999998789999999999999999999999999988766543
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.65 E-value=1.7e-16 Score=133.30 Aligned_cols=71 Identities=27% Similarity=0.459 Sum_probs=53.0
Q ss_pred CCCCCcccccccccCchHHHHHHHHHHHHHHHHhccCCCC---CCCCChhhhhHHHHHHHHHHHHHHHHHHhhh
Q 019960 35 DGKNSDKASVIRSKHSVTEQRRRSKINERFQILREIIPHS---DQKRDTASFLLEVIEYVQYLQEKVQKYEVSY 105 (333)
Q Consensus 35 ~g~~~~k~~~rr~~H~~~ERrRR~rINe~f~~LrsLVP~~---~~K~DKasIL~~AIeYIk~Lq~~v~~Le~~~ 105 (333)
+.+...+...+|.+|+++||+||++||++|.+|++|||.+ +.|++|++||..||+||++||.+++.|+...
T Consensus 17 ~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 17 EARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333446777899999999999999999999999999987 3589999999999999999999999998653
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.63 E-value=1.5e-16 Score=123.29 Aligned_cols=63 Identities=22% Similarity=0.352 Sum_probs=58.1
Q ss_pred ccccccccCchHHHHHHHHHHHHHHHHhccCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHh
Q 019960 41 KASVIRSKHSVTEQRRRSKINERFQILREIIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEV 103 (333)
Q Consensus 41 k~~~rr~~H~~~ERrRR~rINe~f~~LrsLVP~~~~K~DKasIL~~AIeYIk~Lq~~v~~Le~ 103 (333)
+...+|.+|+++||+||++||++|.+|+.|||.+..|+||++||..||+||++||.++.-|+.
T Consensus 4 k~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~~ 66 (71)
T 4h10_B 4 KDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLEH 66 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 456789999999999999999999999999998767999999999999999999999887763
No 4
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.60 E-value=5e-16 Score=121.71 Aligned_cols=69 Identities=28% Similarity=0.489 Sum_probs=62.9
Q ss_pred cccccccCchHHHHHHHHHHHHHHHHhccCCCC-CCCCChhhhhHHHHHHHHHHHHHHHHHHhhhccccc
Q 019960 42 ASVIRSKHSVTEQRRRSKINERFQILREIIPHS-DQKRDTASFLLEVIEYVQYLQEKVQKYEVSYQDWSA 110 (333)
Q Consensus 42 ~~~rr~~H~~~ERrRR~rINe~f~~LrsLVP~~-~~K~DKasIL~~AIeYIk~Lq~~v~~Le~~~~~l~~ 110 (333)
...+|..|+..||+||.+||++|..|+.+||.+ ..|++|++||..||+||++|+.+++.|+.+.+.+..
T Consensus 9 ~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 9 DADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345789999999999999999999999999986 469999999999999999999999999998876653
No 5
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.59 E-value=3.7e-16 Score=122.96 Aligned_cols=69 Identities=28% Similarity=0.506 Sum_probs=62.5
Q ss_pred ccccCchHHHHHHHHHHHHHHHHhccCCCC-CCCCChhhhhHHHHHHHHHHHHHHHHHHhhhcccccCcc
Q 019960 45 IRSKHSVTEQRRRSKINERFQILREIIPHS-DQKRDTASFLLEVIEYVQYLQEKVQKYEVSYQDWSAEPT 113 (333)
Q Consensus 45 rr~~H~~~ERrRR~rINe~f~~LrsLVP~~-~~K~DKasIL~~AIeYIk~Lq~~v~~Le~~~~~l~~e~~ 113 (333)
+|..|+..||+||.+||++|..|+++||.+ ..|++|++||..||+||++|+.+++.|+.+.+.+..+..
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~ 71 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNA 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999985 579999999999999999999999999988777765543
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.59 E-value=4.7e-16 Score=117.20 Aligned_cols=56 Identities=32% Similarity=0.494 Sum_probs=51.3
Q ss_pred ccccccCchHHHHHHHHHHHHHHHHhccCCCCC-----CCCChhhhhHHHHHHHHHHHHHH
Q 019960 43 SVIRSKHSVTEQRRRSKINERFQILREIIPHSD-----QKRDTASFLLEVIEYVQYLQEKV 98 (333)
Q Consensus 43 ~~rr~~H~~~ERrRR~rINe~f~~LrsLVP~~~-----~K~DKasIL~~AIeYIk~Lq~~v 98 (333)
..+|..|+++||+||++||++|.+|+.|||.+. .|++|++||..||+||++||.++
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999883 37899999999999999999764
No 7
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.57 E-value=5.9e-16 Score=117.06 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=49.5
Q ss_pred ccccCchHHHHHHHHHHHHHHHHhccCCCC------CCCCChhhhhHHHHHHHHHHHHHH
Q 019960 45 IRSKHSVTEQRRRSKINERFQILREIIPHS------DQKRDTASFLLEVIEYVQYLQEKV 98 (333)
Q Consensus 45 rr~~H~~~ERrRR~rINe~f~~LrsLVP~~------~~K~DKasIL~~AIeYIk~Lq~~v 98 (333)
+|.+|+++||+||++||.+|.+|+.|||.+ ..+++||+||+.||+||++||+++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999965 357889999999999999999765
No 8
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.56 E-value=1.2e-15 Score=122.15 Aligned_cols=70 Identities=26% Similarity=0.360 Sum_probs=61.3
Q ss_pred ccccccCchHHHHHHHHHHHHHHHHhccCCCC--CCCCChhhhhHHHHHHHHHHHHHHHHHHhhhcccccCc
Q 019960 43 SVIRSKHSVTEQRRRSKINERFQILREIIPHS--DQKRDTASFLLEVIEYVQYLQEKVQKYEVSYQDWSAEP 112 (333)
Q Consensus 43 ~~rr~~H~~~ERrRR~rINe~f~~LrsLVP~~--~~K~DKasIL~~AIeYIk~Lq~~v~~Le~~~~~l~~e~ 112 (333)
..+|..|++.||+||.+||++|..|+.+||.+ ..|++|++||.+||+||++|+.+.+.+....+.+..+.
T Consensus 4 ~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n 75 (88)
T 1nkp_A 4 NVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRR 75 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999999999999999999986 36999999999999999999999998877665554443
No 9
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.52 E-value=1.8e-15 Score=117.61 Aligned_cols=56 Identities=27% Similarity=0.409 Sum_probs=51.5
Q ss_pred ccccccccCchHHHHHHHHHHHHHHHHhccCCCC---CCCCChhhhhHHHHHHHHHHHH
Q 019960 41 KASVIRSKHSVTEQRRRSKINERFQILREIIPHS---DQKRDTASFLLEVIEYVQYLQE 96 (333)
Q Consensus 41 k~~~rr~~H~~~ERrRR~rINe~f~~LrsLVP~~---~~K~DKasIL~~AIeYIk~Lq~ 96 (333)
+...+|.+|+++||+||++||+.|.+|+.|||.| ..|+||++||+.||+||+.|+.
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 4567899999999999999999999999999976 3799999999999999999974
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.48 E-value=1.1e-14 Score=113.99 Aligned_cols=60 Identities=23% Similarity=0.376 Sum_probs=49.7
Q ss_pred cccccCchHHHHHHHHHHHHHHHHhccCCCC--CCCC-ChhhhhHHHHHHHHHHHHHHHHHHh
Q 019960 44 VIRSKHSVTEQRRRSKINERFQILREIIPHS--DQKR-DTASFLLEVIEYVQYLQEKVQKYEV 103 (333)
Q Consensus 44 ~rr~~H~~~ERrRR~rINe~f~~LrsLVP~~--~~K~-DKasIL~~AIeYIk~Lq~~v~~Le~ 103 (333)
.+|..|++.||+||..||++|.+|+.+||.+ ..|. +|+.||..||+||++||+++++++.
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999953 2354 7999999999999999999998774
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.47 E-value=2.5e-14 Score=112.78 Aligned_cols=67 Identities=21% Similarity=0.321 Sum_probs=59.9
Q ss_pred cccCchHHHHHHHHHHHHHHHHhccCCCC--CCCCChhhhhHHHHHHHHHHHHHHHHHHhhhcccccCc
Q 019960 46 RSKHSVTEQRRRSKINERFQILREIIPHS--DQKRDTASFLLEVIEYVQYLQEKVQKYEVSYQDWSAEP 112 (333)
Q Consensus 46 r~~H~~~ERrRR~rINe~f~~LrsLVP~~--~~K~DKasIL~~AIeYIk~Lq~~v~~Le~~~~~l~~e~ 112 (333)
|..|+..||+||..||++|..|+++||.+ ..|.+|+.||..||+||+.|+.+.+.|..+.+.+..+.
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~ 70 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQ 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999965 47999999999999999999999999988877665443
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.30 E-value=1.5e-12 Score=99.96 Aligned_cols=57 Identities=28% Similarity=0.421 Sum_probs=52.1
Q ss_pred cccccccCchHHHHHHHHHHHHHHHHhccCCCC-CCCCChhhhhHHHHHHHHHHHHHH
Q 019960 42 ASVIRSKHSVTEQRRRSKINERFQILREIIPHS-DQKRDTASFLLEVIEYVQYLQEKV 98 (333)
Q Consensus 42 ~~~rr~~H~~~ERrRR~rINe~f~~LrsLVP~~-~~K~DKasIL~~AIeYIk~Lq~~v 98 (333)
...+|..|+..||+|+..||+.|..||.+||.. +.|++|+.||..||+||.+|++.+
T Consensus 9 ~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 9 NADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 445788899999999999999999999999975 579999999999999999999764
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.26 E-value=3.7e-12 Score=95.43 Aligned_cols=55 Identities=25% Similarity=0.318 Sum_probs=50.5
Q ss_pred ccccCchHHHHHHHHHHHHHHHHhccCCCC--CCCCChhhhhHHHHHHHHHHHHHHH
Q 019960 45 IRSKHSVTEQRRRSKINERFQILREIIPHS--DQKRDTASFLLEVIEYVQYLQEKVQ 99 (333)
Q Consensus 45 rr~~H~~~ERrRR~rINe~f~~LrsLVP~~--~~K~DKasIL~~AIeYIk~Lq~~v~ 99 (333)
+|..|+..||+|+..||+.|..||.+||.. +.|++|+.||..||+||.+|++.++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 577899999999999999999999999975 5799999999999999999998653
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.05 E-value=1.1e-10 Score=111.47 Aligned_cols=57 Identities=23% Similarity=0.413 Sum_probs=43.2
Q ss_pred ccccccccCchHHHHHHHHHHHHHHHHhccCCCCCCCCChhhhhHHHHHHHHHHHHH
Q 019960 41 KASVIRSKHSVTEQRRRSKINERFQILREIIPHSDQKRDTASFLLEVIEYVQYLQEK 97 (333)
Q Consensus 41 k~~~rr~~H~~~ERrRR~rINe~f~~LrsLVP~~~~K~DKasIL~~AIeYIk~Lq~~ 97 (333)
+...+|..|+.+||+||++||+.|.+|+.|||....|+||++||..||+||+.|+..
T Consensus 8 ~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 8 KDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 566789999999999999999999999999995568999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.90 E-value=5.6e-10 Score=108.06 Aligned_cols=56 Identities=27% Similarity=0.409 Sum_probs=49.9
Q ss_pred ccccccccCchHHHHHHHHHHHHHHHHhccCCCC---CCCCChhhhhHHHHHHHHHHHH
Q 019960 41 KASVIRSKHSVTEQRRRSKINERFQILREIIPHS---DQKRDTASFLLEVIEYVQYLQE 96 (333)
Q Consensus 41 k~~~rr~~H~~~ERrRR~rINe~f~~LrsLVP~~---~~K~DKasIL~~AIeYIk~Lq~ 96 (333)
+...+|.+|+.+||+||++||+.|.+|+.|||.+ ..|+||++||..||+|||.|+.
T Consensus 9 ~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 9 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred hhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 5567899999999999999999999999999953 4799999999999999999974
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.80 E-value=9.8e-10 Score=84.40 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=43.4
Q ss_pred CchHHHHHHHHHHHHHHHHhccCCCC--CCCCChhhhhHHHHHHHHHHHH
Q 019960 49 HSVTEQRRRSKINERFQILREIIPHS--DQKRDTASFLLEVIEYVQYLQE 96 (333)
Q Consensus 49 H~~~ERrRR~rINe~f~~LrsLVP~~--~~K~DKasIL~~AIeYIk~Lq~ 96 (333)
-+..||+|...||+.|..||.+||.. +.|++|+.||..||+||..||.
T Consensus 18 a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 18 AAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 34568999999999999999999976 6799999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.75 E-value=1e-08 Score=81.46 Aligned_cols=49 Identities=29% Similarity=0.473 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhccCCCC---CCCCChhhhhHHHHHHHHHHHHHHHHHHhh
Q 019960 56 RRSKINERFQILREIIPHS---DQKRDTASFLLEVIEYVQYLQEKVQKYEVS 104 (333)
Q Consensus 56 RR~rINe~f~~LrsLVP~~---~~K~DKasIL~~AIeYIk~Lq~~v~~Le~~ 104 (333)
-|.+||++|.+|..|||.+ +.|++|++||..+|+||++||..++.+...
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~ 54 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 54 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999975 468999999999999999999877765543
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.42 E-value=3.8e-07 Score=74.40 Aligned_cols=50 Identities=22% Similarity=0.344 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCC--CCCCChhhhhHHHHHHHHHHHHHHHHHH
Q 019960 53 EQRRRSKINERFQILREIIPHS--DQKRDTASFLLEVIEYVQYLQEKVQKYE 102 (333)
Q Consensus 53 ERrRR~rINe~f~~LrsLVP~~--~~K~DKasIL~~AIeYIk~Lq~~v~~Le 102 (333)
||.|-..||+.|..||.+||.. ++|++|+.+|..||+||.+|+..++.-.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~ 84 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHL 84 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5778889999999999999975 6899999999999999999998776533
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=60.25 E-value=10 Score=32.57 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhccCCCC---CCCCChhhhhHHHHHHHHHH
Q 019960 58 SKINERFQILREIIPHS---DQKRDTASFLLEVIEYVQYL 94 (333)
Q Consensus 58 ~rINe~f~~LrsLVP~~---~~K~DKasIL~~AIeYIk~L 94 (333)
--|...|+.|..+||.. ..++-|-.||.+|.++++.|
T Consensus 94 PtId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 94 PTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CCHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred CccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 46899999999999965 46888999999999998876
No 20
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=42.14 E-value=5.2 Score=35.06 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=18.7
Q ss_pred HHHHHHHHcCCCCCCCeeEEEE
Q 019960 261 NLTQALESAGIDLSQANISVQI 282 (333)
Q Consensus 261 ~lt~al~~sgvdlsqa~isvqi 282 (333)
-|-++|+..|++++||+||=.|
T Consensus 39 EL~~~L~~~Gi~vTQATlSRDi 60 (170)
T 3lap_A 39 ELAALLAAEGIEVTQATLSRDL 60 (170)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHcCCCcCchhHHHHH
Confidence 5678899999999999999533
No 21
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=38.79 E-value=23 Score=25.80 Aligned_cols=42 Identities=17% Similarity=0.132 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHhhhccc
Q 019960 53 EQRRRSKINERFQILREIIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEVSYQDW 108 (333)
Q Consensus 53 ERrRR~rINe~f~~LrsLVP~~~~K~DKasIL~~AIeYIk~Lq~~v~~Le~~~~~l 108 (333)
||++|.+...++.+.++= ..-.+|+..|+.++..|+..+..|
T Consensus 1 Ekr~rrrerNR~AA~rcR--------------~rKk~~~~~Le~~v~~L~~~n~~L 42 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCR--------------NRRRELTDTLQAETDQLEDEKSAL 42 (63)
T ss_dssp CHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666667777776651 223455555555555555544433
No 22
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=37.13 E-value=8.4 Score=32.89 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=23.0
Q ss_pred HHHHHHHHHHcCCCCCCCeeEEEEe-cCc
Q 019960 259 LNNLTQALESAGIDLSQANISVQID-LGK 286 (333)
Q Consensus 259 l~~lt~al~~sgvdlsqa~isvqi~-lgk 286 (333)
..-|.++|+..|+++|||+||=-|. ||.
T Consensus 22 q~eL~~~L~~~G~~VtqaTisRDL~eL~~ 50 (149)
T 1b4a_A 22 QDELVDRLREAGFNVTQATVSRDIKEMQL 50 (149)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHcCC
Confidence 3568889999999999999997666 554
No 23
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=32.99 E-value=47 Score=20.82 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=16.5
Q ss_pred CCChhhhhHHHHHHHHHHHH
Q 019960 77 KRDTASFLLEVIEYVQYLQE 96 (333)
Q Consensus 77 K~DKasIL~~AIeYIk~Lq~ 96 (333)
++..+.+|-+|.+||...+.
T Consensus 1 ~~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 45678899999999987765
No 24
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=32.38 E-value=61 Score=23.45 Aligned_cols=24 Identities=8% Similarity=0.333 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHhccCCCC
Q 019960 51 VTEQRRRSKINERFQILREIIPHS 74 (333)
Q Consensus 51 ~~ERrRR~rINe~f~~LrsLVP~~ 74 (333)
.++|-+|...++-+.+|+.+.|..
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~l 26 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDM 26 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHcccC
Confidence 578889999999999999999987
No 25
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=31.40 E-value=9.7 Score=33.80 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=18.5
Q ss_pred HHHHHHHHcCCCC-CCCeeEEEE
Q 019960 261 NLTQALESAGIDL-SQANISVQI 282 (333)
Q Consensus 261 ~lt~al~~sgvdl-sqa~isvqi 282 (333)
-|-++|+..|++. +||+||=.|
T Consensus 52 EL~~~L~~~Gi~viTQATvSRDI 74 (180)
T 3v4g_A 52 EIVEALKQEGFENINQSKVSRML 74 (180)
T ss_dssp HHHHHHHHTTCTTCCHHHHHHHH
T ss_pred HHHHHHHHCCCcccCHHHHHHHH
Confidence 4678899999999 999999533
No 26
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=30.01 E-value=13 Score=28.16 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhhh
Q 019960 89 EYVQYLQEKVQKYEVSY 105 (333)
Q Consensus 89 eYIk~Lq~~v~~Le~~~ 105 (333)
.||+.|+.+|..|+...
T Consensus 29 ~~i~~LE~~v~~le~~~ 45 (70)
T 1gd2_E 29 DHLKALETQVVTLKELH 45 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555544433
No 27
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=29.94 E-value=35 Score=24.43 Aligned_cols=22 Identities=0% Similarity=0.104 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhhhcccc
Q 019960 88 IEYVQYLQEKVQKYEVSYQDWS 109 (333)
Q Consensus 88 IeYIk~Lq~~v~~Le~~~~~l~ 109 (333)
-.||..|+.+|..|+.....+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999998876554
No 28
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=28.35 E-value=48 Score=26.59 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhccCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHhhhc
Q 019960 58 SKINERFQILREIIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEVSYQ 106 (333)
Q Consensus 58 ~rINe~f~~LrsLVP~~~~K~DKasIL~~AIeYIk~Lq~~v~~Le~~~~ 106 (333)
.++.+.|..|.+.+- -+.+.+=+||.+|.++++.|+..+.
T Consensus 48 ~kFee~fe~l~s~l~---------~f~e~a~e~vp~L~~~i~vle~~~~ 87 (94)
T 3fx7_A 48 DKFSEVLDNLKSTFN---------EFDEAAQEQIAWLKERIRVLEEDYL 87 (94)
T ss_dssp HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------HHHHhhHHHhHHHHHHHHHhHHHHH
Confidence 345555555544332 1345788999999999999998764
No 29
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=21.58 E-value=24 Score=25.28 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhhhcccccCc
Q 019960 89 EYVQYLQEKVQKYEVSYQDWSAEP 112 (333)
Q Consensus 89 eYIk~Lq~~v~~Le~~~~~l~~e~ 112 (333)
.||..|+.+|..|+.++..+..+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888888887766554433
No 30
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=20.76 E-value=99 Score=21.19 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhc
Q 019960 84 LLEVIEYVQYLQEKVQKYEVSYQ 106 (333)
Q Consensus 84 L~~AIeYIk~Lq~~v~~Le~~~~ 106 (333)
+.+--+||++|+++..+|+.-++
T Consensus 5 vkelknyiqeleernaelknlke 27 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKE 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHH
Confidence 45667899999999988875443
No 31
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=20.49 E-value=55 Score=23.80 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhhhccc
Q 019960 88 IEYVQYLQEKVQKYEVSYQDW 108 (333)
Q Consensus 88 IeYIk~Lq~~v~~Le~~~~~l 108 (333)
-.||..|+.+|..||.....+
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999866543
No 32
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=20.12 E-value=50 Score=23.30 Aligned_cols=21 Identities=19% Similarity=0.272 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhhhccc
Q 019960 88 IEYVQYLQEKVQKYEVSYQDW 108 (333)
Q Consensus 88 IeYIk~Lq~~v~~Le~~~~~l 108 (333)
-.||..|+.++..|+.....+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l 63 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRL 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 357777777777777665544
Done!