BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019966
         (333 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
 pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
 pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
 pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
 pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
 pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
          Length = 3089

 Score = 28.9 bits (63), Expect = 4.2,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 156  SLICGIEAPENMPRCVNNCHNLETFW 181
            ++  G+E PEN+P+ V+N   +   W
Sbjct: 1047 AIAAGVEGPENLPKVVDNTATVTVDW 1072


>pdb|3TSQ|A Chain A, Crystal Structure Of E. Coli Hypf With Atp And Carbamoyl
           Phosphate
 pdb|3TTD|A Chain A, Crystal Structure Of E. Coli Hypf With Amp-Cpp And
           Carbamoyl Phosphate
          Length = 658

 Score = 28.5 bits (62), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)

Query: 160 GIEAPENMPRCVNNCHNLETFWK---NWHASFNK 190
           G+  P  MPR V+N  +L TFW+   NW A  N+
Sbjct: 542 GVTHPVTMPR-VDNQLDLATFWQQWLNWQAPVNQ 574


>pdb|3TSP|A Chain A, Crystal Structure Of E. Coli Hypf
 pdb|3TSU|A Chain A, Crystal Structure Of E. Coli Hypf With Amp-Pnp And
           Carbamoyl Phosphate
 pdb|3TTC|A Chain A, Crystal Structure Of E. Coli Hypf With Adp And Carbamoyl
           Phosphate
 pdb|3TTF|A Chain A, Crystal Structure Of E. Coli Hypf With Amp And Carbamoyl
           Phosphate
          Length = 657

 Score = 28.5 bits (62), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)

Query: 160 GIEAPENMPRCVNNCHNLETFWK---NWHASFNK 190
           G+  P  MPR V+N  +L TFW+   NW A  N+
Sbjct: 542 GVTHPVTMPR-VDNQLDLATFWQQWLNWQAPVNQ 574


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.142    0.490 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,603,512
Number of Sequences: 62578
Number of extensions: 435404
Number of successful extensions: 873
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 872
Number of HSP's gapped (non-prelim): 3
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.6 bits)