Query 019966
Match_columns 333
No_of_seqs 223 out of 1281
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 09:46:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019966.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019966hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nekd_ f.21.2.2 (D:) Succinat 15.9 1.6E+02 0.011 20.9 6.2 13 260-272 14-26 (113)
2 d2bs2c1 f.21.2.1 (C:1-254) Fum 15.2 2.5E+02 0.018 22.8 8.2 37 260-297 24-63 (254)
3 d1eysh2 f.23.10.1 (H:7-43) Pho 12.2 1.3E+02 0.0098 17.5 3.7 13 321-333 20-32 (37)
4 d1or7c_ a.180.1.1 (C:) N-termi 6.8 44 0.0032 22.1 -0.2 34 154-187 6-39 (66)
5 d1hx1b_ a.7.7.1 (B:) BAG-famil 5.7 1.2E+02 0.0086 22.3 1.7 19 152-170 66-84 (112)
6 d1f7ua1 a.27.1.1 (A:484-607) A 5.3 1E+02 0.0075 22.2 1.2 12 156-167 113-124 (124)
7 d1nh1a_ e.45.1.1 (A:) Type III 5.0 1.9E+02 0.014 24.2 2.8 37 152-195 249-285 (290)
8 d1q90n_ f.23.27.1 (N:) PetN su 4.6 3.1E+02 0.023 14.9 2.6 17 208-231 11-27 (31)
9 d2hjja1 d.50.3.3 (A:10-75) Hyp 4.1 71 0.0052 21.2 -0.5 16 181-196 41-58 (66)
10 d1bf4a_ b.34.13.1 (A:) DNA-bin 4.0 1E+02 0.0074 19.6 0.2 7 1-7 28-34 (63)
No 1
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=15.90 E-value=1.6e+02 Score=20.88 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=7.5
Q ss_pred hhHHHHHHHHHHH
Q 019966 260 FLVRELRAFAGSI 272 (333)
Q Consensus 260 ~~~R~~~a~~~~~ 272 (333)
++.+|+.|+.-.+
T Consensus 14 W~~qRvSAv~l~~ 26 (113)
T d1nekd_ 14 FILVRATAIVLTL 26 (113)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455577666554
No 2
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=15.24 E-value=2.5e+02 Score=22.81 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHH---HHHHHhhhhcCcchHHHHHH
Q 019966 260 FLVRELRAFAGSITITCL---MIANLVGYVIGPSGVNWLMS 297 (333)
Q Consensus 260 ~~~R~~~a~~~~~~~~~~---~~~nlvgf~~g~~~~~~~~~ 297 (333)
...|++.++.|.+-..++ |+.|+.+ ..|+|.++...+
T Consensus 24 ~~l~~l~slTGlvL~lFl~~Hm~~n~~i-l~g~eafn~~a~ 63 (254)
T d2bs2c1 24 AKLDWWQSATGLFLGLFMIGHMFFVSTI-LLGDNVMLWVTK 63 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGG-GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHH
Confidence 356778888888743333 4455554 678998888764
No 3
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=12.21 E-value=1.3e+02 Score=17.55 Aligned_cols=13 Identities=15% Similarity=0.386 Sum_probs=10.3
Q ss_pred HHHHHhhHhhhcC
Q 019966 321 LMFQISDAKQRKQ 333 (333)
Q Consensus 321 ~~~~~~~~~~~~~ 333 (333)
+++..|.+.||+|
T Consensus 20 Li~YL~rE~~REG 32 (37)
T d1eysh2 20 LIIYLRREDKREG 32 (37)
T ss_dssp HHHHHHHHTTSSS
T ss_pred HHHHHHhcccccC
Confidence 4778888888886
No 4
>d1or7c_ a.180.1.1 (C:) N-terminal, cytoplasmic domain of anti-sigmaE factor RseA {Escherichia coli [TaxId: 562]}
Probab=6.78 E-value=44 Score=22.11 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=20.3
Q ss_pred HHHHHhCccCCCCCccccccccchhHHHhhhhhh
Q 019966 154 LWSLICGIEAPENMPRCVNNCHNLETFWKNWHAS 187 (333)
Q Consensus 154 ~~A~l~Gi~~PeNf~~~~~~~~s~~~fWr~wh~s 187 (333)
..|++||=-......+-+......++.|+|+|.-
T Consensus 6 lSAL~DgE~~~~el~~~l~~d~e~~~~W~~Yhli 39 (66)
T d1or7c_ 6 LSALMDGETLDSELLNELAHNPEMQKTWESYHLI 39 (66)
T ss_dssp HHHHHTTSCCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCChHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3577887322211223234566789999999963
No 5
>d1hx1b_ a.7.7.1 (B:) BAG-family molecular chaperon regulator-1, BAG1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.65 E-value=1.2e+02 Score=22.26 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=15.3
Q ss_pred HHHHHHHhCccCCCCCccc
Q 019966 152 FRLWSLICGIEAPENMPRC 170 (333)
Q Consensus 152 ~~~~A~l~Gi~~PeNf~~~ 170 (333)
-+.+=.+|++.+||||..|
T Consensus 66 Mk~LE~LDsl~lp~~~~~~ 84 (112)
T d1hx1b_ 66 MKILEEIDTLILPENFKDS 84 (112)
T ss_dssp HHHHHHHTTCCCCTTCHHH
T ss_pred HHHHHHhhhccCcHHHHHH
Confidence 3456789999999998765
No 6
>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.26 E-value=1e+02 Score=22.24 Aligned_cols=12 Identities=25% Similarity=0.382 Sum_probs=9.9
Q ss_pred HHHhCccCCCCC
Q 019966 156 SLICGIEAPENM 167 (333)
Q Consensus 156 A~l~Gi~~PeNf 167 (333)
-.++||++||.|
T Consensus 113 L~lLGI~~~e~M 124 (124)
T d1f7ua1 113 MRLLGLTPVERM 124 (124)
T ss_dssp HHHHTCCCCSCC
T ss_pred hhhcCCCccccC
Confidence 368999999976
No 7
>d1nh1a_ e.45.1.1 (A:) Type III effector AvrB {Pseudomonas syringae [TaxId: 317]}
Probab=4.99 E-value=1.9e+02 Score=24.19 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=24.1
Q ss_pred HHHHHHHhCccCCCCCccccccccchhHHHhhhhhhHHHHhhcc
Q 019966 152 FRLWSLICGIEAPENMPRCVNNCHNLETFWKNWHASFNKWLVRY 195 (333)
Q Consensus 152 ~~~~A~l~Gi~~PeNf~~~~~~~~s~~~fWr~wh~sl~~wl~~Y 195 (333)
+|..|..=|||+|+ |+.- ....+..+ -+++.+|+++|
T Consensus 249 ~RsIA~A~GidLPP-~r~G--iVpDiEAm----~~~~e~FV~~Y 285 (290)
T d1nh1a_ 249 ARAIASAHGIELPP-FRNG--NVSDIEAM----LSGEEEFVEKY 285 (290)
T ss_dssp HHHHHHHTTCCCCC-BCTT--CCHHHHHH----TSCHHHHHHHT
T ss_pred HHHHHHHhCCCCCC-CcCC--CCccHHHH----hccHHHHHHhh
Confidence 56778899999997 6543 23444443 34666666666
No 8
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.56 E-value=3.1e+02 Score=14.95 Aligned_cols=17 Identities=24% Similarity=0.626 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHH
Q 019966 208 YNIWAIFTFVAVWHDLEWKLLSWA 231 (333)
Q Consensus 208 ~~~~~~f~~~~lWHg~~~~~~~Wg 231 (333)
.+++++|.|+ ..+++||
T Consensus 11 aa~~atfsfs-------lslvvwg 27 (31)
T d1q90n_ 11 AATCVMFSFS-------LSLVVWG 27 (31)
T ss_dssp HHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHhheee-------EEEEEEe
Confidence 4556666543 4556665
No 9
>d2hjja1 d.50.3.3 (A:10-75) Hypothetical protein YkfF {Escherichia coli [TaxId: 562]}
Probab=4.08 E-value=71 Score=21.22 Aligned_cols=16 Identities=31% Similarity=0.935 Sum_probs=0.0
Q ss_pred Hhhhh--hhHHHHhhccc
Q 019966 181 WKNWH--ASFNKWLVRYM 196 (333)
Q Consensus 181 Wr~wh--~sl~~wl~~Yi 196 (333)
||.|| ..-..||.+||
T Consensus 41 WR~wNfEp~Ag~~lNryi 58 (66)
T d2hjja1 41 WRAWNFEPDAGEGLNRYI 58 (66)
T ss_dssp EEEESSSTTHHHHHHHHH
T ss_pred EEEeccCCCHHHHHHHHH
No 10
>d1bf4a_ b.34.13.1 (A:) DNA-binding protein {Archaeon Sulfolobus solfataricus, Sso7d [TaxId: 2287]}
Probab=4.03 E-value=1e+02 Score=19.65 Aligned_cols=7 Identities=86% Similarity=1.374 Sum_probs=0.0
Q ss_pred Ceeeecc
Q 019966 1 MISFGYD 7 (333)
Q Consensus 1 ~isf~~d 7 (333)
||||.+|
T Consensus 28 mvsftyd 34 (63)
T d1bf4a_ 28 MISFTYD 34 (63)
T ss_dssp EEEEEEE
T ss_pred eEEEEEe
Done!