Query 019961
Match_columns 333
No_of_seqs 174 out of 220
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 05:55:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019961.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019961hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05542 DUF760: Protein of un 100.0 8.6E-33 1.9E-37 221.9 9.7 85 81-165 1-86 (86)
2 PF05542 DUF760: Protein of un 100.0 3.3E-28 7.2E-33 195.3 10.0 85 234-319 1-86 (86)
3 PF04977 DivIC: Septum formati 55.4 21 0.00046 27.0 4.1 41 212-253 20-62 (80)
4 PF07531 TAFH: NHR1 homology t 44.8 11 0.00024 31.7 1.1 35 246-280 11-47 (96)
5 PF12726 SEN1_N: SEN1 N termin 31.1 3.1E+02 0.0067 29.9 9.6 102 212-318 4-106 (727)
6 smart00549 TAFH TAF homology. 30.9 38 0.00082 28.4 2.1 34 247-280 11-46 (92)
7 KOG3276 Uncharacterized conser 20.9 1.2E+02 0.0025 26.8 3.4 59 31-89 20-81 (125)
8 PF14261 DUF4351: Domain of un 20.1 2.6E+02 0.0056 21.2 4.7 39 215-253 6-44 (59)
9 PF06698 DUF1192: Protein of u 17.5 1.5E+02 0.0032 22.9 2.9 24 206-229 25-48 (59)
10 PF13877 RPAP3_C: Potential Mo 15.5 3.3E+02 0.0072 21.5 4.7 32 232-263 20-52 (94)
No 1
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=99.98 E-value=8.6e-33 Score=221.88 Aligned_cols=85 Identities=44% Similarity=0.733 Sum_probs=83.7
Q ss_pred hHHHHHHHhcCchHHHHHhhcCCHHHHHHHHHHHHHhhcCC-CCCCceeEEEechHhHHHHHHHHHhHhHhhcchhHHHH
Q 019961 81 DILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTL-PPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLE 159 (333)
Q Consensus 81 n~L~~ylq~~~Pe~i~~~sk~aspeV~eai~~~V~~lLG~l-p~~~f~v~i~tsre~La~Ll~s~mMtGYfLrnaE~Rl~ 159 (333)
|.||+|||+++||.+++|+++|||||+|||++||.+|||.+ |+++|+++|+|+|++||+||+|+|||||||||||||++
T Consensus 1 n~L~~yi~~l~pe~~~~l~~~~s~ev~e~m~~~v~~llG~l~p~~~~~~~i~~s~~~La~L~~~~mm~GYfLr~~E~R~~ 80 (86)
T PF05542_consen 1 NDLLQYIQSLKPERIQQLSEPASPEVLEAMKQHVSGLLGNLSPSDQFNVTIQTSRENLAQLLAWSMMTGYFLRNAEQRLE 80 (86)
T ss_pred ChHHHHHHHCCHHHHHHhhccCCHHHHHHHHHHHHHHHcCCCCcccCcceeEECHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHhhhc
Q 019961 160 LQQSLE 165 (333)
Q Consensus 160 Le~sL~ 165 (333)
||++|+
T Consensus 81 Le~sL~ 86 (86)
T PF05542_consen 81 LERSLK 86 (86)
T ss_pred HHHhcC
Confidence 999985
No 2
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=99.95 E-value=3.3e-28 Score=195.35 Aligned_cols=85 Identities=36% Similarity=0.668 Sum_probs=81.7
Q ss_pred hhHHHHHhhcChHHHHHhhhccCHHHHHHHHHHHHHhhccc-CCCCCccceeecCHHHHHHHHHHHHHhhhhhhhhHHHH
Q 019961 234 NELLEYLKTLEPQNLKELTSSAGEDVVLAMNTFIKRLLAVS-DPGQMKTSVTETSAPELAKLLYWLMVVGYSIRNIEVRF 312 (333)
Q Consensus 234 N~LL~YlkSL~Pe~L~~La~~~S~EV~~~Iek~Vq~LLG~l-~p~~~~~~i~~tSr~~LarLL~waMm~GYfLR~~E~R~ 312 (333)
|+|++||++++||.++++++++||||+++|+++|++++|.+ |+++|+++|. +++++||+||+||||+|||||++|+|+
T Consensus 1 n~L~~yi~~l~pe~~~~l~~~~s~ev~e~m~~~v~~llG~l~p~~~~~~~i~-~s~~~La~L~~~~mm~GYfLr~~E~R~ 79 (86)
T PF05542_consen 1 NDLLQYIQSLKPERIQQLSEPASPEVLEAMKQHVSGLLGNLSPSDQFNVTIQ-TSRENLAQLLAWSMMTGYFLRNAEQRL 79 (86)
T ss_pred ChHHHHHHHCCHHHHHHhhccCCHHHHHHHHHHHHHHHcCCCCcccCcceeE-ECHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999 7788888877 999999999999999999999999999
Q ss_pred HHHHhhC
Q 019961 313 DMERVLG 319 (333)
Q Consensus 313 eLe~sL~ 319 (333)
+||++|.
T Consensus 80 ~Le~sL~ 86 (86)
T PF05542_consen 80 ELERSLK 86 (86)
T ss_pred HHHHhcC
Confidence 9999984
No 3
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=55.45 E-value=21 Score=26.96 Aligned_cols=41 Identities=24% Similarity=0.433 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhhhccCCchhHHHHHhhc--ChHHHHHhhh
Q 019961 212 EFLEAEIEELNRQLGRKATNGQNELLEYLKTL--EPQNLKELTS 253 (333)
Q Consensus 212 ~~Lqsel~sl~~ql~~~~~~~~N~LL~YlkSL--~Pe~L~~La~ 253 (333)
.+++.+++++++++... .....+|...++.+ +|+.+.++|+
T Consensus 20 ~~~~~ei~~l~~~i~~l-~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEEL-KKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 35677777777776643 23467777777777 7888877775
No 4
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=44.83 E-value=11 Score=31.66 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=28.0
Q ss_pred HHHHHhhhc-cCHHHHHHHHHHHHHhh-cccCCCCCc
Q 019961 246 QNLKELTSS-AGEDVVLAMNTFIKRLL-AVSDPGQMK 280 (333)
Q Consensus 246 e~L~~La~~-~S~EV~~~Iek~Vq~LL-G~l~p~~~~ 280 (333)
-+|.++|+. .|||+.+.++..|++|+ |.++++.|.
T Consensus 11 ~tLi~las~~~spev~~~Vr~LV~~L~~~~i~~EeF~ 47 (96)
T PF07531_consen 11 NTLIQLASDKQSPEVGENVRELVQNLVDGKIEAEEFT 47 (96)
T ss_dssp HHHHHHHCCSC-CCHHHHHHHHHHHHHTTSS-HHHHH
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 378899999 99999999999999998 566666663
No 5
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=31.09 E-value=3.1e+02 Score=29.90 Aligned_cols=102 Identities=8% Similarity=0.076 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHhhhccCCchhHHHHHhhcChHHHHHhhhccCHHHHHHHHHHHHHhhcccCCCCCccceeecCHHHH
Q 019961 212 EFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLKELTSSAGEDVVLAMNTFIKRLLAVSDPGQMKTSVTETSAPEL 291 (333)
Q Consensus 212 ~~Lqsel~sl~~ql~~~~~~~~N~LL~YlkSL~Pe~L~~La~~~S~EV~~~Iek~Vq~LLG~l~p~~~~~~i~~tSr~~L 291 (333)
..+...++.|.+++..-...+..-+-.|.++.++|.|+.+.+....==.+.|-++.+..-..+....- . +....+
T Consensus 4 ~~l~~~L~~C~~CV~~~~~~k~~~~~~~~~~~~~e~V~~f~~~l~~wd~~rI~~~L~~~~~~~~~~~~---~--~~~~~~ 78 (727)
T PF12726_consen 4 NRLSECLSSCDKCVRNYHRGKKSLRQRFAESFPEENVDQFFNMLDNWDIQRILPGLDKAKSILESIEP---M--TRSRAL 78 (727)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC---C--CccchH
Confidence 34677888999988865555677788899999999999998776444444454444443322211000 0 111456
Q ss_pred HHHHHHHHHhhhhhhhhH-HHHHHHHhh
Q 019961 292 AKLLYWLMVVGYSIRNIE-VRFDMERVL 318 (333)
Q Consensus 292 arLL~waMm~GYfLR~~E-~R~eLe~sL 318 (333)
.-.++|||..=..||+=+ .|..|...+
T Consensus 79 ~~aiyE~L~~p~lLr~~~~l~~~F~~~f 106 (727)
T PF12726_consen 79 LLAIYECLCNPALLRDDEELRELFDAIF 106 (727)
T ss_pred HHHHHHHHhCHHHHcCcHHHHHHHHHHH
Confidence 677899999999999655 888888665
No 6
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=30.91 E-value=38 Score=28.41 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=29.1
Q ss_pred HHHHhhhccC-HHHHHHHHHHHHHhh-cccCCCCCc
Q 019961 247 NLKELTSSAG-EDVVLAMNTFIKRLL-AVSDPGQMK 280 (333)
Q Consensus 247 ~L~~La~~~S-~EV~~~Iek~Vq~LL-G~l~p~~~~ 280 (333)
+|.++++..+ ||+-+-++..|++|+ |.++++.|.
T Consensus 11 tLi~ls~~~~qpe~~~~Vr~LV~~L~~~~i~~EeF~ 46 (92)
T smart00549 11 TLIQLSNDISQPEVAERVRTLVLGLVNGTITAEEFT 46 (92)
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHHhCCCCHHHHH
Confidence 6889999999 999999999999998 667777663
No 7
>KOG3276 consensus Uncharacterized conserved protein, contains YggU domain [Function unknown]
Probab=20.91 E-value=1.2e+02 Score=26.77 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=39.1
Q ss_pred eeeecccccCCCCCcceeeeeeccCCCCCC-CCCCCCCCCCCCCCCC--CCcchHHHHHHHh
Q 019961 31 SVRCPIKTKKNNNGRLALRIQAYDSSKNES-NNNGSNDSKPPNGALP--KGRRDILLEYVKN 89 (333)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~n~L~~ylq~ 89 (333)
.-.||.+-.-+-.|++.+-++|-.+++-+. ..-++.+-.-.-.+.| ++-.++|++|+-+
T Consensus 20 ~~~~p~~i~~d~~g~V~i~IhakpgaK~s~It~v~~e~V~V~IaApp~eGeANaeLl~ylsk 81 (125)
T KOG3276|consen 20 DKPVPPCISVDTGGLVQIAIHAKPGAKQSAITDVGDEAVGVAIAAPPREGEANAELLEYLSK 81 (125)
T ss_pred cCCCCCceEecCCCeEEEEEEecCCccccceeeccccccceEEecCCccchhhHHHHHHHHH
Confidence 346777777788999999999999998776 4333332222222222 3457899999853
No 8
>PF14261 DUF4351: Domain of unknown function (DUF4351)
Probab=20.07 E-value=2.6e+02 Score=21.17 Aligned_cols=39 Identities=28% Similarity=0.310 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhhccCCchhHHHHHhhcChHHHHHhhh
Q 019961 215 EAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLKELTS 253 (333)
Q Consensus 215 qsel~sl~~ql~~~~~~~~N~LL~YlkSL~Pe~L~~La~ 253 (333)
|.+..-+.+++.++-+.-+.++..=|++++.++|..++.
T Consensus 6 eg~~~lllRlL~rrFG~lp~~~~~~I~~l~~eqLE~l~e 44 (59)
T PF14261_consen 6 EGEARLLLRLLTRRFGELPPEIQERIQQLSLEQLEALAE 44 (59)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHcCCHHHHHHHHH
Confidence 344555667788777778888888899999988888874
No 9
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=17.51 E-value=1.5e+02 Score=22.88 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhc
Q 019961 206 DAKKYIEFLEAEIEELNRQLGRKA 229 (333)
Q Consensus 206 dA~~YI~~Lqsel~sl~~ql~~~~ 229 (333)
|-.+||..|++||.-++..+.++.
T Consensus 25 EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999988877653
No 10
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=15.46 E-value=3.3e+02 Score=21.50 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=25.9
Q ss_pred CchhHHHHHhhcChHHHHHhhh-ccCHHHHHHH
Q 019961 232 GQNELLEYLKTLEPQNLKELTS-SAGEDVVLAM 263 (333)
Q Consensus 232 ~~N~LL~YlkSL~Pe~L~~La~-~~S~EV~~~I 263 (333)
..+...+||++++|+.+..+-+ ..++|++.-|
T Consensus 20 ~~~~~~~yL~~i~p~~l~~if~~~l~~~~L~~i 52 (94)
T PF13877_consen 20 DPEERYEYLKSIPPDSLPKIFKNSLEPEFLSEI 52 (94)
T ss_pred CHHHHHHHHHhCChHHHHHHHHccCCHHHHHHH
Confidence 4669999999999999999874 4667766655
Done!