Query 019968
Match_columns 333
No_of_seqs 265 out of 1905
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:58:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01802 AN1_N ubiquitin-like d 99.8 8.9E-19 1.9E-23 143.6 9.8 93 91-185 9-101 (103)
2 cd01807 GDX_N ubiquitin-like d 99.7 3.7E-18 7.9E-23 131.2 8.2 73 110-184 1-73 (74)
3 cd01793 Fubi Fubi ubiquitin-li 99.7 3.3E-17 7.2E-22 125.9 8.3 72 110-185 1-72 (74)
4 cd01797 NIRF_N amino-terminal 99.7 4.8E-17 1E-21 126.8 7.7 74 110-185 1-76 (78)
5 PTZ00044 ubiquitin; Provisiona 99.7 8.9E-17 1.9E-21 123.6 8.5 74 110-185 1-74 (76)
6 cd01798 parkin_N amino-termina 99.7 1.7E-16 3.6E-21 120.6 7.6 70 112-183 1-70 (70)
7 cd01807 GDX_N ubiquitin-like d 99.7 1.5E-16 3.3E-21 122.1 7.4 73 34-107 1-74 (74)
8 cd01810 ISG15_repeat2 ISG15 ub 99.7 2.5E-16 5.4E-21 121.1 8.1 72 112-185 1-72 (74)
9 cd01793 Fubi Fubi ubiquitin-li 99.7 2.2E-16 4.7E-21 121.4 7.5 74 34-109 1-74 (74)
10 KOG0003 Ubiquitin/60s ribosoma 99.6 1.9E-17 4.1E-22 134.2 -0.0 74 110-185 1-74 (128)
11 cd01805 RAD23_N Ubiquitin-like 99.6 8E-16 1.7E-20 118.4 8.9 74 110-185 1-76 (77)
12 cd01806 Nedd8 Nebb8-like ubiq 99.6 8.1E-16 1.8E-20 117.6 8.8 74 110-185 1-74 (76)
13 PTZ00044 ubiquitin; Provisiona 99.6 7E-16 1.5E-20 118.6 7.7 74 34-108 1-75 (76)
14 cd01803 Ubiquitin Ubiquitin. U 99.6 9.6E-16 2.1E-20 117.2 8.4 74 110-185 1-74 (76)
15 cd01794 DC_UbP_C dendritic cel 99.6 7.8E-16 1.7E-20 117.6 7.4 68 113-182 2-69 (70)
16 cd01791 Ubl5 UBL5 ubiquitin-li 99.6 9.7E-16 2.1E-20 118.1 7.3 70 110-181 2-71 (73)
17 cd01802 AN1_N ubiquitin-like d 99.6 1.4E-15 2.9E-20 124.8 8.3 77 31-108 25-102 (103)
18 cd01809 Scythe_N Ubiquitin-lik 99.6 1.8E-15 3.9E-20 114.5 8.2 72 110-183 1-72 (72)
19 KOG0004 Ubiquitin/40S ribosoma 99.6 5.3E-16 1.1E-20 133.7 4.6 74 110-185 1-74 (156)
20 cd01797 NIRF_N amino-terminal 99.6 1.7E-15 3.8E-20 118.0 6.9 73 34-107 1-76 (78)
21 cd01804 midnolin_N Ubiquitin-l 99.6 3E-15 6.4E-20 116.5 8.0 74 109-185 1-74 (78)
22 KOG0005 Ubiquitin-like protein 99.6 9E-16 2E-20 112.1 4.1 70 110-181 1-70 (70)
23 cd01808 hPLIC_N Ubiquitin-like 99.6 3.9E-15 8.4E-20 113.4 7.7 71 110-183 1-71 (71)
24 cd01806 Nedd8 Nebb8-like ubiq 99.6 4.7E-15 1E-19 113.3 7.8 74 34-108 1-75 (76)
25 cd01803 Ubiquitin Ubiquitin. U 99.6 4.2E-15 9.1E-20 113.6 7.5 75 34-109 1-76 (76)
26 cd01792 ISG15_repeat1 ISG15 ub 99.6 3.6E-15 7.9E-20 116.4 7.0 73 110-184 3-77 (80)
27 cd01810 ISG15_repeat2 ISG15 ub 99.6 3.8E-15 8.2E-20 114.5 6.7 72 36-108 1-73 (74)
28 PF00240 ubiquitin: Ubiquitin 99.6 1.3E-14 2.8E-19 109.3 8.6 68 115-184 1-68 (69)
29 cd01791 Ubl5 UBL5 ubiquitin-li 99.6 7.7E-15 1.7E-19 113.1 6.9 71 33-104 1-72 (73)
30 cd01796 DDI1_N DNA damage indu 99.6 1.1E-14 2.3E-19 111.4 7.3 67 112-180 1-69 (71)
31 cd01804 midnolin_N Ubiquitin-l 99.5 1.3E-14 2.8E-19 113.0 7.7 75 33-109 1-76 (78)
32 cd01798 parkin_N amino-termina 99.5 1E-14 2.3E-19 110.7 6.5 69 36-105 1-70 (70)
33 cd01805 RAD23_N Ubiquitin-like 99.5 1.8E-14 3.8E-19 110.9 7.7 72 34-106 1-75 (77)
34 cd01809 Scythe_N Ubiquitin-lik 99.5 2E-14 4.3E-19 108.8 7.4 71 34-105 1-72 (72)
35 cd01794 DC_UbP_C dendritic cel 99.5 1.6E-14 3.5E-19 110.3 6.6 67 37-104 2-69 (70)
36 cd01800 SF3a120_C Ubiquitin-li 99.5 4.4E-14 9.5E-19 109.2 6.8 70 39-109 4-73 (76)
37 KOG0003 Ubiquitin/60s ribosoma 99.5 4.2E-15 9.1E-20 120.6 0.8 75 34-109 1-76 (128)
38 PF00240 ubiquitin: Ubiquitin 99.5 1E-13 2.2E-18 104.4 8.0 66 40-106 3-68 (69)
39 cd01800 SF3a120_C Ubiquitin-li 99.5 8.8E-14 1.9E-18 107.5 7.4 67 117-185 5-71 (76)
40 cd01790 Herp_N Homocysteine-re 99.5 8.1E-14 1.8E-18 108.9 6.9 72 110-182 2-78 (79)
41 cd01792 ISG15_repeat1 ISG15 ub 99.5 8.9E-14 1.9E-18 108.6 6.7 72 33-105 2-76 (80)
42 cd01808 hPLIC_N Ubiquitin-like 99.5 9.8E-14 2.1E-18 105.7 6.7 70 34-105 1-71 (71)
43 cd01813 UBP_N UBP ubiquitin pr 99.5 1.3E-13 2.8E-18 106.5 7.3 69 34-103 1-72 (74)
44 cd01812 BAG1_N Ubiquitin-like 99.5 1.7E-13 3.6E-18 103.6 7.3 70 110-182 1-70 (71)
45 cd01812 BAG1_N Ubiquitin-like 99.5 1.7E-13 3.6E-18 103.6 7.0 70 34-104 1-70 (71)
46 KOG0004 Ubiquitin/40S ribosoma 99.4 5.3E-14 1.2E-18 121.4 3.2 75 34-109 1-76 (156)
47 cd01796 DDI1_N DNA damage indu 99.4 2.5E-13 5.3E-18 103.8 6.5 67 36-103 1-70 (71)
48 KOG0005 Ubiquitin-like protein 99.4 9.3E-14 2E-18 101.6 3.7 69 34-103 1-70 (70)
49 cd01763 Sumo Small ubiquitin-r 99.4 1.2E-12 2.6E-17 103.9 8.9 77 107-185 9-85 (87)
50 cd01763 Sumo Small ubiquitin-r 99.3 4.9E-12 1.1E-16 100.4 9.1 79 29-108 7-86 (87)
51 TIGR00601 rad23 UV excision re 99.3 2.2E-12 4.7E-17 127.6 8.5 74 110-185 1-77 (378)
52 cd01799 Hoil1_N Ubiquitin-like 99.3 2.3E-12 4.9E-17 99.8 6.7 69 35-104 2-74 (75)
53 smart00213 UBQ Ubiquitin homol 99.3 3.9E-12 8.4E-17 93.3 6.6 64 110-176 1-64 (64)
54 cd01790 Herp_N Homocysteine-re 99.3 2.8E-12 6E-17 100.3 6.1 71 33-104 1-78 (79)
55 cd01813 UBP_N UBP ubiquitin pr 99.3 5.9E-12 1.3E-16 97.2 7.4 69 111-182 2-73 (74)
56 cd01815 BMSC_UbP_N Ubiquitin-l 99.3 3.5E-12 7.6E-17 98.6 5.2 54 128-182 19-74 (75)
57 smart00213 UBQ Ubiquitin homol 99.3 9.7E-12 2.1E-16 91.2 6.8 64 34-98 1-64 (64)
58 cd01799 Hoil1_N Ubiquitin-like 99.3 8.5E-12 1.8E-16 96.6 6.6 65 115-182 8-74 (75)
59 cd01814 NTGP5 Ubiquitin-like N 99.2 9.4E-12 2E-16 102.7 5.5 75 111-185 6-92 (113)
60 TIGR00601 rad23 UV excision re 99.2 4.2E-11 9.1E-16 118.5 7.2 73 34-107 1-77 (378)
61 cd01815 BMSC_UbP_N Ubiquitin-l 99.2 3.1E-11 6.8E-16 93.3 4.4 53 51-104 19-74 (75)
62 cd01795 USP48_C USP ubiquitin- 99.1 1.1E-10 2.4E-15 94.1 5.9 64 43-106 15-78 (107)
63 cd01769 UBL Ubiquitin-like dom 99.1 2.6E-10 5.7E-15 84.6 7.3 67 114-182 2-68 (69)
64 cd01795 USP48_C USP ubiquitin- 99.1 2.8E-10 6E-15 91.9 6.5 63 121-185 16-79 (107)
65 KOG0011 Nucleotide excision re 99.0 3.2E-10 7E-15 108.6 6.9 74 110-185 1-76 (340)
66 PF11976 Rad60-SLD: Ubiquitin- 99.0 1E-09 2.2E-14 83.4 8.1 71 110-182 1-72 (72)
67 KOG0010 Ubiquitin-like protein 99.0 4E-10 8.7E-15 112.9 6.1 75 108-185 14-88 (493)
68 KOG0001 Ubiquitin and ubiquiti 99.0 3.1E-09 6.6E-14 78.4 9.0 72 112-185 2-73 (75)
69 cd01789 Alp11_N Ubiquitin-like 99.0 2.9E-09 6.2E-14 84.1 8.6 71 34-104 2-80 (84)
70 cd01769 UBL Ubiquitin-like dom 99.0 1.6E-09 3.4E-14 80.4 6.3 64 40-104 5-68 (69)
71 KOG0010 Ubiquitin-like protein 98.9 1.3E-09 2.9E-14 109.2 6.9 75 32-107 14-88 (493)
72 cd01814 NTGP5 Ubiquitin-like N 98.9 1.1E-09 2.3E-14 90.6 4.7 76 32-108 3-93 (113)
73 PF11976 Rad60-SLD: Ubiquitin- 98.9 6E-09 1.3E-13 79.1 7.5 70 34-104 1-72 (72)
74 KOG0011 Nucleotide excision re 98.8 4.3E-09 9.3E-14 101.0 5.9 73 34-107 1-76 (340)
75 KOG0001 Ubiquitin and ubiquiti 98.7 5.5E-08 1.2E-12 71.6 7.6 71 36-107 2-73 (75)
76 PF14560 Ubiquitin_2: Ubiquiti 98.7 6.5E-08 1.4E-12 76.5 8.2 71 34-104 2-82 (87)
77 cd01789 Alp11_N Ubiquitin-like 98.7 6.4E-08 1.4E-12 76.4 8.1 63 119-183 12-81 (84)
78 cd01788 ElonginB Ubiquitin-lik 98.7 5.8E-08 1.2E-12 80.3 6.5 73 35-108 4-83 (119)
79 PF13881 Rad60-SLD_2: Ubiquiti 98.6 3.6E-07 7.7E-12 76.0 9.6 74 112-185 5-90 (111)
80 KOG4248 Ubiquitin-like protein 98.5 1.9E-07 4.1E-12 100.4 6.6 71 112-185 5-75 (1143)
81 PLN02560 enoyl-CoA reductase 98.4 4.5E-07 9.8E-12 87.8 7.4 70 110-181 1-81 (308)
82 PF14560 Ubiquitin_2: Ubiquiti 98.4 1.2E-06 2.5E-11 69.3 7.8 71 111-183 3-83 (87)
83 cd01788 ElonginB Ubiquitin-lik 98.4 1.1E-06 2.4E-11 72.8 6.9 74 110-185 1-82 (119)
84 KOG4248 Ubiquitin-like protein 98.4 4.8E-07 1E-11 97.3 5.8 72 35-108 4-76 (1143)
85 PLN02560 enoyl-CoA reductase 98.3 1.5E-06 3.1E-11 84.4 6.6 68 34-102 1-80 (308)
86 cd00196 UBQ Ubiquitin-like pro 98.2 9.9E-06 2.1E-10 56.1 7.3 64 117-182 5-68 (69)
87 PF13881 Rad60-SLD_2: Ubiquiti 98.2 1.1E-05 2.3E-10 67.2 8.5 74 33-107 2-90 (111)
88 PF11543 UN_NPL4: Nuclear pore 98.1 6.2E-06 1.3E-10 64.7 5.7 72 32-103 3-78 (80)
89 cd01801 Tsc13_N Ubiquitin-like 98.0 1.1E-05 2.4E-10 62.4 5.2 52 50-102 20-74 (77)
90 cd01811 OASL_repeat1 2'-5' oli 98.0 3.3E-05 7.2E-10 59.4 7.2 71 110-183 1-76 (80)
91 cd00196 UBQ Ubiquitin-like pro 98.0 2.7E-05 5.7E-10 53.9 6.3 63 41-104 6-68 (69)
92 PF11543 UN_NPL4: Nuclear pore 97.9 1.4E-05 3.1E-10 62.7 4.9 70 108-180 3-77 (80)
93 cd01801 Tsc13_N Ubiquitin-like 97.9 2.9E-05 6.4E-10 60.0 6.1 52 127-180 20-74 (77)
94 cd01811 OASL_repeat1 2'-5' oli 97.7 9.5E-05 2.1E-09 56.9 6.5 71 34-105 1-76 (80)
95 KOG0006 E3 ubiquitin-protein l 97.7 4.3E-05 9.4E-10 73.4 5.7 63 120-184 14-77 (446)
96 KOG1872 Ubiquitin-specific pro 97.7 7.9E-05 1.7E-09 75.0 6.3 72 34-106 4-76 (473)
97 KOG0006 E3 ubiquitin-protein l 97.6 0.0001 2.2E-09 70.9 6.0 72 34-106 1-77 (446)
98 KOG3493 Ubiquitin-like protein 97.3 0.0001 2.3E-09 55.2 1.1 68 35-103 3-71 (73)
99 KOG4495 RNA polymerase II tran 97.1 0.00086 1.9E-08 54.1 5.2 60 34-94 3-64 (110)
100 PF11470 TUG-UBL1: GLUT4 regul 96.8 0.0039 8.4E-08 47.1 5.7 64 38-102 2-65 (65)
101 KOG4495 RNA polymerase II tran 96.4 0.0038 8.1E-08 50.5 4.0 52 120-173 12-65 (110)
102 KOG3493 Ubiquitin-like protein 96.3 0.0016 3.5E-08 48.9 1.2 69 111-181 3-71 (73)
103 PF08817 YukD: WXG100 protein 96.2 0.015 3.3E-07 45.0 6.1 68 34-102 3-78 (79)
104 PF11470 TUG-UBL1: GLUT4 regul 96.0 0.027 5.8E-07 42.6 6.5 63 116-180 3-65 (65)
105 PF10302 DUF2407: DUF2407 ubiq 95.9 0.017 3.7E-07 47.0 5.4 51 121-171 13-65 (97)
106 KOG1872 Ubiquitin-specific pro 95.7 0.016 3.6E-07 58.6 5.6 71 112-185 6-77 (473)
107 PF00789 UBX: UBX domain; Int 95.7 0.067 1.5E-06 41.3 7.9 71 108-180 5-80 (82)
108 PF08817 YukD: WXG100 protein 95.7 0.037 8.1E-07 42.8 6.2 70 111-180 4-78 (79)
109 KOG1769 Ubiquitin-like protein 95.7 0.082 1.8E-06 43.0 8.3 77 31-108 18-95 (99)
110 PF00789 UBX: UBX domain; Int 95.6 0.085 1.8E-06 40.7 8.1 73 31-103 4-81 (82)
111 KOG0013 Uncharacterized conser 95.5 0.018 3.8E-07 52.9 4.5 66 37-103 151-216 (231)
112 KOG1769 Ubiquitin-like protein 95.5 0.12 2.7E-06 42.0 8.7 73 110-184 21-93 (99)
113 KOG3206 Alpha-tubulin folding 95.0 0.058 1.3E-06 49.4 6.1 103 34-139 2-119 (234)
114 PF10302 DUF2407: DUF2407 ubiq 94.9 0.053 1.1E-06 44.1 5.1 51 43-94 12-66 (97)
115 smart00166 UBX Domain present 94.9 0.14 2.9E-06 39.6 7.2 70 109-180 4-78 (80)
116 KOG2381 Phosphatidylinositol 4 94.9 0.012 2.5E-07 56.7 1.4 40 263-303 246-285 (286)
117 PF13019 Telomere_Sde2: Telome 94.6 0.15 3.2E-06 45.2 7.6 73 110-184 1-85 (162)
118 cd01770 p47_UBX p47-like ubiqu 94.6 0.17 3.8E-06 39.4 7.2 68 110-178 5-75 (79)
119 PF13019 Telomere_Sde2: Telome 94.5 0.13 2.8E-06 45.6 6.8 75 34-108 1-87 (162)
120 COG5417 Uncharacterized small 94.4 0.21 4.5E-06 38.8 7.0 69 33-102 4-80 (81)
121 KOG0013 Uncharacterized conser 94.0 0.082 1.8E-06 48.6 4.7 61 118-180 155-215 (231)
122 cd01772 SAKS1_UBX SAKS1-like U 93.7 0.4 8.7E-06 37.1 7.5 68 110-180 5-77 (79)
123 smart00166 UBX Domain present 93.7 0.41 8.8E-06 37.0 7.5 71 32-102 3-78 (80)
124 cd01767 UBX UBX (ubiquitin reg 93.5 0.49 1.1E-05 36.2 7.7 66 111-180 4-74 (77)
125 cd01770 p47_UBX p47-like ubiqu 93.5 0.37 7.9E-06 37.6 7.0 68 33-100 4-75 (79)
126 PF14533 USP7_C2: Ubiquitin-sp 93.4 0.71 1.5E-05 42.5 9.9 112 32-146 19-159 (213)
127 cd01774 Faf1_like2_UBX Faf1 ik 92.7 0.75 1.6E-05 36.4 7.8 70 108-180 3-82 (85)
128 PF14836 Ubiquitin_3: Ubiquiti 92.5 0.51 1.1E-05 37.8 6.6 66 43-109 14-84 (88)
129 cd01767 UBX UBX (ubiquitin reg 91.6 1.1 2.4E-05 34.2 7.5 65 34-99 3-72 (77)
130 cd01773 Faf1_like1_UBX Faf1 ik 91.4 1.3 2.8E-05 35.0 7.6 70 110-182 6-80 (82)
131 KOG1639 Steroid reductase requ 91.2 0.26 5.7E-06 46.5 4.1 68 34-102 1-76 (297)
132 KOG1639 Steroid reductase requ 91.2 0.38 8.3E-06 45.4 5.2 69 110-180 1-76 (297)
133 cd01772 SAKS1_UBX SAKS1-like U 90.2 1.5 3.3E-05 33.9 7.0 69 33-102 4-77 (79)
134 COG5417 Uncharacterized small 89.7 2 4.3E-05 33.4 7.1 66 115-180 12-80 (81)
135 PF15044 CLU_N: Mitochondrial 89.7 0.63 1.4E-05 36.0 4.5 58 126-185 1-60 (76)
136 cd01771 Faf1_UBX Faf1 UBX doma 89.5 2.5 5.5E-05 32.9 7.8 72 32-104 3-79 (80)
137 COG5227 SMT3 Ubiquitin-like pr 88.6 1.5 3.4E-05 35.2 6.0 73 31-104 22-95 (103)
138 PF15044 CLU_N: Mitochondrial 88.4 0.65 1.4E-05 36.0 3.7 59 49-108 1-61 (76)
139 PF09379 FERM_N: FERM N-termin 88.3 3.8 8.2E-05 31.0 8.0 59 114-173 1-65 (80)
140 PF12436 USP7_ICP0_bdg: ICP0-b 87.7 5.9 0.00013 37.3 10.5 123 30-155 65-223 (249)
141 cd01773 Faf1_like1_UBX Faf1 ik 87.7 4.2 9.2E-05 32.1 8.0 74 31-105 3-81 (82)
142 cd01771 Faf1_UBX Faf1 UBX doma 87.5 3.8 8.2E-05 32.0 7.6 68 110-180 5-77 (80)
143 COG5227 SMT3 Ubiquitin-like pr 87.2 2.5 5.5E-05 34.0 6.4 70 110-181 25-94 (103)
144 cd01774 Faf1_like2_UBX Faf1 ik 86.9 4.4 9.6E-05 32.0 7.8 70 32-102 3-82 (85)
145 KOG0012 DNA damage inducible p 86.5 0.9 2E-05 45.0 4.4 69 41-109 11-80 (380)
146 KOG4583 Membrane-associated ER 85.9 0.32 6.9E-06 47.7 0.9 74 110-183 10-87 (391)
147 cd06406 PB1_P67 A PB1 domain i 84.6 3.9 8.4E-05 32.2 6.3 44 36-80 5-48 (80)
148 cd06407 PB1_NLP A PB1 domain i 84.4 4.2 9.2E-05 31.9 6.5 45 34-78 1-46 (82)
149 KOG3206 Alpha-tubulin folding 84.0 2.3 5.1E-05 39.2 5.5 65 122-188 15-86 (234)
150 PF11620 GABP-alpha: GA-bindin 83.8 5.9 0.00013 31.6 6.9 60 44-104 4-63 (88)
151 smart00666 PB1 PB1 domain. Pho 82.6 6.9 0.00015 29.7 7.0 45 34-78 2-46 (81)
152 PF00564 PB1: PB1 domain; Int 78.1 12 0.00025 28.5 6.9 46 33-78 1-47 (84)
153 PRK06437 hypothetical protein; 77.0 14 0.0003 27.7 6.9 56 41-106 9-64 (67)
154 PRK08364 sulfur carrier protei 76.8 18 0.00038 27.2 7.5 61 36-106 5-67 (70)
155 PRK06437 hypothetical protein; 74.0 21 0.00046 26.7 7.2 54 118-182 9-62 (67)
156 PF09379 FERM_N: FERM N-termin 73.5 25 0.00053 26.4 7.6 55 40-95 4-65 (80)
157 cd06408 PB1_NoxR The PB1 domai 73.4 21 0.00046 28.4 7.3 45 33-78 2-46 (86)
158 KOG0012 DNA damage inducible p 73.0 4.8 0.0001 40.0 4.3 67 118-186 11-79 (380)
159 cd01760 RBD Ubiquitin-like dom 72.1 10 0.00022 29.1 5.1 45 112-158 2-46 (72)
160 smart00455 RBD Raf-like Ras-bi 71.8 11 0.00024 28.6 5.3 44 113-158 3-46 (70)
161 cd00754 MoaD Ubiquitin domain 71.4 16 0.00035 27.3 6.2 60 43-108 16-79 (80)
162 PF08337 Plexin_cytopl: Plexin 71.4 11 0.00023 39.8 6.6 66 120-185 202-291 (539)
163 PF11620 GABP-alpha: GA-bindin 71.0 21 0.00046 28.5 6.7 61 121-183 4-64 (88)
164 PF08337 Plexin_cytopl: Plexin 70.8 8.8 0.00019 40.3 5.9 79 31-109 187-293 (539)
165 PRK06488 sulfur carrier protei 68.1 26 0.00056 25.7 6.4 59 38-105 3-61 (65)
166 cd05992 PB1 The PB1 domain is 67.9 20 0.00043 26.9 6.0 44 35-78 2-46 (81)
167 cd06409 PB1_MUG70 The MUG70 pr 64.7 19 0.00041 28.7 5.4 34 113-146 4-37 (86)
168 cd06396 PB1_NBR1 The PB1 domai 64.5 29 0.00064 27.3 6.4 35 35-69 2-38 (81)
169 PF14453 ThiS-like: ThiS-like 64.1 15 0.00033 27.1 4.3 48 46-105 9-56 (57)
170 smart00144 PI3K_rbd PI3-kinase 63.5 53 0.0012 26.8 8.1 74 32-106 16-105 (108)
171 cd00754 MoaD Ubiquitin domain 62.8 37 0.0008 25.4 6.6 56 121-183 17-76 (80)
172 KOG4583 Membrane-associated ER 62.6 3.7 8.1E-05 40.5 1.2 74 31-105 7-87 (391)
173 PF14453 ThiS-like: ThiS-like 62.6 34 0.00073 25.2 5.9 54 110-181 1-54 (57)
174 PF10790 DUF2604: Protein of U 62.5 32 0.00069 26.2 5.9 66 117-184 3-72 (76)
175 cd01760 RBD Ubiquitin-like dom 62.4 22 0.00048 27.3 5.2 40 40-79 7-46 (72)
176 KOG3439 Protein conjugation fa 62.1 34 0.00075 28.6 6.6 52 30-81 27-83 (116)
177 smart00295 B41 Band 4.1 homolo 60.8 64 0.0014 28.2 8.8 63 110-173 4-72 (207)
178 PRK06488 sulfur carrier protei 60.8 43 0.00093 24.5 6.5 57 116-182 4-60 (65)
179 cd00565 ThiS ThiaminS ubiquiti 60.2 28 0.0006 25.5 5.3 60 39-106 3-62 (65)
180 smart00455 RBD Raf-like Ras-bi 59.7 28 0.00061 26.4 5.4 40 40-79 7-46 (70)
181 KOG4250 TANK binding protein k 59.5 27 0.00058 37.9 6.9 67 116-186 321-389 (732)
182 cd06411 PB1_p51 The PB1 domain 58.1 34 0.00073 26.8 5.6 35 44-78 8-42 (78)
183 PRK08364 sulfur carrier protei 57.7 71 0.0015 23.9 7.3 54 118-182 10-65 (70)
184 TIGR02958 sec_mycoba_snm4 secr 57.5 37 0.00081 34.9 7.5 73 35-108 4-83 (452)
185 PLN02799 Molybdopterin synthas 57.3 47 0.001 25.3 6.4 69 34-108 2-81 (82)
186 PF02597 ThiS: ThiS family; I 56.5 55 0.0012 24.1 6.6 62 44-108 13-76 (77)
187 KOG2086 Protein tyrosine phosp 56.2 19 0.00042 36.1 4.9 68 34-101 306-377 (380)
188 smart00666 PB1 PB1 domain. Pho 54.8 50 0.0011 24.8 6.2 38 118-157 9-46 (81)
189 KOG4261 Talin [Cytoskeleton] 54.6 49 0.0011 36.3 7.9 108 35-146 5-121 (1003)
190 KOG2982 Uncharacterized conser 54.5 20 0.00044 35.5 4.7 59 45-103 350-415 (418)
191 TIGR01687 moaD_arch MoaD famil 53.9 79 0.0017 24.3 7.3 61 43-108 16-87 (88)
192 KOG2086 Protein tyrosine phosp 53.7 18 0.00039 36.4 4.3 67 110-178 306-376 (380)
193 KOG4250 TANK binding protein k 53.6 30 0.00065 37.5 6.1 48 34-81 314-363 (732)
194 PF14836 Ubiquitin_3: Ubiquiti 53.1 1.1E+02 0.0024 24.5 8.0 61 121-184 15-81 (88)
195 PRK06083 sulfur carrier protei 52.7 94 0.002 24.4 7.5 65 32-104 15-79 (84)
196 PF11069 DUF2870: Protein of u 52.2 12 0.00027 30.5 2.4 39 153-192 3-41 (98)
197 TIGR01682 moaD molybdopterin c 52.0 69 0.0015 24.2 6.6 60 43-108 16-79 (80)
198 cd06406 PB1_P67 A PB1 domain i 51.6 39 0.00084 26.6 5.0 37 121-159 12-48 (80)
199 PRK05863 sulfur carrier protei 51.4 50 0.0011 24.3 5.5 58 38-104 3-60 (65)
200 TIGR01683 thiS thiamine biosyn 49.6 59 0.0013 23.7 5.6 59 40-106 3-61 (64)
201 cd06409 PB1_MUG70 The MUG70 pr 49.5 41 0.00089 26.8 4.9 38 40-77 8-48 (86)
202 PF02196 RBD: Raf-like Ras-bin 48.8 63 0.0014 24.4 5.7 51 112-164 3-55 (71)
203 PF12754 Blt1: Cell-cycle cont 48.5 5.9 0.00013 38.7 0.0 67 28-95 73-160 (309)
204 cd06398 PB1_Joka2 The PB1 doma 48.5 85 0.0018 25.1 6.7 43 35-77 2-50 (91)
205 smart00295 B41 Band 4.1 homolo 48.2 50 0.0011 28.9 6.0 37 33-69 3-40 (207)
206 PRK05659 sulfur carrier protei 48.0 98 0.0021 22.4 6.6 59 38-104 3-61 (66)
207 cd06407 PB1_NLP A PB1 domain i 45.4 76 0.0016 24.8 5.9 39 116-156 6-45 (82)
208 KOG0007 Splicing factor 3a, su 45.4 11 0.00023 37.2 1.3 57 32-89 280-339 (341)
209 KOG4598 Putative ubiquitin-spe 44.5 99 0.0021 33.9 8.1 85 121-215 878-968 (1203)
210 KOG4572 Predicted DNA-binding 44.4 55 0.0012 36.3 6.3 65 118-184 3-71 (1424)
211 PRK07440 hypothetical protein; 44.0 1.4E+02 0.003 22.5 7.3 61 36-104 5-65 (70)
212 PF00794 PI3K_rbd: PI3-kinase 43.1 1.7E+02 0.0037 23.4 8.0 73 31-104 14-101 (106)
213 PF10790 DUF2604: Protein of U 41.6 82 0.0018 24.0 5.2 64 41-105 4-71 (76)
214 PF11069 DUF2870: Protein of u 40.9 17 0.00036 29.7 1.5 34 220-254 3-42 (98)
215 PF00788 RA: Ras association ( 40.6 1.2E+02 0.0025 23.0 6.3 35 121-155 18-52 (93)
216 PF14533 USP7_C2: Ubiquitin-sp 40.2 30 0.00065 31.7 3.3 39 33-71 115-161 (213)
217 COG2104 ThiS Sulfur transfer p 40.0 1.5E+02 0.0033 22.4 6.6 61 36-104 3-63 (68)
218 KOG2982 Uncharacterized conser 39.3 41 0.00088 33.4 4.1 55 124-180 352-414 (418)
219 PLN02799 Molybdopterin synthas 39.1 1.4E+02 0.0031 22.5 6.5 57 120-182 19-77 (82)
220 smart00144 PI3K_rbd PI3-kinase 37.2 1.9E+02 0.004 23.6 7.3 73 112-184 20-105 (108)
221 cd01817 RGS12_RBD Ubiquitin do 36.1 96 0.0021 24.0 5.0 43 115-159 5-47 (73)
222 PF02597 ThiS: ThiS family; I 35.2 1.1E+02 0.0023 22.5 5.2 63 118-183 11-73 (77)
223 PF12754 Blt1: Cell-cycle cont 34.9 13 0.00028 36.4 0.0 42 129-172 103-159 (309)
224 PF10209 DUF2340: Uncharacteri 33.9 86 0.0019 26.6 4.8 58 126-183 22-108 (122)
225 PRK08053 sulfur carrier protei 33.8 1.9E+02 0.0041 21.1 7.0 60 38-105 3-62 (66)
226 KOG0007 Splicing factor 3a, su 33.4 19 0.0004 35.6 0.9 50 116-167 289-339 (341)
227 PF02196 RBD: Raf-like Ras-bin 32.8 1.4E+02 0.0031 22.5 5.5 40 40-79 8-47 (71)
228 cd05992 PB1 The PB1 domain is 31.9 1.5E+02 0.0032 22.0 5.6 38 118-157 8-46 (81)
229 PRK06944 sulfur carrier protei 31.9 1.9E+02 0.0042 20.7 6.9 60 38-106 3-62 (65)
230 TIGR01682 moaD molybdopterin c 31.6 2.3E+02 0.0049 21.3 7.1 57 121-182 17-75 (80)
231 PRK07696 sulfur carrier protei 31.5 2.2E+02 0.0047 21.1 6.7 59 38-104 3-62 (67)
232 cd06410 PB1_UP2 Uncharacterize 31.2 1.4E+02 0.003 24.2 5.5 37 40-77 20-56 (97)
233 PF14451 Ub-Mut7C: Mut7-C ubiq 31.1 1.5E+02 0.0032 23.2 5.5 53 42-104 22-75 (81)
234 PF00564 PB1: PB1 domain; Int 31.1 1.9E+02 0.0042 21.5 6.1 38 118-157 9-47 (84)
235 PF02505 MCR_D: Methyl-coenzym 31.0 2.7E+02 0.0059 24.6 7.5 111 45-172 6-122 (153)
236 TIGR02958 sec_mycoba_snm4 secr 30.7 1.6E+02 0.0034 30.3 7.1 72 111-183 4-80 (452)
237 cd01817 RGS12_RBD Ubiquitin do 30.7 1.3E+02 0.0028 23.3 4.9 41 40-80 7-47 (73)
238 PF00794 PI3K_rbd: PI3-kinase 29.8 1.2E+02 0.0025 24.4 4.9 74 110-183 17-102 (106)
239 COG0299 PurN Folate-dependent 28.9 94 0.002 28.6 4.5 48 91-144 126-174 (200)
240 PF02017 CIDE-N: CIDE-N domain 28.7 1.5E+02 0.0033 23.1 5.1 48 130-184 21-72 (78)
241 PF13395 HNH_4: HNH endonuclea 28.5 22 0.00047 25.4 0.3 37 222-259 2-38 (54)
242 cd01615 CIDE_N CIDE_N domain, 28.5 1.8E+02 0.004 22.7 5.5 40 122-164 14-55 (78)
243 PTZ00380 microtubule-associate 28.5 1.8E+02 0.0039 24.6 5.9 59 32-91 26-88 (121)
244 cd01768 RA RA (Ras-associating 27.8 2.7E+02 0.0058 21.1 8.1 37 119-155 12-48 (87)
245 PF14451 Ub-Mut7C: Mut7-C ubiq 27.7 2.3E+02 0.0049 22.1 6.0 52 119-181 22-74 (81)
246 cd06410 PB1_UP2 Uncharacterize 27.4 1.9E+02 0.0041 23.4 5.6 40 114-156 17-56 (97)
247 cd06411 PB1_p51 The PB1 domain 27.3 1.2E+02 0.0025 23.9 4.2 35 121-157 8-42 (78)
248 PF12392 DUF3656: Collagenase 27.1 77 0.0017 26.1 3.5 34 268-301 78-114 (122)
249 smart00266 CAD Domains present 26.8 2E+02 0.0043 22.3 5.3 52 122-180 12-67 (74)
250 cd01775 CYR1_RA Ubiquitin doma 26.6 3.1E+02 0.0068 22.4 6.7 36 35-70 4-40 (97)
251 cd06408 PB1_NoxR The PB1 domai 24.8 3.1E+02 0.0066 21.9 6.2 42 113-157 4-46 (86)
252 PRK08453 fliD flagellar cappin 24.8 3.7E+02 0.0079 29.4 8.7 92 35-127 130-237 (673)
253 cd06539 CIDE_N_A CIDE_N domain 24.3 2.1E+02 0.0045 22.5 5.1 46 130-181 21-70 (78)
254 PRK01777 hypothetical protein; 24.3 3.4E+02 0.0073 21.8 6.5 63 33-105 3-76 (95)
255 PF08825 E2_bind: E2 binding d 24.3 1.9E+02 0.0041 22.8 5.0 56 47-103 1-69 (84)
256 smart00314 RA Ras association 24.3 2.7E+02 0.0059 21.2 6.0 38 118-155 14-51 (90)
257 TIGR01687 moaD_arch MoaD famil 24.2 3.2E+02 0.007 20.7 6.9 59 121-183 17-84 (88)
258 cd01764 Urm1 Urm1-like ubuitin 23.8 1.5E+02 0.0032 23.7 4.4 58 47-107 23-92 (94)
259 KOG2561 Adaptor protein NUB1, 23.7 46 0.001 34.4 1.7 75 30-105 34-111 (568)
260 PRK13832 plasmid partitioning 23.6 52 0.0011 34.5 2.1 42 275-316 427-470 (520)
261 KOG2689 Predicted ubiquitin re 23.3 4E+02 0.0087 25.9 7.8 71 32-102 209-284 (290)
262 cd06397 PB1_UP1 Uncharacterize 23.2 2.7E+02 0.0059 22.0 5.5 43 35-77 2-44 (82)
263 PF11834 DUF3354: Domain of un 22.7 1.3E+02 0.0029 22.8 3.7 42 53-102 26-68 (69)
264 TIGR03260 met_CoM_red_D methyl 22.6 4.2E+02 0.0091 23.3 7.2 111 45-172 5-120 (150)
265 cd01818 TIAM1_RBD Ubiquitin do 22.6 2.5E+02 0.0054 22.0 5.2 50 113-164 3-52 (77)
266 KOG3076 5'-phosphoribosylglyci 22.4 1.3E+02 0.0028 27.7 4.1 43 96-144 140-182 (206)
267 PRK09908 xanthine dehydrogenas 22.1 1.6E+02 0.0036 26.0 4.7 32 30-61 3-34 (159)
268 PF04126 Cyclophil_like: Cyclo 21.8 95 0.0021 25.9 3.0 29 34-62 1-29 (120)
269 COG5100 NPL4 Nuclear pore prot 21.7 1.7E+02 0.0036 30.0 5.1 70 34-104 1-78 (571)
270 PF03752 ALF: Short repeats of 21.7 54 0.0012 22.4 1.2 21 293-313 14-37 (43)
271 PF10407 Cytokin_check_N: Cdc1 21.2 2.5E+02 0.0053 21.7 4.9 61 120-183 3-70 (73)
272 PRK06083 sulfur carrier protei 21.1 4E+02 0.0088 20.8 6.3 58 116-182 22-79 (84)
273 cd01787 GRB7_RA RA (RAS-associ 20.3 2.6E+02 0.0056 22.3 5.0 35 112-146 5-39 (85)
274 PF14847 Ras_bdg_2: Ras-bindin 20.1 1.6E+02 0.0034 24.3 3.9 35 112-146 3-37 (105)
No 1
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.78 E-value=8.9e-19 Score=143.57 Aligned_cols=93 Identities=23% Similarity=0.265 Sum_probs=87.6
Q ss_pred ccccccccceeeeeecccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCccccc
Q 019968 91 DYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDI 170 (333)
Q Consensus 91 dygI~~gstV~Lv~rlsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy 170 (333)
-+++-+-+++|+.+++++.|+|+|++.+|++++++|++++||++||++|++++|+| +++|+|+|+|+.|+|+.+|++|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip--~~~QrLi~~Gk~L~D~~tL~dy 86 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIP--VAQQHLIWNNMELEDEYCLNDY 86 (103)
T ss_pred ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC--hHHEEEEECCEECCCCCcHHHc
Confidence 35566678999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred CCCCCCEEEEEeecC
Q 019968 171 CKRNEAVIHLLVRKS 185 (333)
Q Consensus 171 ~I~~gsvIhLv~r~~ 185 (333)
+|+++++||++++..
T Consensus 87 ~I~~~stL~l~~~l~ 101 (103)
T cd01802 87 NISEGCTLKLVLAMR 101 (103)
T ss_pred CCCCCCEEEEEEecC
Confidence 999999999998853
No 2
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.75 E-value=3.7e-18 Score=131.20 Aligned_cols=73 Identities=22% Similarity=0.324 Sum_probs=71.1
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~ 184 (333)
|+|+|++.+|++++++|++++||++||++|++++|+| +++|+|+|+|++|+|+.+|++|||+++++|||++|.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~--~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVP--EEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--HHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 7899999999999999999999999999999999999 999999999999999999999999999999999885
No 3
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.71 E-value=3.3e-17 Score=125.95 Aligned_cols=72 Identities=17% Similarity=0.156 Sum_probs=68.6
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
|+|+||+ +++++++|++++||++||++|++++|+| +++|+|+|+|++|+|+++|++|+++++++||+++|+.
T Consensus 1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip--~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~ 72 (74)
T cd01793 1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGID--VEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLL 72 (74)
T ss_pred CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCC--HHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 7899998 4789999999999999999999999999 9999999999999999999999999999999999864
No 4
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.69 E-value=4.8e-17 Score=126.84 Aligned_cols=74 Identities=26% Similarity=0.266 Sum_probs=70.4
Q ss_pred cceeEeeeCCcE-EEEE-EecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 110 QAITVTTVCGKV-FEFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 110 m~I~Vkt~~Gk~-~~l~-V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
|+|+|++.+|++ ++++ +++++||++||++|++.+|+| +++|+|+|+|+.|+|+.+|++|||+++++|||++|..
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~--~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVE--PECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCC--HHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 799999999997 6895 899999999999999999999 9999999999999999999999999999999999864
No 5
>PTZ00044 ubiquitin; Provisional
Probab=99.69 E-value=8.9e-17 Score=123.57 Aligned_cols=74 Identities=24% Similarity=0.330 Sum_probs=71.6
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
|+|+|++.+|+++++++++++||++||++|++..|+| +++|+|+|+|+.|+|+.+|++|+++++++||+++++.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~--~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGID--VKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLR 74 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--HHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEcc
Confidence 7899999999999999999999999999999999999 9999999999999999999999999999999998853
No 6
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.67 E-value=1.7e-16 Score=120.62 Aligned_cols=70 Identities=21% Similarity=0.343 Sum_probs=67.7
Q ss_pred eeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEee
Q 019968 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (333)
Q Consensus 112 I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r 183 (333)
|+|++.+|++++++|++++||++||++|++++|+| +++|+|+|+|++|+|+.+|++|||++++++|++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~--~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVP--PDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCC--HHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 68899999999999999999999999999999999 99999999999999999999999999999999865
No 7
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.67 E-value=1.5e-16 Score=122.14 Aligned_cols=73 Identities=25% Similarity=0.476 Sum_probs=69.7
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968 34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (333)
Q Consensus 34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls 107 (333)
|+|+|+ ..|++++++|++++||.+||.+|++++|+|+++|+|+|+|++|. |+.+|++|||++|++|+|+++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~-d~~~L~~~~i~~~~~l~l~~~~~ 74 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALA-DDKRLSDYSIGPNAKLNLVVRPP 74 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECC-CCCCHHHCCCCCCCEEEEEEcCC
Confidence 789995 89999999999999999999999999999999999999999998 99999999999999999998853
No 8
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.66 E-value=2.5e-16 Score=121.07 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=69.4
Q ss_pred eeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 112 I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
|+|++..|++++++|++++||++||++|++..|+| +++|+|+|+|+.|+|+.+|++|||+++++|+|++++.
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~--~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~ 72 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQ--ADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLR 72 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCC--HHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 68999999999999999999999999999999999 9999999999999999999999999999999998853
No 9
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.66 E-value=2.2e-16 Score=121.39 Aligned_cols=74 Identities=18% Similarity=0.332 Sum_probs=69.3
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 34 M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
|+|+|+. +++++++|++++||+++|.+|++.+|+|+++|+|+|+|++|. |+.+|++|+|++++++|+++|+.++
T Consensus 1 mqi~vk~-~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~-D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRA-QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLE-DDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEEC-CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECC-CCCCHHHcCCCCCCEEEEEEecCCC
Confidence 7899975 478999999999999999999999999999999999999998 9999999999999999999987653
No 10
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.9e-17 Score=134.23 Aligned_cols=74 Identities=32% Similarity=0.447 Sum_probs=71.5
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
|++++++++|++++++|+|++||.+||++|++++|+| +++|+|+|+|++|+|++|+++||++..++||++.|+.
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~--~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~ 74 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCC--HHHHHHHhcccccccCCcccccCccchhhhhhhHHHh
Confidence 6789999999999999999999999999999999999 9999999999999999999999999999999998864
No 11
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.64 E-value=8e-16 Score=118.41 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=71.0
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCC--CCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGRE--FVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gi--p~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
|+|+|++.+|++++++|++++||.+||++|++.+|+ | +++|+|+|+|+.|+|+.+|++||+++|++|+++++++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~--~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~ 76 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYP--PEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP 76 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCC--hhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence 789999999999999999999999999999999998 7 9999999999999999999999999999999988754
No 12
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.64 E-value=8.1e-16 Score=117.58 Aligned_cols=74 Identities=26% Similarity=0.388 Sum_probs=71.2
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
|+|+|++.+|+++.++++++.||++||++|++..|+| ++.|+|+|+|+.|+|+.+|++|++++|++||++++..
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~--~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~ 74 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALR 74 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCC--hhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEcc
Confidence 7899999999999999999999999999999999999 9999999999999999999999999999999998753
No 13
>PTZ00044 ubiquitin; Provisional
Probab=99.63 E-value=7e-16 Score=118.57 Aligned_cols=74 Identities=23% Similarity=0.560 Sum_probs=70.8
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 34 M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
|+|+| +++|+++++++++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|++++|++||+.+++.+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~-d~~~l~~~~i~~~~~i~l~~~~~g 75 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMS-DDLKLSDYKVVPGSTIHMVLQLRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEcc-CCCcHHHcCCCCCCEEEEEEEccC
Confidence 78999 589999999999999999999999999999999999999999998 999999999999999999998765
No 14
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.63 E-value=9.6e-16 Score=117.19 Aligned_cols=74 Identities=32% Similarity=0.447 Sum_probs=71.4
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
|+|+|++.+|+++.++|++++||++||++|++.+|+| ++.|+|+|+|+.|+|+.+|++|+++++++||++++..
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCC--HHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcc
Confidence 7899999999999999999999999999999999999 9999999999999999999999999999999999853
No 15
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.63 E-value=7.8e-16 Score=117.59 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=65.6
Q ss_pred eEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968 113 TVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (333)
Q Consensus 113 ~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~ 182 (333)
-|++.+|++++++|++++||++||++|++.+|+| +++|+|+|+|+.|+|+.+|.+|+++++++||+++
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~--~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVD--PCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCC--HHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 4688999999999999999999999999999999 9999999999999999999999999999999986
No 16
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.62 E-value=9.7e-16 Score=118.09 Aligned_cols=70 Identities=14% Similarity=0.079 Sum_probs=67.8
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv 181 (333)
|.|+|++..|+.+.++|++++||++||++|+++.|+| +++|||+|+|+.|+|+.+|++||+++|++|||.
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~--~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTR--PEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC--hHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 6899999999999999999999999999999999999 999999999999999999999999999999985
No 17
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.62 E-value=1.4e-15 Score=124.77 Aligned_cols=77 Identities=30% Similarity=0.562 Sum_probs=73.1
Q ss_pred CCcEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 31 ~~~M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
...|+|+| ++.|++++++|++++||++||.+|++..|+|+++|+|+|+|+.|. |+.+|++|+|++|++||+.+++.+
T Consensus 25 ~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~-D~~tL~dy~I~~~stL~l~~~l~G 102 (103)
T cd01802 25 YDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELE-DEYCLNDYNISEGCTLKLVLAMRG 102 (103)
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEecCC
Confidence 55899999 489999999999999999999999999999999999999999998 999999999999999999998765
No 18
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.61 E-value=1.8e-15 Score=114.51 Aligned_cols=72 Identities=28% Similarity=0.343 Sum_probs=69.5
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEee
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r 183 (333)
|+|+|++.+|+++++++++++||++||++|++..|+| ++.|+|+|+|+.|+|+.+|++||+++|+++|++.|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIP--VEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 6899999999999999999999999999999999999 99999999999999999999999999999999865
No 19
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=5.3e-16 Score=133.75 Aligned_cols=74 Identities=32% Similarity=0.452 Sum_probs=72.2
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
|+|+|++++|++++++|++++||..+|++||+++||| +++|||+|+|++|+|+++++||+|+..++|||++++.
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp--~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~ 74 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCC--chhhhhhhhhcccccCCccccccccccceEEEEEEec
Confidence 7899999999999999999999999999999999999 9999999999999999999999999999999999965
No 20
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.60 E-value=1.7e-15 Score=118.04 Aligned_cols=73 Identities=15% Similarity=0.346 Sum_probs=68.6
Q ss_pred EEEEE-EeCCeE-EEEE-ecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968 34 ILIFL-SVGGSV-IPMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (333)
Q Consensus 34 M~I~V-t~~G~~-~~i~-V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls 107 (333)
|+|+| ++.|++ ++++ +.+++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|++|+.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~-D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQME-DGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECC-CCCCHHHcCCCCCCEEEEEEecC
Confidence 89999 588886 7895 89999999999999999999999999999999998 99999999999999999999874
No 21
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.60 E-value=3e-15 Score=116.54 Aligned_cols=74 Identities=14% Similarity=0.210 Sum_probs=70.2
Q ss_pred ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
.|+|+|++..|+.++++|+++.||++||++|+++.|++ +++|+|+|+|+.|+|+ +|++||+++|++|||+....
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~--~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~ 74 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVP--KERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVE 74 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCC--hHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecc
Confidence 48899999999999999999999999999999999999 9999999999999998 99999999999999987753
No 22
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=9e-16 Score=112.10 Aligned_cols=70 Identities=26% Similarity=0.384 Sum_probs=67.7
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv 181 (333)
|.|-|+|++|+.+.++++|+++|+.+|++|++++|+| |.+|||+|+|++|.|+.|-++|++..||++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIP--p~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCC--chhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 5688999999999999999999999999999999999 999999999999999999999999999999985
No 23
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.59 E-value=3.9e-15 Score=113.44 Aligned_cols=71 Identities=24% Similarity=0.298 Sum_probs=67.0
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEee
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r 183 (333)
+.|+|++.+|+ .+++++++.||++||++|++..|++ +++|+|+|+|+.|+|+.+|++||+++|++||+++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~--~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKAN--QEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCC--HHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 46899999997 5899999999999999999999998 99999999999999999999999999999999875
No 24
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.58 E-value=4.7e-15 Score=113.34 Aligned_cols=74 Identities=30% Similarity=0.600 Sum_probs=70.3
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 34 M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
|+|+| +++|+++.+++++++||.+||.+|+...|+|++.|+|+|+|+.|. |+.+|++|++++|++||++++.++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~-d~~tl~~~~i~~g~~i~l~~~~~g 75 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DDKTAADYKLEGGSVLHLVLALRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEcc-CCCCHHHcCCCCCCEEEEEEEccC
Confidence 78999 478999999999999999999999999999999999999999998 899999999999999999998765
No 25
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.58 E-value=4.2e-15 Score=113.61 Aligned_cols=75 Identities=36% Similarity=0.619 Sum_probs=70.9
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968 34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
|+|+|+ +.|+.+.+++++++||++||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|++++|++|++.+++.++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~-d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECC-CCCcHHHcCCCCCCEEEEEEEccCC
Confidence 789995 78999999999999999999999999999999999999999998 9999999999999999999987653
No 26
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.58 E-value=3.6e-15 Score=116.41 Aligned_cols=73 Identities=23% Similarity=0.195 Sum_probs=70.5
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEE--EECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL--ICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrL--if~Gk~LeD~~tL~dy~I~~gsvIhLv~r~ 184 (333)
|+|+|++.+|+++.++|+++.||++||.+|++..|+| +++|+| +|+|+.|+|+.+|++||+++|++||+++++
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~--~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVP--AFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCC--HHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 7899999999999999999999999999999999999 999999 899999999999999999999999999884
No 27
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.58 E-value=3.8e-15 Score=114.50 Aligned_cols=72 Identities=24% Similarity=0.392 Sum_probs=68.1
Q ss_pred EEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 36 I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
|+| ++.|+++++++++++||++||.+|++..|+|+++|+|+|+|+.|. |+.+|++|||+++++++|.+++.+
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~-D~~tL~~~~i~~~~tl~l~~~l~g 73 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPME-DEHPLGEYGLKPGCTVFMNLRLRG 73 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECC-CCCCHHHcCCCCCCEEEEEEEccC
Confidence 578 488999999999999999999999999999999999999999998 999999999999999999988754
No 28
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.56 E-value=1.3e-14 Score=109.30 Aligned_cols=68 Identities=31% Similarity=0.528 Sum_probs=65.5
Q ss_pred eeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968 115 TTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 115 kt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~ 184 (333)
||.+|+.++++|++++||.+||++|++..|+| ++.|+|+|+|+.|+|+.+|++|++++|++|+++.++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~--~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIP--PEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTST--GGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccc--cccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 57899999999999999999999999999999 999999999999999999999999999999998874
No 29
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.56 E-value=7.7e-15 Score=113.07 Aligned_cols=71 Identities=21% Similarity=0.183 Sum_probs=67.1
Q ss_pred cEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 33 ~M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
.|.|+| ++.|+.+.+++++++||++||.+|++..|+|+++|+|+|+|+.|. |+.+|++|||++|++|||..
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~-D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFK-DHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCC-CCCCHHHcCCCCCCEEEEEe
Confidence 488999 478999999999999999999999999999999999999999998 99999999999999999863
No 30
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.55 E-value=1.1e-14 Score=111.40 Aligned_cols=67 Identities=25% Similarity=0.317 Sum_probs=63.8
Q ss_pred eeEeee-CCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCC-CcccccCCCCCCEEEE
Q 019968 112 ITVTTV-CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ-RLITDICKRNEAVIHL 180 (333)
Q Consensus 112 I~Vkt~-~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~-~tL~dy~I~~gsvIhL 180 (333)
|+|++. +|+++.++|++++||++||++|++.+|+| +++|+|+|+|+.|+|+ .+|++||+++|++|||
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip--~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIP--ASQQQLIYNGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCC--HHHeEEEECCeEccCCcccHHHcCCCCCCEEEE
Confidence 578999 99999999999999999999999999999 9999999999999887 6899999999999997
No 31
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.55 E-value=1.3e-14 Score=112.95 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=70.0
Q ss_pred cEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968 33 SILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 33 ~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
.|+|+|+ +.|+.+++++++++||++||.+|+++.++++++|+|+|+|+.|. |+ +|++|||++|++|+|+..+.++
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~-d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLS-SG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCC-CC-cHHHcCCCCCCEEEEEeecccc
Confidence 4899995 78999999999999999999999999999999999999999998 77 9999999999999999877654
No 32
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.54 E-value=1e-14 Score=110.70 Aligned_cols=69 Identities=22% Similarity=0.470 Sum_probs=65.2
Q ss_pred EEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeee
Q 019968 36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (333)
Q Consensus 36 I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~r 105 (333)
|+| +..|+++++++++++||+++|.+|+++.|+|+++|+|+|+|++|. |+.+|++|||++|++||++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~-d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELR-NTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEeC
Confidence 467 478999999999999999999999999999999999999999998 999999999999999999864
No 33
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.54 E-value=1.8e-14 Score=110.92 Aligned_cols=72 Identities=19% Similarity=0.438 Sum_probs=68.4
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCC--CCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGF--FVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 34 M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gi--p~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
|+|+| +.+|+++++++++++||.+||.+|++.+|+ |+++|+|+|+|+.|. |+.+|++|||++|++|+++++.
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~-d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILK-DDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEcc-CCCCHHHcCCCCCCEEEEEEec
Confidence 78999 589999999999999999999999999999 999999999999998 9999999999999999988764
No 34
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.53 E-value=2e-14 Score=108.77 Aligned_cols=71 Identities=28% Similarity=0.482 Sum_probs=67.4
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeee
Q 019968 34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (333)
Q Consensus 34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~r 105 (333)
|+|+|+ +.|+++++++++++||.+||.+|++.+|+|++.|+|+|+|+.|. |+.+|++||+++|+++|++.|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~-d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLK-DDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECC-CcCcHHHCCCCCCCEEEEEeC
Confidence 789995 78999999999999999999999999999999999999999998 899999999999999999864
No 35
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.53 E-value=1.6e-14 Score=110.34 Aligned_cols=67 Identities=18% Similarity=0.352 Sum_probs=63.5
Q ss_pred EEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968 37 FLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 37 ~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
.|+ ++|+++++++++++||+++|.+|++..|+|+++|+|+|+|+.|+ |+.+|.+|+|++|++||+++
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~-D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLT-DKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECC-CCCCHHHcCCCCCCEEEEEe
Confidence 454 68999999999999999999999999999999999999999998 99999999999999999975
No 36
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.50 E-value=4.4e-14 Score=109.24 Aligned_cols=70 Identities=27% Similarity=0.476 Sum_probs=66.2
Q ss_pred EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968 39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 39 t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
+++|+++++++++++||++||.+|+..+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|++++++.++
T Consensus 4 ~l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~-d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 4 KLNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIK-DSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred ccCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcC-CCCcHHHcCCCCCCEEEEEEecCCC
Confidence 468999999999999999999999999999999999999999998 8999999999999999999987653
No 37
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=4.2e-15 Score=120.63 Aligned_cols=75 Identities=36% Similarity=0.622 Sum_probs=71.3
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 34 M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
|++++ ++.|++.+++++|++||..+|.+|+...|+|+++|+|+|+|++|+ |+.|+++|||+..+|+|+++++.++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LE-D~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccc-cCCcccccCccchhhhhhhHHHhcC
Confidence 45666 899999999999999999999999999999999999999999998 9999999999999999999998876
No 38
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.49 E-value=1e-13 Score=104.38 Aligned_cols=66 Identities=30% Similarity=0.661 Sum_probs=63.6
Q ss_pred eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 40 VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 40 ~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
++|+.++++|++++||.+||.+|+...++|++.|+|+|+|+.|. |+.+|.+|||++|++|+|..++
T Consensus 3 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~-d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 3 LSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELD-DDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEES-TTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeeccc-CcCcHHHcCCCCCCEEEEEEec
Confidence 57899999999999999999999999999999999999999997 9999999999999999998875
No 39
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.48 E-value=8.8e-14 Score=107.54 Aligned_cols=67 Identities=19% Similarity=0.295 Sum_probs=64.1
Q ss_pred eCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 117 ~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
++|++++++|++++||++||++|+..+|+| +++|+|+|+|+.|+|+++|++|++++|++||++++..
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip--~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~ 71 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMP--AGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKER 71 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCC--HHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecC
Confidence 478999999999999999999999999999 9999999999999999999999999999999999864
No 40
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.48 E-value=8.1e-14 Score=108.90 Aligned_cols=72 Identities=18% Similarity=0.210 Sum_probs=63.3
Q ss_pred cceeEeeeCCcEE--EEEEecCCchHHHHHHHHHhcC-CCCCCCceEEEECCeecCCCCcccccC--CCCCCEEEEEe
Q 019968 110 QAITVTTVCGKVF--EFHVERGRNVGYVKQQIAKKGR-EFVDLKNQELICDGEELEDQRLITDIC--KRNEAVIHLLV 182 (333)
Q Consensus 110 m~I~Vkt~~Gk~~--~l~V~~sdTV~~LK~~I~~~~G-ip~~~~~QrLif~Gk~LeD~~tL~dy~--I~~gsvIhLv~ 182 (333)
+.|.||+.+|+++ .+++++++||.+||++|++..+ .| ++++|||||+||.|.|+.+|++|+ +.++.+||||.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~-~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKP-LEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCC-ChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 5689999999984 4555899999999999999875 32 279999999999999999999996 99999999986
No 41
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.47 E-value=8.9e-14 Score=108.56 Aligned_cols=72 Identities=19% Similarity=0.268 Sum_probs=68.3
Q ss_pred cEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEE--EECCeecccCCccccccccccccceeeeee
Q 019968 33 SILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKL--VFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (333)
Q Consensus 33 ~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~L--if~G~~L~~D~~tL~dygI~~gstV~Lv~r 105 (333)
.|+|+|+ +.|+++.+++++++||++||.+|++..|+|+++|+| +|+|+.|. |+.+|++|||++|++|+|+++
T Consensus 2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~-D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQ-DGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCC-CCCCHHHcCCCCCCEEEEEEE
Confidence 4899994 789999999999999999999999999999999999 89999998 999999999999999999987
No 42
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.47 E-value=9.8e-14 Score=105.70 Aligned_cols=70 Identities=19% Similarity=0.290 Sum_probs=64.6
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeee
Q 019968 34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (333)
Q Consensus 34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~r 105 (333)
|+|+|+ ..|+ .++++++++||++||.+|++..|+++.+|+|+|+|+.|. |+.+|++||+++|++||+++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~-d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILK-DTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcC-CCCcHHHcCCCCCCEEEEEEC
Confidence 468884 7776 589999999999999999999999999999999999998 999999999999999999875
No 43
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.47 E-value=1.3e-13 Score=106.46 Aligned_cols=69 Identities=16% Similarity=0.370 Sum_probs=65.7
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEE---CCeecccCCccccccccccccceeee
Q 019968 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF---EGRELARSNSRVRDYGLADGNVLHLV 103 (333)
Q Consensus 34 M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif---~G~~L~~D~~tL~dygI~~gstV~Lv 103 (333)
|.|.|++.|+++++++++++||++||++|++.+|+|+++|+|+| .|+.|. |+.+|++|+|++|+.|+|+
T Consensus 1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~-D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAE-DDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCC-CCcCHHHcCCCCCCEEEEE
Confidence 57889999999999999999999999999999999999999996 899998 9999999999999999886
No 44
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.46 E-value=1.7e-13 Score=103.62 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=66.1
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~ 182 (333)
+.|.|++. |+.++++++++.||++||++|++.+|+| ++.|+|+|+|+.|+|+.+|++||+++|++|+++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~--~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVE--PRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCC--hHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 46889986 9999999999999999999999999999 9999999999999999999999999999999864
No 45
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.46 E-value=1.7e-13 Score=103.63 Aligned_cols=70 Identities=21% Similarity=0.369 Sum_probs=66.2
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 34 M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
|+|+|+..|+.+++++++++||++||.+|+..+|+|+++|+|+|+|+.|. |+.+|.+|||++|++|+++.
T Consensus 1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~-d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERD-DAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccC-ccCcHHHcCCCCCCEEEEec
Confidence 57889888999999999999999999999999999999999999999998 89999999999999998863
No 46
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=5.3e-14 Score=121.40 Aligned_cols=75 Identities=35% Similarity=0.620 Sum_probs=72.1
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 34 M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
|+||| ++.++++++++.+++||..+|++|+...|||+++|+|+|.|++|+ |+++|+||+|+..+++||+++++++
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLe-dgrtlSDY~Iqkestl~l~l~l~Gg 76 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 76 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccc-cCCccccccccccceEEEEEEecCC
Confidence 78999 689999999999999999999999999999999999999999999 9999999999999999999998765
No 47
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.43 E-value=2.5e-13 Score=103.85 Aligned_cols=67 Identities=24% Similarity=0.403 Sum_probs=61.4
Q ss_pred EEEE-e-CCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCC-ccccccccccccceeee
Q 019968 36 IFLS-V-GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSN-SRVRDYGLADGNVLHLV 103 (333)
Q Consensus 36 I~Vt-~-~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~-~tL~dygI~~gstV~Lv 103 (333)
|+|+ . +|+++.+++++++||++||.+|++.+|+|+++|+|+|+|+.|. |+ .+|++|||++|++|+|.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~-D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELV-DNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEcc-CCcccHHHcCCCCCCEEEEe
Confidence 4563 5 8899999999999999999999999999999999999999998 65 78999999999999874
No 48
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=9.3e-14 Score=101.60 Aligned_cols=69 Identities=28% Similarity=0.587 Sum_probs=66.1
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeee
Q 019968 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (333)
Q Consensus 34 M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv 103 (333)
|.|.| +++|+.+.++++|+|+|..+|.+|+++.|+||.+|+|+|.|+++. |+.+-++|++.-|+++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~-DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMN-DDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhcccccc-ccccHHHhhhccceeEeeC
Confidence 67888 699999999999999999999999999999999999999999998 9999999999999999984
No 49
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.40 E-value=1.2e-12 Score=103.88 Aligned_cols=77 Identities=13% Similarity=0.265 Sum_probs=73.1
Q ss_pred ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
+..|.|.|++.+|+...++|.+++++..||.+++++.|+| +++|+|+|+|+.|+++.|+.+|+++++++|++++++.
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~--~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~ 85 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLS--MNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQT 85 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCC--ccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecc
Confidence 4568899999999999999999999999999999999999 9999999999999999999999999999999998753
No 50
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.34 E-value=4.9e-12 Score=100.43 Aligned_cols=79 Identities=15% Similarity=0.348 Sum_probs=73.9
Q ss_pred CCCCcEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968 29 LSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (333)
Q Consensus 29 ~~~~~M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls 107 (333)
.....|+|+| ...|+.+.++|.+++|+..||.+++++.|+|+++|+|+|+|+.|. ++.|+.+|++.+|++|++++++.
T Consensus 7 ~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~-~~~T~~~l~m~d~d~I~v~l~l~ 85 (87)
T cd01763 7 EISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIR-DNQTPDDLGMEDGDEIEVMLEQT 85 (87)
T ss_pred CCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECC-CCCCHHHcCCCCCCEEEEEEecc
Confidence 3577899999 478999999999999999999999999999999999999999998 99999999999999999998875
Q ss_pred c
Q 019968 108 D 108 (333)
Q Consensus 108 d 108 (333)
+
T Consensus 86 G 86 (87)
T cd01763 86 G 86 (87)
T ss_pred c
Confidence 4
No 51
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.34 E-value=2.2e-12 Score=127.64 Aligned_cols=74 Identities=20% Similarity=0.327 Sum_probs=71.0
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcC---CCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGR---EFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~G---ip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
|+|+||+..|+++.++|++++||.+||++|+...| ++ +++|+|+|+|+.|+|+.+|++|+|+++++|++++++.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip--~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~ 77 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYP--VAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKP 77 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCC--hhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccC
Confidence 78999999999999999999999999999999998 88 9999999999999999999999999999999998864
No 52
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.34 E-value=2.3e-12 Score=99.85 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=61.9
Q ss_pred EEEE--E-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccc-cccceeeee
Q 019968 35 LIFL--S-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLA-DGNVLHLVL 104 (333)
Q Consensus 35 ~I~V--t-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~-~gstV~Lv~ 104 (333)
.++| + ..|.++++++.+++||++||.+|+.++|+|+++|+| |+|+.|.+|+.+|++||++ +|+++||.+
T Consensus 2 ~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 2 NVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred EEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 4566 3 467899999999999999999999999999999999 9999997577999999998 889999864
No 53
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.32 E-value=3.9e-12 Score=93.35 Aligned_cols=64 Identities=27% Similarity=0.343 Sum_probs=60.6
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCC
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEA 176 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gs 176 (333)
|+|+|++.+ +.+.++|+++.||++||++|++.+|+| ++.|+|+|+|+.|.|+.+|++|++.+|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~--~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIP--VEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCC--HHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 679999988 789999999999999999999999999 9999999999999999999999999875
No 54
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.32 E-value=2.8e-12 Score=100.26 Aligned_cols=71 Identities=14% Similarity=0.270 Sum_probs=61.7
Q ss_pred cEEEEEE-eCCeE--EEEEecCCCCHHHHHHHHHHhhC--CCCcceEEEECCeecccCCccccccc--cccccceeeee
Q 019968 33 SILIFLS-VGGSV--IPMRVMESDSIASVKLRIQSYNG--FFVKKQKLVFEGRELARSNSRVRDYG--LADGNVLHLVL 104 (333)
Q Consensus 33 ~M~I~Vt-~~G~~--~~i~V~~sdTV~~LK~kI~~~~g--ip~~~Q~Lif~G~~L~~D~~tL~dyg--I~~gstV~Lv~ 104 (333)
.|.|+|+ .+++. +++++++++||.+||.+|++..+ .++++|+|+|+|+.|. |+.+|++|. +.+|.++||+.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLk-D~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLP-DHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeecc-chhhHHHHhhcccCCceEEEEe
Confidence 3788895 67877 55566899999999999999874 4589999999999998 999999996 99999999974
No 55
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.31 E-value=5.9e-12 Score=97.20 Aligned_cols=69 Identities=19% Similarity=0.193 Sum_probs=63.5
Q ss_pred ceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE---CCeecCCCCcccccCCCCCCEEEEEe
Q 019968 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DGEELEDQRLITDICKRNEAVIHLLV 182 (333)
Q Consensus 111 ~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif---~Gk~LeD~~tL~dy~I~~gsvIhLv~ 182 (333)
.|.|+ ..|+++.++|++++||++||++|++.+|+| +++|+|+| .|+.|.|+.+|++|++.+|+.|+|+-
T Consensus 2 ~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp--~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 2 PVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVL--PERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMG 73 (74)
T ss_pred EEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCC--HHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEe
Confidence 46664 478899999999999999999999999999 99999996 99999999999999999999999873
No 56
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.29 E-value=3.5e-12 Score=98.61 Aligned_cols=54 Identities=28% Similarity=0.273 Sum_probs=48.9
Q ss_pred cCCchHHHHHHHHHhc--CCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968 128 RGRNVGYVKQQIAKKG--REFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (333)
Q Consensus 128 ~sdTV~~LK~~I~~~~--Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~ 182 (333)
.++||.+||++|+++. |++ ++++|||+|+|+.|+|++||++|||++|++|||+.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~-~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLP-DPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCC-ChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 4889999999999995 453 28999999999999999999999999999999975
No 57
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.28 E-value=9.7e-12 Score=91.21 Aligned_cols=64 Identities=27% Similarity=0.532 Sum_probs=59.3
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCcccccccccccc
Q 019968 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN 98 (333)
Q Consensus 34 M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gs 98 (333)
|+|+|+..++.+.+++++++||++||.+|+..+|+|+++|+|+|+|+.|. |+.+|.+|||++|+
T Consensus 1 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~-d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLE-DDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECC-CCCCHHHcCCcCCC
Confidence 68999654478999999999999999999999999999999999999998 88999999999875
No 58
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.27 E-value=8.5e-12 Score=96.64 Aligned_cols=65 Identities=17% Similarity=0.066 Sum_probs=59.3
Q ss_pred eeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecC-CCCcccccCCC-CCCEEEEEe
Q 019968 115 TTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELE-DQRLITDICKR-NEAVIHLLV 182 (333)
Q Consensus 115 kt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~Le-D~~tL~dy~I~-~gsvIhLv~ 182 (333)
+..+|++++++|++++||++||++|++++|+| +++|+| |+|+.|. |+++|++||++ +|+++||.+
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip--~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFP--PAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHCcC--HHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 34578899999999999999999999999999 999999 9999995 77999999998 889999864
No 59
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.24 E-value=9.4e-12 Score=102.73 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=61.5
Q ss_pred ceeEeeeCCcEE-EEEEecCCchHHHHHHHHHhc-----CCCCCCCceEEEECCeecCCCCcccccC------CCCCCEE
Q 019968 111 AITVTTVCGKVF-EFHVERGRNVGYVKQQIAKKG-----REFVDLKNQELICDGEELEDQRLITDIC------KRNEAVI 178 (333)
Q Consensus 111 ~I~Vkt~~Gk~~-~l~V~~sdTV~~LK~~I~~~~-----Gip~~~~~QrLif~Gk~LeD~~tL~dy~------I~~gsvI 178 (333)
.|-+|..+|..+ ++.+.+++||++||++|++.+ |+|.++++|+|||+|+.|+|++||++|+ +....|+
T Consensus 6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~Tm 85 (113)
T cd01814 6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITM 85 (113)
T ss_pred EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEE
Confidence 344455566443 677889999999999999544 4555599999999999999999999999 7778999
Q ss_pred EEEeecC
Q 019968 179 HLLVRKS 185 (333)
Q Consensus 179 hLv~r~~ 185 (333)
|+++|.+
T Consensus 86 Hvvlr~~ 92 (113)
T cd01814 86 HVVVQPP 92 (113)
T ss_pred EEEecCC
Confidence 9999964
No 60
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=4.2e-11 Score=118.55 Aligned_cols=73 Identities=16% Similarity=0.433 Sum_probs=68.7
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhC---CCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNG---FFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (333)
Q Consensus 34 M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~g---ip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls 107 (333)
|+|+| ++.|+++.++|++++||.+||.+|+...| +++++|+|+|+|+.|. |+.+|++|+|+++++|+++++..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~-Dd~tL~dy~I~e~~~Ivvmv~k~ 77 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILS-DDKTVREYKIKEKDFVVVMVSKP 77 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECC-CCCcHHHcCCCCCCEEEEEeccC
Confidence 78999 58999999999999999999999999998 9999999999999998 99999999999999999887653
No 61
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.16 E-value=3.1e-11 Score=93.34 Aligned_cols=53 Identities=19% Similarity=0.345 Sum_probs=48.9
Q ss_pred CCCCHHHHHHHHHHhh--CCC-CcceEEEECCeecccCCccccccccccccceeeee
Q 019968 51 ESDSIASVKLRIQSYN--GFF-VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 51 ~sdTV~~LK~kI~~~~--gip-~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
.++||.+||.+|+++. |++ +++|+|+|+|+.|. |+.+|++|||++|++|||+.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~-D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLK-DDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCC-CCCcHHHcCCCCCCEEEEEe
Confidence 4789999999999995 575 99999999999998 99999999999999999974
No 62
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.11 E-value=1.1e-10 Score=94.12 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=59.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 43 SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 43 ~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
...++.|++++||.+||.+|.+.+++++.+|+|+|+|+.|.+|.+||++|||..|++|+|.++.
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 3567889999999999999999999999999999999999988999999999999999998754
No 63
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.10 E-value=2.6e-10 Score=84.62 Aligned_cols=67 Identities=31% Similarity=0.469 Sum_probs=63.0
Q ss_pred EeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968 114 VTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (333)
Q Consensus 114 Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~ 182 (333)
|+..+|+.+.+++.++.||.+||.+|+...|+| ++.|+|+|+|+.|+|+.+|.+|++.++++|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~--~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVP--PEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcC--hHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 566789999999999999999999999999999 9999999999999999999999999999999864
No 64
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.07 E-value=2.8e-10 Score=91.89 Aligned_cols=63 Identities=22% Similarity=0.146 Sum_probs=58.4
Q ss_pred EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeec-CCCCcccccCCCCCCEEEEEeecC
Q 019968 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEEL-EDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 121 ~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~L-eD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
..++.|++++||.+||.+|+.+++++ |.+|+|+|+|+.| +|.+||++||+..+++|+|.+..+
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~--P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~LlideP 79 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVA--PFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEP 79 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCC--cccceeeecCceeccCCccHHhcCCCCCCEEEEEecCC
Confidence 56788999999999999999999999 9999999999999 568899999999999999988643
No 65
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.04 E-value=3.2e-10 Score=108.60 Aligned_cols=74 Identities=23% Similarity=0.309 Sum_probs=71.0
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcC--CCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGR--EFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~G--ip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
|.|+|||+.|.+|+++|.|++||.++|.+|+...| .| ..+|+|||+|+.|.|+.++.+|++.+++.|.+++.++
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP--~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYP--AEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCc--hhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 78999999999999999999999999999999999 77 9999999999999999999999999999999998865
No 66
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.04 E-value=1e-09 Score=83.36 Aligned_cols=71 Identities=21% Similarity=0.290 Sum_probs=65.2
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCC-CceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDL-KNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~-~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~ 182 (333)
|+|.|++.+|+.+.+.|.+++++..|++..+++.|++ + +..+|+|+|++|.++.|+++|++++|++|++++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~--~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIP--PEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTT--T-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCC--ccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 5788999999999999999999999999999999999 8 999999999999999999999999999999864
No 67
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.00 E-value=4e-10 Score=112.89 Aligned_cols=75 Identities=23% Similarity=0.280 Sum_probs=70.4
Q ss_pred cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
..+.|.|||.++ ++.+.|....||.+||+.|...++++ +++++|||+||.|.|+.||..|||++|.|||||.+..
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~--~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAP--PDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCC--hhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 347799999888 78999999999999999999999999 9999999999999999999999999999999998854
No 68
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.99 E-value=3.1e-09 Score=78.36 Aligned_cols=72 Identities=29% Similarity=0.400 Sum_probs=68.0
Q ss_pred eeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 112 I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
+++.+..|+++.+++.++++|..+|.+|+...|++ +.+|++.+.|+.|+|+.++.+|+|..+++++++.+..
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~--~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIP--VDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCC--CeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 56788999999999999999999999999999999 9999999999999999999999999999999988753
No 69
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.97 E-value=2.9e-09 Score=84.11 Aligned_cols=71 Identities=17% Similarity=0.304 Sum_probs=60.8
Q ss_pred EEEEEEeC--CeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE-ECCe-----ecccCCccccccccccccceeeee
Q 019968 34 ILIFLSVG--GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV-FEGR-----ELARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 34 M~I~Vt~~--G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li-f~G~-----~L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
+.|+|+.+ ....+..+.++.||.+||.+++..+|+++..|+|. |.|+ .|.+|+.+|.+||+++|++||++-
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 45666543 55566679999999999999999999999999995 7887 587799999999999999999874
No 70
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.96 E-value=1.6e-09 Score=80.42 Aligned_cols=64 Identities=33% Similarity=0.658 Sum_probs=60.2
Q ss_pred eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968 40 VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 40 ~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
.+|+.+.+++.+++||.+||.+|+..+|+|++.|+|+|+|+.|. |+.+|.+|++.+|++|++..
T Consensus 5 ~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~-d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 5 LTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILK-DDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred cCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCC-CcCCHHHCCCCCCCEEEEEE
Confidence 46889999999999999999999999999999999999999997 99999999999999998764
No 71
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.94 E-value=1.3e-09 Score=109.17 Aligned_cols=75 Identities=23% Similarity=0.382 Sum_probs=69.5
Q ss_pred CcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968 32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (333)
Q Consensus 32 ~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls 107 (333)
..++|+||-.+..+.+.|..+.||.+||..|...++.++++++|+|+||.|+ |+.||..|||+||.||||+.+..
T Consensus 14 ~~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILK-D~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 14 SLIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILK-DDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred ceeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCcccc-ChhhHHHcCCCCCcEEEEEeccC
Confidence 5689999755559999999999999999999999999999999999999999 99999999999999999998753
No 72
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.92 E-value=1.1e-09 Score=90.57 Aligned_cols=76 Identities=21% Similarity=0.225 Sum_probs=62.4
Q ss_pred CcEEEEEE-eCC-eEEEEEecCCCCHHHHHHHHHHh-----hCCC--CcceEEEECCeecccCCccccccc------ccc
Q 019968 32 DSILIFLS-VGG-SVIPMRVMESDSIASVKLRIQSY-----NGFF--VKKQKLVFEGRELARSNSRVRDYG------LAD 96 (333)
Q Consensus 32 ~~M~I~Vt-~~G-~~~~i~V~~sdTV~~LK~kI~~~-----~gip--~~~Q~Lif~G~~L~~D~~tL~dyg------I~~ 96 (333)
+.+.|.++ .+| ..=+..+.+++||++||.+|++. .++| +++|+|+|+|+.|+ |+.||++|+ +..
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLe-D~~TL~d~~~p~g~~~~~ 81 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILE-NSKTVGECRSPVGDIAGG 81 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecC-CCCcHHHhCCcccccCCC
Confidence 45566665 355 44567888999999999999944 4555 99999999999998 999999999 677
Q ss_pred ccceeeeeeccc
Q 019968 97 GNVLHLVLRLSD 108 (333)
Q Consensus 97 gstV~Lv~rlsd 108 (333)
..|+|+++|++.
T Consensus 82 ~~TmHvvlr~~~ 93 (113)
T cd01814 82 VITMHVVVQPPL 93 (113)
T ss_pred ceEEEEEecCCC
Confidence 789999998753
No 73
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.89 E-value=6e-09 Score=79.07 Aligned_cols=70 Identities=21% Similarity=0.459 Sum_probs=63.5
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCC-cceEEEECCeecccCCccccccccccccceeeee
Q 019968 34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFV-KKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~-~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
|+|+|+ .+|+.+.+.|.+++++..|+.+.+++.|+|+ +..+|+|+|+.|. ++.|+++||+.+|++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~-~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLD-PNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE--TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcC-CCCCHHHCCCCCCCEEEEEC
Confidence 788895 6789999999999999999999999999999 9999999999998 89999999999999998863
No 74
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.83 E-value=4.3e-09 Score=100.98 Aligned_cols=73 Identities=19% Similarity=0.439 Sum_probs=68.4
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhC--CCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNG--FFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (333)
Q Consensus 34 M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~g--ip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls 107 (333)
|+|+| ++.|.+|++++.|++||.++|.+|+...| .|+.+|+|+|+|+.|. |+.++.+|+|.++.-|.+++..+
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~-D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILK-DETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceecc-CCcchhhhccccCceEEEEEecC
Confidence 78999 59999999999999999999999999999 9999999999999998 99999999999998887777654
No 75
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.72 E-value=5.5e-08 Score=71.57 Aligned_cols=71 Identities=38% Similarity=0.700 Sum_probs=65.9
Q ss_pred EEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968 36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (333)
Q Consensus 36 I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls 107 (333)
+++ +..|+++.+++.++++|..+|.+|+...|++.++|++.+.|+.|+ |+.++.+|+|..++++++..++.
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~-d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLE-DGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECc-CCCcHHHhCCCCCCEEEEEEecC
Confidence 345 588999999999999999999999999999999999999999998 88999999999999999987764
No 76
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.71 E-value=6.5e-08 Score=76.52 Aligned_cols=71 Identities=20% Similarity=0.425 Sum_probs=58.5
Q ss_pred EEEEEEeCC---eEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEEC----C---eecccCCccccccccccccceeee
Q 019968 34 ILIFLSVGG---SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE----G---RELARSNSRVRDYGLADGNVLHLV 103 (333)
Q Consensus 34 M~I~Vt~~G---~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~----G---~~L~~D~~tL~dygI~~gstV~Lv 103 (333)
+.|+|+... ...+..+.++.||++||.+|+..+|+|++.|+|.+. + ..+.+|+.+|.+||+++|.+||+.
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 567786433 489999999999999999999999999999999875 1 236668999999999999999886
Q ss_pred e
Q 019968 104 L 104 (333)
Q Consensus 104 ~ 104 (333)
-
T Consensus 82 D 82 (87)
T PF14560_consen 82 D 82 (87)
T ss_dssp E
T ss_pred e
Confidence 4
No 77
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.71 E-value=6.4e-08 Score=76.40 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=55.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE-ECCe-----ec-CCCCcccccCCCCCCEEEEEee
Q 019968 119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI-CDGE-----EL-EDQRLITDICKRNEAVIHLLVR 183 (333)
Q Consensus 119 Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi-f~Gk-----~L-eD~~tL~dy~I~~gsvIhLv~r 183 (333)
......++.++.||.+||++++..+|++ +..|+|. |.|+ +| +|..+|++|++++|..||++-.
T Consensus 12 ~~~~ekr~~~~~Tv~~lK~kl~~~~G~~--~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~ 81 (84)
T cd01789 12 SFSFEKKYSRGLTIAELKKKLELVVGTP--ASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV 81 (84)
T ss_pred ceeeeEecCCCCcHHHHHHHHHHHHCCC--ccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence 3445667999999999999999999999 9999995 8888 56 6788999999999999999753
No 78
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.65 E-value=5.8e-08 Score=80.29 Aligned_cols=73 Identities=18% Similarity=0.204 Sum_probs=64.1
Q ss_pred EEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCcccccccc-------ccccceeeeeecc
Q 019968 35 LIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL-------ADGNVLHLVLRLS 107 (333)
Q Consensus 35 ~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI-------~~gstV~Lv~rls 107 (333)
-+.|+....++.+++.++.||.+||++|+.....|++.|+|+..+..|+ |+.||++||+ +..++|-|.+|..
T Consensus 4 FlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLe-D~kTL~d~g~t~~~akaq~pA~vgLa~r~~ 82 (119)
T cd01788 4 FLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLD-DGKTLGDCGFTSQTARPQAPATVGLAFRSS 82 (119)
T ss_pred EEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeec-ccccHHHcCccccccccCCCCeEEEEEecC
Confidence 3444778888999999999999999999999999999999996677787 9999999999 7788988888754
Q ss_pred c
Q 019968 108 D 108 (333)
Q Consensus 108 d 108 (333)
+
T Consensus 83 d 83 (119)
T cd01788 83 D 83 (119)
T ss_pred C
Confidence 4
No 79
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.59 E-value=3.6e-07 Score=76.03 Aligned_cols=74 Identities=24% Similarity=0.319 Sum_probs=56.0
Q ss_pred eeEeeeCCc-EEEEEEecCCchHHHHHHHHHhcC-----CCCCCCceEEEECCeecCCCCcccccCCCCCC------EEE
Q 019968 112 ITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGR-----EFVDLKNQELICDGEELEDQRLITDICKRNEA------VIH 179 (333)
Q Consensus 112 I~Vkt~~Gk-~~~l~V~~sdTV~~LK~~I~~~~G-----ip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gs------vIh 179 (333)
|.++..+|+ ..++..++++||++||++|...+- .|..+...||||.||.|+|+.+|++|.+..+. ++|
T Consensus 5 lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vmH 84 (111)
T PF13881_consen 5 LKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVMH 84 (111)
T ss_dssp EEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEEE
T ss_pred EEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEEE
Confidence 444556888 788999999999999999998652 24357889999999999999999999887665 799
Q ss_pred EEeecC
Q 019968 180 LLVRKS 185 (333)
Q Consensus 180 Lv~r~~ 185 (333)
|+++..
T Consensus 85 lvvrp~ 90 (111)
T PF13881_consen 85 LVVRPN 90 (111)
T ss_dssp EEE-SS
T ss_pred EEecCC
Confidence 999865
No 80
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.9e-07 Score=100.38 Aligned_cols=71 Identities=23% Similarity=0.291 Sum_probs=68.8
Q ss_pred eeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 112 I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
+.|||++.++.+|-+...+||.++|..|.++..|+ .+.|||||.|+.|.|++++.+|+| +|.+|||+-|.+
T Consensus 5 v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~--s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverpp 75 (1143)
T KOG4248|consen 5 VLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIP--SEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPP 75 (1143)
T ss_pred eeeeecccceeEEEechHHHHHHHHHHHHHhcccc--cccceeeecceeeccchhhhhccC-CCeEEEeeccCC
Confidence 78999999999999999999999999999999999 999999999999999999999999 999999999864
No 81
>PLN02560 enoyl-CoA reductase
Probab=98.44 E-value=4.5e-07 Score=87.84 Aligned_cols=70 Identities=20% Similarity=0.327 Sum_probs=61.8
Q ss_pred cceeEeeeCCcEE---EEEEecCCchHHHHHHHHHhcCC-CCCCCceEEEEC---C----eecCCCCcccccCCCCCCEE
Q 019968 110 QAITVTTVCGKVF---EFHVERGRNVGYVKQQIAKKGRE-FVDLKNQELICD---G----EELEDQRLITDICKRNEAVI 178 (333)
Q Consensus 110 m~I~Vkt~~Gk~~---~l~V~~sdTV~~LK~~I~~~~Gi-p~~~~~QrLif~---G----k~LeD~~tL~dy~I~~gsvI 178 (333)
|.|.|++.+|+.+ +++++++.||++||.+|+++.++ + +++|||.+. | +.|+|+.+|+|||+++|++|
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~--~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstL 78 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYY--PSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTV 78 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCC--hhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceE
Confidence 6788988889887 79999999999999999999886 6 899999983 4 37899999999999999998
Q ss_pred EEE
Q 019968 179 HLL 181 (333)
Q Consensus 179 hLv 181 (333)
++-
T Consensus 79 y~k 81 (308)
T PLN02560 79 VFK 81 (308)
T ss_pred EEE
Confidence 873
No 82
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.40 E-value=1.2e-06 Score=69.31 Aligned_cols=71 Identities=18% Similarity=0.197 Sum_probs=55.5
Q ss_pred ceeEeeeCC--cEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEEC----C---eec-CCCCcccccCCCCCCEEEE
Q 019968 111 AITVTTVCG--KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD----G---EEL-EDQRLITDICKRNEAVIHL 180 (333)
Q Consensus 111 ~I~Vkt~~G--k~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~----G---k~L-eD~~tL~dy~I~~gsvIhL 180 (333)
.|+|..... .....+++++.||.+||.+|+..+|+| ++.|+|.+. + ..+ +|..+|.+|++++|.+||+
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~--~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V 80 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIP--PSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHV 80 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS---TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCC--cccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEE
Confidence 345544333 478899999999999999999999999 999999874 2 224 5689999999999999999
Q ss_pred Eee
Q 019968 181 LVR 183 (333)
Q Consensus 181 v~r 183 (333)
.-.
T Consensus 81 ~D~ 83 (87)
T PF14560_consen 81 VDT 83 (87)
T ss_dssp EE-
T ss_pred EeC
Confidence 754
No 83
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.36 E-value=1.1e-06 Score=72.77 Aligned_cols=74 Identities=18% Similarity=0.122 Sum_probs=62.1
Q ss_pred cceeEeeeCCc-EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCC-------CCCCEEEEE
Q 019968 110 QAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK-------RNEAVIHLL 181 (333)
Q Consensus 110 m~I~Vkt~~Gk-~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I-------~~gsvIhLv 181 (333)
|.+|++-...| ++.+++.++.||.+||++|+.-...| |++|+|+-.+..|+|++||+|||+ +..+++-|.
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~p--p~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa 78 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRP--PEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLA 78 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCC--hhHheeecCceeecccccHHHcCccccccccCCCCeEEEE
Confidence 34555444444 56789999999999999999999999 999999977788999999999999 668899998
Q ss_pred eecC
Q 019968 182 VRKS 185 (333)
Q Consensus 182 ~r~~ 185 (333)
+|..
T Consensus 79 ~r~~ 82 (119)
T cd01788 79 FRSS 82 (119)
T ss_pred EecC
Confidence 8853
No 84
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=4.8e-07 Score=97.33 Aligned_cols=72 Identities=25% Similarity=0.448 Sum_probs=68.1
Q ss_pred EEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 35 LIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 35 ~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
.|.| +++.++.++.|...+||.+||..|.++.+|+...|+|+|.|+.|. |++++++|+| +|.+|||+.|++.
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~-~~k~vq~~~v-dgk~~hlverppp 76 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQ-DDKKVQEYNV-DGKVIHLVERPPP 76 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeec-cchhhhhccC-CCeEEEeeccCCC
Confidence 3777 599999999999999999999999999999999999999999998 9999999999 9999999999754
No 85
>PLN02560 enoyl-CoA reductase
Probab=98.27 E-value=1.5e-06 Score=84.36 Aligned_cols=68 Identities=25% Similarity=0.462 Sum_probs=58.5
Q ss_pred EEEEEE-eCCeEE---EEEecCCCCHHHHHHHHHHhhCC-CCcceEEEEC---C----eecccCCcccccccccccccee
Q 019968 34 ILIFLS-VGGSVI---PMRVMESDSIASVKLRIQSYNGF-FVKKQKLVFE---G----RELARSNSRVRDYGLADGNVLH 101 (333)
Q Consensus 34 M~I~Vt-~~G~~~---~i~V~~sdTV~~LK~kI~~~~gi-p~~~Q~Lif~---G----~~L~~D~~tL~dygI~~gstV~ 101 (333)
|+|.|+ .+|+.+ ++++++++||++||.+|+++.++ ++++|+|.+. | ..|. |+.+|++||+++|++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~-d~ktL~d~gv~~gstLy 79 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLD-DSKSLKDYGLGDGGTVV 79 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccC-CCCCHHhcCCCCCceEE
Confidence 678885 567776 79999999999999999999986 8999999983 3 3677 88999999999999876
Q ss_pred e
Q 019968 102 L 102 (333)
Q Consensus 102 L 102 (333)
+
T Consensus 80 ~ 80 (308)
T PLN02560 80 F 80 (308)
T ss_pred E
Confidence 5
No 86
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.16 E-value=9.9e-06 Score=56.13 Aligned_cols=64 Identities=27% Similarity=0.296 Sum_probs=58.6
Q ss_pred eCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (333)
Q Consensus 117 ~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~ 182 (333)
.+|....+.+.+..|+++||.+|.++.|.+ +..|.|.++|..+.+...+.+|++.++++|++..
T Consensus 5 ~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 5 NDGKTVELLVPSGTTVADLKEKLAKKLGLP--PEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHHHHCcC--hHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 367888899999999999999999999988 9999999999999988888899999999999864
No 87
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.15 E-value=1.1e-05 Score=67.19 Aligned_cols=74 Identities=30% Similarity=0.426 Sum_probs=54.7
Q ss_pred cEEEEEE-eCCe-EEEEEecCCCCHHHHHHHHHHhh-------CCCCcceEEEECCeecccCCcccccccccccc-----
Q 019968 33 SILIFLS-VGGS-VIPMRVMESDSIASVKLRIQSYN-------GFFVKKQKLVFEGRELARSNSRVRDYGLADGN----- 98 (333)
Q Consensus 33 ~M~I~Vt-~~G~-~~~i~V~~sdTV~~LK~kI~~~~-------gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gs----- 98 (333)
.+.|.+. .+|. ..++..++++||++||..|...- -..++..||+|.|+.|+ |+.+|++|++..|.
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~-d~~tL~~~~~~~~~~~~~~ 80 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILE-DNKTLSDCRLPSGETPGGP 80 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE--SSSBTGGGT--TTSETT--
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecC-CcCcHHHhCCCCCCCCCCC
Confidence 4556664 5887 89999999999999999999741 12356789999999998 99999999987765
Q ss_pred -ceeeeeecc
Q 019968 99 -VLHLVLRLS 107 (333)
Q Consensus 99 -tV~Lv~rls 107 (333)
++||++++.
T Consensus 81 ~vmHlvvrp~ 90 (111)
T PF13881_consen 81 TVMHLVVRPN 90 (111)
T ss_dssp EEEEEEE-SS
T ss_pred EEEEEEecCC
Confidence 678887764
No 88
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.10 E-value=6.2e-06 Score=64.71 Aligned_cols=72 Identities=19% Similarity=0.281 Sum_probs=45.3
Q ss_pred CcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECC---eec-ccCCccccccccccccceeee
Q 019968 32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG---REL-ARSNSRVRDYGLADGNVLHLV 103 (333)
Q Consensus 32 ~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G---~~L-~~D~~tL~dygI~~gstV~Lv 103 (333)
.+|.|.|+.....+.+++++++|+.+||.+|++..++|...|.|+.+- ..| ..++.+|+++||++|+.|+|.
T Consensus 3 ~~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 478889976667888999999999999999999999999999986542 345 347899999999999999874
No 89
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=97.99 E-value=1.1e-05 Score=62.37 Aligned_cols=52 Identities=25% Similarity=0.363 Sum_probs=46.0
Q ss_pred cCCCCHHHHHHHHHHhhC-CCCcceEEE--ECCeecccCCccccccccccccceee
Q 019968 50 MESDSIASVKLRIQSYNG-FFVKKQKLV--FEGRELARSNSRVRDYGLADGNVLHL 102 (333)
Q Consensus 50 ~~sdTV~~LK~kI~~~~g-ip~~~Q~Li--f~G~~L~~D~~tL~dygI~~gstV~L 102 (333)
.++.||.+||..|+...+ +++++|+|. +.|+.|. |+.+|.+||+.+|++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~-d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLK-DDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccC-CcccHhhcCCCCCCEEEE
Confidence 488999999999999876 579999985 7899998 889999999999998765
No 90
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.97 E-value=3.3e-05 Score=59.41 Aligned_cols=71 Identities=18% Similarity=0.142 Sum_probs=60.5
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE---CC-e-ecCCCCcccccCCCCCCEEEEEee
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DG-E-ELEDQRLITDICKRNEAVIHLLVR 183 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif---~G-k-~LeD~~tL~dy~I~~gsvIhLv~r 183 (333)
++++|+-..+...++.|+|..+|..+|++|....|++ ..|||.| +| + .|.+..+|++|||-.+-.|.|+-.
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~---g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCS---GLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCcc---cceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence 4678888888899999999999999999999999986 7999999 33 2 358899999999987777777654
No 91
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.96 E-value=2.7e-05 Score=53.92 Aligned_cols=63 Identities=29% Similarity=0.494 Sum_probs=57.3
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968 41 GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 41 ~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
++....+.+.++.|+.++|.++..+.|.++..+.|+++|..+. +...+.+|++.+++++++..
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILP-DSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEe
Confidence 5788889999999999999999999999999999999999998 77777899999999998764
No 92
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.94 E-value=1.4e-05 Score=62.69 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=43.4
Q ss_pred cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE---CCeec--CCCCcccccCCCCCCEEEE
Q 019968 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DGEEL--EDQRLITDICKRNEAVIHL 180 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif---~Gk~L--eD~~tL~dy~I~~gsvIhL 180 (333)
+.|-|-|++.+| .+.+++++++|+.+||++|++..++| ...|.|.. ...++ .++.+|+++|++.|+.|+|
T Consensus 3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~--~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIP--DSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS-----TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCC--CcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEE
Confidence 456778888776 57889999999999999999999999 78888753 22345 4688999999999999987
No 93
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=97.90 E-value=2.9e-05 Score=59.98 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=46.4
Q ss_pred ecCCchHHHHHHHHHhcC-CCCCCCceEEE--ECCeecCCCCcccccCCCCCCEEEE
Q 019968 127 ERGRNVGYVKQQIAKKGR-EFVDLKNQELI--CDGEELEDQRLITDICKRNEAVIHL 180 (333)
Q Consensus 127 ~~sdTV~~LK~~I~~~~G-ip~~~~~QrLi--f~Gk~LeD~~tL~dy~I~~gsvIhL 180 (333)
.++.||.+||..|+...+ ++ ++.|||. +.|+.|.|+.+|.+||+.+|++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~--~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLT--VNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCC--cceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 478899999999999876 46 8999995 7999999999999999999999886
No 94
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.75 E-value=9.5e-05 Score=56.93 Aligned_cols=71 Identities=27% Similarity=0.343 Sum_probs=59.6
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEEC---C-eecccCCccccccccccccceeeeee
Q 019968 34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE---G-RELARSNSRVRDYGLADGNVLHLVLR 105 (333)
Q Consensus 34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~---G-~~L~~D~~tL~dygI~~gstV~Lv~r 105 (333)
++|+|+ .+...+++.|+|..+|..+|.+|....|++- .|+|.|. | ++|-++.++|++|||..+..|.|...
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence 478885 6668899999999999999999999999986 8999985 3 34444999999999998888776654
No 95
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=4.3e-05 Score=73.44 Aligned_cols=63 Identities=16% Similarity=0.271 Sum_probs=58.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE-eec
Q 019968 120 KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL-VRK 184 (333)
Q Consensus 120 k~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv-~r~ 184 (333)
..++++|+.+.+|.+||+-++...|+| +++-++||+||+|.|+.++..+.+...+++|++ +|+
T Consensus 14 h~l~v~v~~~t~I~~lke~Vak~~gvp--~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 14 HGLPVEVDSDTSIFQLKEVVAKRQGVP--ADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CceeEEEecCCCHHHHHHHHHHhhCCC--hhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 457899999999999999999999999 999999999999999999999999999999998 444
No 96
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=7.9e-05 Score=74.98 Aligned_cols=72 Identities=13% Similarity=0.215 Sum_probs=67.0
Q ss_pred EEEEEEeCCeEEEEE-ecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 34 ILIFLSVGGSVIPMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 34 M~I~Vt~~G~~~~i~-V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
..|.|+..|+.+.++ ++.++|+..||.++...+|++|++|++++.|..+. |+..+....|++|.+++|+-..
T Consensus 4 ~~v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~-dd~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 4 DTVIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAK-DDVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred ceEeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEeccccc-ccccccccccCCCCEEEeeccc
Confidence 457778999999998 99999999999999999999999999999999998 8889999999999999998654
No 97
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0001 Score=70.93 Aligned_cols=72 Identities=21% Similarity=0.455 Sum_probs=62.5
Q ss_pred EEEEEEeC----CeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeee-eec
Q 019968 34 ILIFLSVG----GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV-LRL 106 (333)
Q Consensus 34 M~I~Vt~~----G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv-~rl 106 (333)
|.++|.+. ...++++|+.+.+|.+||.-++..+|+|+++.+++|+|++|+ ++.+++.+.+...+.+|.+ +|+
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs-~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELS-NDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccc-cCceeecccccccchhhhhccCc
Confidence 45566432 355889999999999999999999999999999999999999 9999999999888888877 555
No 98
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0001 Score=55.17 Aligned_cols=68 Identities=22% Similarity=0.211 Sum_probs=58.5
Q ss_pred EEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeee
Q 019968 35 LIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (333)
Q Consensus 35 ~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv 103 (333)
.+.+ -+-|+...+..+++|||+++|..|+.++|..+++..|--.+.... |.-+|++|.|.+|..+.|.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~k-d~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFK-DHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhh-cccceeeEEeccCccEEEe
Confidence 3444 356888999999999999999999999999999888876667777 9999999999999988764
No 99
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.14 E-value=0.00086 Score=54.11 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=51.5
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEE-CC-eecccCCcccccccc
Q 019968 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF-EG-RELARSNSRVRDYGL 94 (333)
Q Consensus 34 M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif-~G-~~L~~D~~tL~dygI 94 (333)
|-+.|+....++.++..++.||-+||.+++....-|++.|+|+. .. +.|. |..+|+++|.
T Consensus 3 ~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~-D~ktL~d~gf 64 (110)
T KOG4495|consen 3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLD-DGKTLGDCGF 64 (110)
T ss_pred eeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhh-ccchhhhccc
Confidence 34455777788999999999999999999999999999999987 54 4565 9999999975
No 100
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=96.76 E-value=0.0039 Score=47.11 Aligned_cols=64 Identities=14% Similarity=0.089 Sum_probs=47.1
Q ss_pred EEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceee
Q 019968 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHL 102 (333)
Q Consensus 38 Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~L 102 (333)
|..+++.+.+.+.|+.|+.++-...++++|+.+++-.|.|+++.|+ -+.++.-.|+.+|+.+.|
T Consensus 2 i~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ld-lslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 2 ICYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLD-LSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp E-TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEES-SS-BHHHH---SS-EEEE
T ss_pred CccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEec-cccceeecCCCCCCEEeC
Confidence 3467899999999999999999999999999999999999999997 889999999999998865
No 101
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=96.45 E-value=0.0038 Score=50.47 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=45.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE-CC-eecCCCCcccccCCC
Q 019968 120 KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC-DG-EELEDQRLITDICKR 173 (333)
Q Consensus 120 k~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif-~G-k~LeD~~tL~dy~I~ 173 (333)
.++.++.+++.||-+||.+++....-| ++.|+|.- +- +.|+|+.+|+|+|.+
T Consensus 12 ttif~da~es~tV~elK~~l~gi~~~P--vn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 12 TTIFTDAKESSTVFELKRKLEGILKRP--VNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eeEEeecCccccHHHHHHHHHHHHhCC--CcchheeecCHHHHhhccchhhhcccc
Confidence 357789999999999999999998889 99999986 44 456999999999864
No 102
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0016 Score=48.88 Aligned_cols=69 Identities=14% Similarity=0.118 Sum_probs=56.9
Q ss_pred ceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 019968 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (333)
Q Consensus 111 ~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv 181 (333)
++.++..-|+...+.+.+.+||+++|..|+..+|.. ++...|---+..+.|.-+|+||.+.+|-.+.|-
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~--~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTR--PEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCC--hhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 345556668999999999999999999999999987 777666545556789999999999999877763
No 103
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.18 E-value=0.015 Score=44.99 Aligned_cols=68 Identities=22% Similarity=0.325 Sum_probs=47.7
Q ss_pred EEEEEEeC-CeEEEEEecCCCCHHHHHHHHHHhhCCCCcc------eEEE-ECCeecccCCccccccccccccceee
Q 019968 34 ILIFLSVG-GSVIPMRVMESDSIASVKLRIQSYNGFFVKK------QKLV-FEGRELARSNSRVRDYGLADGNVLHL 102 (333)
Q Consensus 34 M~I~Vt~~-G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~------Q~Li-f~G~~L~~D~~tL~dygI~~gstV~L 102 (333)
.+|+|... |+.+.+.+..+.+|++|...+.+..+.+... -.|. -+|..|. ++.+|++|||.+|+.++|
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~-~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLD-PDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEE-TTSBCGGGT--TT-EEEE
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccC-CcCcHhHcCCCCCCEEEe
Confidence 45666554 5899999999999999999999988874332 2344 4689998 999999999999999876
No 104
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=96.04 E-value=0.027 Score=42.56 Aligned_cols=63 Identities=16% Similarity=0.038 Sum_probs=46.4
Q ss_pred eeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEE
Q 019968 116 TVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180 (333)
Q Consensus 116 t~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhL 180 (333)
+.+++.+++.|.|+.++.++-+....++|+. +++-.|.|+++.|+-+.+++-.|+.+|+.+.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~--~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLD--PSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT----GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCC--ccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 4578899999999999999999999999998 88899999999999999999999999998875
No 105
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=95.90 E-value=0.017 Score=46.96 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=39.6
Q ss_pred EEEEEEe--cCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccC
Q 019968 121 VFEFHVE--RGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171 (333)
Q Consensus 121 ~~~l~V~--~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~ 171 (333)
..++++. .+.||..||.+|.+..+-...-..+||+|+|+.|.|...++..-
T Consensus 13 Dl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l 65 (97)
T PF10302_consen 13 DLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSEL 65 (97)
T ss_pred CceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhh
Confidence 3567776 78999999999999984332256679999999999988777543
No 106
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.016 Score=58.63 Aligned_cols=71 Identities=11% Similarity=0.116 Sum_probs=62.8
Q ss_pred eeEeeeCCcEEEEE-EecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 112 ITVTTVCGKVFEFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 112 I~Vkt~~Gk~~~l~-V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
|.|+ -.|+.++++ ++.++|+..+|+++...+|++ |+.|++.+.|..+.|+.......|++|.+++++-...
T Consensus 6 v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~--PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e 77 (473)
T KOG1872|consen 6 VIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVP--PERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE 77 (473)
T ss_pred Eeee-ecCccccceeccCCCchHHHHHHHHHhcCCC--ccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence 3443 367888888 899999999999999999999 9999999999999998888889999999999987654
No 107
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=95.73 E-value=0.067 Score=41.26 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=57.8
Q ss_pred cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCc-eEEE--ECCeecCC--CCcccccCCCCCCEEEE
Q 019968 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKN-QELI--CDGEELED--QRLITDICKRNEAVIHL 180 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~-QrLi--f~Gk~LeD--~~tL~dy~I~~gsvIhL 180 (333)
+...|.||..+|+.+.-...+++||.+|..-|......+ ... -.|+ |-.+.+.+ +.||.+.++.++++|++
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~--~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSP--EESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCT--TTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCC--CCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 345678899999999999999999999999999887655 333 5676 67788844 36999999999999887
No 108
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=95.66 E-value=0.037 Score=42.81 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=48.1
Q ss_pred ceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCC-CCCc---eEEE-ECCeecCCCCcccccCCCCCCEEEE
Q 019968 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFV-DLKN---QELI-CDGEELEDQRLITDICKRNEAVIHL 180 (333)
Q Consensus 111 ~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~-~~~~---QrLi-f~Gk~LeD~~tL~dy~I~~gsvIhL 180 (333)
.|.|...+|+.+-+.+..+.+|++|...|.+..+.+. +... -+|. -+|..|.++.+|++|+|.+|++++|
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 4566554568889999999999999999999877531 1222 3444 4789999999999999999999987
No 109
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.082 Score=43.05 Aligned_cols=77 Identities=14% Similarity=0.338 Sum_probs=66.4
Q ss_pred CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
..-+++.|. -++....+.|..+.+...|+..-++..|++.+..+..|+|+.+. ...|-.+.+..+|+.|.+.....+
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~-~~~TP~~L~mEd~D~Iev~~~q~g 95 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIR-ETHTPADLEMEDGDEIEVVQEQTG 95 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcC-CCCChhhhCCcCCcEEEEEeeccc
Confidence 345566664 56678899999999999999999999999999999999999998 999999999999999988765433
No 110
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=95.60 E-value=0.085 Score=40.68 Aligned_cols=73 Identities=22% Similarity=0.236 Sum_probs=60.1
Q ss_pred CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcc-eEEE--ECCeecccCC-ccccccccccccceeee
Q 019968 31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK-QKLV--FEGRELARSN-SRVRDYGLADGNVLHLV 103 (333)
Q Consensus 31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~-Q~Li--f~G~~L~~D~-~tL~dygI~~gstV~Lv 103 (333)
.....|-|+ .+|+.+.-...+++||.+|..-|......+... ..|+ |-.+.+..++ .+|++.|+.++++|++.
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 456788886 588999999999999999999999987777654 6675 5678888555 79999999999998763
No 111
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.52 E-value=0.018 Score=52.86 Aligned_cols=66 Identities=15% Similarity=0.237 Sum_probs=58.9
Q ss_pred EEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeee
Q 019968 37 FLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (333)
Q Consensus 37 ~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv 103 (333)
.++.+++.+.+.+..-+|+.++|.++++..|+.+..|+++|.|..|- |...|..|+|..|+...+.
T Consensus 151 rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~-dkt~LeEc~iekg~rYvlq 216 (231)
T KOG0013|consen 151 RLTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLV-DKTDLEECKIEKGQRYVLQ 216 (231)
T ss_pred HhhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCcee-ccccceeeeecCCCEEEEE
Confidence 33456788999999999999999999999999999999999999999 9999999999999655443
No 112
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.12 Score=42.04 Aligned_cols=73 Identities=12% Similarity=0.240 Sum_probs=63.6
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~ 184 (333)
+.+-|+..++.+..+.|..+.....|+.--++..|+. ...-|.+|+|+.+.+..|-++.+.++|+.|.++...
T Consensus 21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~--~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q 93 (99)
T KOG1769|consen 21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLS--MNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQ 93 (99)
T ss_pred EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCc--cceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeec
Confidence 3344555566778999999999999999999999999 899999999999999999999999999999987653
No 113
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.058 Score=49.45 Aligned_cols=103 Identities=17% Similarity=0.266 Sum_probs=70.7
Q ss_pred EEEEEEeCCe--EEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE-ECC-----eecccCCccccccccccccceeeeee
Q 019968 34 ILIFLSVGGS--VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV-FEG-----RELARSNSRVRDYGLADGNVLHLVLR 105 (333)
Q Consensus 34 M~I~Vt~~G~--~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li-f~G-----~~L~~D~~tL~dygI~~gstV~Lv~r 105 (333)
+.|+|+..-. ...-...++.||.+||.|++..+|.+++.+.|. |.| ..|++++..|..|+..+|-.||++-.
T Consensus 2 v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~ 81 (234)
T KOG3206|consen 2 VRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS 81 (234)
T ss_pred eEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence 4667753323 344567899999999999999999999999985 554 45887889999999999999998753
Q ss_pred cccccceeEeeeCCcE-EEEEEe------cCCchHHHHHHH
Q 019968 106 LSDLQAITVTTVCGKV-FEFHVE------RGRNVGYVKQQI 139 (333)
Q Consensus 106 lsd~m~I~Vkt~~Gk~-~~l~V~------~sdTV~~LK~~I 139 (333)
.... +. .+.+-.. -.+++. +++||...|.+-
T Consensus 82 ~~~~--~~-~~~d~s~veky~iSee~Y~qRtdSvr~~kk~~ 119 (234)
T KOG3206|consen 82 NAQS--IS-NTEDESIVEKYEISEEDYLQRTDSVRRFKKKH 119 (234)
T ss_pred Cccc--cc-cccccccceeeecCHHHHhhhhHHHHHHHHHh
Confidence 3221 10 0111111 112222 578898888654
No 114
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=94.92 E-value=0.053 Score=44.11 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=39.5
Q ss_pred eEEEEEec--CCCCHHHHHHHHHHhhC--CCCcceEEEECCeecccCCcccccccc
Q 019968 43 SVIPMRVM--ESDSIASVKLRIQSYNG--FFVKKQKLVFEGRELARSNSRVRDYGL 94 (333)
Q Consensus 43 ~~~~i~V~--~sdTV~~LK~kI~~~~g--ip~~~Q~Lif~G~~L~~D~~tL~dygI 94 (333)
..++++|. .+.||..||..|..... ..-..++|+|+|+.|. |+..|...-.
T Consensus 12 pDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~-d~t~l~~~l~ 66 (97)
T PF10302_consen 12 PDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLN-DHTDLSSELK 66 (97)
T ss_pred CCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccC-ccchhhhhhc
Confidence 33667777 88999999999999873 4455788999999998 7776655443
No 115
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=94.90 E-value=0.14 Score=39.65 Aligned_cols=70 Identities=6% Similarity=-0.007 Sum_probs=55.8
Q ss_pred ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE--ECCeecCC---CCcccccCCCCCCEEEE
Q 019968 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELED---QRLITDICKRNEAVIHL 180 (333)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi--f~Gk~LeD---~~tL~dy~I~~gsvIhL 180 (333)
...|.||..+|+.+.-....++||.+|.+-|....+.. ...-.|+ |-.+.+.+ +.||.+.++.+++++.+
T Consensus 4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~--~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDG--NDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCC--CCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 34678899999999999999999999999997666655 4556675 66777743 57999999988888775
No 116
>KOG2381 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=94.90 E-value=0.012 Score=56.70 Aligned_cols=40 Identities=35% Similarity=0.517 Sum_probs=37.6
Q ss_pred hhhhccCCCceeeeeeeecccCCchhHHHHHHHHHhhccCC
Q 019968 263 VDGLERGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLP 303 (333)
Q Consensus 263 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (333)
++++++|+++++||.+||||++.+ +..+.++.+|..++.+
T Consensus 246 k~~~~~~l~~~~~g~~~~re~~~~-~~~~~~~~~~~~~~~~ 285 (286)
T KOG2381|consen 246 KKAFEKQLSVMRIGILNLREALKD-SKLEQLCVEAKASVVE 285 (286)
T ss_pred HHHHHhCchHhhccceehHHHHhh-CccHHHHHhhhhcccC
Confidence 999999999999999999999998 9999999999887765
No 117
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=94.63 E-value=0.15 Score=45.22 Aligned_cols=73 Identities=12% Similarity=0.185 Sum_probs=54.5
Q ss_pred cceeEeeeCC----cEEEEEEecCCchHHHHHHHHHhcCCCCCCCce-EEEE-CCeec--CCCCcccccCCCCCC----E
Q 019968 110 QAITVTTVCG----KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQ-ELIC-DGEEL--EDQRLITDICKRNEA----V 177 (333)
Q Consensus 110 m~I~Vkt~~G----k~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~Q-rLif-~Gk~L--eD~~tL~dy~I~~gs----v 177 (333)
|+|+|.+++| .++.+.+.++.||.+|+.+|.+..+++ ...| .|.+ .|+.| .++..++.+.-.+.+ +
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~--~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~ 78 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIP--SSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFIT 78 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCC--ccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceE
Confidence 5789999999 588899999999999999999999988 6664 4554 46666 456667766544433 5
Q ss_pred EEEEeec
Q 019968 178 IHLLVRK 184 (333)
Q Consensus 178 IhLv~r~ 184 (333)
++|..++
T Consensus 79 l~l~~rl 85 (162)
T PF13019_consen 79 LRLSLRL 85 (162)
T ss_pred EEEEEec
Confidence 6666664
No 118
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.60 E-value=0.17 Score=39.37 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=53.0
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE--ECCeecC-CCCcccccCCCCCCEE
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE-DQRLITDICKRNEAVI 178 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi--f~Gk~Le-D~~tL~dy~I~~gsvI 178 (333)
..|.||..+|+.+.-....++||++|.+-|....+.+ +.....|. |-.++|. ++.||.|.|+.+..++
T Consensus 5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~-~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEF-AARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCC-CCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 4578899999999999999999999999999875422 13455665 7788884 4889999999764443
No 119
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=94.48 E-value=0.13 Score=45.63 Aligned_cols=75 Identities=19% Similarity=0.260 Sum_probs=53.4
Q ss_pred EEEEE-EeCC----eEEEEEecCCCCHHHHHHHHHHhhCCCCcce-EEEE-CCeecc-cCCcccccccccccc----cee
Q 019968 34 ILIFL-SVGG----SVIPMRVMESDSIASVKLRIQSYNGFFVKKQ-KLVF-EGRELA-RSNSRVRDYGLADGN----VLH 101 (333)
Q Consensus 34 M~I~V-t~~G----~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q-~Lif-~G~~L~-~D~~tL~dygI~~gs----tV~ 101 (333)
|+|+| +++| .++.+.+.++.||.+|+.+|....+++...| .|.+ .++.|. .++..+..+.-.+.+ +++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 68899 5888 6899999999999999999999999998874 4555 355653 245555555543332 455
Q ss_pred eeeeccc
Q 019968 102 LVLRLSD 108 (333)
Q Consensus 102 Lv~rlsd 108 (333)
+.+++.+
T Consensus 81 l~~rl~G 87 (162)
T PF13019_consen 81 LSLRLRG 87 (162)
T ss_pred EEEeccC
Confidence 5555543
No 120
>COG5417 Uncharacterized small protein [Function unknown]
Probab=94.45 E-value=0.21 Score=38.75 Aligned_cols=69 Identities=17% Similarity=0.302 Sum_probs=56.0
Q ss_pred cEEEEE--E-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCC-----cceEEEECCeecccCCccccccccccccceee
Q 019968 33 SILIFL--S-VGGSVIPMRVMESDSIASVKLRIQSYNGFFV-----KKQKLVFEGRELARSNSRVRDYGLADGNVLHL 102 (333)
Q Consensus 33 ~M~I~V--t-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~-----~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~L 102 (333)
.|+|+| + ..|.++.+.+....+|..|-..+.+...+.. .+.+..-.++.|. ++..|.+|+|.+|+.+.+
T Consensus 4 ~ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~lls-gd~kL~d~~IadGD~Lei 80 (81)
T COG5417 4 HIKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLS-GDDKLIDYQIADGDILEI 80 (81)
T ss_pred eEEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEec-CCceEEeccccCCCEEEe
Confidence 355566 3 5789999999999999999988888766532 3557788899999 999999999999998754
No 121
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.98 E-value=0.082 Score=48.59 Aligned_cols=61 Identities=15% Similarity=0.088 Sum_probs=55.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEE
Q 019968 118 CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180 (333)
Q Consensus 118 ~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhL 180 (333)
+++.+-+.+...+|+.++|.+++.+.|+. +..|+++|+|+.|-|...|..|++.+|..-.+
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D--~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvl 215 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVD--PLSQRIFFSGGVLVDKTDLEECKIEKGQRYVL 215 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccc--hhhheeeccCCceeccccceeeeecCCCEEEE
Confidence 56778899999999999999999999988 89999999999999999999999999954443
No 122
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.68 E-value=0.4 Score=37.14 Aligned_cols=68 Identities=9% Similarity=0.123 Sum_probs=54.5
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE--ECCeecCC---CCcccccCCCCCCEEEE
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELED---QRLITDICKRNEAVIHL 180 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi--f~Gk~LeD---~~tL~dy~I~~gsvIhL 180 (333)
..|.||..+|+.+.-....++|+++|.+-|....+. .....|+ |-.|.+.+ +.||.+.|+.+.++|.+
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~---~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGN---GGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCC---CCCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 457889999999888999999999999999876543 2445665 67788843 57999999999888876
No 123
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=93.66 E-value=0.41 Score=36.95 Aligned_cols=71 Identities=18% Similarity=0.157 Sum_probs=56.1
Q ss_pred CcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE--ECCeecccC--Cccccccccccccceee
Q 019968 32 DSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELARS--NSRVRDYGLADGNVLHL 102 (333)
Q Consensus 32 ~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li--f~G~~L~~D--~~tL~dygI~~gstV~L 102 (333)
..-+|-|+ .+|+.+.-...+++||.+|..-|....+.......|+ |-.+.+.++ +.+|.+.|+.+++++.+
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 35677786 6889999999999999999999976666665566775 556777643 47999999998888765
No 124
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=93.48 E-value=0.49 Score=36.18 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=51.2
Q ss_pred ceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE--ECCeecC---CCCcccccCCCCCCEEEE
Q 019968 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE---DQRLITDICKRNEAVIHL 180 (333)
Q Consensus 111 ~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi--f~Gk~Le---D~~tL~dy~I~~gsvIhL 180 (333)
.|.||..+|+.+.-....++||.+|.+-|...... .....|+ |-.+.+. ++.||.+.|+. .+++.+
T Consensus 4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~---~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~ 74 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP---AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQ 74 (77)
T ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC---CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEE
Confidence 57789999999988999999999999999876543 3455666 5677774 47899999998 455444
No 125
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.48 E-value=0.37 Score=37.55 Aligned_cols=68 Identities=16% Similarity=0.244 Sum_probs=53.2
Q ss_pred cEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCC-CcceEEE--ECCeecccCCccccccccccccce
Q 019968 33 SILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFF-VKKQKLV--FEGRELARSNSRVRDYGLADGNVL 100 (333)
Q Consensus 33 ~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip-~~~Q~Li--f~G~~L~~D~~tL~dygI~~gstV 100 (333)
.-+|-|+ .+|+.+.-.++.++||.+|..-|....+-+ .....|. |-.+.|.+++.||.+.|+.+..++
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 4567776 588999999999999999999999875432 2445665 678889877899999999865443
No 126
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=93.39 E-value=0.71 Score=42.49 Aligned_cols=112 Identities=17% Similarity=0.158 Sum_probs=58.9
Q ss_pred CcEEEEEEeC----CeEEEEEecCCCCHHHHHHHHHHhhCCCCc---ceEE--EECCee---cccCCccccccccccccc
Q 019968 32 DSILIFLSVG----GSVIPMRVMESDSIASVKLRIQSYNGFFVK---KQKL--VFEGRE---LARSNSRVRDYGLADGNV 99 (333)
Q Consensus 32 ~~M~I~Vt~~----G~~~~i~V~~sdTV~~LK~kI~~~~gip~~---~Q~L--if~G~~---L~~D~~tL~dygI~~gst 99 (333)
..|+|+.... -..+.+-|..+.||.+|..+++.+.+++.. ..+| +++++. +. .+..+.+. .+...
T Consensus 19 k~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~-~d~~i~~l--~~~~~ 95 (213)
T PF14533_consen 19 KQFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILS-EDEPISSL--NDYIT 95 (213)
T ss_dssp --EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE--TTSBGGGS----TTE
T ss_pred eEEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecC-CCCchhhc--cCcce
Confidence 3466666322 245888999999999999999999998765 3343 345543 54 55555554 22222
Q ss_pred eeeeeecc----------cccceeEee-------eCCcEEEEEEecCCchHHHHHHHHHhcCCC
Q 019968 100 LHLVLRLS----------DLQAITVTT-------VCGKVFEFHVERGRNVGYVKQQIAKKGREF 146 (333)
Q Consensus 100 V~Lv~rls----------d~m~I~Vkt-------~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip 146 (333)
+.+-.-+. +.+.|.|-. ..|-.|.+.|.+.+|..++|.||+++.|++
T Consensus 96 ~r~E~ip~ee~~~~~~~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~ 159 (213)
T PF14533_consen 96 LRIEEIPEEELNLDDESEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVS 159 (213)
T ss_dssp EEEEE--GGGSS--TT--TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---
T ss_pred eeeecCChHHhhcccccccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCC
Confidence 22221111 112233322 346778899999999999999999999976
No 127
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=92.71 E-value=0.75 Score=36.37 Aligned_cols=70 Identities=11% Similarity=0.074 Sum_probs=55.2
Q ss_pred cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECC--eecC--------CCCcccccCCCCCCE
Q 019968 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG--EELE--------DQRLITDICKRNEAV 177 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~G--k~Le--------D~~tL~dy~I~~gsv 177 (333)
+...|.+|..+|+...-+...++||+.|..-|.. .+.. +....|+++= +.+. .+.||.+-|+.+..+
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~--~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~ 79 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKET--PEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEV 79 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCC--CCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccE
Confidence 3456888999999888888999999999999964 4444 6778888544 7775 367999999988887
Q ss_pred EEE
Q 019968 178 IHL 180 (333)
Q Consensus 178 IhL 180 (333)
+.+
T Consensus 80 L~V 82 (85)
T cd01774 80 LFV 82 (85)
T ss_pred EEE
Confidence 765
No 128
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=92.50 E-value=0.51 Score=37.78 Aligned_cols=66 Identities=24% Similarity=0.280 Sum_probs=45.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE-E---CCe-ecccCCccccccccccccceeeeeecccc
Q 019968 43 SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV-F---EGR-ELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 43 ~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li-f---~G~-~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
..++-.+...|||+.++..+.+.+.+ ...-||- + ++. .|.+.+.|+.+.+|.+|.+|.+-.|..||
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG 84 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG 84 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence 46778889999999999999999999 4556663 2 233 47656789999999999999888776654
No 129
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=91.63 E-value=1.1 Score=34.18 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=49.4
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE--ECCeeccc--CCccccccccccccc
Q 019968 34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELAR--SNSRVRDYGLADGNV 99 (333)
Q Consensus 34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li--f~G~~L~~--D~~tL~dygI~~gst 99 (333)
-+|-|+ .+|+.+.-....++||.+|..-|.....- .....|+ |-.+.+.+ .+.+|.+.|+.+.+.
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~ 72 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVV 72 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccceE
Confidence 456776 58899999999999999999999876543 3445565 55677764 578999999995443
No 130
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=91.39 E-value=1.3 Score=35.03 Aligned_cols=70 Identities=7% Similarity=0.013 Sum_probs=57.4
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE--ECCeec---CCCCcccccCCCCCCEEEEEe
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEEL---EDQRLITDICKRNEAVIHLLV 182 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi--f~Gk~L---eD~~tL~dy~I~~gsvIhLv~ 182 (333)
-+|.||.++|+...-....++++..|-.-+.. .|.+ ++...|+ |=-|.+ +.+.||.+.|+.+..+|.+--
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~--~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYP--NERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCC--CCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 36888999999999999999999999999888 4666 7878887 666766 235799999999999987743
No 131
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=91.21 E-value=0.26 Score=46.51 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=48.5
Q ss_pred EEEEE-EeCC-eEEE-EEecCCCCHHHHHHHHH-HhhCCCCcceEEE----ECCeecccCCccccccccccccceee
Q 019968 34 ILIFL-SVGG-SVIP-MRVMESDSIASVKLRIQ-SYNGFFVKKQKLV----FEGRELARSNSRVRDYGLADGNVLHL 102 (333)
Q Consensus 34 M~I~V-t~~G-~~~~-i~V~~sdTV~~LK~kI~-~~~gip~~~Q~Li----f~G~~L~~D~~tL~dygI~~gstV~L 102 (333)
|.|++ +.++ -..+ .+...+.||.+++.++. +...+.+..+++. -+|+.|. |+.+|++|+...|+++.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~-~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLI-DNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCcccc-chhHHHHhccCCCCEEEE
Confidence 56777 3433 3333 66788999999995554 4566777555443 3699999 999999999999977654
No 132
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=91.16 E-value=0.38 Score=45.43 Aligned_cols=69 Identities=14% Similarity=0.127 Sum_probs=49.3
Q ss_pred cceeEeeeCCc-EEE-EEEecCCchHHHHHHHHHh-cCCCCCCCceEEEE----CCeecCCCCcccccCCCCCCEEEE
Q 019968 110 QAITVTTVCGK-VFE-FHVERGRNVGYVKQQIAKK-GREFVDLKNQELIC----DGEELEDQRLITDICKRNEAVIHL 180 (333)
Q Consensus 110 m~I~Vkt~~Gk-~~~-l~V~~sdTV~~LK~~I~~~-~Gip~~~~~QrLif----~Gk~LeD~~tL~dy~I~~gsvIhL 180 (333)
|.|++...++. ..+ .....+.|+.+++..+..+ ..+. +..+|+.+ .|+.|-|+++|++|+..+|++|.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~--~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKIT--PYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccC--ccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 45666554442 233 5566789999999766665 4565 55555543 899999999999999999987776
No 133
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=90.19 E-value=1.5 Score=33.90 Aligned_cols=69 Identities=17% Similarity=0.299 Sum_probs=53.4
Q ss_pred cEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE--ECCeecccC--Cccccccccccccceee
Q 019968 33 SILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELARS--NSRVRDYGLADGNVLHL 102 (333)
Q Consensus 33 ~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li--f~G~~L~~D--~~tL~dygI~~gstV~L 102 (333)
.-+|.|+ .+|..+.-....++|+.++..-|....+-. ....|+ |-.+.+.++ +.||.+.|+.+.+++.+
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 3567776 688999999999999999999999765433 445565 556777622 57999999999988866
No 134
>COG5417 Uncharacterized small protein [Function unknown]
Probab=89.73 E-value=2 Score=33.43 Aligned_cols=66 Identities=8% Similarity=0.125 Sum_probs=52.5
Q ss_pred eeeCCcEEEEEEecCCchHHHHHHHHHhcCCCC-CC--CceEEEECCeecCCCCcccccCCCCCCEEEE
Q 019968 115 TTVCGKVFEFHVERGRNVGYVKQQIAKKGREFV-DL--KNQELICDGEELEDQRLITDICKRNEAVIHL 180 (333)
Q Consensus 115 kt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~-~~--~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhL 180 (333)
+.-+|+++-+++....+|..|-..+.+...+.. +. ++.+..-.++.|.++..|.||+|.+|+.+.+
T Consensus 12 t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 12 TNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 335689999999999999999888887665321 12 3457778889999999999999999998875
No 135
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=89.69 E-value=0.63 Score=36.05 Aligned_cols=58 Identities=24% Similarity=0.326 Sum_probs=47.6
Q ss_pred EecCCchHHHHHHHHHhcC-CCCCCCceEEEECCeecCCCCccccc-CCCCCCEEEEEeecC
Q 019968 126 VERGRNVGYVKQQIAKKGR-EFVDLKNQELICDGEELEDQRLITDI-CKRNEAVIHLLVRKS 185 (333)
Q Consensus 126 V~~sdTV~~LK~~I~~~~G-ip~~~~~QrLif~Gk~LeD~~tL~dy-~I~~gsvIhLv~r~~ 185 (333)
|.++++|.++++-+..... .. -..-.|.++|+.|+|...|+++ ++++++++.++..+.
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~--~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~pY 60 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCY--LTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEPY 60 (76)
T ss_pred CChhhHHHHHHHHHHhCccccc--eeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecCC
Confidence 5678999999999988754 33 5667888999999999999888 588899999986543
No 136
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=89.46 E-value=2.5 Score=32.94 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=57.7
Q ss_pred CcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE--ECCeecc--cCCccccccccccccceeeee
Q 019968 32 DSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA--RSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 32 ~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li--f~G~~L~--~D~~tL~dygI~~gstV~Lv~ 104 (333)
...+|-|+ .+|+...-....++|+.+|-.-|... |.++...+|+ |--+.+. +.+.||.+.|+....++.+-.
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Vee 79 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILEE 79 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEEc
Confidence 35677887 68899999999999999999999875 7777778886 5567674 246799999999888887643
No 137
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=88.55 E-value=1.5 Score=35.24 Aligned_cols=73 Identities=11% Similarity=0.256 Sum_probs=63.6
Q ss_pred CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968 31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
.+.+.+.|. .+|..+.+.|..+.|...|-..-+...|-..+..++.|+|+.+. -++|-.+++..+|+.|..+.
T Consensus 22 t~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~-~dqTP~dldmEdnd~iEav~ 95 (103)
T COG5227 22 TKHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRID-LDQTPGDLDMEDNDEIEAVT 95 (103)
T ss_pred ccccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecC-CCCChhhcCCccchHHHHHH
Confidence 334666664 67889999999999999999999999999999999999999998 99999999999999876653
No 138
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=88.42 E-value=0.65 Score=35.97 Aligned_cols=59 Identities=22% Similarity=0.340 Sum_probs=46.4
Q ss_pred ecCCCCHHHHHHHHHHhhCC-CCcceEEEECCeecccCCcccccc-ccccccceeeeeeccc
Q 019968 49 VMESDSIASVKLRIQSYNGF-FVKKQKLVFEGRELARSNSRVRDY-GLADGNVLHLVLRLSD 108 (333)
Q Consensus 49 V~~sdTV~~LK~kI~~~~gi-p~~~Q~Lif~G~~L~~D~~tL~dy-gI~~gstV~Lv~rlsd 108 (333)
|.++++|.++++-+...... .-....|.++|..|. +...|++. |+++|.++.++..+..
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~-~~~el~~i~~~~~~~~L~lve~pYt 61 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLD-DFVELSEIEGIKDGCVLELVEEPYT 61 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccC-CchhhhhhhCCCCCcEEEEEecCCC
Confidence 56899999999999887442 344567889999997 88888888 4888888888876643
No 139
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=88.30 E-value=3.8 Score=30.97 Aligned_cols=59 Identities=19% Similarity=0.141 Sum_probs=47.6
Q ss_pred EeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE----CC--eecCCCCcccccCCC
Q 019968 114 VTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC----DG--EELEDQRLITDICKR 173 (333)
Q Consensus 114 Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif----~G--k~LeD~~tL~dy~I~ 173 (333)
|+.++|...++.|+++.|+.++=..|+++.|+. +.+---|.| +| .-|+.+++|.++...
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~-e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLK-EKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTS-SGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCC-CccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 567889999999999999999999999999986 356667878 22 346788889888776
No 140
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=87.73 E-value=5.9 Score=37.31 Aligned_cols=123 Identities=15% Similarity=0.237 Sum_probs=81.6
Q ss_pred CCCcEEEEEE-e--CCeEEE----EEecCCCCHHHHHHHHHHhhCCCCcceEEEEC----C--eecccCCcccccccccc
Q 019968 30 SNDSILIFLS-V--GGSVIP----MRVMESDSIASVKLRIQSYNGFFVKKQKLVFE----G--RELARSNSRVRDYGLAD 96 (333)
Q Consensus 30 ~~~~M~I~Vt-~--~G~~~~----i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~----G--~~L~~D~~tL~dygI~~ 96 (333)
....+.||+| + ..+++. +-|..+++|+++-..|.+..|+|++...++|. + ..+. .+.++..+.+.+
T Consensus 65 ~~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~-~~~t~~~~el~~ 143 (249)
T PF12436_consen 65 PSDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPID-PNQTFEKAELQD 143 (249)
T ss_dssp TTTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE---SSSBHHHTT--T
T ss_pred CCCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcC-CCCchhhcccCC
Confidence 4568999997 2 223322 46899999999999999999999998877775 3 3465 889999999999
Q ss_pred ccceeeeeeccc--------------------ccceeEee---eCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceE
Q 019968 97 GNVLHLVLRLSD--------------------LQAITVTT---VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQE 153 (333)
Q Consensus 97 gstV~Lv~rlsd--------------------~m~I~Vkt---~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~Qr 153 (333)
|+.|-.-...+. -+.|.++- ..+..|.+.+....|-.+|-++|++..++. |..-|
T Consensus 144 GdIi~fQ~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~d--P~~lr 221 (249)
T PF12436_consen 144 GDIICFQRAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVD--PEHLR 221 (249)
T ss_dssp TEEEEEEE--GG--GGGSSS-SHHHHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS---GGGEE
T ss_pred CCEEEEEeccccccccccCCCCHHHHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC--hHHEE
Confidence 999877664431 13344433 233579999999999999999999999987 88877
Q ss_pred EE
Q 019968 154 LI 155 (333)
Q Consensus 154 Li 155 (333)
|.
T Consensus 222 ~~ 223 (249)
T PF12436_consen 222 FF 223 (249)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 141
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=87.65 E-value=4.2 Score=32.07 Aligned_cols=74 Identities=18% Similarity=0.305 Sum_probs=59.0
Q ss_pred CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE--ECCeeccc--CCccccccccccccceeeeee
Q 019968 31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELAR--SNSRVRDYGLADGNVLHLVLR 105 (333)
Q Consensus 31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li--f~G~~L~~--D~~tL~dygI~~gstV~Lv~r 105 (333)
...-+|.|+ .+|+...-....++|+.+|-.-+.. .|.++....|+ |--+.+.. .+.||.+.|+.+.+++.+.-|
T Consensus 3 ~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 3 GPKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQER 81 (82)
T ss_pred CCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEecC
Confidence 345578886 6899999999999999999999998 57788888886 45566542 357999999999999877543
No 142
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=87.52 E-value=3.8 Score=31.97 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=55.8
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE--ECCeecC---CCCcccccCCCCCCEEEE
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE---DQRLITDICKRNEAVIHL 180 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi--f~Gk~Le---D~~tL~dy~I~~gsvIhL 180 (333)
..|.||.++|+...-+...++++..|-.-|... |.+ +...+|+ |=-+.+. .+.||.+.|+.+..+|.+
T Consensus 5 ~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~--~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 5 SKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYP--IDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCC--CCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 467888999998888999999999999999765 666 6777887 6777773 357999999998888876
No 143
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=87.23 E-value=2.5 Score=34.04 Aligned_cols=70 Identities=10% Similarity=0.218 Sum_probs=58.0
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv 181 (333)
+.+-|...+|.+..+.|..+.+...|-.--+...|-. .+.-|++|+|+.++-++|-.|++..+++.|..+
T Consensus 25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~--m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav 94 (103)
T COG5227 25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKN--MSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAV 94 (103)
T ss_pred cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcC--cceeEEEEcceecCCCCChhhcCCccchHHHHH
Confidence 3344444567888999999999999888778888877 888999999999999999999999998877653
No 144
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=86.91 E-value=4.4 Score=31.95 Aligned_cols=70 Identities=20% Similarity=0.268 Sum_probs=54.0
Q ss_pred CcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEEC--Ceecc-------cCCcccccccccccccee
Q 019968 32 DSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE--GRELA-------RSNSRVRDYGLADGNVLH 101 (333)
Q Consensus 32 ~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~--G~~L~-------~D~~tL~dygI~~gstV~ 101 (333)
...+|-++ .+|+.+.-....++||.+|..-|... +-.+....|+.+ -+.+. +.+.||.+.|+.+.+++.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 46778887 68899999999999999999999754 445566777643 36664 246799999999888765
Q ss_pred e
Q 019968 102 L 102 (333)
Q Consensus 102 L 102 (333)
+
T Consensus 82 V 82 (85)
T cd01774 82 V 82 (85)
T ss_pred E
Confidence 5
No 145
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=86.54 E-value=0.9 Score=45.00 Aligned_cols=69 Identities=20% Similarity=0.304 Sum_probs=61.8
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccC-Cccccccccccccceeeeeecccc
Q 019968 41 GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARS-NSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 41 ~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D-~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
..+.+++++...-....++..++..+|++.+.--|+|+++++..+ ...+..||+++++.+.+.-+.++.
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d~ 80 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSDP 80 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCCCC
Confidence 458899999999999999999999999999999999999999855 578999999999999888777665
No 146
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=85.91 E-value=0.32 Score=47.70 Aligned_cols=74 Identities=20% Similarity=0.238 Sum_probs=53.3
Q ss_pred cceeEeeeCCc--EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCC--CCCEEEEEee
Q 019968 110 QAITVTTVCGK--VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKR--NEAVIHLLVR 183 (333)
Q Consensus 110 m~I~Vkt~~Gk--~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~--~gsvIhLv~r 183 (333)
..++++..+.+ ...+..+...||++||..+....--.+=+.+|||+|.||.|.|...++|.-++ +.-+.|||..
T Consensus 10 v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvcn 87 (391)
T KOG4583|consen 10 VTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVCN 87 (391)
T ss_pred eEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhcC
Confidence 34566666654 45566677899999999999876322125889999999999999999887543 3345666654
No 147
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=84.64 E-value=3.9 Score=32.21 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=37.6
Q ss_pred EEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCe
Q 019968 36 IFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR 80 (333)
Q Consensus 36 I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~ 80 (333)
|.|.+.+ ++.|.|.++.+..+|..+|.++.++|++...|.|...
T Consensus 5 vKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 5 VKVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 4444554 9999999999999999999999999999999988543
No 148
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=84.38 E-value=4.2 Score=31.92 Aligned_cols=45 Identities=16% Similarity=0.078 Sum_probs=38.0
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCC-cceEEEEC
Q 019968 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFV-KKQKLVFE 78 (333)
Q Consensus 34 M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~-~~Q~Lif~ 78 (333)
|+|.+++.|..+.+.+.++.+..+|+.+|.++.++.. ....|.|.
T Consensus 1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~ 46 (82)
T cd06407 1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYL 46 (82)
T ss_pred CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEE
Confidence 4677788999999999999999999999999999864 45566663
No 149
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=83.96 E-value=2.3 Score=39.20 Aligned_cols=65 Identities=14% Similarity=0.128 Sum_probs=52.2
Q ss_pred EEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE-ECC-----eecC-CCCcccccCCCCCCEEEEEeecCCcc
Q 019968 122 FEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI-CDG-----EELE-DQRLITDICKRNEAVIHLLVRKSAKV 188 (333)
Q Consensus 122 ~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi-f~G-----k~Le-D~~tL~dy~I~~gsvIhLv~r~~~~v 188 (333)
+..+..++.|++++|.+++-..|.+ ++.+.|. |.| -.|. ++..|..|...+|-.||++-.-...+
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~--~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~~~~~ 86 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTE--AESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSNAQSI 86 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCC--ccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecCcccc
Confidence 3445678999999999999999999 9999986 665 3464 57789999999999999986544333
No 150
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=83.80 E-value=5.9 Score=31.61 Aligned_cols=60 Identities=12% Similarity=0.192 Sum_probs=43.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968 44 VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 44 ~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
.+...++-..++..||..++.+.++.-+...+++.+..|. ++.+|-+.+++-.-+|.+.+
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~-~~k~L~dQcVqgeGlVQlnv 63 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLE-PHKSLVDQCVQGEGLVQLNV 63 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE---TTSBTTTSS----SEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceec-CCccHHHhhccccCEEEEEE
Confidence 4566788889999999999999999999999999998897 99999999998888887753
No 151
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=82.57 E-value=6.9 Score=29.67 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=38.2
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEEC
Q 019968 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE 78 (333)
Q Consensus 34 M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~ 78 (333)
+.|.+.+.+....+.+.++.|..+|+.+|....+++.....|.|.
T Consensus 2 ~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~ 46 (81)
T smart00666 2 VDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ 46 (81)
T ss_pred ccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 456666788999999999999999999999999988666777775
No 152
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=78.10 E-value=12 Score=28.47 Aligned_cols=46 Identities=13% Similarity=0.303 Sum_probs=39.2
Q ss_pred cEEEEEEeCCeEEE-EEecCCCCHHHHHHHHHHhhCCCCcceEEEEC
Q 019968 33 SILIFLSVGGSVIP-MRVMESDSIASVKLRIQSYNGFFVKKQKLVFE 78 (333)
Q Consensus 33 ~M~I~Vt~~G~~~~-i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~ 78 (333)
++.|.+.+.+.... +.+..+.|..+|+.+|+...+.+.....|.|.
T Consensus 1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~ 47 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK 47 (84)
T ss_dssp SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence 45677778888777 99999999999999999999998777778774
No 153
>PRK06437 hypothetical protein; Provisional
Probab=77.04 E-value=14 Score=27.68 Aligned_cols=56 Identities=7% Similarity=0.110 Sum_probs=42.8
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 41 GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 41 ~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
.++...+++..+.||.+|=.+ .|+++..-.+..+|..+. .++-+++|+.|.++.-.
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~------~~~~L~dgD~Veiv~~V 64 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL------EDHNVKKEDDVLILEVF 64 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC------CceEcCCCCEEEEEecc
Confidence 446688888899999877654 578887777788898885 56778899998876533
No 154
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=76.84 E-value=18 Score=27.21 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=42.2
Q ss_pred EEEEeCCe--EEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 36 IFLSVGGS--VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 36 I~Vt~~G~--~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
+.|++.|+ ...+++.++.||.+|-..+ +++...-.+..+|.... .++-+++|+.|.++.-.
T Consensus 5 m~v~vng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~------~~~~l~~gD~Veii~~V 67 (70)
T PRK08364 5 IRVKVIGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL------EDDPVKDGDYVEVIPVV 67 (70)
T ss_pred EEEEEeccccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC------CCcCcCCCCEEEEEccc
Confidence 34444444 5677888899999888665 66665555667888774 36668899988776543
No 155
>PRK06437 hypothetical protein; Provisional
Probab=74.02 E-value=21 Score=26.66 Aligned_cols=54 Identities=11% Similarity=0.026 Sum_probs=41.5
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968 118 CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (333)
Q Consensus 118 ~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~ 182 (333)
.++...++++...||.+|=++ .|++ ++.-.+..+|+.+. .++-+++|+.|.++-
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~--~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLD--EEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCC--CccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 446678888888899887544 4777 77777888999986 567788899988854
No 156
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=73.54 E-value=25 Score=26.40 Aligned_cols=55 Identities=13% Similarity=0.116 Sum_probs=42.9
Q ss_pred eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCc-ceEEEE----CC--eecccCCccccccccc
Q 019968 40 VGGSVIPMRVMESDSIASVKLRIQSYNGFFVK-KQKLVF----EG--RELARSNSRVRDYGLA 95 (333)
Q Consensus 40 ~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~-~Q~Lif----~G--~~L~~D~~tL~dygI~ 95 (333)
++|...+++++++.|+.++=..|+++.|+... -.-|.+ +| .=|+ .+.+|.++...
T Consensus 4 lD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~-~~k~l~~q~~~ 65 (80)
T PF09379_consen 4 LDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLD-LDKKLKKQLKK 65 (80)
T ss_dssp SSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE--SSSBGGGSTBT
T ss_pred cCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceecc-CcccHHHHcCC
Confidence 67889999999999999999999999998743 445777 22 2255 77888888776
No 157
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=73.38 E-value=21 Score=28.43 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=37.6
Q ss_pred cEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEEC
Q 019968 33 SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE 78 (333)
Q Consensus 33 ~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~ 78 (333)
.|+|.|.+.|....+.|.++.+..+|..+|..+.++. ....+.|.
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKyk 46 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMK 46 (86)
T ss_pred cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEE
Confidence 4677777889999999999999999999999999985 34455553
No 158
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=73.00 E-value=4.8 Score=40.04 Aligned_cols=67 Identities=16% Similarity=0.161 Sum_probs=56.7
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCC--CCcccccCCCCCCEEEEEeecCC
Q 019968 118 CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELED--QRLITDICKRNEAVIHLLVRKSA 186 (333)
Q Consensus 118 ~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD--~~tL~dy~I~~gsvIhLv~r~~~ 186 (333)
..+.+++.|...-....++..++...|++ .+.--|+|+++.+.+ ...+..||+..++++.+--+.+.
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~--~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d 79 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIV--YDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSD 79 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcc--cchhhcccCCCccccchhhhhhhcccccceeEeccCCCCC
Confidence 45678899999999999999999999999 888899999999954 57899999999999887554443
No 159
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=72.06 E-value=10 Score=29.08 Aligned_cols=45 Identities=20% Similarity=0.052 Sum_probs=39.3
Q ss_pred eeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECC
Q 019968 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG 158 (333)
Q Consensus 112 I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~G 158 (333)
+.|..++|+...+.|.|..||.++-+++.++.|+. +..-.|.+.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~--~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLN--PECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCC--HHHEEEEEec
Confidence 45678899999999999999999999999999998 7777777654
No 160
>smart00455 RBD Raf-like Ras-binding domain.
Probab=71.79 E-value=11 Score=28.56 Aligned_cols=44 Identities=16% Similarity=-0.009 Sum_probs=39.2
Q ss_pred eEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECC
Q 019968 113 TVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG 158 (333)
Q Consensus 113 ~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~G 158 (333)
.|..++|+...+.+.|..|+.++=.++.++.|+. ++.-.+.+.|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~--~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLN--PECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCC--HHHEEEEEcC
Confidence 4567889999999999999999999999999998 8888888755
No 161
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=71.45 E-value=16 Score=27.34 Aligned_cols=60 Identities=12% Similarity=0.204 Sum_probs=42.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhhCC----CCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 43 SVIPMRVMESDSIASVKLRIQSYNGF----FVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 43 ~~~~i~V~~sdTV~~LK~kI~~~~gi----p~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
....+++..+.||.+|...+....+- ......+..+|+... .++-+++|+.|.++...++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~------~~~~l~~gD~v~i~ppv~G 79 (80)
T cd00754 16 DEEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR------LDTPLKDGDEVAIIPPVSG 79 (80)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC------CCcccCCCCEEEEeCCCCC
Confidence 44677887899999999999887432 223445667787775 3567889999988765543
No 162
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=71.41 E-value=11 Score=39.76 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=43.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHhc--CCCC----CCCceEEEE----CCe-ecCCC-------------CcccccCCCCC
Q 019968 120 KVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC----DGE-ELEDQ-------------RLITDICKRNE 175 (333)
Q Consensus 120 k~~~l~V~~sdTV~~LK~~I~~~~--Gip~----~~~~QrLif----~Gk-~LeD~-------------~tL~dy~I~~g 175 (333)
..+++.|-..|||.++|+||-+.. +.|. .+++.-|.+ .|+ .|.|. +||+.|+|.+|
T Consensus 202 ~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 281 (539)
T PF08337_consen 202 EEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPDG 281 (539)
T ss_dssp TCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--TT
T ss_pred ceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCCC
Confidence 458899999999999999998862 4431 134445554 233 34332 57899999999
Q ss_pred CEEEEEeecC
Q 019968 176 AVIHLLVRKS 185 (333)
Q Consensus 176 svIhLv~r~~ 185 (333)
+++-|+.+..
T Consensus 282 a~vaLv~k~~ 291 (539)
T PF08337_consen 282 ATVALVPKQH 291 (539)
T ss_dssp EEEEEEES--
T ss_pred ceEEEeeccc
Confidence 9999988763
No 163
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=70.96 E-value=21 Score=28.50 Aligned_cols=61 Identities=20% Similarity=0.317 Sum_probs=43.6
Q ss_pred EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEee
Q 019968 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (333)
Q Consensus 121 ~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r 183 (333)
.+...++-...+..||..++.+.++. .+...+...+..|+++++|.|-|++-..++.+.+-
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~--L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGIS--LSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S----SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCC--cCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 34566777889999999999999998 88888888888899999999999998888887653
No 164
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=70.76 E-value=8.8 Score=40.31 Aligned_cols=79 Identities=23% Similarity=0.358 Sum_probs=50.2
Q ss_pred CCcEEEEEEe---CCeEEEEEecCCCCHHHHHHHHHHh--hCCCCcc------eEE--EEC--Ce-ecccCC--------
Q 019968 31 NDSILIFLSV---GGSVIPMRVMESDSIASVKLRIQSY--NGFFVKK------QKL--VFE--GR-ELARSN-------- 86 (333)
Q Consensus 31 ~~~M~I~Vt~---~G~~~~i~V~~sdTV~~LK~kI~~~--~gip~~~------Q~L--if~--G~-~L~~D~-------- 86 (333)
..++.++|.. ....+++.|-..|||.++|.||-+. .+.|.++ .-| ..+ |+ .|.+.+
T Consensus 187 ~~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~ 266 (539)
T PF08337_consen 187 YKTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGG 266 (539)
T ss_dssp S-EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETT
T ss_pred eEEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCC
Confidence 5678888743 2356899999999999999999875 4555443 233 222 23 454222
Q ss_pred ----ccccccccccccceeeeeecccc
Q 019968 87 ----SRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 87 ----~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
.||+.|+|.+|+++-|+.+..+.
T Consensus 267 wkrLNTL~HY~V~dga~vaLv~k~~~~ 293 (539)
T PF08337_consen 267 WKRLNTLAHYKVPDGATVALVPKQHSS 293 (539)
T ss_dssp EEE--BHHHHT--TTEEEEEEES----
T ss_pred ceEeccHhhcCCCCCceEEEeeccccc
Confidence 38899999999999999877543
No 165
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=68.11 E-value=26 Score=25.69 Aligned_cols=59 Identities=12% Similarity=0.203 Sum_probs=41.3
Q ss_pred EEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeee
Q 019968 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (333)
Q Consensus 38 Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~r 105 (333)
|+..|+.+.+ + ..|+.+|...+ ++++..-.+..+|..+. ...+.+.-+++|+.|.++.-
T Consensus 3 i~~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~--~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 3 LFVNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH--KEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred EEECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC--HHHcCccccCCCCEEEEEEe
Confidence 4567777776 3 45898888754 56655455678888875 34667888999999887653
No 166
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=67.85 E-value=20 Score=26.94 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=35.5
Q ss_pred EEEEEeCCeEEEEEec-CCCCHHHHHHHHHHhhCCCCcceEEEEC
Q 019968 35 LIFLSVGGSVIPMRVM-ESDSIASVKLRIQSYNGFFVKKQKLVFE 78 (333)
Q Consensus 35 ~I~Vt~~G~~~~i~V~-~sdTV~~LK~kI~~~~gip~~~Q~Lif~ 78 (333)
.|.+.+.|....+.+. .+.|..+|+.+|.+..+++.....+.|.
T Consensus 2 ~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~ 46 (81)
T cd05992 2 RVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP 46 (81)
T ss_pred cEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee
Confidence 4556677888889988 9999999999999999987655556553
No 167
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=64.73 E-value=19 Score=28.72 Aligned_cols=34 Identities=12% Similarity=0.223 Sum_probs=31.2
Q ss_pred eEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCC
Q 019968 113 TVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREF 146 (333)
Q Consensus 113 ~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip 146 (333)
-+++..|+...+.+.++.++.+|++.|.++.|+.
T Consensus 4 K~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d 37 (86)
T cd06409 4 KFKDPKGRVHRFRLRPSESLEELRTLISQRLGDD 37 (86)
T ss_pred EeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCc
Confidence 4578899999999999999999999999999976
No 168
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=64.53 E-value=29 Score=27.33 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=31.8
Q ss_pred EEEEEeCCeEEEEEecC--CCCHHHHHHHHHHhhCCC
Q 019968 35 LIFLSVGGSVIPMRVME--SDSIASVKLRIQSYNGFF 69 (333)
Q Consensus 35 ~I~Vt~~G~~~~i~V~~--sdTV~~LK~kI~~~~gip 69 (333)
+|.+++.|.+..+.+++ +.|..+|+..|....+++
T Consensus 2 ~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 2 NLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred EEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 56678999999999999 779999999999999999
No 169
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=64.14 E-value=15 Score=27.06 Aligned_cols=48 Identities=13% Similarity=0.284 Sum_probs=36.0
Q ss_pred EEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeee
Q 019968 46 PMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (333)
Q Consensus 46 ~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~r 105 (333)
.+++..+.|..+||.++... .-.++++|-+.. + ++-+++|+.|.++-|
T Consensus 9 ~~~~~~~~tl~~lr~~~k~~------~DI~I~NGF~~~-~-----d~~L~e~D~v~~Ikk 56 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKPD------ADIVILNGFPTK-E-----DIELKEGDEVFLIKK 56 (57)
T ss_pred EEEcCCCcCHHHHHHhhCCC------CCEEEEcCcccC-C-----ccccCCCCEEEEEeC
Confidence 46677889999999886643 337899999887 4 566678888877654
No 170
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=63.49 E-value=53 Score=26.85 Aligned_cols=74 Identities=22% Similarity=0.225 Sum_probs=49.9
Q ss_pred CcEEEEEEe--CCeEEEEEecCCCCHHHHHHHHHHh------hCCCCc-ceEEEECCee--cccCCccccccc-----cc
Q 019968 32 DSILIFLSV--GGSVIPMRVMESDSIASVKLRIQSY------NGFFVK-KQKLVFEGRE--LARSNSRVRDYG-----LA 95 (333)
Q Consensus 32 ~~M~I~Vt~--~G~~~~i~V~~sdTV~~LK~kI~~~------~gip~~-~Q~Lif~G~~--L~~D~~tL~dyg-----I~ 95 (333)
..+.|.|.. ....+++.+++++|+.++.+.+-.+ ..-+++ ...|--.|+. |. .+..|.+|. ++
T Consensus 16 ~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~-~~~~L~~~~yIr~cl~ 94 (108)
T smart00144 16 NKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLL-GDHPLGSFEYIRNCLK 94 (108)
T ss_pred CeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEe-CCeeeechHHHHHHHh
Confidence 355555543 3477999999999999998877665 112223 4566667764 66 677787776 36
Q ss_pred cccceeeeeec
Q 019968 96 DGNVLHLVLRL 106 (333)
Q Consensus 96 ~gstV~Lv~rl 106 (333)
.|..++|++..
T Consensus 95 ~~~~~~L~L~~ 105 (108)
T smart00144 95 NGREPHLVLMT 105 (108)
T ss_pred cCCCceEEEEe
Confidence 67777777643
No 171
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=62.82 E-value=37 Score=25.35 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=40.0
Q ss_pred EEEEEEecCCchHHHHHHHHHhcCC----CCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEee
Q 019968 121 VFEFHVERGRNVGYVKQQIAKKGRE----FVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (333)
Q Consensus 121 ~~~l~V~~sdTV~~LK~~I~~~~Gi----p~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r 183 (333)
...++++...||.+|.+.+....+. . .....+..+|+... .++-+++|+.|.++-.
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~--~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~pp 76 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEEL--LARVRIAVNGEYVR-----LDTPLKDGDEVAIIPP 76 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhh--hhcEEEEECCeEcC-----CCcccCCCCEEEEeCC
Confidence 4567777789999999999887542 1 23345556888776 3566888999988643
No 172
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=62.59 E-value=3.7 Score=40.45 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=53.7
Q ss_pred CCcEEEEEE---eCCeEEEEEecCCCCHHHHHHHHHHhhC-C-CCcceEEEECCeecccCCcccccccccc--ccceeee
Q 019968 31 NDSILIFLS---VGGSVIPMRVMESDSIASVKLRIQSYNG-F-FVKKQKLVFEGRELARSNSRVRDYGLAD--GNVLHLV 103 (333)
Q Consensus 31 ~~~M~I~Vt---~~G~~~~i~V~~sdTV~~LK~kI~~~~g-i-p~~~Q~Lif~G~~L~~D~~tL~dygI~~--gstV~Lv 103 (333)
.....++++ ..-+.++|..+...||++||.-+..-.- - -...|||+|.|+.|. |...+.+.-++. ..++||+
T Consensus 7 e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgklll-d~qcl~d~lrkq~k~Hv~hlv 85 (391)
T KOG4583|consen 7 EFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLL-DHQCLTDWLRKQVKEHVKHLV 85 (391)
T ss_pred CcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccc-cchhHHHHHHHHHHHHHHHHh
Confidence 345666665 2346677888899999999998876421 1 234799999999998 999999887643 4566766
Q ss_pred ee
Q 019968 104 LR 105 (333)
Q Consensus 104 ~r 105 (333)
..
T Consensus 86 cn 87 (391)
T KOG4583|consen 86 CN 87 (391)
T ss_pred cC
Confidence 43
No 173
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=62.57 E-value=34 Score=25.22 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=38.0
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv 181 (333)
|+|+|. | ..++++...|...||.++. ++.-.++|+|=...+ |+-+++|+.|.+.
T Consensus 1 M~I~vN---~--k~~~~~~~~tl~~lr~~~k--------~~~DI~I~NGF~~~~-----d~~L~e~D~v~~I 54 (57)
T PF14453_consen 1 MKIKVN---E--KEIETEENTTLFELRKESK--------PDADIVILNGFPTKE-----DIELKEGDEVFLI 54 (57)
T ss_pred CEEEEC---C--EEEEcCCCcCHHHHHHhhC--------CCCCEEEEcCcccCC-----ccccCCCCEEEEE
Confidence 566663 3 4677888889999998754 333478999998866 4555667777764
No 174
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=62.53 E-value=32 Score=26.16 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=46.5
Q ss_pred eCCcEEEEEEecCCchHHHHHHHHHhcC---CCCCCCceEEE-ECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968 117 VCGKVFEFHVERGRNVGYVKQQIAKKGR---EFVDLKNQELI-CDGEELEDQRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 117 ~~Gk~~~l~V~~sdTV~~LK~~I~~~~G---ip~~~~~QrLi-f~Gk~LeD~~tL~dy~I~~gsvIhLv~r~ 184 (333)
.+|+...++.....-.--+.++--+..| -| ++.=.|- -+|..|+-++.+.|||+.++-++.|.++.
T Consensus 3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP--~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQP--PENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred eCCCceeeecCCCCcchHHHHHHHhhccccCCC--cccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 3577777777766666666665555443 45 5554454 37888888999999999999998887653
No 175
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=62.41 E-value=22 Score=27.26 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=36.4
Q ss_pred eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECC
Q 019968 40 VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG 79 (333)
Q Consensus 40 ~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G 79 (333)
.+|....+.+.|+.||.++=.++.++.|+.+..-.|++.|
T Consensus 7 Png~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 7 PNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred cCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 5778889999999999999999999999999988888764
No 176
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=62.06 E-value=34 Score=28.60 Aligned_cols=52 Identities=12% Similarity=0.181 Sum_probs=41.0
Q ss_pred CCCcEEEEEEeCC-----eEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCee
Q 019968 30 SNDSILIFLSVGG-----SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE 81 (333)
Q Consensus 30 ~~~~M~I~Vt~~G-----~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~ 81 (333)
....++|.++..| +.-.+.|++++|++-+...+.+..+++++.|...|=...
T Consensus 27 ~~~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~s 83 (116)
T KOG3439|consen 27 NIRKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNS 83 (116)
T ss_pred CcceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCc
Confidence 3466777776444 446678999999999999999999999998887774443
No 177
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=60.84 E-value=64 Score=28.18 Aligned_cols=63 Identities=14% Similarity=0.168 Sum_probs=46.2
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEEC---C---eecCCCCcccccCCC
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD---G---EELEDQRLITDICKR 173 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~---G---k~LeD~~tL~dy~I~ 173 (333)
+.+.|...+|....+.++++.|++++-..+..+.|++ ....-.|.+- + ..++...++.+....
T Consensus 4 ~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~-~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~ 72 (207)
T smart00295 4 RVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIR-ESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK 72 (207)
T ss_pred EEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCC-ccceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence 4567788899999999999999999999999999986 1333345441 1 235556677766543
No 178
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=60.76 E-value=43 Score=24.47 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=38.3
Q ss_pred eeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968 116 TVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (333)
Q Consensus 116 t~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~ 182 (333)
+.+|+.+.+ + ..|+.+|.+.+ +++ ++...+..+|+.+. .....+.-+++|+.|.++-
T Consensus 4 ~~Ng~~~~~--~-~~tl~~Ll~~l----~~~--~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 4 FVNGETLQT--E-ATTLALLLAEL----DYE--GNWLATAVNGELVH-KEARAQFVLHEGDRIEILS 60 (65)
T ss_pred EECCeEEEc--C-cCcHHHHHHHc----CCC--CCeEEEEECCEEcC-HHHcCccccCCCCEEEEEE
Confidence 346777776 3 35888887654 555 54455668888774 3345567788999998864
No 179
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=60.17 E-value=28 Score=25.52 Aligned_cols=60 Identities=20% Similarity=0.302 Sum_probs=42.0
Q ss_pred EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 39 t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
+..|+.++ +..+.||.+|..++ +++...-.+..+|+.+. .....++-+++|+.|.++...
T Consensus 3 ~iNg~~~~--~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~--~~~~~~~~L~~gD~V~ii~~v 62 (65)
T cd00565 3 TVNGEPRE--VEEGATLAELLEEL----GLDPRGVAVALNGEIVP--RSEWASTPLQDGDRIEIVTAV 62 (65)
T ss_pred EECCeEEE--cCCCCCHHHHHHHc----CCCCCcEEEEECCEEcC--HHHcCceecCCCCEEEEEEec
Confidence 34455544 45678999888765 46777677778998886 235666789999999877543
No 180
>smart00455 RBD Raf-like Ras-binding domain.
Probab=59.72 E-value=28 Score=26.37 Aligned_cols=40 Identities=8% Similarity=0.066 Sum_probs=36.7
Q ss_pred eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECC
Q 019968 40 VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG 79 (333)
Q Consensus 40 ~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G 79 (333)
.+|+...+.+.|+.|+.++=.++.++.|+.++.-.+++.|
T Consensus 7 P~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 7 PDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 5788999999999999999999999999999988888865
No 181
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=59.45 E-value=27 Score=37.87 Aligned_cols=67 Identities=18% Similarity=0.150 Sum_probs=48.3
Q ss_pred eeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeec--CCCCcccccCCCCCCEEEEEeecCC
Q 019968 116 TVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEEL--EDQRLITDICKRNEAVIHLLVRKSA 186 (333)
Q Consensus 116 t~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~L--eD~~tL~dy~I~~gsvIhLv~r~~~ 186 (333)
+.++..+.+.++++.|+..++++|...+|+| ...|.|+|.|... +|..+-.--+ -.+-+.++...+.
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgip--e~~qeLL~e~~~~h~~~~~Q~~~dg--~~~~l~l~~~~~~ 389 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIP--EGKQELLFEGGLSHLEDSAQCIPDG--LDSPLYLVSDQDK 389 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCC--CccceeeeecCccccCcccccCCCC--CCCceEEEecCCC
Confidence 4456678899999999999999999999999 9999999987644 4422211111 3355777666543
No 182
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=58.14 E-value=34 Score=26.84 Aligned_cols=35 Identities=9% Similarity=0.208 Sum_probs=32.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEEC
Q 019968 44 VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE 78 (333)
Q Consensus 44 ~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~ 78 (333)
++.|.+.++.+.++|..+|.++...+++.-+|.|.
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 67889999999999999999999999999999884
No 183
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=57.73 E-value=71 Score=23.87 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=38.8
Q ss_pred CCc--EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968 118 CGK--VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (333)
Q Consensus 118 ~Gk--~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~ 182 (333)
+|+ ...++++...||.+|-+.+ +++ +..-.+..+|+.... ++-+++|+.|.++-
T Consensus 10 ng~~~~~~~~~~~~~tv~~ll~~l----~~~--~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~ 65 (70)
T PRK08364 10 IGRGIEKEIEWRKGMKVADILRAV----GFN--TESAIAKVNGKVALE-----DDPVKDGDYVEVIP 65 (70)
T ss_pred eccccceEEEcCCCCcHHHHHHHc----CCC--CccEEEEECCEECCC-----CcCcCCCCEEEEEc
Confidence 454 5677888888999887654 566 555566689998743 66678888888753
No 184
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=57.55 E-value=37 Score=34.86 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=55.9
Q ss_pred EEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCC----CCcceEEE---ECCeecccCCccccccccccccceeeeeecc
Q 019968 35 LIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGF----FVKKQKLV---FEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (333)
Q Consensus 35 ~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gi----p~~~Q~Li---f~G~~L~~D~~tL~dygI~~gstV~Lv~rls 107 (333)
+|+|.-..+...+-+..+.+|.++--.|.+..+- +.....+. .+|.+|+ .+.+|.+.+|.||++++|..+..
T Consensus 4 RVtV~~~~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~-~~~sL~~~gV~DG~~L~L~p~~~ 82 (452)
T TIGR02958 4 RVTVLAGRRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLD-PDASLAEAGVRDGELLVLVPASA 82 (452)
T ss_pred EEEEeeCCeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCC-CCCCHHHcCCCCCCeEEEeeCCC
Confidence 5666555567888888999999999999988764 22233343 3688998 99999999999999999987544
Q ss_pred c
Q 019968 108 D 108 (333)
Q Consensus 108 d 108 (333)
.
T Consensus 83 ~ 83 (452)
T TIGR02958 83 T 83 (452)
T ss_pred C
Confidence 3
No 185
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=57.32 E-value=47 Score=25.30 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=43.4
Q ss_pred EEEEEE-------eCC-eEEEEEecCCCCHHHHHHHHHHhhC-CCC--cceEEEECCeecccCCccccccccccccceee
Q 019968 34 ILIFLS-------VGG-SVIPMRVMESDSIASVKLRIQSYNG-FFV--KKQKLVFEGRELARSNSRVRDYGLADGNVLHL 102 (333)
Q Consensus 34 M~I~Vt-------~~G-~~~~i~V~~sdTV~~LK~kI~~~~g-ip~--~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~L 102 (333)
|+|.|+ ..| ....+++..+.|+.+|+..+..... +.. ..-.+..+|+... .++-+++|+.|-+
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~------~~~~l~dgDeVai 75 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT------ESAALKDGDELAI 75 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC------CCcCcCCCCEEEE
Confidence 566663 234 5677888889999999999976531 111 1112455666643 3456788999887
Q ss_pred eeeccc
Q 019968 103 VLRLSD 108 (333)
Q Consensus 103 v~rlsd 108 (333)
....++
T Consensus 76 ~PpvsG 81 (82)
T PLN02799 76 IPPISG 81 (82)
T ss_pred eCCCCC
Confidence 765443
No 186
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=56.54 E-value=55 Score=24.11 Aligned_cols=62 Identities=13% Similarity=0.144 Sum_probs=47.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCC--CCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 44 VIPMRVMESDSIASVKLRIQSYNGF--FVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 44 ~~~i~V~~sdTV~~LK~kI~~~~gi--p~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
...+.+..+.||.+|...+.....- ....-.+..+|+... + ...++-+++|+.|.++...++
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~-~--~~~~~~l~~gD~V~i~ppvsG 76 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVP-D--DGLDTPLKDGDEVAILPPVSG 76 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEG-G--GTTTSBEETTEEEEEEESTST
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcC-C--ccCCcCcCCCCEEEEECCCCC
Confidence 6678889999999999999887421 124556778898887 4 577888999999988765544
No 187
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=56.22 E-value=19 Score=36.12 Aligned_cols=68 Identities=13% Similarity=0.213 Sum_probs=51.8
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCC-CcceEEE--ECCeecccCCcccccccccccccee
Q 019968 34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFF-VKKQKLV--FEGRELARSNSRVRDYGLADGNVLH 101 (333)
Q Consensus 34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip-~~~Q~Li--f~G~~L~~D~~tL~dygI~~gstV~ 101 (333)
-.|-|+ .+|..+-..++.+.||.+++..|.....-. ...+.|+ |--++|.+++.||++.|+.+-..|.
T Consensus 306 TsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlvq 377 (380)
T KOG2086|consen 306 TSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLVQ 377 (380)
T ss_pred ceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhhh
Confidence 345554 467888888999999999999999875543 3345565 5578999889999999998766553
No 188
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=54.80 E-value=50 Score=24.81 Aligned_cols=38 Identities=16% Similarity=0.095 Sum_probs=32.1
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEEC
Q 019968 118 CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD 157 (333)
Q Consensus 118 ~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~ 157 (333)
+|..+.+.+.+..|-.+|+.+|+.+.+.+ .....|-|.
T Consensus 9 ~~~~~~~~~~~~~s~~dL~~~i~~~~~~~--~~~~~l~Y~ 46 (81)
T smart00666 9 GGETRRLSVPRDISFEDLRSKVAKRFGLD--NQSFTLKYQ 46 (81)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHhCCC--CCCeEEEEE
Confidence 56788899999999999999999999977 566677665
No 189
>KOG4261 consensus Talin [Cytoskeleton]
Probab=54.63 E-value=49 Score=36.34 Aligned_cols=108 Identities=18% Similarity=0.125 Sum_probs=81.7
Q ss_pred EEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCC---CCcceEEEEC------CeecccCCccccccccccccceeeeee
Q 019968 35 LIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGF---FVKKQKLVFE------GRELARSNSRVRDYGLADGNVLHLVLR 105 (333)
Q Consensus 35 ~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gi---p~~~Q~Lif~------G~~L~~D~~tL~dygI~~gstV~Lv~r 105 (333)
.+.|...+-..+|.+.|+.+|.+-=+-|.+++-. -+....|+.. |-.|+ .+++|.+|=+.+++++.-.-+
T Consensus 5 sl~i~~~~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle-~grt~~~y~~~n~d~~ey~~k 83 (1003)
T KOG4261|consen 5 SLKISSANVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLE-AGRTLDYYMLRNGDTLEYKRK 83 (1003)
T ss_pred EEEEEecceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeec-CCccHHHHHHhcccccchhhh
Confidence 3444445777889999999999877777665321 1455555542 44576 889999999999999765433
Q ss_pred cccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCC
Q 019968 106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREF 146 (333)
Q Consensus 106 lsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip 146 (333)
...+-|+.++|...++-|+.+.+|..|---|..+.||.
T Consensus 84 ---~r~lkvrmldg~vkti~vd~sq~v~~L~~~ic~~igIt 121 (1003)
T KOG4261|consen 84 ---QRPLKVRMLDGAVKTIMVDDSQPVSQLMMTICNKIGIT 121 (1003)
T ss_pred ---cccceeeecccccceeeecccccHHHHHHHHHhccCcc
Confidence 23466789999999999999999999999999999976
No 190
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.54 E-value=20 Score=35.45 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=44.7
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCcceEEEEC---Ceec----ccCCccccccccccccceeee
Q 019968 45 IPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE---GREL----ARSNSRVRDYGLADGNVLHLV 103 (333)
Q Consensus 45 ~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~---G~~L----~~D~~tL~dygI~~gstV~Lv 103 (333)
-..-|.-.-||.++|.++..+.|+.+.+++|++- |+.- .+-+..|-+|+|++|+.+.+.
T Consensus 350 ~s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 350 ASGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred cceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 3455666778999999999999999999999873 4331 124567888889999876543
No 191
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=53.86 E-value=79 Score=24.28 Aligned_cols=61 Identities=15% Similarity=0.227 Sum_probs=40.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhhCC-----C------CcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 43 SVIPMRVMESDSIASVKLRIQSYNGF-----F------VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 43 ~~~~i~V~~sdTV~~LK~kI~~~~gi-----p------~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
....+++. +.||.+|...+..+..- - .....+..+|+... .+.. +-+++|+.|.+....++
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~-~~~~---~~l~dgdev~i~PpvsG 87 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVD-WGLG---TELKDGDVVAIFPPVSG 87 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecC-ccCC---CCCCCCCEEEEeCCCcC
Confidence 45677776 89999999999877431 0 11244556777765 3221 67899999988776554
No 192
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=53.73 E-value=18 Score=36.35 Aligned_cols=67 Identities=12% Similarity=0.175 Sum_probs=52.3
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcC-CCCCCCceEEE--ECCeecC-CCCcccccCCCCCCEE
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGR-EFVDLKNQELI--CDGEELE-DQRLITDICKRNEAVI 178 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~G-ip~~~~~QrLi--f~Gk~Le-D~~tL~dy~I~~gsvI 178 (333)
-.|.|+..+|+.....++.+.||.+++.-|..... -+ ...+.|+ |--++|. |..||.+-|+.+-.++
T Consensus 306 TsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~--~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 306 TSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDS--STYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred ceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCc--CCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 45778999999999999999999999999998764 33 3456665 6778884 5789999998655443
No 193
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=53.63 E-value=30 Score=37.49 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=41.2
Q ss_pred EEEEE--EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCee
Q 019968 34 ILIFL--SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE 81 (333)
Q Consensus 34 M~I~V--t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~ 81 (333)
+.++| ..+...+.+-++++.|+..++.+|...+|+|...|.|.|.|..
T Consensus 314 ~vvhiFs~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~ 363 (732)
T KOG4250|consen 314 KVVHIFSMVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGL 363 (732)
T ss_pred heeEEEeeccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCc
Confidence 34444 3567889999999999999999999999999999999998654
No 194
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=53.09 E-value=1.1e+02 Score=24.46 Aligned_cols=61 Identities=16% Similarity=0.235 Sum_probs=41.8
Q ss_pred EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE----CCee-cCC-CCcccccCCCCCCEEEEEeec
Q 019968 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC----DGEE-LED-QRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 121 ~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif----~Gk~-LeD-~~tL~dy~I~~gsvIhLv~r~ 184 (333)
..+-.+...|||..++..+.+.+.++ ..-||-- ++.+ |.+ ..|+.|-++..|-+|.+-.|.
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~i~---~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn 81 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFNIQ---EETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERN 81 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT-T---S-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--
T ss_pred HhHhhccccChHHHHHHHHHHHhCCC---ccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeec
Confidence 56778889999999999999999985 4567742 3443 544 579999999999988886664
No 195
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=52.67 E-value=94 Score=24.45 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=46.4
Q ss_pred CcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968 32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 32 ~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
..+.+.++..|+.+.+ ..+.||.+|=.. .++++..--+..+|..+. ...+.++-+++|+.|.++-
T Consensus 15 ~~~~m~I~VNG~~~~~--~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp--r~~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 15 AMVLITISINDQSIQV--DISSSLAQIIAQ----LSLPELGCVFAINNQVVP--RSEWQSTVLSSGDAISLFQ 79 (84)
T ss_pred CCceEEEEECCeEEEc--CCCCcHHHHHHH----cCCCCceEEEEECCEEeC--HHHcCcccCCCCCEEEEEE
Confidence 3445566677776555 567788876654 477776666778999985 3567888899999987764
No 196
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=52.20 E-value=12 Score=30.46 Aligned_cols=39 Identities=18% Similarity=0.360 Sum_probs=27.4
Q ss_pred EEEECCeecCCCCcccccCCCCCCEEEEEeecCCcccccc
Q 019968 153 ELICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVRAKP 192 (333)
Q Consensus 153 rLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~~v~t~~ 192 (333)
.|-|+|++|..+.+|+|| +..+..-.++++....-.+.+
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKiivKl~~~g~g~P 41 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKIIVKLQKRGQGPP 41 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEEEEeccCCCCCC
Confidence 578999999999999999 455555566666544433333
No 197
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=52.01 E-value=69 Score=24.24 Aligned_cols=60 Identities=8% Similarity=0.139 Sum_probs=41.0
Q ss_pred eEEEEEecCC-CCHHHHHHHHHHhhC-CC--CcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 43 SVIPMRVMES-DSIASVKLRIQSYNG-FF--VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 43 ~~~~i~V~~s-dTV~~LK~kI~~~~g-ip--~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
....+++..+ .||.+|+..+..... +- .....+..+|+... + +.-+++|+.|.+....++
T Consensus 16 ~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~-~-----~~~l~dgDevai~PpvsG 79 (80)
T TIGR01682 16 DEETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVT-D-----DALLNEGDEVAFIPPVSG 79 (80)
T ss_pred CeEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcC-C-----CcCcCCCCEEEEeCCCCC
Confidence 3457888876 899999999988753 11 12234556777665 3 567889999888765543
No 198
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=51.62 E-value=39 Score=26.62 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=33.7
Q ss_pred EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCe
Q 019968 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE 159 (333)
Q Consensus 121 ~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk 159 (333)
++.++|.+.-+...|..+|.++.++| ++.-.|.|.-+
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~--~e~i~LsYkde 48 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELP--AEHITLSYKSE 48 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCC--chhcEEEeccC
Confidence 88999999999999999999999999 88889998543
No 199
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=51.44 E-value=50 Score=24.29 Aligned_cols=58 Identities=24% Similarity=0.246 Sum_probs=41.4
Q ss_pred EEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 38 Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
++..|+.+.+ .++.|+.+|=.. .+++...--+.++|..+.++++. .+ +++|+.|.++.
T Consensus 3 i~vNG~~~~~--~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~~--~~-L~~gD~ieIv~ 60 (65)
T PRK05863 3 VVVNEEQVEV--DEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDWA--TK-LRDGARLEVVT 60 (65)
T ss_pred EEECCEEEEc--CCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHhh--hh-cCCCCEEEEEe
Confidence 4456666555 467788766543 57888888888999988755554 46 99999987764
No 200
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=49.57 E-value=59 Score=23.69 Aligned_cols=59 Identities=17% Similarity=0.287 Sum_probs=40.4
Q ss_pred eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 40 VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 40 ~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
..|+.+.+ ..+.||.+|...+ ++++..-.+..+|..+. .....++-+++|+.|.++.-.
T Consensus 3 iNg~~~~~--~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~--~~~~~~~~L~~gD~veii~~V 61 (64)
T TIGR01683 3 VNGEPVEV--EDGLTLAALLESL----GLDPRRVAVAVNGEIVP--RSEWDDTILKEGDRIEIVTFV 61 (64)
T ss_pred ECCeEEEc--CCCCcHHHHHHHc----CCCCCeEEEEECCEEcC--HHHcCceecCCCCEEEEEEec
Confidence 34555444 5677899888754 56666666678888885 234667789999998876543
No 201
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=49.48 E-value=41 Score=26.79 Aligned_cols=38 Identities=21% Similarity=0.140 Sum_probs=32.8
Q ss_pred eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCc---ceEEEE
Q 019968 40 VGGSVIPMRVMESDSIASVKLRIQSYNGFFVK---KQKLVF 77 (333)
Q Consensus 40 ~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~---~Q~Lif 77 (333)
..|+.+-+.+.|+..+.+|+..|.++.|+... ...|.|
T Consensus 8 ~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 8 PKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred CCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 68999999999999999999999999998863 445555
No 202
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=48.83 E-value=63 Score=24.44 Aligned_cols=51 Identities=14% Similarity=0.040 Sum_probs=36.1
Q ss_pred eeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE--CCeecCCC
Q 019968 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC--DGEELEDQ 164 (333)
Q Consensus 112 I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif--~Gk~LeD~ 164 (333)
+.|..++|+...+.|.+..||.++-.++.++.|+. +..-.+.. ..+.|.-+
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~--~~~~~V~~~~~~k~l~~~ 55 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLN--PECCDVRLVGEKKPLDWD 55 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT----CCCEEEEEEEEEEEE-TT
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCC--HHHEEEEEcCCCccccCC
Confidence 45667889999999999999999999999999988 66554443 33445433
No 203
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=48.51 E-value=5.9 Score=38.67 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=0.0
Q ss_pred CCCCCcEEEEEE-eCCeEEEE--Eec-C--CCCHHHHHHHHHH----------hhCCCCcceE-----EEECCeecccCC
Q 019968 28 KLSNDSILIFLS-VGGSVIPM--RVM-E--SDSIASVKLRIQS----------YNGFFVKKQK-----LVFEGRELARSN 86 (333)
Q Consensus 28 ~~~~~~M~I~Vt-~~G~~~~i--~V~-~--sdTV~~LK~kI~~----------~~gip~~~Q~-----Lif~G~~L~~D~ 86 (333)
+.+...+.|+++ +-.-.+.| ... + +.||.++|..+++ .+++|.++.+ |.|+-+++. |.
T Consensus 73 Pgs~~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~-~~ 151 (309)
T PF12754_consen 73 PGSSKSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVG-DS 151 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCC-Cc
Confidence 445667777774 32233333 222 3 6899999999999 8999999999 999999997 88
Q ss_pred ccccccccc
Q 019968 87 SRVRDYGLA 95 (333)
Q Consensus 87 ~tL~dygI~ 95 (333)
.+|.+..-.
T Consensus 152 ktl~e~l~~ 160 (309)
T PF12754_consen 152 KTLAEVLAD 160 (309)
T ss_dssp ---------
T ss_pred CcHHHHHhc
Confidence 888887643
No 204
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=48.48 E-value=85 Score=25.08 Aligned_cols=43 Identities=7% Similarity=0.193 Sum_probs=33.3
Q ss_pred EEEEEeCCeEEEEEecC-----CCCHHHHHHHHHHhhCCCC-cceEEEE
Q 019968 35 LIFLSVGGSVIPMRVME-----SDSIASVKLRIQSYNGFFV-KKQKLVF 77 (333)
Q Consensus 35 ~I~Vt~~G~~~~i~V~~-----sdTV~~LK~kI~~~~gip~-~~Q~Lif 77 (333)
.|.+++.|....+.+.. +.+...|+.+|++.+++++ ....|.|
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y 50 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTY 50 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEE
Confidence 45667888777777774 7899999999999999987 3444555
No 205
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=48.18 E-value=50 Score=28.86 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=32.8
Q ss_pred cEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCC
Q 019968 33 SILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFF 69 (333)
Q Consensus 33 ~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip 69 (333)
.+.+.|. ++|....+.++++.|+.++-..++.+.|++
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~ 40 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIR 40 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 4667774 688999999999999999999999999995
No 206
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=48.00 E-value=98 Score=22.40 Aligned_cols=59 Identities=19% Similarity=0.371 Sum_probs=42.0
Q ss_pred EEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 38 Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
++..|+.+ ++..+.||.++-.. .+++...--+..+|..+. .....++-+++|+.|.++.
T Consensus 3 i~vNG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~--r~~~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 3 IQLNGEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVP--RSQHASTALREGDVVEIVH 61 (66)
T ss_pred EEECCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeC--HHHcCcccCCCCCEEEEEE
Confidence 45566654 55677888876643 578877777888988885 2356777789999987764
No 207
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=45.42 E-value=76 Score=24.81 Aligned_cols=39 Identities=21% Similarity=0.107 Sum_probs=31.5
Q ss_pred eeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCC-CceEEEE
Q 019968 116 TVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDL-KNQELIC 156 (333)
Q Consensus 116 t~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~-~~QrLif 156 (333)
+.+|..+.+.+.++.+..+|+++|+++.++. . ..-.|-|
T Consensus 6 ~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~--~~~~f~LkY 45 (82)
T cd06407 6 TYGEEKIRFRLPPSWGFTELKQEIAKRFKLD--DMSAFDLKY 45 (82)
T ss_pred EeCCeEEEEEcCCCCCHHHHHHHHHHHhCCC--CCCeeEEEE
Confidence 3467788999999999999999999998875 3 4556655
No 208
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=45.39 E-value=11 Score=37.22 Aligned_cols=57 Identities=33% Similarity=0.322 Sum_probs=47.5
Q ss_pred CcEEEEE--EeCCeEEEEEec-CCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccc
Q 019968 32 DSILIFL--SVGGSVIPMRVM-ESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRV 89 (333)
Q Consensus 32 ~~M~I~V--t~~G~~~~i~V~-~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL 89 (333)
.++++.. ..+|....+.+. .+..+..+|.++....++++..|++.+.|..|. |+.++
T Consensus 280 ~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~-d~~~~ 339 (341)
T KOG0007|consen 280 VSIQVSRPVPADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLK-DNRSL 339 (341)
T ss_pred cceecccccCCCCceeeeccccccccccccccccccccccchhheeeccCCcccC-ccccc
Confidence 3444444 478888888888 888999999999999999999999999999998 66544
No 209
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=44.50 E-value=99 Score=33.90 Aligned_cols=85 Identities=12% Similarity=0.124 Sum_probs=54.8
Q ss_pred EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE----CCeec--CCCCcccccCCCCCCEEEEEeecCCccccccCC
Q 019968 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC----DGEEL--EDQRLITDICKRNEAVIHLLVRKSAKVRAKPVQ 194 (333)
Q Consensus 121 ~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif----~Gk~L--eD~~tL~dy~I~~gsvIhLv~r~~~~v~t~~~g 194 (333)
.+.+.|+...+++.+|+.|++..+++ .+.-+++. +|..+ .++.+|+.. .++.+|.+-+.++-+ .
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~--~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI~LG~~Lk------~ 947 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVD--KDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITIKLGAPLK------S 947 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcC--hhHeEEEEEecCCcchhhhccchhhhhh--cccceEEEEecCcCC------C
Confidence 46789999999999999999999998 77777763 45555 456677653 366676654433211 1
Q ss_pred ceEEEEEeeccccccCCCCCC
Q 019968 195 KDFEVSIEATELNEKGADVVG 215 (333)
Q Consensus 195 k~~~l~v~~~d~~~~~~~gi~ 215 (333)
.++...|.--+...|+.+..+
T Consensus 948 dE~~~KI~~L~~l~NE~e~~k 968 (1203)
T KOG4598|consen 948 DEKMMKIILLDILENERENWK 968 (1203)
T ss_pred CceeeEEEeehhhhccccCCc
Confidence 244444544445555444443
No 210
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=44.40 E-value=55 Score=36.29 Aligned_cols=65 Identities=15% Similarity=0.329 Sum_probs=49.5
Q ss_pred CCcEEEEEEec-CCchHHHHHHHHHhcCCCCCCCceEEEE-CCeecCCCCcccccCC--CCCCEEEEEeec
Q 019968 118 CGKVFEFHVER-GRNVGYVKQQIAKKGREFVDLKNQELIC-DGEELEDQRLITDICK--RNEAVIHLLVRK 184 (333)
Q Consensus 118 ~Gk~~~l~V~~-sdTV~~LK~~I~~~~Gip~~~~~QrLif-~Gk~LeD~~tL~dy~I--~~gsvIhLv~r~ 184 (333)
.|...+++.+. ..|+++||..|+.+.|+. ...|.++- +|..+.-++.+..|.- ++-+.|.+.-..
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~a--Iq~~tfl~egGecmaadkrl~e~StaGTdTnPiffFnke 71 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHA--IQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFFNKE 71 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchh--hceeeeeecCCcCcccccchhhhccccCCCCceEEeehh
Confidence 47777887764 678999999999999988 88887775 6666777888888872 455667775443
No 211
>PRK07440 hypothetical protein; Provisional
Probab=44.03 E-value=1.4e+02 Score=22.47 Aligned_cols=61 Identities=20% Similarity=0.242 Sum_probs=43.2
Q ss_pred EEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968 36 IFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 36 I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
+.|+..|+. +++..+.||.+|-. ..++++..--+.++|..+. ...+.++-+++|+.|.++-
T Consensus 5 m~i~vNG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~--r~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 5 ITLQVNGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILH--RQFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred eEEEECCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeC--HHHcCceecCCCCEEEEEE
Confidence 344456665 45567788887664 4567776667778999886 3467788899999987764
No 212
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=43.13 E-value=1.7e+02 Score=23.39 Aligned_cols=73 Identities=21% Similarity=0.273 Sum_probs=46.4
Q ss_pred CCcEEEEEEe--CCeEEEEEecCCCCHHHHHHHHHHh--hCCCCc----ceEEEECCee--cccCCccccccc-----cc
Q 019968 31 NDSILIFLSV--GGSVIPMRVMESDSIASVKLRIQSY--NGFFVK----KQKLVFEGRE--LARSNSRVRDYG-----LA 95 (333)
Q Consensus 31 ~~~M~I~Vt~--~G~~~~i~V~~sdTV~~LK~kI~~~--~gip~~----~Q~Lif~G~~--L~~D~~tL~dyg-----I~ 95 (333)
...+.|.|.. .+..+++.++.+.|+.++-.++-.+ .+.... ...|--.|+. |. .+..|.+|. ++
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~-g~~~L~~y~yIr~cl~ 92 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLL-GDHPLSQYEYIRQCLK 92 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE--SSS-GGGBHHHHHHHH
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEee-CCeeeeccHHHHHHHh
Confidence 4567777753 4688999999999999998888776 222221 4566677764 76 778888886 24
Q ss_pred cccceeeee
Q 019968 96 DGNVLHLVL 104 (333)
Q Consensus 96 ~gstV~Lv~ 104 (333)
.+..++|.+
T Consensus 93 ~~~~~~L~L 101 (106)
T PF00794_consen 93 RGKDPHLVL 101 (106)
T ss_dssp CT--EEEEE
T ss_pred cCCCcEEEE
Confidence 555555554
No 213
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=41.57 E-value=82 Score=23.97 Aligned_cols=64 Identities=22% Similarity=0.359 Sum_probs=46.8
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHHhhC---CCCcceEEE-ECCeecccCCccccccccccccceeeeee
Q 019968 41 GGSVIPMRVMESDSIASVKLRIQSYNG---FFVKKQKLV-FEGRELARSNSRVRDYGLADGNVLHLVLR 105 (333)
Q Consensus 41 ~G~~~~i~V~~sdTV~~LK~kI~~~~g---ip~~~Q~Li-f~G~~L~~D~~tL~dygI~~gstV~Lv~r 105 (333)
.|.-..++.+++.....+..+--..+| -|++.--|. -+|..|+ -++.+.|||+.+|.++.|.++
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD-~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLD-VNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEee-ccchhhhccccccceEEEEee
Confidence 566777888888888877777666554 344433332 2477786 889999999999999888765
No 214
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=40.95 E-value=17 Score=29.72 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=24.9
Q ss_pred EEEeeceeccccccccccccce----eee--cccCCCCcHH
Q 019968 220 ETLFMGYQIRERKLLQNDLLLE----PLI--VESNFKLPLM 254 (333)
Q Consensus 220 ~Lif~Gk~L~d~~~l~~d~~i~----~l~--~~~~~~~~~~ 254 (333)
.|-|+||+|..+.+|. ||+=. .++ +.+++..||.
T Consensus 3 ~LW~aGK~l~~~k~l~-dy~GkNEKtKiivKl~~~g~g~P~ 42 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLS-DYIGKNEKTKIIVKLQKRGQGPPP 42 (98)
T ss_pred eEEeccccccCCCcHH-HhcCCCcceeEEEEeccCCCCCCC
Confidence 5889999999999999 99821 344 3566666553
No 215
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=40.56 E-value=1.2e+02 Score=23.00 Aligned_cols=35 Identities=14% Similarity=-0.036 Sum_probs=30.8
Q ss_pred EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE
Q 019968 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI 155 (333)
Q Consensus 121 ~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi 155 (333)
..++.|.+++|+.+|-..+.++.++..++..-.|+
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 77899999999999999999999986567777884
No 216
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=40.22 E-value=30 Score=31.72 Aligned_cols=39 Identities=23% Similarity=0.173 Sum_probs=27.6
Q ss_pred cEEEEEE--------eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCc
Q 019968 33 SILIFLS--------VGGSVIPMRVMESDSIASVKLRIQSYNGFFVK 71 (333)
Q Consensus 33 ~M~I~Vt--------~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~ 71 (333)
.+.|.|. ..|--|.+.|.+++|..++|.+|++++|++-.
T Consensus 115 ~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k 161 (213)
T PF14533_consen 115 EKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDK 161 (213)
T ss_dssp EEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred ceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence 4667772 24677889999999999999999999999854
No 217
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=40.03 E-value=1.5e+02 Score=22.40 Aligned_cols=61 Identities=16% Similarity=0.290 Sum_probs=42.8
Q ss_pred EEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968 36 IFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 36 I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
+++.+.|+. +++..+.|+++|=.+ .+++...--+..+|..+. .....++-+++|+.|.++-
T Consensus 3 m~i~~ng~~--~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVp--r~~~~~~~l~~gD~ievv~ 63 (68)
T COG2104 3 MTIQLNGKE--VEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVP--RSQWADTILKEGDRIEVVR 63 (68)
T ss_pred EEEEECCEE--EEcCCCCcHHHHHHH----hCCCCceEEEEECCEEcc--chhhhhccccCCCEEEEEE
Confidence 444455555 455566889877654 678877777789999885 3467788888988887653
No 218
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.35 E-value=41 Score=33.42 Aligned_cols=55 Identities=11% Similarity=-0.040 Sum_probs=43.8
Q ss_pred EEEecCCchHHHHHHHHHhcCCCCCCCceEEEE---CCeec-----CCCCcccccCCCCCCEEEE
Q 019968 124 FHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DGEEL-----EDQRLITDICKRNEAVIHL 180 (333)
Q Consensus 124 l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif---~Gk~L-----eD~~tL~dy~I~~gsvIhL 180 (333)
.-|.-..||-++|.++..+-|+. +..++|+| +||.- +-+..|..|+|++|+.+-+
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk--~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lv 414 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVK--FTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLV 414 (418)
T ss_pred eEEEeehHHHHHHHHhccccccc--cceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeee
Confidence 44556779999999999999999 99999997 56543 3356788899999987654
No 219
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=39.07 E-value=1.4e+02 Score=22.54 Aligned_cols=57 Identities=7% Similarity=0.035 Sum_probs=36.9
Q ss_pred cEEEEEEecCCchHHHHHHHHHhcC-CCCCC-CceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968 120 KVFEFHVERGRNVGYVKQQIAKKGR-EFVDL-KNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (333)
Q Consensus 120 k~~~l~V~~sdTV~~LK~~I~~~~G-ip~~~-~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~ 182 (333)
....+++....|+++|+..+..... .. .. ..-.+..||+... .++-+++|+.|.++-
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~-~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~P 77 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLE-EVRSCCVLALNEEYTT-----ESAALKDGDELAIIP 77 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHH-HHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeC
Confidence 4567778788899999999977652 11 00 1113456777654 345677888888753
No 220
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=37.20 E-value=1.9e+02 Score=23.62 Aligned_cols=73 Identities=18% Similarity=0.141 Sum_probs=46.1
Q ss_pred eeEeeeC-CcEEEEEEecCCchHHHHHHHHHh----cCCCCCCC-ceEEEECCee--cCCCCccccc-----CCCCCCEE
Q 019968 112 ITVTTVC-GKVFEFHVERGRNVGYVKQQIAKK----GREFVDLK-NQELICDGEE--LEDQRLITDI-----CKRNEAVI 178 (333)
Q Consensus 112 I~Vkt~~-Gk~~~l~V~~sdTV~~LK~~I~~~----~Gip~~~~-~QrLif~Gk~--LeD~~tL~dy-----~I~~gsvI 178 (333)
|.|...+ ...+++.+++++|+.+|.+.+-.+ .+...+++ +-.|--.|+. |..+..|.+| ++..|..+
T Consensus 20 v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~ 99 (108)
T smart00144 20 IVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREP 99 (108)
T ss_pred EEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCc
Confidence 3443333 356899999999999998877665 22221133 4555556653 4556666665 46778888
Q ss_pred EEEeec
Q 019968 179 HLLVRK 184 (333)
Q Consensus 179 hLv~r~ 184 (333)
||++..
T Consensus 100 ~L~L~~ 105 (108)
T smart00144 100 HLVLMT 105 (108)
T ss_pred eEEEEe
Confidence 887653
No 221
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=36.10 E-value=96 Score=24.02 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=36.1
Q ss_pred eeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCe
Q 019968 115 TTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE 159 (333)
Q Consensus 115 kt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk 159 (333)
..++|....+.+.+..||.++-.+..++.|+. +..--+++-|.
T Consensus 5 ~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~--~~~~~vf~~g~ 47 (73)
T cd01817 5 ILPDGSTTVVPTRPGESIRDLLSGLCEKRGIN--YAAVDLFLVGG 47 (73)
T ss_pred ECCCCCeEEEEecCCCCHHHHHHHHHHHcCCC--hhHEEEEEecC
Confidence 45788889999999999999999999999998 77666665453
No 222
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=35.24 E-value=1.1e+02 Score=22.50 Aligned_cols=63 Identities=19% Similarity=0.184 Sum_probs=45.5
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEee
Q 019968 118 CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (333)
Q Consensus 118 ~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r 183 (333)
.| ...+.+....||.+|.+.+.....--.....-.+..||+...+ .-.++-+++|+.|.++-.
T Consensus 11 ~g-~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~pp 73 (77)
T PF02597_consen 11 AG-EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPP 73 (77)
T ss_dssp HT-EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEES
T ss_pred hC-CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECC
Confidence 35 6678888899999999999887631100255577789998877 355667788999988643
No 223
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=34.90 E-value=13 Score=36.36 Aligned_cols=42 Identities=14% Similarity=0.271 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHH----------hcCCCCCCCceE-----EEECCeecCCCCcccccCC
Q 019968 129 GRNVGYVKQQIAK----------KGREFVDLKNQE-----LICDGEELEDQRLITDICK 172 (333)
Q Consensus 129 sdTV~~LK~~I~~----------~~Gip~~~~~Qr-----Lif~Gk~LeD~~tL~dy~I 172 (333)
+.||.++|..++. ..++| .+..+ |.|+.+.+-|++||.|..-
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp--~dKik~~~~~lL~~kkPv~~~ktl~e~l~ 159 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVP--LDKIKNFRCRLLYKKKPVGDSKTLAEVLA 159 (309)
T ss_dssp -----------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCC--HHHhhhhhhhheecCccCCCcCcHHHHHh
Confidence 6889999999999 88999 88888 9999999999999988653
No 224
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=33.89 E-value=86 Score=26.65 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=38.1
Q ss_pred Eec-CCchHHHHHHHHHh----cCCCC----CCCceEEEE----------------C-Ceec---CCCCcccccCCCCCC
Q 019968 126 VER-GRNVGYVKQQIAKK----GREFV----DLKNQELIC----------------D-GEEL---EDQRLITDICKRNEA 176 (333)
Q Consensus 126 V~~-sdTV~~LK~~I~~~----~Gip~----~~~~QrLif----------------~-Gk~L---eD~~tL~dy~I~~gs 176 (333)
|+. +.||.+|++.+.+. .|++| .-+..++.+ + +..| +++.+|.+|||.+..
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 676 88999998777665 35552 012223322 1 1456 678899999999999
Q ss_pred EEEEEee
Q 019968 177 VIHLLVR 183 (333)
Q Consensus 177 vIhLv~r 183 (333)
.|-+..+
T Consensus 102 EiSfF~~ 108 (122)
T PF10209_consen 102 EISFFNM 108 (122)
T ss_pred eeeeeCH
Confidence 8887544
No 225
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=33.80 E-value=1.9e+02 Score=21.15 Aligned_cols=60 Identities=7% Similarity=0.069 Sum_probs=40.2
Q ss_pred EEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeee
Q 019968 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (333)
Q Consensus 38 Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~r 105 (333)
++..|+.+.+ ..+.||.+|-.. .+.....-.+..+|..+. .....++-+++|+.|.++.-
T Consensus 3 i~vNg~~~~~--~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~--r~~w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 3 ILFNDQPMQC--AAGQTVHELLEQ----LNQLQPGAALAINQQIIP--REQWAQHIVQDGDQILLFQV 62 (66)
T ss_pred EEECCeEEEc--CCCCCHHHHHHH----cCCCCCcEEEEECCEEeC--hHHcCccccCCCCEEEEEEE
Confidence 3456666555 566789888765 345544456678888886 23466777999999887653
No 226
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=33.38 E-value=19 Score=35.56 Aligned_cols=50 Identities=28% Similarity=0.387 Sum_probs=43.1
Q ss_pred eeCCcEEEEEEe-cCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcc
Q 019968 116 TVCGKVFEFHVE-RGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLI 167 (333)
Q Consensus 116 t~~Gk~~~l~V~-~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL 167 (333)
..+|....+.+. .+..+..+|.++....+++ +..|++.+.|.-|.|++.+
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~--~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIP--ANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccc--hhheeeccCCcccCccccc
Confidence 567777777776 7888999999999999999 9999999999999887544
No 227
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=32.75 E-value=1.4e+02 Score=22.47 Aligned_cols=40 Identities=13% Similarity=0.073 Sum_probs=32.0
Q ss_pred eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECC
Q 019968 40 VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG 79 (333)
Q Consensus 40 ~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G 79 (333)
.+|....+.+.|+.||.++=.++.++.|+.+..-.++..|
T Consensus 8 P~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 8 PNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp TTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred CCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 4678888999999999999999999999999877776544
No 228
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=31.94 E-value=1.5e+02 Score=21.99 Aligned_cols=38 Identities=21% Similarity=0.121 Sum_probs=29.6
Q ss_pred CCcEEEEEEe-cCCchHHHHHHHHHhcCCCCCCCceEEEEC
Q 019968 118 CGKVFEFHVE-RGRNVGYVKQQIAKKGREFVDLKNQELICD 157 (333)
Q Consensus 118 ~Gk~~~l~V~-~sdTV~~LK~~I~~~~Gip~~~~~QrLif~ 157 (333)
+|..+.+.+. .+.|..+|+++|.++.+.+ ...-.+-|.
T Consensus 8 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~--~~~~~l~y~ 46 (81)
T cd05992 8 GGEIRRFVVVSRSISFEDLRSKIAEKFGLD--AVSFKLKYP 46 (81)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHHHhCCC--CCcEEEEee
Confidence 3567788888 8999999999999999976 444455453
No 229
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=31.92 E-value=1.9e+02 Score=20.68 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=38.5
Q ss_pred EEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 38 Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
|+..|+.+. +.++.|+.++-..+. ++ ..-.+..+|.... .....+.-+++|+.|.++...
T Consensus 3 i~vNg~~~~--~~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~--~~~~~~~~L~~gD~vei~~~v 62 (65)
T PRK06944 3 IQLNQQTLS--LPDGATVADALAAYG----AR-PPFAVAVNGDFVA--RTQHAARALAAGDRLDLVQPV 62 (65)
T ss_pred EEECCEEEE--CCCCCcHHHHHHhhC----CC-CCeEEEECCEEcC--chhcccccCCCCCEEEEEeec
Confidence 445666554 457789998887653 33 2345567888775 223556668899999876543
No 230
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=31.58 E-value=2.3e+02 Score=21.35 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=38.6
Q ss_pred EEEEEEecC-CchHHHHHHHHHhcC-CCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968 121 VFEFHVERG-RNVGYVKQQIAKKGR-EFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (333)
Q Consensus 121 ~~~l~V~~s-dTV~~LK~~I~~~~G-ip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~ 182 (333)
...+++... .||.+|+..+.+... .........+..+|+...+ +.-+++|+.|.++-
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~P 75 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIP 75 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeC
Confidence 356778766 899999999988864 1100123355568887764 45678888888754
No 231
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=31.46 E-value=2.2e+02 Score=21.09 Aligned_cols=59 Identities=20% Similarity=0.196 Sum_probs=40.7
Q ss_pred EEeCCeEEEEEecCC-CCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968 38 LSVGGSVIPMRVMES-DSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 38 Vt~~G~~~~i~V~~s-dTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
++..|+.+.+ ..+ .||.+|-. ..++++..--+.++|..+. ...+.++-+++|+.|.++.
T Consensus 3 I~vNG~~~~~--~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~--r~~w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 3 LKINGNQIEV--PESVKTVAELLT----HLELDNKIVVVERNKDILQ--KDDHTDTSVFDGDQIEIVT 62 (67)
T ss_pred EEECCEEEEc--CCCcccHHHHHH----HcCCCCCeEEEEECCEEeC--HHHcCceecCCCCEEEEEE
Confidence 4556665544 444 56776654 4577777666778999986 3457778899999988764
No 232
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=31.23 E-value=1.4e+02 Score=24.16 Aligned_cols=37 Identities=24% Similarity=0.209 Sum_probs=31.8
Q ss_pred eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEE
Q 019968 40 VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF 77 (333)
Q Consensus 40 ~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif 77 (333)
.+|.+..+.|+.+.|..+|+.++.+..++... ..|.|
T Consensus 20 ~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 20 VGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred cCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 58899999999999999999999999998865 44443
No 233
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=31.15 E-value=1.5e+02 Score=23.16 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=40.4
Q ss_pred CeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEE-CCeecccCCccccccccccccceeeee
Q 019968 42 GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF-EGRELARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 42 G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif-~G~~L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
+..+.+.+.+..||.++-. ..|+|..+-.+++ +|+.-. -+|-+++|+.|.+..
T Consensus 22 ~~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~------~~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVD------FDYRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECC------CcccCCCCCEEEEEe
Confidence 4567788889999886654 4799988887764 787765 258889999987764
No 234
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=31.14 E-value=1.9e+02 Score=21.53 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=31.3
Q ss_pred CCcEEE-EEEecCCchHHHHHHHHHhcCCCCCCCceEEEEC
Q 019968 118 CGKVFE-FHVERGRNVGYVKQQIAKKGREFVDLKNQELICD 157 (333)
Q Consensus 118 ~Gk~~~-l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~ 157 (333)
.|..+. +.+.+..|..+|+.+|.++.+.+ ...-.|.|.
T Consensus 9 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~--~~~~~l~Y~ 47 (84)
T PF00564_consen 9 GGDIRRIISLPSDVSFDDLRSKIREKFGLL--DEDFQLKYK 47 (84)
T ss_dssp TTEEEEEEEECSTSHHHHHHHHHHHHHTTS--TSSEEEEEE
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHHHhCCC--CccEEEEee
Confidence 445555 88999999999999999999987 677788774
No 235
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=30.99 E-value=2.7e+02 Score=24.56 Aligned_cols=111 Identities=19% Similarity=0.305 Sum_probs=68.3
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeee----c-ccccceeEeeeCC
Q 019968 45 IPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR----L-SDLQAITVTTVCG 119 (333)
Q Consensus 45 ~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~r----l-sd~m~I~Vkt~~G 119 (333)
|+-.+-.-+|...|=.+|....|+ .|.+..|..|- .---||...|.-+.-..| . ...+.+.|++ |
T Consensus 6 fP~R~L~peTtEklLN~l~~i~GI----~R~vi~Gp~LP----k~VpyGPa~G~pv~h~~Rk~I~V~g~~veL~V~v--G 75 (153)
T PF02505_consen 6 FPHRLLKPETTEKLLNELYSIEGI----RRVVIHGPRLP----KTVPYGPARGTPVNHPDRKVINVGGEEVELTVKV--G 75 (153)
T ss_pred echhcCCHHHHHHHHHHHhccCCE----EEEEEECCCCC----CCCCCCCCCCCcCCCCcceEEEECCEEEEEEEEE--e
Confidence 344455667888888888887665 47888899887 334677766654322211 1 1235555554 3
Q ss_pred cEEEEEEec-CCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCC
Q 019968 120 KVFEFHVER-GRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK 172 (333)
Q Consensus 120 k~~~l~V~~-sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I 172 (333)
.+-++++. .+.+..+++--.+..-++ .+ +..|+-+....|++||-.
T Consensus 76 -ri~lele~~~~~ie~I~~iCee~lpf~--y~----i~~G~f~r~~~TvtDY~K 122 (153)
T PF02505_consen 76 -RIILELEDEEDVIEKIREICEEVLPFG--YD----IKEGKFIRTKPTVTDYAK 122 (153)
T ss_pred -EEEEEecCcHHHHHHHHHHHHHhCCCc--eE----eeeeEEeccCCchhhhhh
Confidence 46677776 556666665433333222 22 346888999999999853
No 236
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=30.73 E-value=1.6e+02 Score=30.31 Aligned_cols=72 Identities=11% Similarity=0.125 Sum_probs=50.5
Q ss_pred ceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCC----CCCCCceEEE-ECCeecCCCCcccccCCCCCCEEEEEee
Q 019968 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGRE----FVDLKNQELI-CDGEELEDQRLITDICKRNEAVIHLLVR 183 (333)
Q Consensus 111 ~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gi----p~~~~~QrLi-f~Gk~LeD~~tL~dy~I~~gsvIhLv~r 183 (333)
+++|.+.+ +...+-+..+..|+++--.|-+..+- +..+..-.|. .+|..|+.+++|.+.++.+|++++|.-+
T Consensus 4 RVtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~ 80 (452)
T TIGR02958 4 RVTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPA 80 (452)
T ss_pred EEEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeC
Confidence 45665433 34556667788899998888877653 2112223443 3888999999999999999999999653
No 237
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=30.65 E-value=1.3e+02 Score=23.31 Aligned_cols=41 Identities=17% Similarity=0.158 Sum_probs=35.8
Q ss_pred eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCe
Q 019968 40 VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR 80 (333)
Q Consensus 40 ~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~ 80 (333)
.+|..-.+.+.|+.||.++=.++.++.|+...--.++..|.
T Consensus 7 Pdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 7 PDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred CCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 46778889999999999999999999999988888877664
No 238
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=29.76 E-value=1.2e+02 Score=24.41 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=43.5
Q ss_pred cceeEeee-CCcEEEEEEecCCchHHHHHHHHHhc--C-CCCCCC-ceEEEECCee--cCCCCccccc-----CCCCCCE
Q 019968 110 QAITVTTV-CGKVFEFHVERGRNVGYVKQQIAKKG--R-EFVDLK-NQELICDGEE--LEDQRLITDI-----CKRNEAV 177 (333)
Q Consensus 110 m~I~Vkt~-~Gk~~~l~V~~sdTV~~LK~~I~~~~--G-ip~~~~-~QrLif~Gk~--LeD~~tL~dy-----~I~~gsv 177 (333)
+.|.|... .+..+++.++.+.|+.+|-+++-.+. + .+.+.. +-.|--.|++ |..+.+|.+| ++..+..
T Consensus 17 i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~ 96 (106)
T PF00794_consen 17 IKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKD 96 (106)
T ss_dssp EEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--
T ss_pred EEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCC
Confidence 44555554 45678999999999999988877761 2 121122 4556555543 5667777777 3566677
Q ss_pred EEEEee
Q 019968 178 IHLLVR 183 (333)
Q Consensus 178 IhLv~r 183 (333)
++|++.
T Consensus 97 ~~L~Lv 102 (106)
T PF00794_consen 97 PHLVLV 102 (106)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 777653
No 239
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=28.87 E-value=94 Score=28.63 Aligned_cols=48 Identities=17% Similarity=0.253 Sum_probs=33.9
Q ss_pred ccccc-cccceeeeeecccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcC
Q 019968 91 DYGLA-DGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGR 144 (333)
Q Consensus 91 dygI~-~gstV~Lv~rlsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~G 144 (333)
++|.+ .|.|||++--.-|+=.|..+ -.+.|.+.||.+.|.+||++.+-
T Consensus 126 ~aG~k~sG~TVH~V~e~vD~GpII~Q------~~Vpv~~~Dt~etl~~RV~~~Eh 174 (200)
T COG0299 126 EAGVKVSGCTVHFVTEGVDTGPIIAQ------AAVPVLPGDTAETLEARVLEQEH 174 (200)
T ss_pred HcCCCccCcEEEEEccCCCCCCeEEE------EeeeecCCCCHHHHHHHHHHHHH
Confidence 45554 68888887654333334442 35788999999999999998753
No 240
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=28.68 E-value=1.5e+02 Score=23.13 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=32.6
Q ss_pred CchHHHHHHHHHhcCCCCCCCceEEEE--CCeecCCCCccccc--CCCCCCEEEEEeec
Q 019968 130 RNVGYVKQQIAKKGREFVDLKNQELIC--DGEELEDQRLITDI--CKRNEAVIHLLVRK 184 (333)
Q Consensus 130 dTV~~LK~~I~~~~Gip~~~~~QrLif--~Gk~LeD~~tL~dy--~I~~gsvIhLv~r~ 184 (333)
.|..+|+.+..++.+++ ...-+|+. +|.+.+|+ +| .+.+ .+.-+++.+
T Consensus 21 ~sL~eL~~K~~~~l~~~--~~~~~lvL~eDGT~VddE----eyF~tLp~-nT~lm~L~~ 72 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLP--EEPVRLVLEEDGTEVDDE----EYFQTLPD-NTVLMLLEK 72 (78)
T ss_dssp SSHHHHHHHHHHHHT-S--SSTCEEEETTTTCBESSC----HHHCCSSS-SEEEEEEES
T ss_pred CCHHHHHHHHHHHhCCC--CcCcEEEEeCCCcEEccH----HHHhhCCC-CCEEEEECC
Confidence 58999999999999998 67777776 67777654 34 2434 444444543
No 241
>PF13395 HNH_4: HNH endonuclease
Probab=28.55 E-value=22 Score=25.36 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=24.7
Q ss_pred EeeceeccccccccccccceeeecccCCCCcHHHHHHH
Q 019968 222 LFMGYQIRERKLLQNDLLLEPLIVESNFKLPLMIKRLI 259 (333)
Q Consensus 222 if~Gk~L~d~~~l~~d~~i~~l~~~~~~~~~~~~~~~~ 259 (333)
.|-|++|.....+...|.|+|++-+++++- ..++|+.
T Consensus 2 ~Y~g~~i~~~~l~~~~~~iDHiiP~s~~~~-~s~~Nlv 38 (54)
T PF13395_consen 2 PYCGKPISIENLFKNKYEIDHIIPRSRGGD-DSFWNLV 38 (54)
T ss_pred CCCCCCCChhhcccCCceeEEEecccccCC-CCcchhh
Confidence 367888877776655677999988877653 3344443
No 242
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=28.50 E-value=1.8e+02 Score=22.74 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=28.7
Q ss_pred EEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE--CCeecCCC
Q 019968 122 FEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC--DGEELEDQ 164 (333)
Q Consensus 122 ~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif--~Gk~LeD~ 164 (333)
...=|- -.|.++|+.+..++.+++ ...-+|++ +|.+++|+
T Consensus 14 ~k~GV~-A~sL~eL~~K~~~~l~l~--~~~~~lvL~eDGTeVddE 55 (78)
T cd01615 14 RKKGVA-ASSLEELLSKACEKLKLP--SAPVTLVLEEDGTEVDDE 55 (78)
T ss_pred eeEEEE-cCCHHHHHHHHHHHcCCC--CCCeEEEEeCCCcEEccH
Confidence 334443 347999999999999997 45555554 88888765
No 243
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=28.47 E-value=1.8e+02 Score=24.64 Aligned_cols=59 Identities=20% Similarity=0.295 Sum_probs=39.9
Q ss_pred CcEEEEE-Ee---CCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccc
Q 019968 32 DSILIFL-SV---GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRD 91 (333)
Q Consensus 32 ~~M~I~V-t~---~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~d 91 (333)
+.+-|.| +. +.+...+-|..+.||+++..-|.++.++++.+--|+.++..+. .+.++.+
T Consensus 26 drIPVIvEk~~~s~dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~-~s~~mg~ 88 (121)
T PTZ00380 26 GHVAVVVEAAEKAGSKVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPA-VTATVGD 88 (121)
T ss_pred CccEEEEeecCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCC-ccchHHH
Confidence 3456666 32 2344444799999999999999999999999844445554444 4445543
No 244
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=27.84 E-value=2.7e+02 Score=21.05 Aligned_cols=37 Identities=24% Similarity=0.158 Sum_probs=30.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE
Q 019968 119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI 155 (333)
Q Consensus 119 Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi 155 (333)
+...++.|..++|..+|-..+.++.++..++..-.|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 5667899999999999999999999977446666665
No 245
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=27.69 E-value=2.3e+02 Score=22.12 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=39.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE-CCeecCCCCcccccCCCCCCEEEEE
Q 019968 119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC-DGEELEDQRLITDICKRNEAVIHLL 181 (333)
Q Consensus 119 Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif-~Gk~LeD~~tL~dy~I~~gsvIhLv 181 (333)
+..+.+.+++..||.++- +..|+| ...-.+++ ||+...= +|-+++|+.|.+.
T Consensus 22 ~~~~~~~~~~~~tvkd~I----EsLGVP--~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVI----ESLGVP--HTEVGLILVNGRPVDF-----DYRLKDGDRVAVY 74 (81)
T ss_pred CCceEEecCCCCcHHHHH----HHcCCC--hHHeEEEEECCEECCC-----cccCCCCCEEEEE
Confidence 456788889999988864 457999 77776664 8887753 5778889988875
No 246
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=27.44 E-value=1.9e+02 Score=23.39 Aligned_cols=40 Identities=13% Similarity=0.021 Sum_probs=33.2
Q ss_pred EeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE
Q 019968 114 VTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC 156 (333)
Q Consensus 114 Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif 156 (333)
++-.+|.+..+.|+.+.|..+|+.++.+..++. .. ..|-|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~--~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAG--VV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCC--Cc-eEEEE
Confidence 355689999999999999999999999999887 44 55554
No 247
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=27.28 E-value=1.2e+02 Score=23.86 Aligned_cols=35 Identities=11% Similarity=0.205 Sum_probs=31.2
Q ss_pred EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEEC
Q 019968 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD 157 (333)
Q Consensus 121 ~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~ 157 (333)
++.+.+.+..+..+|..+|.++...+ ++.-.|.|.
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~--~~~~~LSY~ 42 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQ--AQRGQLSYR 42 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCC--hhhcEEEec
Confidence 56688889999999999999999999 888899883
No 248
>PF12392 DUF3656: Collagenase ; InterPro: IPR020988 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This domain is found in a number of proteins belonging to the MEROPS peptidase family U32. Peptidase family U32 contains endopeptidases, including collagenase, from bacteria.
Probab=27.07 E-value=77 Score=26.10 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=26.4
Q ss_pred cCCCceeeeeeeecc--c-CCchhHHHHHHHHHhhcc
Q 019968 268 RGLTPFDIGCIMCRK--T-LKDESVIEQIVREAQDAV 301 (333)
Q Consensus 268 ~g~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~ 301 (333)
-|.|||.++.|.|.- + .-.-|.+.++=|+|-+++
T Consensus 78 lG~T~F~~~~i~i~~~~~lFlP~s~LN~lRRea~e~L 114 (122)
T PF12392_consen 78 LGNTPFELENIEIDLDEGLFLPISELNELRREAVEKL 114 (122)
T ss_pred hCCCcEEEEEEEEEcCCCEEEEHHHHHHHHHHHHHHH
Confidence 499999999999982 2 234588899999887753
No 249
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=26.82 E-value=2e+02 Score=22.32 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=34.3
Q ss_pred EEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE--CCeecCCCCccccc--CCCCCCEEEE
Q 019968 122 FEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC--DGEELEDQRLITDI--CKRNEAVIHL 180 (333)
Q Consensus 122 ~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif--~Gk~LeD~~tL~dy--~I~~gsvIhL 180 (333)
...-|- -.|.++|+.+..++.+++ ...-+|++ +|.+++|+ +| .+.++..+.+
T Consensus 12 ~k~GV~-A~sL~eL~~K~~~~l~l~--~~~~~l~L~eDGT~VddE----eyF~tLp~nt~l~~ 67 (74)
T smart00266 12 VRKGVA-ASSLEELLSKVCDKLALP--DSPVTLVLEEDGTIVDDE----EYFQTLPDNTELMA 67 (74)
T ss_pred eeEEEE-cCCHHHHHHHHHHHhCCC--CCCcEEEEecCCcEEccH----HHHhcCCCCcEEEE
Confidence 333343 347999999999999998 55556654 88888765 44 2444444443
No 250
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=26.63 E-value=3.1e+02 Score=22.37 Aligned_cols=36 Identities=6% Similarity=0.016 Sum_probs=30.6
Q ss_pred EEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCC
Q 019968 35 LIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFV 70 (333)
Q Consensus 35 ~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~ 70 (333)
-|.| +.++...++.+..+.||+++-..+.+++.++.
T Consensus 4 ~IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~ 40 (97)
T cd01775 4 CIRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPS 40 (97)
T ss_pred EEEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCC
Confidence 4555 56777788999999999999999999988876
No 251
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=24.83 E-value=3.1e+02 Score=21.86 Aligned_cols=42 Identities=7% Similarity=-0.052 Sum_probs=32.3
Q ss_pred eEeee-CCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEEC
Q 019968 113 TVTTV-CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD 157 (333)
Q Consensus 113 ~Vkt~-~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~ 157 (333)
.||.. .|..+.+.|.++.+-.+|..+|.++.++. ..-.+-|.
T Consensus 4 kVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~---~~~~iKyk 46 (86)
T cd06408 4 RVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK---RRLKIKMK 46 (86)
T ss_pred EEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC---CceEEEEE
Confidence 34443 67889999999999999999999999974 34444443
No 252
>PRK08453 fliD flagellar capping protein; Validated
Probab=24.77 E-value=3.7e+02 Score=29.37 Aligned_cols=92 Identities=8% Similarity=0.040 Sum_probs=52.5
Q ss_pred EEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCc-----------ceEEEECCeecccCC-----cccccccccccc
Q 019968 35 LIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVK-----------KQKLVFEGRELARSN-----SRVRDYGLADGN 98 (333)
Q Consensus 35 ~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~-----------~Q~Lif~G~~L~~D~-----~tL~dygI~~gs 98 (333)
.+.+...|++++|+|..+.|+.+|+.+|-...+ +-- ..+|++.+...-.++ .+|....+..|.
T Consensus 130 ~~~~~~~G~~~sIdi~~gtTL~~L~~~INd~~n-~~V~Asiv~tG~~~~y~L~l~s~etGa~n~I~~~~~~~~~~~~~~~ 208 (673)
T PRK08453 130 TLKFYTQGKDYAIDIKAGMTLGDVAQSITDATN-GEVMGIVMKTGGNDPYQLMINSKNTGEDNRIYFGSTLQSTLTNKNA 208 (673)
T ss_pred eEEEEECCEEEEEEeCCCCcHHHHHHHhcCCCC-CCeEEEEEecCCCccEEEEEeccCcCCCceEEEeccccccccCCcc
Confidence 355567899999999999999999999994331 212 244444443322111 233333333333
Q ss_pred ceeeeeecccccceeEeeeCCcEEEEEEe
Q 019968 99 VLHLVLRLSDLQAITVTTVCGKVFEFHVE 127 (333)
Q Consensus 99 tV~Lv~rlsd~m~I~Vkt~~Gk~~~l~V~ 127 (333)
--.+-..-.+-..|+++..+|+..++.+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 237 (673)
T PRK08453 209 LSLVDGSGKGDLSLNLKDADGNMHTVPIM 237 (673)
T ss_pred cccccccccccceeeeeccCCcccccccc
Confidence 11122222344677888888876655543
No 253
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=24.35 E-value=2.1e+02 Score=22.46 Aligned_cols=46 Identities=9% Similarity=0.048 Sum_probs=31.9
Q ss_pred CchHHHHHHHHHhcCCCCCCCceEEE--ECCeecCCCCccccc--CCCCCCEEEEE
Q 019968 130 RNVGYVKQQIAKKGREFVDLKNQELI--CDGEELEDQRLITDI--CKRNEAVIHLL 181 (333)
Q Consensus 130 dTV~~LK~~I~~~~Gip~~~~~QrLi--f~Gk~LeD~~tL~dy--~I~~gsvIhLv 181 (333)
.|.++|+.+..++.+++ ...-+|+ -+|.+++|+ +| .+.+++++.++
T Consensus 21 ~sL~EL~~K~~~~l~~~--~~~~~lvL~eDGT~Vd~E----eyF~~LpdnT~lm~L 70 (78)
T cd06539 21 SSLQELISKTLDALVIT--SGLVTLVLEEDGTVVDTE----EFFQTLGDNTHFMVL 70 (78)
T ss_pred cCHHHHHHHHHHHhCCC--CCCcEEEEeCCCCEEccH----HHHhhCCCCCEEEEE
Confidence 47999999999999987 4444554 488888665 44 35555655553
No 254
>PRK01777 hypothetical protein; Validated
Probab=24.34 E-value=3.4e+02 Score=21.84 Aligned_cols=63 Identities=13% Similarity=0.132 Sum_probs=40.9
Q ss_pred cEEEEEE--eCC--eEEEEEecCCCCHHHHHHHHHHhhCCCCc--c-----eEEEECCeecccCCcccccccccccccee
Q 019968 33 SILIFLS--VGG--SVIPMRVMESDSIASVKLRIQSYNGFFVK--K-----QKLVFEGRELARSNSRVRDYGLADGNVLH 101 (333)
Q Consensus 33 ~M~I~Vt--~~G--~~~~i~V~~sdTV~~LK~kI~~~~gip~~--~-----Q~Lif~G~~L~~D~~tL~dygI~~gstV~ 101 (333)
.|+|.|- ... ....+++.++.||.++-.. .|++.. . -.+.-+|+.-. .++-+++|+.|.
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~----sgi~~~~pei~~~~~~vgI~Gk~v~------~d~~L~dGDRVe 72 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRA----SGLLELRTDIDLAKNKVGIYSRPAK------LTDVLRDGDRVE 72 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHH----cCCCccCcccccccceEEEeCeECC------CCCcCCCCCEEE
Confidence 5777772 333 4477889999999977654 466554 2 24545676654 256778899887
Q ss_pred eeee
Q 019968 102 LVLR 105 (333)
Q Consensus 102 Lv~r 105 (333)
+.-.
T Consensus 73 IyrP 76 (95)
T PRK01777 73 IYRP 76 (95)
T ss_pred EecC
Confidence 7543
No 255
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=24.31 E-value=1.9e+02 Score=22.78 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=37.5
Q ss_pred EEecCCCCHHHHHHHHHHhhCCCC-------cceEEEECCe-ecc-----cCCccccccccccccceeee
Q 019968 47 MRVMESDSIASVKLRIQSYNGFFV-------KKQKLVFEGR-ELA-----RSNSRVRDYGLADGNVLHLV 103 (333)
Q Consensus 47 i~V~~sdTV~~LK~kI~~~~gip~-------~~Q~Lif~G~-~L~-----~D~~tL~dygI~~gstV~Lv 103 (333)
|+++++.|+.+|-..+.+...+.. ....|++.+- .|+ +-+.+|.+. +.+|..|.+.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 578999999999999998744433 3344555543 121 123678888 8888887664
No 256
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=24.26 E-value=2.7e+02 Score=21.22 Aligned_cols=38 Identities=21% Similarity=0.090 Sum_probs=30.6
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE
Q 019968 118 CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI 155 (333)
Q Consensus 118 ~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi 155 (333)
++...++.|.+++|+.+|-..+.++.++..++..-.|+
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~ 51 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLV 51 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEE
Confidence 35678899999999999999999999987434555554
No 257
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=24.15 E-value=3.2e+02 Score=20.73 Aligned_cols=59 Identities=17% Similarity=0.275 Sum_probs=37.6
Q ss_pred EEEEEEecCCchHHHHHHHHHhcCC-----CC---CC-CceEEEECCeecCCCCcccccCCCCCCEEEEEee
Q 019968 121 VFEFHVERGRNVGYVKQQIAKKGRE-----FV---DL-KNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (333)
Q Consensus 121 ~~~l~V~~sdTV~~LK~~I~~~~Gi-----p~---~~-~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r 183 (333)
...+++. ..||.+|.+.+.+...- .. .. ....+..+|+....+.. .-+++|+.|.++-.
T Consensus 17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~Pp 84 (88)
T TIGR01687 17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPP 84 (88)
T ss_pred eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCC
Confidence 4567775 78999999999887541 00 01 12345568887654321 56788999888643
No 258
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=23.78 E-value=1.5e+02 Score=23.65 Aligned_cols=58 Identities=19% Similarity=0.303 Sum_probs=35.4
Q ss_pred EEecCCCCHHHHHHHHHHhhCCCCcceEEEECCe-------ecccCCcc---c--cccccccccceeeeeecc
Q 019968 47 MRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR-------ELARSNSR---V--RDYGLADGNVLHLVLRLS 107 (333)
Q Consensus 47 i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~-------~L~~D~~t---L--~dygI~~gstV~Lv~rls 107 (333)
+++....||.++-..+.... +..+..|+..+. .|- ++.. + .++-+++|+.|.+.....
T Consensus 23 ~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~Vlv-N~~di~~l~g~~t~L~dgD~v~i~P~v~ 92 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLI-NDTDWELLGEEDYILEDGDHVVFISTLH 92 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEE-CCccccccCCcccCCCCcCEEEEECCCC
Confidence 34446789999999998775 444444544322 133 2222 2 457789999888776443
No 259
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.75 E-value=46 Score=34.37 Aligned_cols=75 Identities=13% Similarity=0.076 Sum_probs=58.3
Q ss_pred CCCcEEEEEE--eCCeE-EEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeee
Q 019968 30 SNDSILIFLS--VGGSV-IPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (333)
Q Consensus 30 ~~~~M~I~Vt--~~G~~-~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~r 105 (333)
+=.+..|+.- ..|.+ ..++....-|-.++...|.+++|++-+.-+.+.+|+.|+ ...||.+-|++.+..+.+.+.
T Consensus 34 Glat~~Vrlv~~~k~~~m~l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils-~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 34 GLATESVRLVFAGKGDRMNLKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILS-CRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred CccceeeEeccccccchhhhhhcccccccHHHHHHHHHHcCCchhhhheeeccceee-cccchhhhhhhhhhHHHHHhc
Confidence 3446666663 33322 234555667788999999999999999888899999998 999999999999988777665
No 260
>PRK13832 plasmid partitioning protein; Provisional
Probab=23.60 E-value=52 Score=34.46 Aligned_cols=42 Identities=29% Similarity=0.654 Sum_probs=36.8
Q ss_pred eeeeeecccCCchhHHHHHHHHH--hhccCCCCchhhHHHHHHH
Q 019968 275 IGCIMCRKTLKDESVIEQIVREA--QDAVLPGTSEDGFLESVAS 316 (333)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 316 (333)
|+-..||++++.+-++-+|.-.| +|+.||-+.--.||-|+|+
T Consensus 427 ~~~~~c~~~~~~sg~~~~~~g~~~~ad~~~~~m~~e~fl~~~s~ 470 (520)
T PRK13832 427 IDVLSCRRNMSNSGVVARIAGDAIGADAFLPNMGTEDFLSCLSR 470 (520)
T ss_pred HHhheeccCCCccchHHHHhhccccccccCcCcccHHHHHHhhH
Confidence 44568999999999999998877 6789999998999999997
No 261
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.27 E-value=4e+02 Score=25.87 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=50.6
Q ss_pred CcEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE--ECCeecccC--Cccccccccccccceee
Q 019968 32 DSILIFLSV-GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELARS--NSRVRDYGLADGNVLHL 102 (333)
Q Consensus 32 ~~M~I~Vt~-~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li--f~G~~L~~D--~~tL~dygI~~gstV~L 102 (333)
.+-.|-|++ +|.++...+++..|...++.-|.-..+...+...|. |--..+.+| ..+|...++.+-+++.+
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 355666775 899999999999999999999999888765444432 222333323 25788888877777654
No 262
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=23.22 E-value=2.7e+02 Score=22.04 Aligned_cols=43 Identities=7% Similarity=0.026 Sum_probs=34.9
Q ss_pred EEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEE
Q 019968 35 LIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF 77 (333)
Q Consensus 35 ~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif 77 (333)
+..++..|.+..+.+...-|-+.|+.+|+...++|...--+.|
T Consensus 2 ~fKv~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtY 44 (82)
T cd06397 2 QFKSSFLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTY 44 (82)
T ss_pred eEEEEeCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEE
Confidence 3456778877777777788899999999999999987666655
No 263
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=22.74 E-value=1.3e+02 Score=22.82 Aligned_cols=42 Identities=29% Similarity=0.367 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccc-cccccceee
Q 019968 53 DSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYG-LADGNVLHL 102 (333)
Q Consensus 53 dTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dyg-I~~gstV~L 102 (333)
+|+.+|.....+++|++ ....+.-+|.+.. |-. |.+|+.+++
T Consensus 26 ~SleeLl~ia~~kfg~~-~~~v~~~dgaeId-------DI~~IRDgD~L~~ 68 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFS-ATKVLNEDGAEID-------DIDVIRDGDHLYL 68 (69)
T ss_pred ccHHHHHHHHHHHhCCC-ceEEEcCCCCEEe-------EEEEEEcCCEEEE
Confidence 79999999999999997 3333334455544 444 567777655
No 264
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=22.64 E-value=4.2e+02 Score=23.33 Aligned_cols=111 Identities=18% Similarity=0.230 Sum_probs=66.2
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec-----ccccceeEeeeCC
Q 019968 45 IPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL-----SDLQAITVTTVCG 119 (333)
Q Consensus 45 ~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl-----sd~m~I~Vkt~~G 119 (333)
|+-.+-.-+|...|=.+++...|+ .|.+..|..|- .---||...|.-+.-..|. ...+.+.|++ |
T Consensus 5 fP~R~L~~eTtEklLN~l~~i~gI----~R~vIhGp~LP----k~VpyGPa~G~pv~h~~Rk~I~V~g~~veL~V~V--G 74 (150)
T TIGR03260 5 FPHRLLKAETTEKLLNKLYDLDGI----LRVVIHGQRLP----KKVPYGPARGLPVNHPDRKTIRVKGEDVELRVQV--G 74 (150)
T ss_pred echhhCCHHHHHHHHHHhhccCCE----EEEEEECCCCC----CCCCCCcccCCCCCCCcceEEEECCEEEEEEEEE--e
Confidence 344455667888888888777665 47788898887 2335676666443322111 1234455544 3
Q ss_pred cEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCC
Q 019968 120 KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK 172 (333)
Q Consensus 120 k~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I 172 (333)
.+-++++..+.+..+++--.+..-++ -=+..|+-+....|+.||-.
T Consensus 75 -rI~le~~~~~~i~~I~eiC~e~~pF~------y~i~~g~f~r~~~TvtDY~K 120 (150)
T TIGR03260 75 -RIILELEDEDIVEEIEEICKEMLPFG------YEVRVGKFLRTKPTVTDYIK 120 (150)
T ss_pred -EEEEEecCHHHHHHHHHHHHhhCCCc------eEeeeeeEeecCCchhhhhh
Confidence 35566666666666665433333333 12356778899999999854
No 265
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=22.62 E-value=2.5e+02 Score=21.98 Aligned_cols=50 Identities=12% Similarity=-0.063 Sum_probs=38.3
Q ss_pred eEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCC
Q 019968 113 TVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ 164 (333)
Q Consensus 113 ~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~ 164 (333)
.|-..+|+..++-|.+++|+.++-+-...+.+.. |....|-..-..++|.
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ld--p~eh~Lrlk~~~~e~~ 52 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLD--PMEHYLRLKFLRMENH 52 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCC--hhHheeEEEEEecCCc
Confidence 4567789999999999999999999999999987 7766554433334443
No 266
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=22.41 E-value=1.3e+02 Score=27.73 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=28.8
Q ss_pred cccceeeeeecccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcC
Q 019968 96 DGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGR 144 (333)
Q Consensus 96 ~gstV~Lv~rlsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~G 144 (333)
.|+|+|.+.-.-|.=.|.+ ...+.|.++||++++-+||+..+-
T Consensus 140 ~GctvHfV~EevD~G~iI~------q~~v~V~~~Dt~esl~qrv~~aEH 182 (206)
T KOG3076|consen 140 SGCTVHFVIEEVDTGPIIA------QMAVPVIPGDTLESLEQRVHDAEH 182 (206)
T ss_pred ccceEEEehhhccCCCceE------EEeeeecCCCCHHHHHHHHHHHHH
Confidence 3566666554433323333 145789999999999999998764
No 267
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=22.11 E-value=1.6e+02 Score=26.04 Aligned_cols=32 Identities=9% Similarity=0.215 Sum_probs=27.4
Q ss_pred CCCcEEEEEEeCCeEEEEEecCCCCHHHHHHH
Q 019968 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLR 61 (333)
Q Consensus 30 ~~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~k 61 (333)
+++.+.|.++++|+.++++++|..+..++=+.
T Consensus 3 ~~~~~~i~~~vNG~~~~~~~~~~~~Ll~~LR~ 34 (159)
T PRK09908 3 HSETITIECTINGMPFQLHAAPGTPLSELLRE 34 (159)
T ss_pred CCCceeEEEEECCEEEEEecCCCCcHHHHHHH
Confidence 45677888899999999999999999987664
No 268
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=21.81 E-value=95 Score=25.89 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=25.1
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHH
Q 019968 34 ILIFLSVGGSVIPMRVMESDSIASVKLRI 62 (333)
Q Consensus 34 M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI 62 (333)
|+|.++.+++.+..++..+.|..+|..++
T Consensus 1 mkI~i~i~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKITIGGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEEEETTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEEEECCEEEEEEECCCHHHHHHHHhC
Confidence 89999999999999999998888887654
No 269
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=21.69 E-value=1.7e+02 Score=30.03 Aligned_cols=70 Identities=17% Similarity=0.276 Sum_probs=50.1
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhC--CCCcceEEEEC----Ce--ecccCCccccccccccccceeeee
Q 019968 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNG--FFVKKQKLVFE----GR--ELARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 34 M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~g--ip~~~Q~Lif~----G~--~L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
|.+.++....+..+++.++|+.+-|-.++-.-.. ..+++..+.-+ |. .+. .++++.+.|+++|+++.|..
T Consensus 1 Mi~rfRsk~G~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l-~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEGQRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLL-KDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCCceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecc-cccChhhhccccCcEEEEEe
Confidence 4455555556788999999999999888887644 34445555432 22 133 57999999999999988876
No 270
>PF03752 ALF: Short repeats of unknown function; InterPro: IPR005506 This set of repeats is found in a small family of secreted proteins of no known function, which may be involved in signal transduction.
Probab=21.66 E-value=54 Score=22.40 Aligned_cols=21 Identities=52% Similarity=0.662 Sum_probs=15.4
Q ss_pred HHHHHhhccC-CCCchhh--HHHH
Q 019968 293 IVREAQDAVL-PGTSEDG--FLES 313 (333)
Q Consensus 293 ~~~~~~~~~~-~~~~~~~--~~~~ 313 (333)
-|++|++++| -|+.|++ ||++
T Consensus 14 ~vr~AA~~AL~~G~~~~l~~FL~~ 37 (43)
T PF03752_consen 14 AVRAAAQAALDAGTPEALREFLET 37 (43)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4788888888 8988863 5543
No 271
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=21.21 E-value=2.5e+02 Score=21.68 Aligned_cols=61 Identities=20% Similarity=0.399 Sum_probs=38.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHhcC-CCCCCCceEEE---E---CCeecCCCCcccccCCCCCCEEEEEee
Q 019968 120 KVFEFHVERGRNVGYVKQQIAKKGR-EFVDLKNQELI---C---DGEELEDQRLITDICKRNEAVIHLLVR 183 (333)
Q Consensus 120 k~~~l~V~~sdTV~~LK~~I~~~~G-ip~~~~~QrLi---f---~Gk~LeD~~tL~dy~I~~gsvIhLv~r 183 (333)
+.|-+-.+++.|+..|+..|.+++. .- |....+. + .|--|+.+.++.|.- ..|+++.++++
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLY--P~~~~~~I~~LQD~~~cDLD~d~~V~DVf-~~~~~vrvi~~ 70 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLY--PNEPELEILSLQDSDGCDLDPDFLVKDVF-NSNNVVRVILK 70 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHC--CCCCCceEEEeecCCCCCCCcccEeeeee-ccCCEEEEEec
Confidence 4566667899999999999999875 23 2222222 1 344455555666633 36677777664
No 272
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=21.14 E-value=4e+02 Score=20.83 Aligned_cols=58 Identities=5% Similarity=-0.010 Sum_probs=39.5
Q ss_pred eeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968 116 TVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (333)
Q Consensus 116 t~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~ 182 (333)
+.+|+.+.+ ....||.+|-.. .+++ +..--+..+|..+ .......+-+++|+.|.++.
T Consensus 22 ~VNG~~~~~--~~~~tl~~LL~~----l~~~--~~~vAVevNg~iV-pr~~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 22 SINDQSIQV--DISSSLAQIIAQ----LSLP--ELGCVFAINNQVV-PRSEWQSTVLSSGDAISLFQ 79 (84)
T ss_pred EECCeEEEc--CCCCcHHHHHHH----cCCC--CceEEEEECCEEe-CHHHcCcccCCCCCEEEEEE
Confidence 446775544 567788877553 3666 6666677899988 33445667789999998864
No 273
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=20.34 E-value=2.6e+02 Score=22.27 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=30.5
Q ss_pred eeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCC
Q 019968 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREF 146 (333)
Q Consensus 112 I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip 146 (333)
|.|-..+|....+.|+...|+.++=+.+..+....
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~ 39 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQ 39 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCC
Confidence 44556789999999999999999999999998876
No 274
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=20.11 E-value=1.6e+02 Score=24.28 Aligned_cols=35 Identities=20% Similarity=0.040 Sum_probs=27.7
Q ss_pred eeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCC
Q 019968 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREF 146 (333)
Q Consensus 112 I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip 146 (333)
|+|-..+|.+..+.|....+-.++|.++-.|.|.+
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~ 37 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLP 37 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCc
Confidence 45557789999999999999999999999999987
Done!