BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019965
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 137/289 (47%), Gaps = 21/289 (7%)
Query: 42 GFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVLR-NEKHRGYTPLHDELLDPDTQV 100
GF + ++ + Q +D +K FF LP+ K + RGY P E
Sbjct: 34 GFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFGVETAK--GAD 91
Query: 101 HGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETMDRFHQEALEVAKVVAR 160
H D KE ++ G ++P G + NVWPA +P ++ + + V
Sbjct: 92 HYDLKEFWHXGRDLPPG--HRFRAHXADNVWPAE--IPAFKHDVSWLYNSLDGXGGKVLE 147
Query: 161 IIALALDLNADFFDKPEILGEPIATLRLLHYEGQTSDPSKGIYGAGAHSDFGLITLLATD 220
IA L L DFF KP + + + LRLLHY D + G+ AGAH D ITLL
Sbjct: 148 AIATYLKLERDFF-KPTVQ-DGNSVLRLLHYPPIPKD-ATGVR-AGAHGDINTITLLLGA 203
Query: 221 EVLGLQICKDKDAKPQIWEYVPPLKGAFIVNLGDMLERWSNCVFKSTLHRVLG-----NG 275
E GL++ D+D + W + P G ++N+GD LER +N V ST+HRV+ G
Sbjct: 204 EEGGLEVL-DRDGQ---WLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVVNPPPERRG 259
Query: 276 RERYSIAYFVEPSHDCVVECLPTCKSEKNPPKFP-PVKYGSYLSQRYKD 323
RYS +F+ + D ++ L C + +NP ++P + +L QR ++
Sbjct: 260 VPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQRLRE 308
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 136/290 (46%), Gaps = 21/290 (7%)
Query: 34 LKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGYTPLHDEL 93
LK+A LD G ++INHGI + M+ V + FF+L + EK K N++ G +
Sbjct: 69 LKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEK-YANDQATGKIQGYGSK 127
Query: 94 LDPDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETMDRFHQEALE 153
L + ++ E Y+ + PE + ++WP + E + +
Sbjct: 128 LANNASGQLEW-EDYFFHLAYPEEKRDL-------SIWPKTP--SDYIEATSEYAKCLRL 177
Query: 154 VAKVVARIIALALDLNADFFDKPEILGEPIATLRL-LHYEGQTSDPSKGIYGAGAHSDFG 212
+A V + +++ L L D +K E+ G L++ ++Y + P + G AH+D
Sbjct: 178 LATKVFKALSVGLGLEPDRLEK-EVGGLEELLLQMKINYYPKCPQPELAL-GVEAHTDVS 235
Query: 213 LITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGAFIVNLGDMLERWSNCVFKSTLHRVL 272
+T + + V GLQ+ + W + + ++++GD LE SN +KS LHR L
Sbjct: 236 ALTFILHNMVPGLQLFYEGK-----WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGL 290
Query: 273 GNGRE-RYSIAYFVEPSHD-CVVECLPTCKSEKNPPKFPPVKYGSYLSQR 320
N + R S A F EP D V++ LP S ++P KFPP + ++ +
Sbjct: 291 VNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHK 340
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 136/290 (46%), Gaps = 21/290 (7%)
Query: 34 LKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGYTPLHDEL 93
LK+A LD G ++INHGI + M+ V + FF+L + EK K N++ G +
Sbjct: 70 LKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEK-YANDQATGKIQGYGSK 128
Query: 94 LDPDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETMDRFHQEALE 153
L + ++ E Y+ + PE + ++WP + E + +
Sbjct: 129 LANNASGQLEW-EDYFFHLAYPEEKRDL-------SIWPKTP--SDYIEATSEYAKCLRL 178
Query: 154 VAKVVARIIALALDLNADFFDKPEILGEPIATLRL-LHYEGQTSDPSKGIYGAGAHSDFG 212
+A V + +++ L L D +K E+ G L++ ++Y + P + G AH+D
Sbjct: 179 LATKVFKALSVGLGLEPDRLEK-EVGGLEELLLQMKINYYPKCPQPELAL-GVEAHTDVS 236
Query: 213 LITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGAFIVNLGDMLERWSNCVFKSTLHRVL 272
+T + + V GLQ+ + W + + ++++GD LE SN +KS LHR L
Sbjct: 237 ALTFILHNMVPGLQLFYEGK-----WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGL 291
Query: 273 GNGRE-RYSIAYFVEPSHD-CVVECLPTCKSEKNPPKFPPVKYGSYLSQR 320
N + R S A F EP D V++ LP S ++P KFPP + ++ +
Sbjct: 292 VNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHK 341
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 133/290 (45%), Gaps = 21/290 (7%)
Query: 34 LKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGYTPLHDEL 93
LK+A LD G ++INHGI + + V + FF+L + EK K N++ G +
Sbjct: 70 LKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEK-YANDQATGKIQGYGSK 128
Query: 94 LDPDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETMDRFHQEALE 153
L + ++ E Y+ + PE + ++WP + E + +
Sbjct: 129 LANNASGQLEW-EDYFFHLAYPEEKRDL-------SIWPKTP--SDYIEATSEYAKCLRL 178
Query: 154 VAKVVARIIALALDLNADFFDKPEILG-EPIATLRLLHYEGQTSDPSKGIYGAGAHSDFG 212
+A V + +++ L L D +K E+ G E + ++Y + P + G AH+D
Sbjct: 179 LATKVFKALSVGLGLEPDRLEK-EVGGLEELLLQXKINYYPKCPQPELAL-GVEAHTDVS 236
Query: 213 LITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGAFIVNLGDMLERWSNCVFKSTLHRVL 272
+T + + V GLQ+ + W + + + ++GD LE SN +KS LHR L
Sbjct: 237 ALTFILHNXVPGLQLFYEGK-----WVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGL 291
Query: 273 GNGRE-RYSIAYFVEPSHD-CVVECLPTCKSEKNPPKFPPVKYGSYLSQR 320
N + R S A F EP D V++ LP S ++P KFPP + ++ +
Sbjct: 292 VNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIEHK 341
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 121/294 (41%), Gaps = 38/294 (12%)
Query: 17 LHCIDLSSPDIHQSVSLLKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIK 76
L ID + D S ++ + GF + NH I +E ++ ++T+ + FFN +
Sbjct: 4 LETIDYRAAD---SAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFX 60
Query: 77 VLRNEKHRGYTPLHDELLDPDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDI 136
R E H G+ P V D KE Y+ V+P I
Sbjct: 61 FNR-ETHDGFFPASISETAKGHTVK-DIKEYYH--------------------VYPWGRI 98
Query: 137 LPGWRETMDRFHQEALEVAKVVARIIALAL--DLNADF-FDKPEILGEPIATL-RLLHYE 192
R + ++++A +A + I ++ A F PE + TL R+LHY
Sbjct: 99 PDSLRANILAYYEKANTLASELLEWIETYSPDEIKAKFSIPLPEXIANSHKTLLRILHYP 158
Query: 193 GQTSDPSKGIYGAGAHSDFGLITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGAFIVNL 252
T D G A AH D LIT+L T GLQ+ K KD W VP G I+N+
Sbjct: 159 PXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQV-KAKDGS---WLDVPSDFGNIIINI 214
Query: 253 GDMLERWSNCVFKSTLHRVLG-----NGRERYSIAYFVEPSHDCVVECLPTCKS 301
GD L+ S+ F ST HRV+ + R S+ F+ P V+ T S
Sbjct: 215 GDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHPSVVLSERYTADS 268
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 125/290 (43%), Gaps = 35/290 (12%)
Query: 34 LKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGYTPLHDEL 93
+K AC + GFF ++NHGI +E D V +K + ++ K L K + E+
Sbjct: 24 IKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASK--ALEGVQAEV 81
Query: 94 LDPDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETMDRFHQEALE 153
D D++ +++ K N+ PD+ +RE F + +
Sbjct: 82 TD------XDWESTFFL------------KHLPISNISEVPDLDEEYREVXRDFAKRLEK 123
Query: 154 VAKVVARIIALALDLNADFFDKPEILGE--PIATLRLLHYEGQTSDPSKGIYGAGAHSDF 211
+A+ + ++ L L + K G P ++ +Y I G AH+D
Sbjct: 124 LAEELLDLLCENLGLEKGYL-KNAFYGSKGPNFGTKVSNY--PPCPKPDLIKGLRAHTDA 180
Query: 212 -GLITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGAFIVNLGDMLERWSNCVFKSTLHR 270
G+I L D+V GLQ+ KD W VPP + + +VNLGD LE +N +KS HR
Sbjct: 181 GGIILLFQDDKVSGLQLLKDGQ-----WIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHR 235
Query: 271 VLGNGR-ERYSIAYFVEPSHDCVVECLPTC---KSEKNPPKFPPVKYGSY 316
V+ R S+A F P D V+ P ++E+N +P + Y
Sbjct: 236 VIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDY 285
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 132/312 (42%), Gaps = 54/312 (17%)
Query: 34 LKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGYTPLHDEL 93
+ A D GFFY +NHGI+ + + +Q + F++ + + K + R Y H +
Sbjct: 32 IDAASRDTGFFYAVNHGINVQRL----SQKTKEFHMSITPEEK--WDLAIRAYNKEHQDQ 85
Query: 94 LDPDTQVHGDYKEGYYIGVE-----------VPEGDP-----ESEKPFYGPNVWPAPDIL 137
+ + GYY+ + P P +++ P + NVWP
Sbjct: 86 V----------RAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKH 135
Query: 138 PGWRETMDRFHQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTSD 197
PG+++ ++++ + ++ + + ALAL +FF + + +A++ L+ Y
Sbjct: 136 PGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPY 195
Query: 198 PSKGIYGAGA--------HSDFGLITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGAFI 249
P I A H D LIT+L V LQ+ ++ + ++
Sbjct: 196 PEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQV-----ETAAGYQDIEADDTGYL 250
Query: 250 VNLGDMLERWSNCVFKSTLHRVLGNGRERYSIAYFVEPSHDCVVECL----PTCKSEKNP 305
+N G + +N +K+ +HRV ER S+ +FV +D V++ P KS++
Sbjct: 251 INCGSYMAHLTNNYYKAPIHRVKWVNAERQSLPFFVNLGYDSVIDPFDPREPNGKSDRE- 309
Query: 306 PKFPPVKYGSYL 317
P+ YG YL
Sbjct: 310 ----PLSYGDYL 317
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 132/312 (42%), Gaps = 54/312 (17%)
Query: 34 LKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGYTPLHDEL 93
+ A D GFFY +NHGI+ + + +Q + F++ + + K + R Y H +
Sbjct: 32 IDAASRDTGFFYAVNHGINVQRL----SQKTKEFHMSITPEEK--WDLAIRAYNKEHQDQ 85
Query: 94 LDPDTQVHGDYKEGYYIGVE-----------VPEGDP-----ESEKPFYGPNVWPAPDIL 137
+ + GYY+ + P P +++ P + NVWP
Sbjct: 86 V----------RAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKH 135
Query: 138 PGWRETMDRFHQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTSD 197
PG+++ ++++ + ++ + + ALAL +FF + + +A++ L+ Y
Sbjct: 136 PGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPY 195
Query: 198 PSKGIYGAGA--------HSDFGLITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGAFI 249
P I A H D LIT+L V LQ+ ++ + ++
Sbjct: 196 PEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQV-----ETAAGYQDIEADDTGYL 250
Query: 250 VNLGDMLERWSNCVFKSTLHRVLGNGRERYSIAYFVEPSHDCVVECL----PTCKSEKNP 305
+N G + +N +K+ +HRV ER S+ +FV +D V++ P KS++
Sbjct: 251 INCGSYMAHLTNNYYKAPIHRVKWVNAERQSLPFFVNLGYDSVIDPFDPREPNGKSDRE- 309
Query: 306 PKFPPVKYGSYL 317
P+ YG YL
Sbjct: 310 ----PLSYGDYL 317
>pdb|2XUB|A Chain A, Human Rpc62 Subunit Structure
pdb|2XV4|S Chain S, Structure Of Human Rpc62 (Partial)
Length = 534
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 117 GDPESEKPFYGP-NVWPAPDILPGWRETMDRFHQEALEVAKVVA 159
G+P++++P Y N P PD W+ +DRFHQ + A V A
Sbjct: 211 GEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSA 254
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 39/269 (14%)
Query: 38 CL-DCGFFYVINHGIS-------QEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGYTPL 89
CL D G FY+ + G++ ++ + + F + + +R RG+T L
Sbjct: 25 CLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVPTMR----RGFTGL 80
Query: 90 HDELLD--PDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETMDRF 147
E +T + DY Y +G N++P+ D W + DR
Sbjct: 81 ESESTAQITNTGSYSDYSMCYSMGT--------------ADNLFPSGDFERIWTQYFDRQ 126
Query: 148 HQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTSDPSKGIYGAGA 207
+ + VA+ V R D + F + EP+ R + +
Sbjct: 127 YTASRAVAREVLRATGTEPDGGVEAF----LDCEPLLRFRYFPQVPEHRSAEEQPLRMAP 182
Query: 208 HSDFGLITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGAFIVNLGDMLERWSNCVFKST 267
H D ++TL+ + + + +P A +V G + + K+
Sbjct: 183 HYDLSMVTLIQQTPCANGFVSLQAEVGGAFTD-LPYRPDAVLVFCGAIATLVTGGQVKAP 241
Query: 268 LHRVLG------NGRERYSIAYFVEPSHD 290
H V G R S +F+ P+ D
Sbjct: 242 RHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 39/269 (14%)
Query: 38 CL-DCGFFYVINHGIS-------QEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGYTPL 89
CL D G FY+ + G++ ++ + + F + + +R RG+T L
Sbjct: 45 CLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVPTMR----RGFTGL 100
Query: 90 HDELLD--PDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETMDRF 147
E +T + DY Y +G N++P+ D W + DR
Sbjct: 101 ESESTAQITNTGSYSDYSMCYSMGT--------------ADNLFPSGDFERIWTQYFDRQ 146
Query: 148 HQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTSDPSKGIYGAGA 207
+ + VA+ V R D + F + EP+ R + +
Sbjct: 147 YTASRAVAREVLRATGTEPDGGVEAF----LDCEPLLRFRYFPQVPEHRSAEEQPLRMAP 202
Query: 208 HSDFGLITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGAFIVNLGDMLERWSNCVFKST 267
H D ++TL+ + + + +P A +V G + + K+
Sbjct: 203 HYDLSMVTLIQQTPCANGFVSLQAEVGGAFTD-LPYRPDAVLVFCGAIATLVTGGQVKAP 261
Query: 268 LHRVLG------NGRERYSIAYFVEPSHD 290
H V G R S +F+ P+ D
Sbjct: 262 RHHVAAPRRDQIAGSSRTSSVFFLRPNAD 290
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 39/269 (14%)
Query: 38 CL-DCGFFYVINHGIS-------QEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGYTPL 89
CL D G FY+ + G++ ++ + + F + + +R RG+T L
Sbjct: 25 CLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRAVTSPVPTMR----RGFTGL 80
Query: 90 HDELLD--PDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETMDRF 147
E +T + DY Y +G N++P+ D W + DR
Sbjct: 81 ESESTAQITNTGSYSDYSMCYSMGT--------------ADNLFPSGDFERIWTQYFDRQ 126
Query: 148 HQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTSDPSKGIYGAGA 207
+ + VA+ V R D + F + EP+ R + +
Sbjct: 127 YTASRAVAREVLRATGTEPDGGVEAF----LDCEPLLRFRYFPQVPEHRSAEEQPLRMAP 182
Query: 208 HSDFGLITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGAFIVNLGDMLERWSNCVFKST 267
H D ++TL+ + + + +P A +V G + + K+
Sbjct: 183 HYDLSMVTLIQQTPCANGFVSLQAEVGGAFTD-LPYRPDAVLVFCGAIATLVTGGQVKAP 241
Query: 268 LHRVLG------NGRERYSIAYFVEPSHD 290
H V G R S +F+ P+ D
Sbjct: 242 RHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 39/269 (14%)
Query: 38 CL-DCGFFYVINHGIS-------QEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGYTPL 89
CL D G FY+ + G++ ++ + + F + + +R RG+T L
Sbjct: 25 CLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRAVTSPVPTMR----RGFTGL 80
Query: 90 HDELLD--PDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETMDRF 147
E +T + DY Y +G N++P+ D W + DR
Sbjct: 81 ESESTAQITNTGSYSDYSMCYSMGT--------------ADNLFPSGDFERIWTQYFDRQ 126
Query: 148 HQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTSDPSKGIYGAGA 207
+ + VA+ V R D + F + EP+ R + +
Sbjct: 127 YTASRAVAREVLRATGTEPDGGVEAF----LDCEPLLRFRYFPQVPEHRSAEEQPLRMAP 182
Query: 208 HSDFGLITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGAFIVNLGDMLERWSNCVFKST 267
H D ++TL+ + + + +P A +V G + + K+
Sbjct: 183 HYDLSMVTLIQQTPCANGFVSLQAEVGGAFTD-LPYRPDAVLVFCGAIATLVTGGQVKAP 241
Query: 268 LHRVLG------NGRERYSIAYFVEPSHD 290
H V G R S +F+ P+ D
Sbjct: 242 RHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 32/190 (16%)
Query: 38 CL-DCGFFYVINHGIS-------QEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGYTPL 89
CL D G FY+ + G++ ++ + + F + + +R RG+T L
Sbjct: 25 CLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRAVTSPVPTMR----RGFTGL 80
Query: 90 HDELLD--PDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETMDRF 147
E +T + DY Y +G N++P+ D W + DR
Sbjct: 81 ESESTAQITNTGSYSDYSMCYSMGT--------------ADNLFPSGDFERIWTQYFDRQ 126
Query: 148 HQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTSDPSKGIYGAGA 207
+ + VA+ V R D + F + EP+ R + +
Sbjct: 127 YTASRAVAREVLRATGTEPDGGVEAF----LDCEPLLRFRYFPQVPEHRSAEEQPLRMAP 182
Query: 208 HSDFGLITLL 217
H D ++TL+
Sbjct: 183 HYDLSMVTLI 192
>pdb|3R64|A Chain A, Crystal Structure Of A Nad-Dependent Benzaldehyde
Dehydrogenase From Corynebacterium Glutamicum
pdb|3R64|B Chain B, Crystal Structure Of A Nad-Dependent Benzaldehyde
Dehydrogenase From Corynebacterium Glutamicum
pdb|3R64|C Chain C, Crystal Structure Of A Nad-Dependent Benzaldehyde
Dehydrogenase From Corynebacterium Glutamicum
pdb|3R64|D Chain D, Crystal Structure Of A Nad-Dependent Benzaldehyde
Dehydrogenase From Corynebacterium Glutamicum
Length = 508
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 83 HRGYTPLHDELLDPDTQVHGDYKEGYYIGVE-VPEGDPESEKPFYGPNVWPAPDILPGWR 141
H+G + + D VH ++ E + V+ +P GDP +E GP + + L G +
Sbjct: 289 HQGQICMSINRVIVDAAVHDEFLEKFVEAVKNIPTGDPSAEGTLVGPVINDSQ--LSGLK 346
Query: 142 ETMDRFHQEALEV 154
E ++ +E V
Sbjct: 347 EKIELAKKEGATV 359
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,268,884
Number of Sequences: 62578
Number of extensions: 511263
Number of successful extensions: 962
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 932
Number of HSP's gapped (non-prelim): 25
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)