Query 019966
Match_columns 333
No_of_seqs 223 out of 1281
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 09:46:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i2j_A Signaling peptide UA159 15.3 89 0.0031 17.9 1.8 19 175-193 2-20 (26)
2 4hfv_A Uncharacterized protein 12.0 1.6E+02 0.0056 25.5 3.4 44 151-204 102-145 (190)
3 1nh1_A Avirulence B protein; h 5.6 3.5E+02 0.012 25.0 2.8 37 152-195 276-312 (330)
4 1hx1_B BAG-1, BAG-family molec 5.5 1.7E+02 0.0059 23.3 0.7 17 154-170 68-84 (114)
5 3dvk_B Voltage-dependent R-typ 5.0 1.4E+02 0.0047 17.1 -0.2 13 172-184 7-19 (23)
6 1i6z_A BAG-family molecular ch 4.5 2.2E+02 0.0074 23.4 0.6 18 153-170 77-94 (135)
7 1c8c_A DNA-binding protein 7A; 3.9 2.3E+02 0.0078 19.6 0.2 8 1-8 29-36 (64)
8 1lbj_A Motilin; A-helix, B-tur 3.8 4E+02 0.014 15.5 1.2 10 67-76 3-12 (26)
9 2hz8_A De novo designed DIIRON 3.4 2.9E+02 0.0098 22.0 0.4 13 320-332 65-77 (115)
10 3nfg_B DNA-directed RNA polyme 3.3 3E+02 0.01 22.1 0.4 12 159-170 3-14 (123)
No 1
>2i2j_A Signaling peptide UA159SP; helix, signaling protein; NMR {Synthetic}
Probab=15.34 E-value=89 Score=17.88 Aligned_cols=19 Identities=32% Similarity=0.509 Sum_probs=15.0
Q ss_pred cchhHHHhhhhhhHHHHhh
Q 019966 175 HNLETFWKNWHASFNKWLV 193 (333)
Q Consensus 175 ~s~~~fWr~wh~sl~~wl~ 193 (333)
-|++.|.|-+|+|+.+=+-
T Consensus 2 gslstffrlfnrsftqalg 20 (26)
T 2i2j_A 2 GSLSTFFRLFNRSFTQALG 20 (26)
T ss_pred ccHHHHHHHHhHHHHHHhc
Confidence 4778899999999877553
No 2
>4hfv_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, effector, unknown function; HET: CIT; 1.90A {Legionella pneumophila subsp}
Probab=11.98 E-value=1.6e+02 Score=25.49 Aligned_cols=44 Identities=14% Similarity=0.383 Sum_probs=31.2
Q ss_pred HHHHHHHHhCccCCCCCccccccccchhHHHhhhhhhHHHHhhccccccccCcc
Q 019966 151 YFRLWSLICGIEAPENMPRCVNNCHNLETFWKNWHASFNKWLVRYMYIPLGGSQ 204 (333)
Q Consensus 151 ~~~~~A~l~Gi~~PeNf~~~~~~~~s~~~fWr~wh~sl~~wl~~YiY~Plgg~~ 204 (333)
+..+++..+|++- +|.|.. +.+. ..|.+++.|+|.+||.| .-++
T Consensus 102 l~~~L~~~l~i~~-en~Pd~----~Dl~----~~~~Aln~Fmr~~i~~~-~d~r 145 (190)
T 4hfv_A 102 FYKSLTISLDLNK-DNNPNR----EDLA----DMYSALEKFLRSHVYKN-SDPR 145 (190)
T ss_dssp HHHHHHHHTTCBT-TBCCCH----HHHH----HHHHHHHHHHHHTTBGG-GCGG
T ss_pred HHHHHHhhcCCcc-ccCCCH----HHHH----HHHHHHHHHHHHHHhcC-Cccc
Confidence 4556688899984 666642 3333 36899999999999999 3344
No 3
>1nh1_A Avirulence B protein; helix bundle, avirulence protein; 2.20A {Pseudomonas syringae} SCOP: e.45.1.1 PDB: 2nud_A 2nun_A*
Probab=5.58 E-value=3.5e+02 Score=25.00 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=24.5
Q ss_pred HHHHHHHhCccCCCCCccccccccchhHHHhhhhhhHHHHhhcc
Q 019966 152 FRLWSLICGIEAPENMPRCVNNCHNLETFWKNWHASFNKWLVRY 195 (333)
Q Consensus 152 ~~~~A~l~Gi~~PeNf~~~~~~~~s~~~fWr~wh~sl~~wl~~Y 195 (333)
+|..|..=|||+|+ |+.- ....+..+ -++..+|+++|
T Consensus 276 vRsIA~A~GieLPP-mr~G--iVpDlEAm----t~~~e~FV~~Y 312 (330)
T 1nh1_A 276 ARAIASAHGIELPP-FRNG--NVSDIEAM----LSGEEEFVEKY 312 (330)
T ss_dssp HHHHHHHTTCCCCC-BCTT--CCHHHHHH----TSCHHHHHHHT
T ss_pred HHHHHHHhCCCCCC-CcCC--CcccHHHH----hccHHHHHHhh
Confidence 56778999999997 6653 24444444 34666667776
No 4
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=5.50 E-value=1.7e+02 Score=23.27 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=14.2
Q ss_pred HHHHHhCccCCCCCccc
Q 019966 154 LWSLICGIEAPENMPRC 170 (333)
Q Consensus 154 ~~A~l~Gi~~PeNf~~~ 170 (333)
.+=.+|++.+||||..|
T Consensus 68 ~LE~lDsl~i~e~~~~~ 84 (114)
T 1hx1_B 68 ILEEIDTLILPENFKDS 84 (114)
T ss_dssp HHHHHTTCCCCTTCHHH
T ss_pred HHHHhhcccCChhHHHH
Confidence 34789999999999765
No 5
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=4.97 E-value=1.4e+02 Score=17.14 Aligned_cols=13 Identities=8% Similarity=0.153 Sum_probs=8.3
Q ss_pred ccccchhHHHhhh
Q 019966 172 NNCHNLETFWKNW 184 (333)
Q Consensus 172 ~~~~s~~~fWr~w 184 (333)
|.+..+.|+||++
T Consensus 7 YA~llI~d~~r~~ 19 (23)
T 3dvk_B 7 YAAMMIMDYYKQS 19 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445567777765
No 6
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=4.50 E-value=2.2e+02 Score=23.38 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=14.6
Q ss_pred HHHHHHhCccCCCCCccc
Q 019966 153 RLWSLICGIEAPENMPRC 170 (333)
Q Consensus 153 ~~~A~l~Gi~~PeNf~~~ 170 (333)
..+=.+||+.+|+|+..|
T Consensus 77 k~LE~LDs~~ip~~~~~~ 94 (135)
T 1i6z_A 77 KILEEIDTMVLPEQFKDS 94 (135)
T ss_dssp HHHHHHHTCCCCSCCHHH
T ss_pred HHHHHhccccCCccHHHH
Confidence 445789999999998765
No 7
>1c8c_A DNA-binding protein 7A; protein-DNA interaction, protein stability, hyperthermophIle, achaeabacteria, X-RAY crystallography; 1.45A {Sulfolobus solfataricus} SCOP: b.34.13.1 PDB: 1bnz_A 1bbx_C* 1jic_A 1sso_A 1bf4_A* 2cvr_A 1b4o_A 1azp_A* 1azq_A* 1ca5_A 1ca6_A 1sap_A 1wd0_A 1wd1_A 1wtw_A 1wtx_A 1wtq_A 1wtp_A 1wtv_A 1wtr_A ...
Probab=3.87 E-value=2.3e+02 Score=19.59 Aligned_cols=8 Identities=75% Similarity=1.090 Sum_probs=5.5
Q ss_pred Ceeeecch
Q 019966 1 MISFGYDY 8 (333)
Q Consensus 1 ~isf~~d~ 8 (333)
||||.+|=
T Consensus 29 misftydd 36 (64)
T 1c8c_A 29 MISFTYDE 36 (64)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEec
Confidence 67777763
No 8
>1lbj_A Motilin; A-helix, B-turn of type I, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=3.78 E-value=4e+02 Score=15.47 Aligned_cols=10 Identities=20% Similarity=0.707 Sum_probs=8.1
Q ss_pred cccchHHHHH
Q 019966 67 PIISFNAFAS 76 (333)
Q Consensus 67 PI~~y~df~~ 76 (333)
||.+|.|..+
T Consensus 3 PiFt~selqr 12 (26)
T 1lbj_A 3 PIFTYGELQR 12 (26)
T ss_dssp CTTCHHHHHH
T ss_pred ceeeHHHHHH
Confidence 8899998854
No 9
>2hz8_A De novo designed DIIRON protein; four-helix bundle, de novo protein; NMR {Escherichia coli} PDB: 2lfd_A 2lff_A
Probab=3.36 E-value=2.9e+02 Score=22.00 Aligned_cols=13 Identities=8% Similarity=0.342 Sum_probs=8.9
Q ss_pred HHHHHHhhHhhhc
Q 019966 320 KLMFQISDAKQRK 332 (333)
Q Consensus 320 ~~~~~~~~~~~~~ 332 (333)
+++.+||+.|+|+
T Consensus 65 ~iI~eIr~DE~rH 77 (115)
T 2hz8_A 65 QVIDKILEDEEKH 77 (115)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3567777777764
No 10
>3nfg_B DNA-directed RNA polymerase I subunit RPA34; triple barrel, transcription, dimerization; 2.51A {Candida glabrata} PDB: 3nff_B
Probab=3.27 E-value=3e+02 Score=22.14 Aligned_cols=12 Identities=25% Similarity=0.811 Sum_probs=10.1
Q ss_pred hCccCCCCCccc
Q 019966 159 CGIEAPENMPRC 170 (333)
Q Consensus 159 ~Gi~~PeNf~~~ 170 (333)
+++++|.||.+|
T Consensus 3 ~~F~pP~~y~K~ 14 (123)
T 3nfg_B 3 MGYQPPSDYKQC 14 (123)
T ss_dssp -CCCCCTTEEEC
T ss_pred ccccCCCCcccc
Confidence 578999999998
Done!