BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019961
(333 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8P179|GLMM_STRP8 Phosphoglucosamine mutase OS=Streptococcus pyogenes serotype M18
(strain MGAS8232) GN=glmM PE=3 SV=1
Length = 451
Score = 35.4 bits (80), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 26/150 (17%)
Query: 150 MFKNAQYRLELQQSLEQVAL----------PEVLDKKDTPDYAPGTQK----------NV 189
F N ++L Q LE AL P DY G +K ++
Sbjct: 112 FFGNDGFKLADDQELEIEALLDAPEDTLPRPSAEGLGTLVDYPEGLRKYEKFLVTTGTDL 171
Query: 190 SGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLK 249
SG + +G + A+ L AEI + + NG N + + + + P+ L+
Sbjct: 172 SGMTVALDTANGAASVSARDVFLDLNAEIAVIGEK-----PNGLN-INDGVGSTHPEQLQ 225
Query: 250 ELTSSAGEDVVLAMNTFIKRLLAVSDPGQM 279
EL G D+ LA + RL+AV + G++
Sbjct: 226 ELVKETGADLGLAFDGDSDRLIAVDETGEI 255
>sp|Q48TV1|GLMM_STRPM Phosphoglucosamine mutase OS=Streptococcus pyogenes serotype M28
(strain MGAS6180) GN=glmM PE=3 SV=1
Length = 451
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 26/150 (17%)
Query: 150 MFKNAQYRLELQQSLEQVAL----------PEVLDKKDTPDYAPGTQK----------NV 189
F N ++L Q LE AL P DY G +K ++
Sbjct: 112 FFGNDGFKLADDQELEIEALLDAPEDTLPRPSAEGLGTLVDYPEGLRKYEKFLVTTGTDL 171
Query: 190 SGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLK 249
SG + +G + A+ L AEI + + NG N + + + + P+ L+
Sbjct: 172 SGMTVALDTANGAASVSARDVFLDLNAEIAVIGEK-----PNGLN-INDGVGSTHPEQLQ 225
Query: 250 ELTSSAGEDVVLAMNTFIKRLLAVSDPGQM 279
EL G D+ LA + RL+AV + G++
Sbjct: 226 ELVKETGADLGLAFDGDSDRLIAVDETGEI 255
>sp|A2REP8|GLMM_STRPG Phosphoglucosamine mutase OS=Streptococcus pyogenes serotype M5
(strain Manfredo) GN=glmM PE=3 SV=1
Length = 451
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 26/150 (17%)
Query: 150 MFKNAQYRLELQQSLEQVAL----------PEVLDKKDTPDYAPGTQK----------NV 189
F N ++L Q LE AL P DY G +K ++
Sbjct: 112 FFGNDGFKLADDQELEIEALLDAPEDTLPRPSAEGLGTLVDYPEGLRKYEKFLVTTGTDL 171
Query: 190 SGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLK 249
SG + +G + A+ L AEI + + NG N + + + + P+ L+
Sbjct: 172 SGMTVALDTANGAASVSARDVFLDLNAEIAVIGEK-----PNGLN-INDGVGSTHPEQLQ 225
Query: 250 ELTSSAGEDVVLAMNTFIKRLLAVSDPGQM 279
EL G D+ LA + RL+AV + G++
Sbjct: 226 ELVKETGADLGLAFDGDSDRLIAVDETGEI 255
>sp|Q1J6W8|GLMM_STRPF Phosphoglucosamine mutase OS=Streptococcus pyogenes serotype M4
(strain MGAS10750) GN=glmM PE=3 SV=1
Length = 451
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 26/150 (17%)
Query: 150 MFKNAQYRLELQQSLEQVAL----------PEVLDKKDTPDYAPGTQK----------NV 189
F N ++L Q LE AL P DY G +K ++
Sbjct: 112 FFGNDGFKLADDQELEIEALLDAPEDTLPRPSAEGLGTLVDYPEGLRKYEKFLVTTGTDL 171
Query: 190 SGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLK 249
SG + +G + A+ L AEI + + NG N + + + + P+ L+
Sbjct: 172 SGMTVALDTANGAASVSARDVFLDLNAEIAVIGEK-----PNGLN-INDGVGSTHPEQLQ 225
Query: 250 ELTSSAGEDVVLAMNTFIKRLLAVSDPGQM 279
EL G D+ LA + RL+AV + G++
Sbjct: 226 ELVKETGADLGLAFDGDSDRLIAVDETGEI 255
>sp|Q1JH49|GLMM_STRPD Phosphoglucosamine mutase OS=Streptococcus pyogenes serotype M2
(strain MGAS10270) GN=glmM PE=3 SV=1
Length = 451
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 26/150 (17%)
Query: 150 MFKNAQYRLELQQSLEQVAL----------PEVLDKKDTPDYAPGTQK----------NV 189
F N ++L Q LE AL P DY G +K ++
Sbjct: 112 FFGNDGFKLADDQELEIEALLDAPEDTLPRPSAEGLGTLVDYPEGLRKYEKFLVTTGTDL 171
Query: 190 SGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLK 249
SG + +G + A+ L AEI + + NG N + + + + P+ L+
Sbjct: 172 SGMTVALDTANGAASVSARDVFLDLNAEIAVIGEK-----PNGLN-INDGVGSTHPEQLQ 225
Query: 250 ELTSSAGEDVVLAMNTFIKRLLAVSDPGQM 279
EL G D+ LA + RL+AV + G++
Sbjct: 226 ELVKETGADLGLAFDGDSDRLIAVDETGEI 255
>sp|Q5XCE0|GLMM_STRP6 Phosphoglucosamine mutase OS=Streptococcus pyogenes serotype M6
(strain ATCC BAA-946 / MGAS10394) GN=glmM PE=3 SV=1
Length = 451
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 26/150 (17%)
Query: 150 MFKNAQYRLELQQSLEQVAL----------PEVLDKKDTPDYAPGTQK----------NV 189
F N ++L Q LE AL P DY G +K ++
Sbjct: 112 FFGNDGFKLADDQELEIEALLDAPEDTLPRPSAEGLGTLVDYPEGLRKYEKFLVTTGTDL 171
Query: 190 SGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLK 249
SG + +G + A+ L AEI + + NG N + + + + P+ L+
Sbjct: 172 SGMTVALDTANGAASVSARDVFLDLNAEIAVIGEK-----PNGLN-INDGVGSTHPEQLQ 225
Query: 250 ELTSSAGEDVVLAMNTFIKRLLAVSDPGQM 279
EL G D+ LA + RL+AV + G++
Sbjct: 226 ELVKETGADLGLAFDGDSDRLIAVDETGEI 255
>sp|Q1JM03|GLMM_STRPC Phosphoglucosamine mutase OS=Streptococcus pyogenes serotype M12
(strain MGAS9429) GN=glmM PE=3 SV=1
Length = 451
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 26/150 (17%)
Query: 150 MFKNAQYRLELQQSLEQVAL----------PEVLDKKDTPDYAPGTQK----------NV 189
F N ++L Q LE AL P DY G +K ++
Sbjct: 112 FFGNDGFKLADDQELEIEALLDAPEDTLPRPSAEGLGTLVDYPEGLRKYEKFLVTTGTDL 171
Query: 190 SGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLK 249
SG + +G + A+ L AEI + + NG N + + + + P+ L+
Sbjct: 172 SGMTVALDTANGAASVSARDVFLDLNAEIAVIGEK-----PNGLN-INDGVGSTHPEQLQ 225
Query: 250 ELTSSAGEDVVLAMNTFIKRLLAVSDPGQM 279
EL G D+ LA + RL+AV + G++
Sbjct: 226 ELVKETGADLGLAFDGDSDRLIAVDETGEI 255
>sp|Q1JC19|GLMM_STRPB Phosphoglucosamine mutase OS=Streptococcus pyogenes serotype M12
(strain MGAS2096) GN=glmM PE=3 SV=1
Length = 451
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 26/150 (17%)
Query: 150 MFKNAQYRLELQQSLEQVAL----------PEVLDKKDTPDYAPGTQK----------NV 189
F N ++L Q LE AL P DY G +K ++
Sbjct: 112 FFGNDGFKLADDQELEIEALLDAPEDTLPRPSAEGLGTLVDYPEGLRKYEKFLVTTGTDL 171
Query: 190 SGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLK 249
SG + +G + A+ L AEI + + NG N + + + + P+ L+
Sbjct: 172 SGMTVALDTANGAASVSARDVFLDLNAEIAVIGEK-----PNGLN-INDGVGSTHPEQLQ 225
Query: 250 ELTSSAGEDVVLAMNTFIKRLLAVSDPGQM 279
EL G D+ LA + RL+AV + G++
Sbjct: 226 ELVKETGADLGLAFDGDSDRLIAVDETGEI 255
>sp|P0DB39|GLMM_STRPQ Phosphoglucosamine mutase OS=Streptococcus pyogenes serotype M3
(strain SSI-1) GN=glmM PE=3 SV=1
Length = 451
Score = 35.4 bits (80), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 26/150 (17%)
Query: 150 MFKNAQYRLELQQSLEQVAL----------PEVLDKKDTPDYAPGTQK----------NV 189
F N ++L Q LE AL P DY G +K ++
Sbjct: 112 FFGNDGFKLADDQELEIEALLDAPEDTLPRPSAEGLGTLVDYPEGLRKYEKFLVTTGTDL 171
Query: 190 SGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLK 249
SG + +G + A+ L AEI + + NG N + + + + P+ L+
Sbjct: 172 SGMTVALDTANGAASVSARDVFLDLNAEIAVIGEK-----PNGLN-INDGVGSTHPEQLQ 225
Query: 250 ELTSSAGEDVVLAMNTFIKRLLAVSDPGQM 279
EL G D+ LA + RL+AV + G++
Sbjct: 226 ELVKETGADLGLAFDGDSDRLIAVDETGEI 255
>sp|P0DB38|GLMM_STRP3 Phosphoglucosamine mutase OS=Streptococcus pyogenes serotype M3
(strain ATCC BAA-595 / MGAS315) GN=glmM PE=3 SV=1
Length = 451
Score = 35.4 bits (80), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 26/150 (17%)
Query: 150 MFKNAQYRLELQQSLEQVAL----------PEVLDKKDTPDYAPGTQK----------NV 189
F N ++L Q LE AL P DY G +K ++
Sbjct: 112 FFGNDGFKLADDQELEIEALLDAPEDTLPRPSAEGLGTLVDYPEGLRKYEKFLVTTGTDL 171
Query: 190 SGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLK 249
SG + +G + A+ L AEI + + NG N + + + + P+ L+
Sbjct: 172 SGMTVALDTANGAASVSARDVFLDLNAEIAVIGEK-----PNGLN-INDGVGSTHPEQLQ 225
Query: 250 ELTSSAGEDVVLAMNTFIKRLLAVSDPGQM 279
EL G D+ LA + RL+AV + G++
Sbjct: 226 ELVKETGADLGLAFDGDSDRLIAVDETGEI 255
>sp|Q99ZW8|GLMM_STRP1 Phosphoglucosamine mutase OS=Streptococcus pyogenes serotype M1
GN=glmM PE=3 SV=1
Length = 451
Score = 35.0 bits (79), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 26/150 (17%)
Query: 150 MFKNAQYRLELQQSLEQVAL----------PEVLDKKDTPDYAPGTQK----------NV 189
F N ++L Q LE AL P DY G +K ++
Sbjct: 112 FFGNDGFKLADDQELEIEALLDAPEDTLPRPSAEGLGTLVDYPEGLRKYEKFLVTTGTDL 171
Query: 190 SGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLK 249
SG + +G + A+ L AEI + + NG N + + + + P+ L+
Sbjct: 172 SGMTVALDTANGAASVSARDVFLDLNAEIAVIGEK-----PNGLN-INDGVGSTRPEQLQ 225
Query: 250 ELTSSAGEDVVLAMNTFIKRLLAVSDPGQM 279
EL G D+ LA + RL+AV + G++
Sbjct: 226 ELVKETGADLGLAFDGDSDRLIAVDETGEI 255
>sp|Q1B1Z8|PATR_MYCSS Putative phenylalanine aminotransferase OS=Mycobacterium sp.
(strain MCS) GN=pat PE=3 SV=1
Length = 358
Score = 34.7 bits (78), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 35/115 (30%)
Query: 177 DTPDYAPGTQKNVSGEVFRWNN--VSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQN 234
D P Y PG K V G + +N V GP + + A IE+ QL R NG
Sbjct: 11 DIPAYTPG--KTVPGAIKIASNETVHGP--------LPSVRAAIEKATDQLNRYPDNGYL 60
Query: 235 ELLEYLKTLEPQNLK-----------------------ELTSSAGEDVVLAMNTF 266
EL E+L + +NL ++TSS G++V+ A +F
Sbjct: 61 ELREHLASHLDKNLGAGAFTPEQIAVGCGSVSLCQQLIQITSSVGDEVIFAWRSF 115
>sp|A1UN51|PATR_MYCSK Putative phenylalanine aminotransferase OS=Mycobacterium sp.
(strain KMS) GN=pat PE=3 SV=1
Length = 358
Score = 34.7 bits (78), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 35/115 (30%)
Query: 177 DTPDYAPGTQKNVSGEVFRWNN--VSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQN 234
D P Y PG K V G + +N V GP + + A IE+ QL R NG
Sbjct: 11 DIPAYTPG--KTVPGAIKIASNETVHGP--------LPSVRAAIEKATDQLNRYPDNGYL 60
Query: 235 ELLEYLKTLEPQNLK-----------------------ELTSSAGEDVVLAMNTF 266
EL E+L + +NL ++TSS G++V+ A +F
Sbjct: 61 ELREHLASHLDKNLGAGAFTPEQIAVGCGSVSLCQQLIQITSSVGDEVIFAWRSF 115
>sp|A3Q7J9|PATR_MYCSJ Putative phenylalanine aminotransferase OS=Mycobacterium sp.
(strain JLS) GN=pat PE=3 SV=1
Length = 358
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 35/115 (30%)
Query: 177 DTPDYAPGTQKNVSGEVFRWNN--VSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQN 234
D P Y PG K V G + +N V GP + + A IE+ QL R NG
Sbjct: 11 DIPAYTPG--KTVPGAIKIASNETVHGP--------LPSVRAAIEKATDQLNRYPDNGYL 60
Query: 235 ELLEYLKTLEPQNLK-----------------------ELTSSAGEDVVLAMNTF 266
EL E+L + +NL ++TSS G++V+ A +F
Sbjct: 61 ELREHLASHLDKNLGAGAFTPEQIAVGCGSVSLCQQLIQITSSVGDEVIFAWRSF 115
>sp|O34596|YOBK_BACSU Uncharacterized protein YobK OS=Bacillus subtilis (strain 168)
GN=yobK PE=1 SV=1
Length = 152
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 141 MYSVMMTGYMFKNAQYRLELQQSLEQVALPE---VLDKKDTPDYAPGTQKNVSGE--VFR 195
++ V++ GY F +A + E L + V++ D Y T K GE V
Sbjct: 55 LFGVLVLGYNFDHASVVNRTNEYKEHYGLTDGLVVIEDVDYFAYCLDTNKMKDGECPVVE 114
Query: 196 WNNVSGPEKIDAKKYIEFLEAEIEE 220
W+ V G + A +IEF +I+E
Sbjct: 115 WDRVIGYQDTVADSFIEFFYNKIQE 139
>sp|P19735|PRP6_YEAST Pre-mRNA-splicing factor 6 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PRP6 PE=1 SV=1
Length = 899
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 18/127 (14%)
Query: 159 ELQQSLEQVALPEVLDKKDTPDYAPGTQKNVSGEVFRWNNVSGPEK-----IDAKKYIE- 212
+L++SL V E +D D D+ ++N E + P+ +D K E
Sbjct: 106 DLKESLAAVTESEWMDIPDATDFTRRNKRNRIQEQLNRKTYAAPDSLIPGNVDLNKLTEE 165
Query: 213 ---FLEAEIEELNRQLGRKATN--------GQNELLEYLKTLEPQNLKELTSSAGEDVVL 261
L+++I+E QL + A+N + L YLK LE + L+ + ED+
Sbjct: 166 REKLLQSQIDENLAQLTKNASNPIQVNKPNAATDALSYLKDLENDRVNSLSDATLEDLQ- 224
Query: 262 AMNTFIK 268
M T +K
Sbjct: 225 KMRTILK 231
>sp|P01578|IFNB1_BOVIN Interferon beta-1 OS=Bos taurus GN=IFNB1 PE=3 SV=1
Length = 186
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 37/82 (45%)
Query: 218 IEELNRQLGRKATNGQNELLEYLKTLEPQNLKELTSSAGEDVVLAMNTFIKRLLAVSDPG 277
++E + LG+ + Q+ L + P+ +K+ ED +L M ++ + +
Sbjct: 35 LKECQKLLGQLPSTSQHCLEARMDFQMPEEMKQEQQFQKEDAILVMYEVLQHIFGILTRD 94
Query: 278 QMKTSVTETSAPELAKLLYWLM 299
T +ET +L K LYW M
Sbjct: 95 FSSTGWSETIIEDLLKELYWQM 116
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,429,013
Number of Sequences: 539616
Number of extensions: 4876695
Number of successful extensions: 19409
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 19293
Number of HSP's gapped (non-prelim): 169
length of query: 333
length of database: 191,569,459
effective HSP length: 118
effective length of query: 215
effective length of database: 127,894,771
effective search space: 27497375765
effective search space used: 27497375765
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)