Query 019961
Match_columns 333
No_of_seqs 174 out of 220
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 09:41:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019961.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019961hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hlo_A Protein (transcription 38.5 25 0.00085 26.6 3.3 22 206-227 54-75 (80)
2 1nkp_B MAX protein, MYC proto- 37.6 29 0.001 26.2 3.6 22 206-227 44-65 (83)
3 2h7b_A Core-binding factor, ML 36.5 15 0.0005 30.3 1.7 33 247-279 15-48 (105)
4 1am9_A Srebp-1A, protein (ster 30.9 34 0.0011 26.2 2.9 21 206-226 47-67 (82)
5 2p6v_A Transcription initiatio 29.0 30 0.001 28.8 2.5 41 235-280 21-64 (114)
6 1jeb_A Hemoglobin zeta chain; 27.7 27 0.00092 28.2 2.0 70 80-149 64-141 (142)
7 2w72_C Human hemoglobin A; iro 26.6 34 0.0012 27.6 2.4 69 81-149 64-140 (141)
8 1lj2_A NSP3-C, nonstructural R 25.7 1E+02 0.0035 25.4 5.0 65 207-271 11-84 (110)
9 1lhs_A Myoglobin; oxygen stora 24.9 34 0.0012 28.1 2.2 69 81-149 70-146 (153)
10 2r80_A Hemoglobin subunit alph 23.6 49 0.0017 26.8 2.8 70 80-149 63-140 (141)
11 1out_A Hemoglobin I; heme, oxy 23.5 25 0.00087 28.7 1.1 70 80-149 65-142 (143)
12 3mvc_A Globin protein 6; oxyge 23.5 90 0.0031 26.0 4.6 70 81-150 66-153 (161)
13 1spg_A Hemoglobin; carbon mono 23.3 26 0.00089 28.7 1.1 70 80-149 66-143 (144)
14 1xq5_A Hemoglobin alpha-1 chai 22.2 27 0.00094 28.4 1.0 70 80-149 65-142 (143)
15 2dc3_A Cytoglobin; myoglobin, 22.1 34 0.0012 29.5 1.7 71 80-150 89-170 (193)
16 1out_B Hemoglobin I; heme, oxy 21.6 14 0.00046 30.5 -1.0 70 81-150 69-146 (146)
17 1gd2_E Transcription factor PA 21.6 40 0.0014 25.6 1.7 38 208-246 28-65 (70)
18 2er8_A Regulatory protein Leu3 20.4 77 0.0026 22.5 3.1 23 206-228 46-68 (72)
19 3coq_A Regulatory protein GAL4 20.3 1.9E+02 0.0065 21.1 5.4 22 207-228 43-64 (89)
No 1
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=38.48 E-value=25 Score=26.58 Aligned_cols=22 Identities=14% Similarity=0.424 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHhh
Q 019961 206 DAKKYIEFLEAEIEELNRQLGR 227 (333)
Q Consensus 206 dA~~YI~~Lqsel~sl~~ql~~ 227 (333)
.|.+||..|+.++..|++++.+
T Consensus 54 ~Ai~YI~~L~~~~~~L~~e~~~ 75 (80)
T 1hlo_A 54 KATEYIQYMRRKNHTHQQDIDD 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999887654
No 2
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=37.58 E-value=29 Score=26.23 Aligned_cols=22 Identities=14% Similarity=0.424 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHhh
Q 019961 206 DAKKYIEFLEAEIEELNRQLGR 227 (333)
Q Consensus 206 dA~~YI~~Lqsel~sl~~ql~~ 227 (333)
.|.+||..|+.++..++.++.+
T Consensus 44 ~Ai~YI~~L~~~~~~l~~e~~~ 65 (83)
T 1nkp_B 44 KATEYIQYMRRKNHTHQQDIDD 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999988888776554
No 3
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=36.50 E-value=15 Score=30.33 Aligned_cols=33 Identities=9% Similarity=0.197 Sum_probs=28.1
Q ss_pred HHHHhhhccCHHHHHHHHHHHHHhh-cccCCCCC
Q 019961 247 NLKELTSSAGEDVVLAMNTFIKRLL-AVSDPGQM 279 (333)
Q Consensus 247 ~L~~La~~~S~EV~~~Iek~Vq~LL-G~l~p~~~ 279 (333)
+|.++++..+||+.+-++..|++|+ |.++++.|
T Consensus 15 tLi~la~~~~pev~~~Vr~LVq~Ll~~~i~~EeF 48 (105)
T 2h7b_A 15 TLQQFGNDISPEIGERVRTLVLGLVNSTLTIEEF 48 (105)
T ss_dssp HHHHSHHHHCHHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHhCCCCHHHH
Confidence 6788888889999999999999998 56766665
No 4
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=30.92 E-value=34 Score=26.15 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 019961 206 DAKKYIEFLEAEIEELNRQLG 226 (333)
Q Consensus 206 dA~~YI~~Lqsel~sl~~ql~ 226 (333)
+|.+||..|+.++..|+++..
T Consensus 47 ~Ai~YI~~Lq~~~~~L~~e~~ 67 (82)
T 1am9_A 47 KAIDYIRFLQHSNQKLKQENL 67 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999988877644
No 5
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=29.03 E-value=30 Score=28.82 Aligned_cols=41 Identities=17% Similarity=0.341 Sum_probs=31.9
Q ss_pred hHHHHHhhcChHHHHHhhhc--cCHHHHHHHHHHHHHhh-cccCCCCCc
Q 019961 235 ELLEYLKTLEPQNLKELTSS--AGEDVVLAMNTFIKRLL-AVSDPGQMK 280 (333)
Q Consensus 235 ~LL~YlkSL~Pe~L~~La~~--~S~EV~~~Iek~Vq~LL-G~l~p~~~~ 280 (333)
.+..+|. +|-+|++. .+||+.+-++..|++|+ |.++++.|.
T Consensus 21 Kck~FL~-----tLi~las~~~~spev~~~Vr~LVq~Ll~~~i~~EeFt 64 (114)
T 2p6v_A 21 XCXNFLS-----TLIXLASSGXQSTETAANVXELVQNLLDGXIEAEDFT 64 (114)
T ss_dssp HHHHHHH-----HHHHHHTSSSSCHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHH-----HHHHHHhccccChHHHHHHHHHHHHHHHccCCHHHHH
Confidence 4445553 67888877 99999999999999998 567776663
No 6
>1jeb_A Hemoglobin zeta chain; oxygen transport, oxygen storage/transport complex; HET: HEM; 2.10A {Homo sapiens} SCOP: a.1.1.2
Probab=27.69 E-value=27 Score=28.21 Aligned_cols=70 Identities=10% Similarity=0.120 Sum_probs=52.4
Q ss_pred chHHHHHHHhcCc--hHHHHHhhc------CCHHHHHHHHHHHHHhhcCCCCCCceeEEEechHhHHHHHHHHHhHhH
Q 019961 80 RDILLEYVKNVQP--EFMELFVKR------APEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGY 149 (333)
Q Consensus 80 ~n~L~~ylq~~~P--e~i~~~sk~------aspeV~eai~~~V~~lLG~lp~~~f~v~i~tsre~La~Ll~s~mMtGY 149 (333)
-+.|..++++++- ..+..+++. ..|+-++++...+-..|...-++.|...+...+..+-..++..|..||
T Consensus 64 ~~~l~~~v~~ld~l~~~l~~L~~~H~~k~~V~p~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~~~~~~v~~~l~~~y 141 (142)
T 1jeb_A 64 VAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPADFTAEAHAAWDKFLSVVSSVLTEKY 141 (142)
T ss_dssp HHHHHHHHHTTTCHHHHTHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 3666777777654 344555543 466778888888777777765667888788899999999999999998
No 7
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A* 1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A* 3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A* 1b86_A* ...
Probab=26.57 E-value=34 Score=27.56 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=52.0
Q ss_pred hHHHHHHHhcCch--HHHHHhh------cCCHHHHHHHHHHHHHhhcCCCCCCceeEEEechHhHHHHHHHHHhHhH
Q 019961 81 DILLEYVKNVQPE--FMELFVK------RAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGY 149 (333)
Q Consensus 81 n~L~~ylq~~~Pe--~i~~~sk------~aspeV~eai~~~V~~lLG~lp~~~f~v~i~tsre~La~Ll~s~mMtGY 149 (333)
+.|..++++++-. .+..+++ ...|+-++++...+-..|...-++.|...+...+..+-..++.+|..||
T Consensus 64 ~al~~~v~~ld~l~~~l~~L~~~H~~~~gV~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~i~~~l~~~y 140 (141)
T 2w72_C 64 DALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKY 140 (141)
T ss_dssp HHHHHHHHTTTSHHHHTHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhHhhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 5666777766542 5555553 4567888888888877777765567887778889999999999999998
No 8
>1lj2_A NSP3-C, nonstructural RNA-binding protein 34, NS34, NCVP4; NSP3, homodimer, translation, mRNA, closed loop, coiled coil; 2.38A {Simian rotavirus A} SCOP: h.1.13.2
Probab=25.66 E-value=1e+02 Score=25.43 Aligned_cols=65 Identities=20% Similarity=0.271 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHhhcC--h----HHHHHhhh---ccCHHHHHHHHHHHHHhh
Q 019961 207 AKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLE--P----QNLKELTS---SAGEDVVLAMNTFIKRLL 271 (333)
Q Consensus 207 A~~YI~~Lqsel~sl~~ql~~~~~~~~N~LL~YlkSL~--P----e~L~~La~---~~S~EV~~~Iek~Vq~LL 271 (333)
.+++|-.||-....+++.++.+-+.--..+-.||+|++ + +..|+|-. .-..++++-||..+..|+
T Consensus 11 QQ~~In~lq~~~~klE~dlq~ki~slisSiEw~l~Smel~de~K~DieQqLnsid~Inp~~aiddiE~~IrnlI 84 (110)
T 1lj2_A 11 QQAHIAELQVYNNKLERDLQNKIGSLTSSIEWYLRSMELDPEIKADIEQQINSIDAINPLHAFDDLESVIRNLI 84 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTSCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHhccccccCcchhHhHHHHHHHHHH
Confidence 44556556655566666666544445567788998865 2 33444443 223455666666666665
No 9
>1lhs_A Myoglobin; oxygen storage; HET: HEM; 2.00A {Caretta caretta} SCOP: a.1.1.2 PDB: 1lht_A*
Probab=24.86 E-value=34 Score=28.11 Aligned_cols=69 Identities=13% Similarity=0.235 Sum_probs=54.6
Q ss_pred hHHHHHHHhcCc--hHHHHHhh------cCCHHHHHHHHHHHHHhhcCCCCCCceeEEEechHhHHHHHHHHHhHhH
Q 019961 81 DILLEYVKNVQP--EFMELFVK------RAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGY 149 (333)
Q Consensus 81 n~L~~ylq~~~P--e~i~~~sk------~aspeV~eai~~~V~~lLG~lp~~~f~v~i~tsre~La~Ll~s~mMtGY 149 (333)
+.|..++++++- ..+.++++ ...|+-++++...+-..|...-++.|...+...+..+-..++..|..+|
T Consensus 70 ~al~~~v~~ldd~~~~l~~L~~~H~~k~~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y 146 (153)
T 1lhs_A 70 TALGRILKQKNNHEQELKPLAESHATKHKIPVKYLEFICEIIVKVIAEKHPSDFGADSQAAMKKALELFRNDMASKY 146 (153)
T ss_dssp HHHHHHHTTTTCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777654 56666664 4566888888888888887766677888888899999999999999888
No 10
>2r80_A Hemoglobin subunit alpha-A; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3mju_A* 3dhr_A* 3mjp_A* 1faw_A* 3eok_A* 3k8b_A* 2qmb_A* 3fs4_A* 3a59_A* 1a4f_A* 1hv4_A* 2zfb_A* 1c40_A* 3at5_A* 3at6_A*
Probab=23.64 E-value=49 Score=26.83 Aligned_cols=70 Identities=10% Similarity=0.182 Sum_probs=54.6
Q ss_pred chHHHHHHHhcCc--hHHHHHhh------cCCHHHHHHHHHHHHHhhcCCCCCCceeEEEechHhHHHHHHHHHhHhH
Q 019961 80 RDILLEYVKNVQP--EFMELFVK------RAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGY 149 (333)
Q Consensus 80 ~n~L~~ylq~~~P--e~i~~~sk------~aspeV~eai~~~V~~lLG~lp~~~f~v~i~tsre~La~Ll~s~mMtGY 149 (333)
-+.|..++++++- ..+.+|++ ...|+-++++...+-..|+..-++.|...+...+..+-..++..|..+|
T Consensus 63 ~~al~~~v~~ld~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~va~~l~~~y 140 (141)
T 2r80_A 63 AEALVEAANHIDDIAGALSKLSDLHAQKLRVDPVNFKLLGHCFLVVVAVHFPSLLTPEVHASLDKFVLAVGTVLTAKY 140 (141)
T ss_dssp HHHHHHHHHTTTCHHHHTHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 3677777877765 45555553 4567888888888888887766677888888899999999999999998
No 11
>1out_A Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_A*
Probab=23.53 E-value=25 Score=28.72 Aligned_cols=70 Identities=10% Similarity=0.096 Sum_probs=54.5
Q ss_pred chHHHHHHHhcCc--hHHHHHhh------cCCHHHHHHHHHHHHHhhcCCCCCCceeEEEechHhHHHHHHHHHhHhH
Q 019961 80 RDILLEYVKNVQP--EFMELFVK------RAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGY 149 (333)
Q Consensus 80 ~n~L~~ylq~~~P--e~i~~~sk------~aspeV~eai~~~V~~lLG~lp~~~f~v~i~tsre~La~Ll~s~mMtGY 149 (333)
-+.|.+++++++- ..+.+|++ ...|+=++++.+.+-..|+..-++.|...+...+..+-..++..|..+|
T Consensus 65 ~~al~~~v~~ld~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y 142 (143)
T 1out_A 65 MGAIGKAVGLMDDLVGGMSALSDLHAFKLRVDPGNFKILSHNILVTLAIHFPSDFTPEVHIAVDKFLAAVSAALADKY 142 (143)
T ss_dssp HHHHHHHHHTTTCHHHHTHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 3677788888775 34444543 4567888888888888887766677888888899999999999999988
No 12
>3mvc_A Globin protein 6; oxygen sensor, heme-binding protein, C. elegans, OXY transport, electron transport; HET: HEM; 1.40A {Caenorhabditis elegans}
Probab=23.52 E-value=90 Score=26.01 Aligned_cols=70 Identities=6% Similarity=0.047 Sum_probs=49.5
Q ss_pred hHHHHHHHhcCc-----hHHHHHhhcCC------------HHHHHHHHHHHHH-hhcCCCCCCceeEEEechHhHHHHHH
Q 019961 81 DILLEYVKNVQP-----EFMELFVKRAP------------EQVVDAMRQTVTN-MIGTLPPQFFAVTVTTVAENLAQLMY 142 (333)
Q Consensus 81 n~L~~ylq~~~P-----e~i~~~sk~as------------peV~eai~~~V~~-lLG~lp~~~f~v~i~tsre~La~Ll~ 142 (333)
+.|-..|.+++- ..+..+.+.|- |+-.+.+...+-- ++..-....|...+...|..+-..++
T Consensus 66 ~~l~~~V~~Ldd~~~l~~~L~~LG~~H~~~~~~~~~~Gv~~~~f~~~g~all~~~l~~~~~~~~t~e~~~AW~~~~~~i~ 145 (161)
T 3mvc_A 66 VLMDDLIANLDSPSATVAGLREAGEKHVWPTRNQYGCPFHAHLLDQFATAMIERTLEWGEKKDRTETTQRGWTKIVLFVT 145 (161)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHTTCCSSTTTTSSCCCTHHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 356666777665 34566666665 8889998888765 55444445666677889999999999
Q ss_pred HHHhHhHh
Q 019961 143 SVMMTGYM 150 (333)
Q Consensus 143 s~mMtGYf 150 (333)
..|-.||-
T Consensus 146 ~~m~~gy~ 153 (161)
T 3mvc_A 146 EQLKEGFQ 153 (161)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999996
No 13
>1spg_A Hemoglobin; carbon monoxide, R-state, teleost FISH effect, oxygen transport; HET: HEM; 1.95A {Leiostomus xanthurus} SCOP: a.1.1.2
Probab=23.33 E-value=26 Score=28.68 Aligned_cols=70 Identities=11% Similarity=0.124 Sum_probs=55.2
Q ss_pred chHHHHHHHhcCc--hHHHHHhh------cCCHHHHHHHHHHHHHhhcCCCCCCceeEEEechHhHHHHHHHHHhHhH
Q 019961 80 RDILLEYVKNVQP--EFMELFVK------RAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGY 149 (333)
Q Consensus 80 ~n~L~~ylq~~~P--e~i~~~sk------~aspeV~eai~~~V~~lLG~lp~~~f~v~i~tsre~La~Ll~s~mMtGY 149 (333)
-+.|.+++++++- ..+.+|++ ...|+-++++.+.+-..|+..-++.|...+...++.+-..++..|..+|
T Consensus 66 ~~al~~~v~~ld~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y 143 (144)
T 1spg_A 66 MAAVGKAVKSIDNLVGGLSQLSELHAFKLRVDPANFKILAHNIILVISMYFPGDFTPEVHLSVDKFLACLALALSEKY 143 (144)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHSTTTCCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 3677788888775 34455543 4677888899888888888776677888888899999999999999988
No 14
>1xq5_A Hemoglobin alpha-1 chain; FISH hemoglobin, rapid oxidation, structural genomics, protein structure initiative, PSI, CESG; HET: HEM; 1.90A {Perca flavescens} SCOP: a.1.1.2 PDB: 3bj1_A* 3bj2_A* 3bj3_A* 3bcq_A*
Probab=22.21 E-value=27 Score=28.38 Aligned_cols=70 Identities=9% Similarity=0.131 Sum_probs=53.3
Q ss_pred chHHHHHHHhcCc--hHHHHHhh------cCCHHHHHHHHHHHHHhhcCCCCCCceeEEEechHhHHHHHHHHHhHhH
Q 019961 80 RDILLEYVKNVQP--EFMELFVK------RAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGY 149 (333)
Q Consensus 80 ~n~L~~ylq~~~P--e~i~~~sk------~aspeV~eai~~~V~~lLG~lp~~~f~v~i~tsre~La~Ll~s~mMtGY 149 (333)
-+.|..++++++- ..+.++++ ...|+-++++.+.+-..|...-++.|...+...+..+-..++..|..+|
T Consensus 65 ~~al~~~v~~ld~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y 142 (143)
T 1xq5_A 65 MGGIVDAVASIDDLNAGLLALSELHAFTLRVDPANFKILSHCILVLLAVKFPKDFTPEVHISYDKFFSALARALAEKY 142 (143)
T ss_dssp HHHHHHHHHTTTCHHHHTHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 3677777777764 44555553 4566888888888877777765667887788899999999999999998
No 15
>2dc3_A Cytoglobin; myoglobin, heme, oxygen transport, oxygen storage, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.68A {Homo sapiens} PDB: 1v5h_A* 3ag0_A* 1urv_A* 1umo_A* 1ury_A* 1ut0_A* 1ux9_A*
Probab=22.07 E-value=34 Score=29.47 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=52.0
Q ss_pred chHHHHHHHhcCc-----hHHHHHhhc------CCHHHHHHHHHHHHHhhcCCCCCCceeEEEechHhHHHHHHHHHhHh
Q 019961 80 RDILLEYVKNVQP-----EFMELFVKR------APEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTG 148 (333)
Q Consensus 80 ~n~L~~ylq~~~P-----e~i~~~sk~------aspeV~eai~~~V~~lLG~lp~~~f~v~i~tsre~La~Ll~s~mMtG 148 (333)
-+.|..++++++- ..+..|++. ..|+-++++...+-..|...-++.|...+...|..+...++..|-.+
T Consensus 89 ~~al~~~v~~Ldd~~~l~~~l~~L~~~H~~~~gV~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~ 168 (193)
T 2dc3_A 89 MGALNTVVENLHDPDKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAA 168 (193)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888876 455556544 45677778877777776665446677777788999999999999877
Q ss_pred Hh
Q 019961 149 YM 150 (333)
Q Consensus 149 Yf 150 (333)
|-
T Consensus 169 y~ 170 (193)
T 2dc3_A 169 YK 170 (193)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 16
>1out_B Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_B*
Probab=21.61 E-value=14 Score=30.50 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=51.3
Q ss_pred hHHHHHHHhcCc--hHHHHHhh------cCCHHHHHHHHHHHHHhhcCCCCCCceeEEEechHhHHHHHHHHHhHhHh
Q 019961 81 DILLEYVKNVQP--EFMELFVK------RAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYM 150 (333)
Q Consensus 81 n~L~~ylq~~~P--e~i~~~sk------~aspeV~eai~~~V~~lLG~lp~~~f~v~i~tsre~La~Ll~s~mMtGYf 150 (333)
+.|-+++++++- ..+.++++ ...|+=++++.+.+-..|...-++.|...+...+..+-..++..|..+||
T Consensus 69 ~al~~~v~~ld~l~~~l~~L~~~H~~k~~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y~ 146 (146)
T 1out_B 69 GALDKAVKNMGNILATYKSLSETHANKLFVDPDNFRVLADVLTIVIAAKFGASFTPEIQATWQKFMKVVVAAMGSRYF 146 (146)
T ss_dssp HTHHHHHHTTTCHHHHTHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 556677777665 34444443 34667788888777777766555677777788999999999999999996
No 17
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=21.59 E-value=40 Score=25.56 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHhhcChH
Q 019961 208 KKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQ 246 (333)
Q Consensus 208 ~~YI~~Lqsel~sl~~ql~~~~~~~~N~LL~YlkSL~Pe 246 (333)
..||..|+.++.+++...... ......|..+|..|..|
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l-~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSST-TLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 478999999998887654431 22456777777766554
No 18
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=20.43 E-value=77 Score=22.55 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhh
Q 019961 206 DAKKYIEFLEAEIEELNRQLGRK 228 (333)
Q Consensus 206 dA~~YI~~Lqsel~sl~~ql~~~ 228 (333)
....||..|+.++++|+.++...
T Consensus 46 ~~~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 46 YKRARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999888753
No 19
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=20.30 E-value=1.9e+02 Score=21.06 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 019961 207 AKKYIEFLEAEIEELNRQLGRK 228 (333)
Q Consensus 207 A~~YI~~Lqsel~sl~~ql~~~ 228 (333)
...|+..|+.++..|+..+...
T Consensus 43 ~~~~~~~L~~r~~~le~~l~~l 64 (89)
T 3coq_A 43 TRAHLTEVESRLERLEQLFLLI 64 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999998887754
Done!