Query 019963
Match_columns 333
No_of_seqs 202 out of 531
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 05:56:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02309 AUX_IAA: AUX/IAA fami 100.0 2.4E-57 5.1E-62 409.5 0.3 191 67-333 1-191 (215)
2 PF00564 PB1: PB1 domain; Int 97.0 0.0022 4.8E-08 49.1 6.3 56 247-329 3-58 (84)
3 cd06398 PB1_Joka2 The PB1 doma 96.8 0.0044 9.4E-08 50.8 6.7 57 247-328 2-61 (91)
4 cd06407 PB1_NLP A PB1 domain i 96.6 0.0076 1.6E-07 48.4 6.7 54 247-327 2-55 (82)
5 smart00666 PB1 PB1 domain. Pho 96.4 0.014 3E-07 44.7 6.9 54 248-329 4-57 (81)
6 cd06396 PB1_NBR1 The PB1 domai 96.3 0.012 2.7E-07 47.7 6.2 52 248-327 3-54 (81)
7 cd05992 PB1 The PB1 domain is 95.9 0.041 8.9E-07 41.8 7.0 55 247-329 2-57 (81)
8 cd06402 PB1_p62 The PB1 domain 95.1 0.095 2.1E-06 43.1 6.9 57 246-327 1-62 (87)
9 cd06403 PB1_Par6 The PB1 domai 94.9 0.068 1.5E-06 43.7 5.6 54 248-327 3-56 (80)
10 cd06409 PB1_MUG70 The MUG70 pr 94.9 0.057 1.2E-06 44.3 5.2 50 255-327 7-58 (86)
11 cd06404 PB1_aPKC PB1 domain is 94.8 0.083 1.8E-06 43.4 5.8 53 248-327 3-55 (83)
12 cd06401 PB1_TFG The PB1 domain 94.1 0.23 5.1E-06 40.6 7.0 58 247-329 2-60 (81)
13 cd06397 PB1_UP1 Uncharacterize 93.5 0.22 4.9E-06 40.8 5.9 52 248-327 3-54 (82)
14 cd06408 PB1_NoxR The PB1 domai 88.8 1.5 3.3E-05 36.1 6.3 54 246-329 3-56 (86)
15 cd06399 PB1_P40 The PB1 domain 60.4 13 0.00029 31.2 3.9 40 260-327 21-60 (92)
16 PF10411 DsbC_N: Disulfide bon 50.8 12 0.00026 27.9 2.0 17 314-330 34-50 (57)
17 cd06395 PB1_Map2k5 PB1 domain 36.6 60 0.0013 27.2 4.1 47 254-327 10-56 (91)
18 PF11576 DUF3236: Protein of u 31.9 17 0.00036 33.1 0.2 16 68-83 94-109 (154)
19 PF07929 PRiA4_ORF3: Plasmid p 27.1 1.6E+02 0.0035 26.0 5.6 81 246-326 5-105 (179)
20 PF09676 TraV: Type IV conjuga 20.7 62 0.0013 26.8 1.6 19 312-330 92-110 (119)
No 1
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []. The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
Probab=100.00 E-value=2.4e-57 Score=409.46 Aligned_cols=191 Identities=62% Similarity=0.963 Sum_probs=6.0
Q ss_pred CCccccccccCCCCCCCccCCccccccCCCccCCCCCCCCCCCCCCCCCCCcccccCCCcchhhhhcccccCcccccccc
Q 019963 67 LNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNVVSGNKRGFSDAMDGFLEGKYLSSSEL 146 (333)
Q Consensus 67 lnlk~TELRLGLPGs~sper~~~~~~~~~~~~~~~~~fpl~p~~~~~~~~~~~~~sG~KRGFsdai~~~~egk~~~~~~~ 146 (333)
||||+|||||||||+++|+.... ..++...+++||||+++|+........
T Consensus 1 ln~~~TELrLGLPG~~~~~~~~~-------------------------~~~~~~~~~~kR~F~~aid~~~~~~~~----- 50 (215)
T PF02309_consen 1 LNLKATELRLGLPGSESPDASSS-------------------------SSSKKSSSGNKRGFSEAIDSSSSNSQS----- 50 (215)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCchhhhhcccCCCCCCCCcccc-------------------------cccccccCcccccchhhhhhccccccc-----
Confidence 79999999999999999882210 123456789999999999865411010
Q ss_pred cCCCCCCCCCCCccccccccCCCcccccccccccccccCCCCCcccccCCCCCCCCCCCCCcccCCcccCCCcccccccc
Q 019963 147 LSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNS 226 (333)
Q Consensus 147 ~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~e~~~~~~~~~~n~~~~~~~~~~~p~akaqVVGWPPIrS~RKN~ 226 (333)
...... .. .. ...+.... ..........+|++++|+|||||||+||||.
T Consensus 51 ~~~~~~------------------~~-~~-----~~~~~~~~-------~~~~~~~~~~~p~~~~~~vgwpp~~s~r~n~ 99 (215)
T PF02309_consen 51 SSSSSS------------------DS-SS-----SSSSSSTS-------SSSSDSSSSSPPASKAQVVGWPPVRSFRKNS 99 (215)
T ss_dssp ------------------------------------------------------------------BTTBS----S----
T ss_pred cccccc------------------cc-Cc-----cccccccc-------ccccccccCCCCcccccccCCCccccccccc
Confidence 000000 00 00 00000000 0000112234577889999999999999998
Q ss_pred cccccCCCccccCcCCCCcceeEEeecCCccceeeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhcc
Q 019963 227 LATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKD 306 (333)
Q Consensus 227 ~~~~sk~~~e~~~k~~~~~~fVKV~MDG~PiGRKVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~d 306 (333)
+... +....++||||+|||+||||||||++|++|++|+.+|++||.+|.|++|++++ +++..+.+
T Consensus 100 ~~~~---------~~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~------~~~~~~~~ 164 (215)
T PF02309_consen 100 LSEK---------QSSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHG------LNESGLLD 164 (215)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc---------ccccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCcccccccc------ccchhhcc
Confidence 7621 11224789999999999999999999999999999999999999999998743 45566778
Q ss_pred CCCCCCeEEEEEeCCCCeeecccCCCC
Q 019963 307 LLHGSEFVLTYEDKDGDWMLVGDVPWE 333 (333)
Q Consensus 307 ll~gseyvLtYEDkEGDwMLVGDVPWe 333 (333)
++++++|+|||||+||||||||||||+
T Consensus 165 ~~~~~~~~l~Y~D~egd~mlvGD~PW~ 191 (215)
T PF02309_consen 165 LLNGSEYVLVYEDKEGDWMLVGDVPWE 191 (215)
T ss_dssp ---------------------------
T ss_pred ccCCcceeEEEECCCCCEEEecCCCHH
Confidence 888899999999999999999999996
No 2
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=97.01 E-value=0.0022 Score=49.11 Aligned_cols=56 Identities=29% Similarity=0.530 Sum_probs=46.1
Q ss_pred eeEEeecCCccceeeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCeee
Q 019963 247 FVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWML 326 (333)
Q Consensus 247 fVKV~MDG~PiGRKVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwML 326 (333)
-|||+..|. +=|.+.+..--+|.+|...+++.|... ...+.|.|.|.||||..
T Consensus 3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~--------------------------~~~~~l~Y~D~dgD~V~ 55 (84)
T PF00564_consen 3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLL--------------------------DEDFQLKYKDEDGDLVT 55 (84)
T ss_dssp EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTS--------------------------TSSEEEEEEETTSSEEE
T ss_pred EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCC--------------------------CccEEEEeeCCCCCEEE
Confidence 489999997 444588888889999999999999740 24889999999999998
Q ss_pred ccc
Q 019963 327 VGD 329 (333)
Q Consensus 327 VGD 329 (333)
+-+
T Consensus 56 i~s 58 (84)
T PF00564_consen 56 ISS 58 (84)
T ss_dssp ESS
T ss_pred eCC
Confidence 753
No 3
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=96.80 E-value=0.0044 Score=50.81 Aligned_cols=57 Identities=26% Similarity=0.330 Sum_probs=45.0
Q ss_pred eeEEeecCCccceeeeCC---CCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCC
Q 019963 247 FVKVSMDGAPYLRKVDLK---NYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGD 323 (333)
Q Consensus 247 fVKV~MDG~PiGRKVDL~---~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGD 323 (333)
-|||.-+|.-+=-++++. ..-+|++|...+.+.|.. ....+|+|.|.|.|||
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l-------------------------~~~~~~~l~Y~Dedgd 56 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSL-------------------------SPDADLSLTYTDEDGD 56 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCC-------------------------CCCCcEEEEEECCCCC
Confidence 489999998555555554 467999999999999964 0125899999999999
Q ss_pred eeecc
Q 019963 324 WMLVG 328 (333)
Q Consensus 324 wMLVG 328 (333)
|+.+-
T Consensus 57 ~V~l~ 61 (91)
T cd06398 57 VVTLV 61 (91)
T ss_pred EEEEc
Confidence 98764
No 4
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=96.61 E-value=0.0076 Score=48.44 Aligned_cols=54 Identities=28% Similarity=0.431 Sum_probs=43.4
Q ss_pred eeEEeecCCccceeeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCeee
Q 019963 247 FVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWML 326 (333)
Q Consensus 247 fVKV~MDG~PiGRKVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwML 326 (333)
=|||...|. -+.+-|..--+|++|...+.++|.. + +...|.|-|.|.||||.+
T Consensus 2 ~vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~--------------~-----------~~~~f~LkY~Ddegd~v~ 54 (82)
T cd06407 2 RVKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKL--------------D-----------DMSAFDLKYLDDDEEWVL 54 (82)
T ss_pred EEEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCC--------------C-----------CCCeeEEEEECCCCCeEE
Confidence 389999887 4556666666999999999999974 0 125899999999999987
Q ss_pred c
Q 019963 327 V 327 (333)
Q Consensus 327 V 327 (333)
+
T Consensus 55 l 55 (82)
T cd06407 55 L 55 (82)
T ss_pred e
Confidence 6
No 5
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=96.41 E-value=0.014 Score=44.72 Aligned_cols=54 Identities=28% Similarity=0.528 Sum_probs=43.7
Q ss_pred eEEeecCCccceeeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCeeec
Q 019963 248 VKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLV 327 (333)
Q Consensus 248 VKV~MDG~PiGRKVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV 327 (333)
|||.-.| --|.+-+..--+|.+|...+.+.|.. ....+.|.|+|.||||+.+
T Consensus 4 vK~~~~~--~~~~~~~~~~~s~~dL~~~i~~~~~~--------------------------~~~~~~l~Y~Dedgd~v~l 55 (81)
T smart00666 4 VKLRYGG--ETRRLSVPRDISFEDLRSKVAKRFGL--------------------------DNQSFTLKYQDEDGDLVSL 55 (81)
T ss_pred EEEEECC--EEEEEEECCCCCHHHHHHHHHHHhCC--------------------------CCCCeEEEEECCCCCEEEe
Confidence 7887755 36777888889999999999999974 0147899999999999876
Q ss_pred cc
Q 019963 328 GD 329 (333)
Q Consensus 328 GD 329 (333)
.+
T Consensus 56 ~s 57 (81)
T smart00666 56 TS 57 (81)
T ss_pred cC
Confidence 53
No 6
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=96.30 E-value=0.012 Score=47.74 Aligned_cols=52 Identities=15% Similarity=0.295 Sum_probs=45.6
Q ss_pred eEEeecCCccceeeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCeeec
Q 019963 248 VKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLV 327 (333)
Q Consensus 248 VKV~MDG~PiGRKVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV 327 (333)
|||.-.|.-+--+++-+..-+|.+|...+.++|.. + .|.|.|-|.||||+++
T Consensus 3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l--------------------------~--~f~lKYlDde~e~v~l 54 (81)
T cd06396 3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGL--------------------------N--DIQIKYVDEENEEVSV 54 (81)
T ss_pred EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCC--------------------------C--cceeEEEcCCCCEEEE
Confidence 89999998777788887788999999999999974 1 6799999999999986
No 7
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=95.88 E-value=0.041 Score=41.82 Aligned_cols=55 Identities=27% Similarity=0.477 Sum_probs=42.8
Q ss_pred eeEEeecCCccceeeeCC-CCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCee
Q 019963 247 FVKVSMDGAPYLRKVDLK-NYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWM 325 (333)
Q Consensus 247 fVKV~MDG~PiGRKVDL~-~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwM 325 (333)
-|||+-.|. -|.+=+. ..-+|.+|...|.+.|... ...+.+.|.|.||||.
T Consensus 2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~--------------------------~~~~~l~y~D~e~d~v 53 (81)
T cd05992 2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLD--------------------------AVSFKLKYPDEDGDLV 53 (81)
T ss_pred cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCC--------------------------CCcEEEEeeCCCCCEE
Confidence 378888765 3444444 8889999999999999741 0378999999999998
Q ss_pred eccc
Q 019963 326 LVGD 329 (333)
Q Consensus 326 LVGD 329 (333)
.+.+
T Consensus 54 ~l~s 57 (81)
T cd05992 54 TISS 57 (81)
T ss_pred EeCC
Confidence 8764
No 8
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=95.05 E-value=0.095 Score=43.07 Aligned_cols=57 Identities=28% Similarity=0.493 Sum_probs=42.2
Q ss_pred ceeEEeecC---Cccceee--eCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeC
Q 019963 246 LFVKVSMDG---APYLRKV--DLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDK 320 (333)
Q Consensus 246 ~fVKV~MDG---~PiGRKV--DL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDk 320 (333)
+.||.+..| .+==|++ |=....+|++|...+.+||.. +.+..|+|.|.|.
T Consensus 1 ~~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~-------------------------l~~~~ftlky~De 55 (87)
T cd06402 1 LTVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPS-------------------------LRGKNFQLFWKDE 55 (87)
T ss_pred CeEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccc-------------------------cCCCcEEEEEECC
Confidence 368888877 2333444 446667999999999999963 1235899999999
Q ss_pred CCCeeec
Q 019963 321 DGDWMLV 327 (333)
Q Consensus 321 EGDwMLV 327 (333)
|||..-+
T Consensus 56 eGDlvtI 62 (87)
T cd06402 56 EGDLVAF 62 (87)
T ss_pred CCCEEee
Confidence 9998654
No 9
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=94.93 E-value=0.068 Score=43.65 Aligned_cols=54 Identities=22% Similarity=0.396 Sum_probs=40.5
Q ss_pred eEEeecCCccceeeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCeeec
Q 019963 248 VKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLV 327 (333)
Q Consensus 248 VKV~MDG~PiGRKVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV 327 (333)
||...|..=-=-.+|.....+|+++..-|++||.. .+..|+|-|.|.+||.+-+
T Consensus 3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l--------------------------~~~~f~i~Y~D~~gDLLPI 56 (80)
T cd06403 3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHI--------------------------PNVDFLIGYTDPHGDLLPI 56 (80)
T ss_pred eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCC--------------------------CCCcEEEEEeCCCCCEecc
Confidence 56666665222245566679999999999999974 1248999999999998754
No 10
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=94.91 E-value=0.057 Score=44.29 Aligned_cols=50 Identities=22% Similarity=0.424 Sum_probs=37.2
Q ss_pred CccceeeeC--CCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCeeec
Q 019963 255 APYLRKVDL--KNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLV 327 (333)
Q Consensus 255 ~PiGRKVDL--~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV 327 (333)
.|-||-+=+ ....||.+|..++.+=|+. + +. ....|.|.|.|.||||+|.
T Consensus 7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~--------------d--------~~-~~~~~~L~YlDDEgD~Vll 58 (86)
T cd06409 7 DPKGRVHRFRLRPSESLEELRTLISQRLGD--------------D--------DF-ETHLYALSYVDDEGDIVLI 58 (86)
T ss_pred CCCCCEEEEEecCCCCHHHHHHHHHHHhCC--------------c--------cc-cCCcccEEEEcCCCCEEEE
Confidence 456665544 4478999999999999864 1 00 0258999999999999986
No 11
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=94.77 E-value=0.083 Score=43.36 Aligned_cols=53 Identities=23% Similarity=0.384 Sum_probs=42.5
Q ss_pred eEEeecCCccceeeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCeeec
Q 019963 248 VKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLV 327 (333)
Q Consensus 248 VKV~MDG~PiGRKVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV 327 (333)
||++-.|.-+--.+|. .-+|++|...+..||+. ..+..|++.|.|.|||-.-+
T Consensus 3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~-------------------------~~~q~ft~kw~DEEGDp~ti 55 (83)
T cd06404 3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRF-------------------------HNDQPFTLKWIDEEGDPCTI 55 (83)
T ss_pred EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCC-------------------------CCCCcEEEEEECCCCCceee
Confidence 7899999866556666 77899999999999974 12358999999999996543
No 12
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=94.07 E-value=0.23 Score=40.58 Aligned_cols=58 Identities=24% Similarity=0.539 Sum_probs=40.9
Q ss_pred eeEEeecCCccceeeeCCCCC-ChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCee
Q 019963 247 FVKVSMDGAPYLRKVDLKNYS-KYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWM 325 (333)
Q Consensus 247 fVKV~MDG~PiGRKVDL~~y~-sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwM 325 (333)
-+|+.-.|. | |++=+..-. +|.+|...+.+.|... .+ ....+++.|.|.|||+.
T Consensus 2 iiK~~~g~D-i-R~~~~~~~~~t~~~L~~~v~~~F~~~----~~-------------------~~~~flIKYkD~dGDlV 56 (81)
T cd06401 2 ILKAQLGDD-I-RRIPIHNEDITYDELLLMMQRVFRGK----LG-------------------SSDDVLIKYKDEDGDLI 56 (81)
T ss_pred eEEEEeCCe-E-EEEeccCccccHHHHHHHHHHHhccc----cC-------------------CcccEEEEEECCCCCEE
Confidence 367777665 3 555554433 9999999999999741 10 12488999999999997
Q ss_pred eccc
Q 019963 326 LVGD 329 (333)
Q Consensus 326 LVGD 329 (333)
=|-+
T Consensus 57 TIts 60 (81)
T cd06401 57 TIFD 60 (81)
T ss_pred Eecc
Confidence 6543
No 13
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=93.47 E-value=0.22 Score=40.85 Aligned_cols=52 Identities=25% Similarity=0.383 Sum_probs=42.2
Q ss_pred eEEeecCCccceeeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCeeec
Q 019963 248 VKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLV 327 (333)
Q Consensus 248 VKV~MDG~PiGRKVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV 327 (333)
-||.-.|. .|++-...-=+|..|++.|+.+|.... . .+.|||.|.|||..=+
T Consensus 3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp~-------------------------~-~~~vtYiDeD~D~ITl 54 (82)
T cd06397 3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLPE-------------------------I-KVGVTYIDNDNDEITL 54 (82)
T ss_pred EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCCh-------------------------h-HeEEEEEcCCCCEEEe
Confidence 37877885 788888888899999999999998511 1 3799999999998644
No 14
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=88.80 E-value=1.5 Score=36.12 Aligned_cols=54 Identities=19% Similarity=0.377 Sum_probs=44.2
Q ss_pred ceeEEeecCCccceeeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCee
Q 019963 246 LFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWM 325 (333)
Q Consensus 246 ~fVKV~MDG~PiGRKVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwM 325 (333)
.-|||+-.|. .|-|-+..--+|++|...+.++|.. ...+.|-|.|. ||..
T Consensus 3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~---------------------------~~~~~iKykDE-GD~i 52 (86)
T cd06408 3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGF---------------------------KRRLKIKMKDD-GDMI 52 (86)
T ss_pred EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCC---------------------------CCceEEEEEcC-CCCc
Confidence 4589998887 6667777777899999999999974 13789999999 9987
Q ss_pred eccc
Q 019963 326 LVGD 329 (333)
Q Consensus 326 LVGD 329 (333)
-++|
T Consensus 53 ti~s 56 (86)
T cd06408 53 TMGD 56 (86)
T ss_pred cccC
Confidence 7765
No 15
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=60.45 E-value=13 Score=31.25 Aligned_cols=40 Identities=23% Similarity=0.432 Sum_probs=31.6
Q ss_pred eeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCeeec
Q 019963 260 KVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLV 327 (333)
Q Consensus 260 KVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV 327 (333)
-=||+..-.|.+|..-..+-|.. .+-+|.|.|.|||..-+
T Consensus 21 ee~l~~~P~~kdLl~lmr~~f~~----------------------------~dIaLNYrD~EGDLIRl 60 (92)
T cd06399 21 EEDLSSTPLLKDLLELTRREFQR----------------------------EDIALNYRDAEGDLIRL 60 (92)
T ss_pred ecccccCccHHHHHHHHHHHhch----------------------------hheeeeeecCCCCEEEE
Confidence 34788888999998888888853 14589999999998644
No 16
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=50.76 E-value=12 Score=27.85 Aligned_cols=17 Identities=29% Similarity=0.755 Sum_probs=14.5
Q ss_pred EEEEEeCCCCeeecccC
Q 019963 314 VLTYEDKDGDWMLVGDV 330 (333)
Q Consensus 314 vLtYEDkEGDwMLVGDV 330 (333)
-+.|.|.||+++++|++
T Consensus 34 ~i~Y~~~dg~yli~G~l 50 (57)
T PF10411_consen 34 GILYVDEDGRYLIQGQL 50 (57)
T ss_dssp EEEEEETTSSEEEES-E
T ss_pred eEEEEcCCCCEEEEeEE
Confidence 48899999999999974
No 17
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=36.58 E-value=60 Score=27.23 Aligned_cols=47 Identities=21% Similarity=0.324 Sum_probs=33.3
Q ss_pred CCccceeeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCeeec
Q 019963 254 GAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLV 327 (333)
Q Consensus 254 G~PiGRKVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV 327 (333)
|..+--.||...+=++.++..++.+....-| --..-|||.|||+.-|
T Consensus 10 gg~vDw~V~~~~~L~F~DvL~~I~~vlp~aT---------------------------~tAFeYEDE~gDRITV 56 (91)
T cd06395 10 GGAVDWTVQSGPQLLFRDVLDVIGQVLPEAT---------------------------TTAFEYEDEDGDRITV 56 (91)
T ss_pred CCcccccccCcccccHHHHHHHHHHhccccc---------------------------ccceeeccccCCeeEe
Confidence 4446667777777888898888877664311 1245799999999876
No 18
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=31.89 E-value=17 Score=33.13 Aligned_cols=16 Identities=50% Similarity=0.729 Sum_probs=9.6
Q ss_pred CccccccccCCCCCCC
Q 019963 68 NLKATELRLGLPGSQS 83 (333)
Q Consensus 68 nlk~TELRLGLPGs~s 83 (333)
||==.-=|||.|||.|
T Consensus 94 DlvIARGRLGvPGSGS 109 (154)
T PF11576_consen 94 DLVIARGRLGVPGSGS 109 (154)
T ss_dssp SEEEEEEE-SSTTS-E
T ss_pred cEEEEcccccCCCCcc
Confidence 3433455999999986
No 19
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=27.05 E-value=1.6e+02 Score=26.00 Aligned_cols=81 Identities=31% Similarity=0.466 Sum_probs=46.5
Q ss_pred ceeEEeecCC--ccceeeeCCCCCChHHHHHHHHHhhcc-------ccccc--cCCC---CC---c--chhhhhhhhhcc
Q 019963 246 LFVKVSMDGA--PYLRKVDLKNYSKYQELSSALEKMFSC-------FTIGQ--YGSH---GA---L--GREMLSESKLKD 306 (333)
Q Consensus 246 ~fVKV~MDG~--PiGRKVDL~~y~sY~eLs~aLekMF~~-------ftigq--~gs~---g~---~--g~e~~~e~~L~d 306 (333)
.-+||..+|. +|=|.|.+..-.+..+|-.+|...|.- |.++. .+.. +. . ......+.+|.+
T Consensus 5 y~lkV~L~~~~p~iwRri~Vp~~~tl~~Lh~~Iq~afgw~~~HL~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 84 (179)
T PF07929_consen 5 YQLKVSLKGSKPPIWRRIEVPADITLADLHEVIQAAFGWDDDHLYEFFIGGERYGIPDEDGMDFSEGDEIKDASEVKLGE 84 (179)
T ss_dssp EEEEEEETT-SS-EEEEEEEETT-BHHHHHHHHHHHTT----S-EEEEEE-TTTSSESSS---------EEETTT-BHHH
T ss_pred EEEEEEEcCCCCCeEEEEEECCCCCHHHHHHHHHHHhCcCCCEeEEEEECCCccccccccccccccCCCcceeeeEEhhh
Confidence 3478888874 899999999999999999999998852 22221 1110 00 0 011133456777
Q ss_pred CCCCCCeEEEEE-eCCCCeee
Q 019963 307 LLHGSEFVLTYE-DKDGDWML 326 (333)
Q Consensus 307 ll~gseyvLtYE-DkEGDwML 326 (333)
++....-.++|. |--.+|++
T Consensus 85 ~~~~~~~~~~Y~YDfGD~W~h 105 (179)
T PF07929_consen 85 LLLEEGDKFTYVYDFGDDWEH 105 (179)
T ss_dssp C-BTTC-EEEEEE-TTTTEEE
T ss_pred hccCcCCEEEEEEcCCCCEEE
Confidence 775556667776 66667765
No 20
>PF09676 TraV: Type IV conjugative transfer system lipoprotein (TraV); InterPro: IPR014118 This entry represents TraV, a component of a conjugative type IV secretion system. TraV is an outer membrane lipoprotein that is believed to interact with the secretin TraK [, , ]. This protein contains three conserved cysteines in the N-terminal half.
Probab=20.68 E-value=62 Score=26.76 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=15.9
Q ss_pred CeEEEEEeCCCCeeecccC
Q 019963 312 EFVLTYEDKDGDWMLVGDV 330 (333)
Q Consensus 312 eyvLtYEDkEGDwMLVGDV 330 (333)
=|++-|+|.+||+..-|.|
T Consensus 92 iwiaP~~D~~g~l~~~~~V 110 (119)
T PF09676_consen 92 IWIAPWEDADGDLHDPGYV 110 (119)
T ss_pred EEEeeeECCCCCEeccceE
Confidence 6899999999999876654
Done!