Query 019961
Match_columns 333
No_of_seqs 174 out of 220
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 09:41:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019961.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019961hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uklc_ a.38.1.1 (C:) SREBP-2 45.3 7.2 0.00052 26.6 2.9 23 205-227 29-51 (61)
2 d1wmub_ a.1.1.2 (B:) Hemoglobi 41.8 4.5 0.00033 31.4 1.5 55 96-150 92-146 (146)
3 d2pp4a1 a.277.1.1 (A:119-225) 28.8 9.1 0.00066 29.7 1.3 33 247-279 14-47 (107)
4 d1gg2g_ a.137.3.1 (G:) Transdu 27.0 17 0.0012 24.6 2.3 32 211-242 2-36 (54)
5 d2p6va1 a.277.1.1 (A:582-678) 23.9 20 0.0015 27.1 2.5 34 247-280 20-56 (97)
6 d2dn3b1 a.1.1.2 (B:2-146) Hemo 23.5 11 0.00078 29.1 0.8 50 101-150 96-145 (145)
7 d1am9a_ a.38.1.1 (A:) SREBP-1a 20.4 38 0.0028 23.7 3.3 21 206-226 47-67 (80)
8 d1nkpa_ a.38.1.1 (A:) Myc prot 20.2 38 0.0027 23.9 3.3 21 206-226 49-69 (88)
9 d1nlwa_ a.38.1.1 (A:) Mad prot 19.1 42 0.0031 23.2 3.3 21 206-226 44-64 (79)
10 d2jdia1 a.69.1.1 (A:380-510) F 17.4 87 0.0063 23.7 5.1 39 233-271 86-126 (131)
No 1
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.31 E-value=7.2 Score=26.56 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=19.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhh
Q 019961 205 IDAKKYIEFLEAEIEELNRQLGR 227 (333)
Q Consensus 205 idA~~YI~~Lqsel~sl~~ql~~ 227 (333)
-+|-+||..|+.++..|+.+...
T Consensus 29 ~~Ai~YI~~Lq~~~~~L~~e~~~ 51 (61)
T d1uklc_ 29 RKAIDYIKYLQQVNHKLRQENMV 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999877543
No 2
>d1wmub_ a.1.1.2 (B:) Hemoglobin, beta-chain {Aldabra giant tortoise (Geochelone gigantea) [TaxId: 167804]}
Probab=41.82 E-value=4.5 Score=31.42 Aligned_cols=55 Identities=11% Similarity=0.104 Sum_probs=47.0
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhhcCCCCCCceeEEEechHhHHHHHHHHHhHhHh
Q 019961 96 ELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYM 150 (333)
Q Consensus 96 ~~~sk~aspeV~eai~~~V~~lLG~lp~~~f~v~i~tsre~La~Ll~s~mMtGYf 150 (333)
........|+-++.|.+.+-..|...-++.|...+...|.++-..++.+|..||.
T Consensus 92 ~h~~~~v~~~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y~ 146 (146)
T d1wmub_ 92 HCEKLHVDPENFKLLGNILIIVLATHFPKEFTPASQAAWTKLVNAVAHALALGYH 146 (146)
T ss_dssp HHHTSCCCTHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCccCCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhccC
Confidence 4555678899999999988888877777788888889999999999999999994
No 3
>d2pp4a1 a.277.1.1 (A:119-225) ETO {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.75 E-value=9.1 Score=29.68 Aligned_cols=33 Identities=9% Similarity=0.177 Sum_probs=27.7
Q ss_pred HHHHhhhccCHHHHHHHHHHHHHhh-cccCCCCC
Q 019961 247 NLKELTSSAGEDVVLAMNTFIKRLL-AVSDPGQM 279 (333)
Q Consensus 247 ~L~~La~~~S~EV~~~Iek~Vq~LL-G~l~p~~~ 279 (333)
+|.+++...+||+-+-++..|++|+ |.++++.|
T Consensus 14 tLi~l~~~~~pe~~~~Vr~LV~~L~~~~i~~EeF 47 (107)
T d2pp4a1 14 TLQQYGNDISPEIGERVRTLVLGLVNSTLTIEEF 47 (107)
T ss_dssp HHHHHHHHHCSTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHhccCCchHHHHHHHHHHHHHhCCcCHHHH
Confidence 6788888899999999999999998 56666655
No 4
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=26.97 E-value=17 Score=24.59 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhh---hccCCchhHHHHHhh
Q 019961 211 IEFLEAEIEELNRQLGR---KATNGQNELLEYLKT 242 (333)
Q Consensus 211 I~~Lqsel~sl~~ql~~---~~~~~~N~LL~YlkS 242 (333)
|.+++.++++|+.++.. +.+..-.+|+.|...
T Consensus 2 i~q~rk~VeqLr~e~~~~RikvS~aa~~l~~y~e~ 36 (54)
T d1gg2g_ 2 IAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEA 36 (54)
T ss_dssp HHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHh
Confidence 56788999999999764 234456778888754
No 5
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.88 E-value=20 Score=27.14 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=27.1
Q ss_pred HHHHhhhc--cCHHHHHHHHHHHHHhh-cccCCCCCc
Q 019961 247 NLKELTSS--AGEDVVLAMNTFIKRLL-AVSDPGQMK 280 (333)
Q Consensus 247 ~L~~La~~--~S~EV~~~Iek~Vq~LL-G~l~p~~~~ 280 (333)
+|.+++.. .+||+-+-++..|++|+ |.++++.|.
T Consensus 20 tLi~l~s~~~~spe~~~~Vr~LV~~L~~~~i~~EEF~ 56 (97)
T d2p6va1 20 TLIKLASSGKQSTETAANVKELVQNLLDGKIEAEDFT 56 (97)
T ss_dssp HHHHHHTSSSSCHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHHhCCcCHHHHH
Confidence 67788765 88999999999999998 567666653
No 6
>d2dn3b1 a.1.1.2 (B:2-146) Hemoglobin, beta-chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.53 E-value=11 Score=29.13 Aligned_cols=50 Identities=6% Similarity=0.070 Sum_probs=42.6
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCCceeEEEechHhHHHHHHHHHhHhHh
Q 019961 101 RAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYM 150 (333)
Q Consensus 101 ~aspeV~eai~~~V~~lLG~lp~~~f~v~i~tsre~La~Ll~s~mMtGYf 150 (333)
...|+-++.|.+.+-..|...-++.|...+...|+++-.+++.+|-.||.
T Consensus 96 gv~~~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y~ 145 (145)
T d2dn3b1 96 HVDPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH 145 (145)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTGGGC
T ss_pred CCChhHHHHHHHHHHHHHHHHcCccCCHHHHHHHHHHHHHHHHHHHhccC
Confidence 57788888888888888877666778888888999999999999999994
No 7
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.41 E-value=38 Score=23.66 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 019961 206 DAKKYIEFLEAEIEELNRQLG 226 (333)
Q Consensus 206 dA~~YI~~Lqsel~sl~~ql~ 226 (333)
.|.+||..|+.+.+.|+++..
T Consensus 47 ~a~~yI~~L~~~~~~L~~e~~ 67 (80)
T d1am9a_ 47 KAIDYIRFLQHSNQKLKQENL 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999988877644
No 8
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.24 E-value=38 Score=23.95 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 019961 206 DAKKYIEFLEAEIEELNRQLG 226 (333)
Q Consensus 206 dA~~YI~~Lqsel~sl~~ql~ 226 (333)
.|.+||..|+.++..+..+..
T Consensus 49 ~A~~yI~~L~~~~~~l~~~~~ 69 (88)
T d1nkpa_ 49 KATAYILSVQAEEQKLISEED 69 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999888866544
No 9
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.08 E-value=42 Score=23.17 Aligned_cols=21 Identities=29% Similarity=0.189 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 019961 206 DAKKYIEFLEAEIEELNRQLG 226 (333)
Q Consensus 206 dA~~YI~~Lqsel~sl~~ql~ 226 (333)
.|.+||..|+.++..+.++..
T Consensus 44 ~A~~yI~~L~~~~~~l~~~~~ 64 (79)
T d1nlwa_ 44 KAKLHIKKLEDSDRKAVHQID 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999888866644
No 10
>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain 3 {Cow (Bos taurus) [TaxId: 9913]}
Probab=17.38 E-value=87 Score=23.69 Aligned_cols=39 Identities=13% Similarity=0.248 Sum_probs=32.1
Q ss_pred chhHHHHHhhcChHHHHHhhh--ccCHHHHHHHHHHHHHhh
Q 019961 233 QNELLEYLKTLEPQNLKELTS--SAGEDVVLAMNTFIKRLL 271 (333)
Q Consensus 233 ~N~LL~YlkSL~Pe~L~~La~--~~S~EV~~~Iek~Vq~LL 271 (333)
.+.|++|+++-.|+.+..+.+ ..+.|..+.|+..+....
T Consensus 86 e~~ll~~l~~~~~~~l~~I~~~~~l~de~~~~L~~ai~~f~ 126 (131)
T d2jdia1 86 ENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFL 126 (131)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 488999999999999999975 467888888877776654
Done!