Query 019968
Match_columns 333
No_of_seqs 265 out of 1905
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 09:47:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019968.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019968hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u30_A Ubiquitin, linear DI-ub 100.0 4E-35 1.4E-39 257.6 18.1 159 24-185 11-170 (172)
2 3rt3_B Ubiquitin-like protein 100.0 2E-34 6.9E-39 249.5 18.2 151 33-186 2-156 (159)
3 3b08_A Polyubiquitin-C, ubiqui 100.0 3.5E-32 1.2E-36 231.9 18.6 149 34-185 1-150 (152)
4 3rt3_B Ubiquitin-like protein 99.9 8.5E-27 2.9E-31 201.5 12.4 139 109-251 2-158 (159)
5 3u30_A Ubiquitin, linear DI-ub 99.9 1.3E-26 4.3E-31 203.4 12.4 139 108-250 19-172 (172)
6 3b08_A Polyubiquitin-C, ubiqui 99.9 1.3E-24 4.4E-29 185.0 12.9 137 110-250 1-152 (152)
7 4eew_A Large proline-rich prot 99.8 6.5E-19 2.2E-23 137.6 9.3 88 93-183 1-88 (88)
8 3plu_A Ubiquitin-like modifier 99.7 3.8E-18 1.3E-22 135.9 9.3 78 102-181 14-91 (93)
9 3phx_B Ubiquitin-like protein 99.7 5.8E-18 2E-22 129.5 9.5 75 108-184 3-77 (79)
10 2kdi_A Ubiquitin, vacuolar pro 99.7 4.8E-19 1.6E-23 146.1 2.3 103 31-134 7-113 (114)
11 2faz_A Ubiquitin-like containi 99.7 2.9E-17 1E-21 125.1 9.1 76 108-185 1-78 (78)
12 4dwf_A HLA-B-associated transc 99.7 5.1E-17 1.8E-21 127.3 9.7 78 107-187 3-80 (90)
13 2kk8_A Uncharacterized protein 99.7 3E-17 1E-21 128.2 8.2 75 108-184 9-84 (84)
14 3phx_B Ubiquitin-like protein 99.7 5.2E-17 1.8E-21 124.2 9.2 75 32-107 3-78 (79)
15 4fbj_B NEDD8; effector-HOST ta 99.7 4.2E-17 1.4E-21 128.0 8.8 75 110-186 1-75 (88)
16 1yx5_B Ubiquitin; proteasome, 99.7 5.6E-17 1.9E-21 129.4 8.7 91 34-125 1-92 (98)
17 2lxa_A Ubiquitin-like protein 99.7 3.7E-17 1.3E-21 128.9 7.3 74 110-185 2-79 (87)
18 3v6c_B Ubiquitin; structural g 99.7 8.9E-17 3E-21 126.6 9.3 76 107-184 15-90 (91)
19 3dbh_I NEDD8; cell cycle, acti 99.7 9.8E-17 3.4E-21 124.6 9.2 82 27-109 6-88 (88)
20 1uh6_A Ubiquitin-like 5; beta- 99.7 5.6E-17 1.9E-21 131.0 7.7 72 109-182 28-99 (100)
21 2uyz_B Small ubiquitin-related 99.7 9.3E-17 3.2E-21 122.7 8.6 75 109-185 3-77 (79)
22 4a20_A Ubiquitin-like protein 99.7 1.3E-16 4.4E-21 128.5 9.5 77 107-185 17-97 (98)
23 3plu_A Ubiquitin-like modifier 99.7 1E-16 3.5E-21 127.6 8.5 73 30-103 18-91 (93)
24 3v6c_B Ubiquitin; structural g 99.7 1.6E-16 5.4E-21 125.1 9.5 79 28-107 12-91 (91)
25 2wyq_A HHR23A, UV excision rep 99.7 2.2E-16 7.4E-21 122.0 10.0 77 107-185 3-82 (85)
26 1wgh_A Ubiquitin-like 3, HCG-1 99.7 2E-16 6.7E-21 131.2 10.3 80 106-185 13-100 (116)
27 1wyw_B Ubiquitin-like protein 99.7 1.5E-16 5E-21 127.3 9.0 78 106-185 18-95 (97)
28 3dbh_I NEDD8; cell cycle, acti 99.7 1.3E-16 4.5E-21 123.9 8.4 77 107-185 10-86 (88)
29 1ndd_A NEDD8, protein (ubiquit 99.7 2.5E-16 8.6E-21 118.4 9.3 74 110-185 1-74 (76)
30 2hj8_A Interferon-induced 17 k 99.7 1.5E-16 5.1E-21 124.8 8.1 76 108-185 3-78 (88)
31 2kdi_A Ubiquitin, vacuolar pro 99.7 5E-17 1.7E-21 134.0 5.3 99 108-208 8-112 (114)
32 2dzi_A Ubiquitin-like protein 99.7 4.1E-16 1.4E-20 119.1 10.1 77 29-106 3-80 (81)
33 3m62_B UV excision repair prot 99.7 1.6E-16 5.3E-21 129.3 8.1 75 110-186 2-76 (106)
34 4fbj_B NEDD8; effector-HOST ta 99.7 1.9E-16 6.6E-21 124.2 8.3 76 34-110 1-77 (88)
35 3m63_B Ubiquitin domain-contai 99.7 5.3E-17 1.8E-21 131.1 5.1 94 86-184 7-100 (101)
36 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 3.3E-16 1.1E-20 123.9 9.5 76 109-186 1-76 (96)
37 1sif_A Ubiquitin; hydrophobic 99.7 2.8E-16 9.5E-21 123.3 8.7 76 108-185 8-83 (88)
38 1uel_A HHR23B, UV excision rep 99.7 5.7E-16 2E-20 123.2 10.6 75 110-186 1-78 (95)
39 2dzi_A Ubiquitin-like protein 99.7 3.7E-16 1.3E-20 119.4 9.0 76 107-184 5-80 (81)
40 4hcn_B Polyubiquitin, ubiquiti 99.7 2.6E-16 8.8E-21 125.9 8.4 81 28-109 17-98 (98)
41 1se9_A Ubiquitin family; ubiqu 99.7 3E-16 1E-20 131.7 9.2 79 107-185 14-104 (126)
42 2kk8_A Uncharacterized protein 99.6 2.7E-16 9.3E-21 122.7 8.4 74 32-106 9-84 (84)
43 1wh3_A 59 kDa 2'-5'-oligoadeny 99.6 4.7E-16 1.6E-20 120.8 9.6 77 107-185 5-81 (87)
44 3n3k_B Ubiquitin; hydrolase, p 99.6 3.3E-16 1.1E-20 120.7 8.6 75 109-185 3-77 (85)
45 3a9j_A Ubiquitin; protein comp 99.6 5.6E-16 1.9E-20 116.5 9.5 74 110-185 1-74 (76)
46 4hcn_B Polyubiquitin, ubiquiti 99.6 3.6E-16 1.2E-20 125.0 8.8 77 107-185 20-96 (98)
47 4ajy_B Transcription elongatio 99.6 4.7E-16 1.6E-20 128.9 9.2 75 110-186 1-83 (118)
48 1wy8_A NP95-like ring finger p 99.6 8.1E-16 2.8E-20 120.1 10.1 76 108-185 6-83 (89)
49 2kan_A Uncharacterized protein 99.6 6.7E-16 2.3E-20 123.0 9.5 76 107-185 13-89 (94)
50 2fnj_B Transcription elongatio 99.6 3.7E-16 1.3E-20 129.7 8.2 73 110-184 1-81 (118)
51 3mtn_B UBA80, ubcep1, ubiquiti 99.6 6.5E-16 2.2E-20 118.9 9.0 75 109-185 3-77 (85)
52 2faz_A Ubiquitin-like containi 99.6 6.8E-16 2.3E-20 117.5 8.9 74 33-107 2-78 (78)
53 4dwf_A HLA-B-associated transc 99.6 8.2E-16 2.8E-20 120.4 9.5 76 31-108 3-79 (90)
54 2bwf_A Ubiquitin-like protein 99.6 1E-15 3.6E-20 115.7 9.8 72 110-184 5-76 (77)
55 1wy8_A NP95-like ring finger p 99.6 9.3E-16 3.2E-20 119.7 9.6 79 30-109 4-85 (89)
56 4eew_A Large proline-rich prot 99.6 1E-15 3.5E-20 119.4 9.3 73 31-105 15-88 (88)
57 2uyz_B Small ubiquitin-related 99.6 5.4E-16 1.8E-20 118.5 7.5 77 32-109 2-79 (79)
58 1ndd_A NEDD8, protein (ubiquit 99.6 7.5E-16 2.6E-20 115.8 8.0 75 34-109 1-76 (76)
59 1wh3_A 59 kDa 2'-5'-oligoadeny 99.6 1.2E-15 4.2E-20 118.4 9.5 78 31-109 5-83 (87)
60 2kan_A Uncharacterized protein 99.6 1.5E-15 5.2E-20 120.9 10.2 82 26-109 8-91 (94)
61 1v2y_A 3300001G02RIK protein; 99.6 2.9E-16 9.8E-21 128.0 6.0 79 109-189 7-101 (105)
62 3l0w_B Monoubiquitinated proli 99.6 2.3E-15 8E-20 132.2 11.9 74 110-185 1-74 (169)
63 2hj8_A Interferon-induced 17 k 99.6 6.3E-16 2.2E-20 121.2 7.3 77 32-109 3-80 (88)
64 1uh6_A Ubiquitin-like 5; beta- 99.6 8.3E-16 2.9E-20 124.1 7.9 74 30-104 25-99 (100)
65 3mtn_B UBA80, ubcep1, ubiquiti 99.6 1.3E-15 4.6E-20 117.1 8.7 77 32-109 2-79 (85)
66 2l7r_A Ubiquitin-like protein 99.6 9.4E-16 3.2E-20 121.6 8.1 75 107-185 17-91 (93)
67 2gow_A HCG-1 protein, ubiquiti 99.6 9.2E-16 3.1E-20 128.7 8.4 79 107-185 15-101 (125)
68 1ttn_A DC-UBP, dendritic cell- 99.6 1.1E-15 3.9E-20 124.0 8.7 76 108-185 22-97 (106)
69 3a9j_A Ubiquitin; protein comp 99.6 1.6E-15 5.5E-20 113.9 8.7 75 34-109 1-76 (76)
70 3n3k_B Ubiquitin; hydrolase, p 99.6 8.3E-16 2.8E-20 118.4 7.2 77 32-109 2-79 (85)
71 2ojr_A Ubiquitin; lanthide-bin 99.6 2.5E-15 8.6E-20 122.9 10.5 91 93-185 11-109 (111)
72 3k9o_B Ubiquitin, UBB+1; E2-25 99.6 1.4E-15 4.8E-20 120.3 8.7 79 33-112 1-80 (96)
73 3b1l_X E3 ubiquitin-protein li 99.4 4.5E-17 1.6E-21 123.3 0.0 74 110-185 1-74 (76)
74 3vdz_A Ubiquitin-40S ribosomal 99.6 2.1E-15 7.1E-20 123.6 9.5 76 108-185 34-109 (111)
75 1sif_A Ubiquitin; hydrophobic 99.6 1.4E-15 4.8E-20 119.3 8.1 76 33-109 9-85 (88)
76 1wyw_B Ubiquitin-like protein 99.6 1.2E-15 4.2E-20 121.9 7.8 79 30-109 18-97 (97)
77 2l7r_A Ubiquitin-like protein 99.6 1.1E-15 3.8E-20 121.2 7.2 78 30-109 16-93 (93)
78 1wgd_A Homocysteine-responsive 99.6 1.7E-15 5.9E-20 119.7 8.3 76 108-185 6-87 (93)
79 1yx5_B Ubiquitin; proteasome, 99.6 3E-15 1E-19 119.3 9.7 74 110-185 1-74 (98)
80 3vdz_A Ubiquitin-40S ribosomal 99.6 3.1E-15 1.1E-19 122.5 9.3 78 31-109 33-111 (111)
81 1j8c_A Ubiquitin-like protein 99.6 1.3E-14 4.5E-19 121.5 13.3 78 31-109 30-107 (125)
82 1v2y_A 3300001G02RIK protein; 99.6 7.9E-16 2.7E-20 125.4 5.7 79 30-108 4-98 (105)
83 2wyq_A HHR23A, UV excision rep 99.6 4.3E-15 1.5E-19 114.7 9.5 76 31-107 3-82 (85)
84 1ttn_A DC-UBP, dendritic cell- 99.6 2.3E-15 7.7E-20 122.2 8.2 83 25-108 15-98 (106)
85 3l0w_B Monoubiquitinated proli 99.6 3E-15 1E-19 131.5 9.4 82 34-116 1-83 (169)
86 1yqb_A Ubiquilin 3; structural 99.6 3.6E-15 1.2E-19 120.0 9.1 78 106-186 19-96 (100)
87 2lxa_A Ubiquitin-like protein 99.6 1E-15 3.4E-20 120.7 5.7 72 34-106 2-78 (87)
88 1wju_A NEDD8 ultimate buster-1 99.6 2.9E-15 9.9E-20 121.0 8.4 68 112-181 18-89 (100)
89 2bwf_A Ubiquitin-like protein 99.6 7.1E-15 2.4E-19 111.1 10.0 73 33-106 4-76 (77)
90 2klc_A Ubiquilin-1; ubiquitin- 99.6 4.9E-15 1.7E-19 119.4 9.7 77 106-185 22-98 (101)
91 1we6_A Splicing factor, putati 99.6 3.2E-15 1.1E-19 122.2 8.0 78 106-185 24-105 (111)
92 4a20_A Ubiquitin-like protein 99.6 4.4E-15 1.5E-19 119.5 8.7 76 30-106 16-96 (98)
93 3q3f_A Ribonuclease/ubiquitin 99.6 2.7E-15 9.2E-20 134.1 7.8 83 32-115 104-187 (189)
94 1wx8_A Riken cDNA 4931431F19; 99.6 2.8E-15 9.6E-20 119.0 6.9 76 107-185 15-90 (96)
95 2kdb_A Homocysteine-responsive 99.6 2.8E-15 9.7E-20 120.8 6.6 73 108-181 22-99 (99)
96 4ajy_B Transcription elongatio 99.6 7.4E-15 2.5E-19 121.7 9.2 74 34-108 1-83 (118)
97 1wx8_A Riken cDNA 4931431F19; 99.6 4.7E-15 1.6E-19 117.6 7.6 78 31-109 15-92 (96)
98 1wgg_A Ubiquitin carboxyl-term 99.6 1E-14 3.5E-19 116.6 9.0 77 30-108 4-81 (96)
99 3m62_B UV excision repair prot 99.6 3.7E-15 1.2E-19 121.1 6.5 73 34-107 2-75 (106)
100 1uel_A HHR23B, UV excision rep 99.6 1.1E-14 3.8E-19 115.7 8.8 73 34-107 1-77 (95)
101 1wgd_A Homocysteine-responsive 99.6 5.8E-15 2E-19 116.7 7.1 78 31-109 5-89 (93)
102 2ojr_A Ubiquitin; lanthide-bin 99.6 2.5E-14 8.4E-19 117.0 11.0 78 31-109 33-111 (111)
103 1wgh_A Ubiquitin-like 3, HCG-1 99.5 2E-14 6.9E-19 119.1 10.6 78 29-107 12-100 (116)
104 3b1l_X E3 ubiquitin-protein li 99.3 3.6E-16 1.2E-20 118.3 0.0 74 34-108 1-75 (76)
105 1v5t_A 8430435I17RIK protein; 99.5 7.2E-15 2.5E-19 115.8 7.5 77 30-107 4-84 (90)
106 4dbg_A Ranbp-type and C3HC4-ty 99.5 1.5E-14 5.1E-19 117.8 9.5 74 109-184 24-100 (105)
107 2klc_A Ubiquilin-1; ubiquitin- 99.5 2.3E-14 7.8E-19 115.4 10.3 77 31-108 23-99 (101)
108 1wx7_A Ubiquilin 3; ubiquitin- 99.5 1.4E-14 4.8E-19 117.3 8.9 76 108-186 16-91 (106)
109 3q3f_A Ribonuclease/ubiquitin 99.5 8.7E-15 3E-19 130.9 8.3 76 109-186 105-180 (189)
110 1j8c_A Ubiquitin-like protein 99.5 1.7E-14 5.8E-19 120.8 9.4 75 108-185 31-105 (125)
111 2fnj_B Transcription elongatio 99.5 1.5E-14 5E-19 120.1 8.8 71 34-105 1-80 (118)
112 1v5o_A 1700011N24RIK protein; 99.5 1.5E-14 5.2E-19 116.5 8.1 76 108-185 6-86 (102)
113 1yqb_A Ubiquilin 3; structural 99.5 2.7E-14 9.1E-19 114.9 9.4 78 30-109 19-97 (100)
114 1v5o_A 1700011N24RIK protein; 99.5 2.3E-14 8E-19 115.4 8.9 79 30-109 4-88 (102)
115 2kd0_A LRR repeats and ubiquit 99.5 4.6E-14 1.6E-18 110.1 10.0 75 30-105 9-83 (85)
116 3u5e_m 60S ribosomal protein L 99.5 8.2E-16 2.8E-20 128.9 0.0 74 110-185 1-74 (128)
117 1we6_A Splicing factor, putati 99.5 1.8E-14 6.2E-19 117.7 7.6 77 32-109 26-107 (111)
118 4dbg_A Ranbp-type and C3HC4-ty 99.5 4.4E-14 1.5E-18 115.0 9.7 76 29-105 20-99 (105)
119 1wxv_A BAG-family molecular ch 99.5 4.3E-14 1.5E-18 111.3 9.2 78 30-107 4-86 (92)
120 2kd0_A LRR repeats and ubiquit 99.5 4.9E-14 1.7E-18 110.0 9.5 72 111-184 13-84 (85)
121 1wia_A Hypothetical ubiquitin- 99.5 3.5E-14 1.2E-18 112.5 8.3 74 108-186 6-80 (95)
122 1x1m_A Ubiquitin-like protein 99.5 3.4E-14 1.2E-18 115.5 8.3 76 108-185 11-101 (107)
123 1we7_A SF3A1 protein; structur 99.5 6.3E-14 2.2E-18 115.2 9.7 66 118-185 44-109 (115)
124 1wx7_A Ubiquilin 3; ubiquitin- 99.5 6.1E-14 2.1E-18 113.5 9.2 77 31-109 15-92 (106)
125 1wju_A NEDD8 ultimate buster-1 99.5 1.8E-14 6E-19 116.4 5.6 73 33-107 17-92 (100)
126 3u5c_f 40S ribosomal protein S 99.5 2E-15 7E-20 130.6 0.0 74 110-185 1-74 (152)
127 1v86_A DNA segment, CHR 7, way 99.5 4E-14 1.4E-18 112.8 7.3 75 30-106 14-88 (95)
128 1v5t_A 8430435I17RIK protein; 99.5 6.6E-14 2.3E-18 110.3 8.2 75 108-185 6-84 (90)
129 2dzm_A FAS-associated factor 1 99.5 5.3E-14 1.8E-18 113.6 7.6 76 30-107 5-83 (100)
130 1se9_A Ubiquitin family; ubiqu 99.5 7.9E-14 2.7E-18 116.9 8.8 78 31-109 14-106 (126)
131 3m63_B Ubiquitin domain-contai 99.5 1.5E-14 5E-19 116.7 4.1 75 31-106 26-100 (101)
132 3u5e_m 60S ribosomal protein L 99.5 3.4E-15 1.2E-19 125.2 0.0 75 34-109 1-76 (128)
133 1wia_A Hypothetical ubiquitin- 99.5 1.2E-13 4.1E-18 109.4 8.5 75 30-108 4-80 (95)
134 1we7_A SF3A1 protein; structur 99.5 1.3E-13 4.6E-18 113.3 9.0 77 32-109 24-111 (115)
135 1wgg_A Ubiquitin carboxyl-term 99.5 9E-14 3.1E-18 111.1 7.7 74 108-185 6-80 (96)
136 2gow_A HCG-1 protein, ubiquiti 99.5 1E-13 3.5E-18 116.2 8.3 77 31-108 15-102 (125)
137 2dzm_A FAS-associated factor 1 99.5 5.2E-14 1.8E-18 113.6 6.2 73 109-184 8-82 (100)
138 1wxv_A BAG-family molecular ch 99.5 2.2E-13 7.4E-18 107.3 8.9 75 108-185 6-86 (92)
139 2kdb_A Homocysteine-responsive 99.5 8.1E-14 2.8E-18 112.3 6.6 72 31-103 21-99 (99)
140 4b6w_A Tubulin-specific chaper 99.4 1.7E-13 6E-18 107.5 8.0 66 118-185 13-85 (86)
141 2kjr_A CG11242; UBL, ubiquitin 99.4 4.1E-13 1.4E-17 107.3 10.2 78 26-103 8-93 (95)
142 2kjr_A CG11242; UBL, ubiquitin 99.4 3E-13 1E-17 108.1 9.1 74 107-182 13-94 (95)
143 3u5c_f 40S ribosomal protein S 99.4 9.5E-15 3.3E-19 126.4 0.0 75 34-109 1-76 (152)
144 2dzj_A Synaptic glycoprotein S 99.4 1.3E-13 4.4E-18 108.6 5.9 70 109-180 10-85 (88)
145 2xzm_9 RPS31E; ribosome, trans 99.4 2.1E-14 7.2E-19 128.2 0.0 69 110-185 1-69 (189)
146 4b6w_A Tubulin-specific chaper 99.4 5.9E-13 2E-17 104.5 7.9 72 33-105 2-83 (86)
147 3ai5_A Yeast enhanced green fl 99.4 6.4E-13 2.2E-17 126.8 9.8 77 106-184 230-306 (307)
148 1v86_A DNA segment, CHR 7, way 99.4 2.1E-13 7.3E-18 108.5 5.4 72 109-184 17-88 (95)
149 2daf_A FLJ35834 protein; hypot 99.4 1.3E-12 4.3E-17 108.0 9.5 90 29-119 11-102 (118)
150 2kj6_A Tubulin folding cofacto 99.4 9.4E-13 3.2E-17 105.7 8.1 75 30-104 11-94 (97)
151 2daf_A FLJ35834 protein; hypot 99.4 1.1E-12 3.9E-17 108.2 8.7 74 110-185 16-90 (118)
152 2dzj_A Synaptic glycoprotein S 99.4 8.5E-13 2.9E-17 103.9 6.9 72 30-102 7-85 (88)
153 1x1m_A Ubiquitin-like protein 99.4 6.6E-13 2.3E-17 107.8 6.4 76 31-107 10-101 (107)
154 2kj6_A Tubulin folding cofacto 99.4 1.2E-12 4.2E-17 105.0 7.3 72 110-183 15-95 (97)
155 1oqy_A HHR23A, UV excision rep 99.3 1E-12 3.4E-17 128.4 7.7 75 108-184 6-84 (368)
156 1wf9_A NPL4 family protein; be 99.3 1.6E-12 5.3E-17 105.8 5.7 74 109-185 7-96 (107)
157 3ai5_A Yeast enhanced green fl 99.3 3.7E-12 1.3E-16 121.6 9.0 76 30-106 230-306 (307)
158 1v6e_A Cytoskeleton-associated 99.3 5.4E-12 1.8E-16 100.2 8.0 72 33-104 7-86 (95)
159 2xzm_9 RPS31E; ribosome, trans 99.3 2.8E-13 9.6E-18 120.9 0.0 71 34-110 1-72 (189)
160 1t0y_A Tubulin folding cofacto 99.3 1.1E-11 3.7E-16 103.1 9.1 74 32-105 5-86 (122)
161 2io1_B Small ubiquitin-related 99.3 1.4E-11 4.8E-16 98.2 9.2 76 108-185 6-81 (94)
162 1oqy_A HHR23A, UV excision rep 99.3 3.7E-12 1.3E-16 124.4 6.9 79 29-108 3-86 (368)
163 1v6e_A Cytoskeleton-associated 99.3 7.5E-12 2.6E-16 99.4 7.2 72 110-183 8-87 (95)
164 1wf9_A NPL4 family protein; be 99.2 5.7E-12 1.9E-16 102.4 5.9 76 30-106 4-95 (107)
165 1t0y_A Tubulin folding cofacto 99.2 2.7E-11 9.3E-16 100.7 8.6 74 109-184 6-87 (122)
166 3shq_A UBLCP1; phosphatase, hy 99.2 1.7E-11 5.8E-16 117.7 7.5 77 31-108 3-82 (320)
167 2io1_B Small ubiquitin-related 99.2 4.6E-11 1.6E-15 95.2 8.4 79 30-109 4-83 (94)
168 2kzr_A Ubiquitin thioesterase 99.2 3.1E-11 1E-15 94.0 5.6 71 110-183 1-77 (86)
169 1wm3_A Ubiquitin-like protein 99.2 1.1E-10 3.9E-15 88.1 8.5 70 110-181 2-71 (72)
170 2io0_B Small ubiquitin-related 99.2 1.8E-10 6E-15 91.3 9.9 76 108-185 4-79 (91)
171 3a4r_A Nfatc2-interacting prot 99.1 4.5E-10 1.5E-14 86.5 8.9 73 107-181 5-78 (79)
172 2d07_B Ubiquitin-like protein 99.1 4.5E-10 1.5E-14 89.2 9.0 76 107-184 15-90 (93)
173 3shq_A UBLCP1; phosphatase, hy 99.1 1.4E-10 4.9E-15 111.2 7.0 75 109-186 5-82 (320)
174 2kzr_A Ubiquitin thioesterase 99.0 2.4E-10 8.1E-15 89.0 6.0 71 34-105 1-77 (86)
175 2io0_B Small ubiquitin-related 99.0 6.7E-10 2.3E-14 88.0 8.6 78 31-109 3-81 (91)
176 2eke_C Ubiquitin-like protein 99.0 1.9E-09 6.5E-14 87.8 10.7 85 23-108 21-105 (106)
177 2eke_C Ubiquitin-like protein 99.0 1.1E-09 3.8E-14 89.1 9.2 75 107-184 29-103 (106)
178 2d07_B Ubiquitin-like protein 99.0 1.2E-09 4E-14 86.8 8.9 78 30-108 14-92 (93)
179 1wz0_A Ubiquitin-like protein 99.0 5.4E-10 1.9E-14 90.6 6.8 77 107-185 22-98 (104)
180 1wjn_A Tubulin-folding protein 99.0 1E-09 3.4E-14 87.3 7.8 75 31-105 7-92 (97)
181 1wm3_A Ubiquitin-like protein 99.0 1.4E-09 4.9E-14 82.0 8.0 69 34-103 2-71 (72)
182 2k8h_A Small ubiquitin protein 99.0 2E-09 6.9E-14 88.1 9.4 80 30-110 23-103 (110)
183 3a4r_A Nfatc2-interacting prot 99.0 2E-09 6.8E-14 82.8 8.5 73 30-103 4-78 (79)
184 2k8h_A Small ubiquitin protein 99.0 8.1E-10 2.8E-14 90.5 6.2 78 107-186 24-101 (110)
185 1wz0_A Ubiquitin-like protein 98.9 1.8E-09 6.2E-14 87.5 7.9 79 30-109 21-100 (104)
186 1wjn_A Tubulin-folding protein 98.9 7.8E-09 2.7E-13 82.1 8.9 72 110-183 10-92 (97)
187 3kyd_D Small ubiquitin-related 98.5 4.6E-07 1.6E-11 74.6 9.6 75 108-184 39-113 (115)
188 3pge_A SUMO-modified prolifera 98.5 5.1E-07 1.7E-11 81.1 9.8 78 30-108 26-103 (200)
189 3pge_A SUMO-modified prolifera 98.4 1.6E-06 5.4E-11 77.9 10.9 76 107-185 27-102 (200)
190 3tix_A Ubiquitin-like protein 98.4 7.4E-07 2.5E-11 79.4 8.2 79 31-110 55-133 (207)
191 3kyd_D Small ubiquitin-related 98.3 1.6E-06 5.5E-11 71.4 8.7 75 31-106 38-113 (115)
192 3tix_A Ubiquitin-like protein 98.2 3.8E-06 1.3E-10 74.8 8.0 77 107-186 55-131 (207)
193 2pjh_A Protein NPL4, nuclear p 98.1 2.1E-06 7.3E-11 66.0 4.0 71 32-103 3-78 (80)
194 3v7o_A Minor nucleoprotein VP3 98.0 7.1E-07 2.4E-11 80.5 0.1 80 30-110 18-97 (227)
195 4efo_A Serine/threonine-protei 98.0 2E-05 7E-10 62.5 8.3 66 116-183 20-88 (94)
196 4efo_A Serine/threonine-protei 98.0 2.8E-05 9.5E-10 61.7 8.3 50 34-83 13-64 (94)
197 3goe_A DNA repair protein RAD6 97.9 7E-05 2.4E-09 57.3 9.3 70 111-182 11-81 (82)
198 2pjh_A Protein NPL4, nuclear p 97.9 6.3E-06 2.2E-10 63.4 3.4 70 109-181 4-78 (80)
199 3ivf_A Talin-1; FERM domain, c 97.9 0.00072 2.5E-08 65.2 18.5 142 34-180 4-164 (371)
200 3v7o_A Minor nucleoprotein VP3 97.9 1.9E-06 6.4E-11 77.8 0.0 78 105-185 17-94 (227)
201 3goe_A DNA repair protein RAD6 97.7 0.00015 5.2E-09 55.4 8.6 70 34-104 10-81 (82)
202 3uf8_A Ubiquitin-like protein 97.6 0.00059 2E-08 61.3 12.7 79 105-186 17-95 (209)
203 3uf8_A Ubiquitin-like protein 97.6 0.00036 1.2E-08 62.7 11.3 180 29-226 17-205 (209)
204 2jxx_A Nfatc2-interacting prot 97.5 0.00055 1.9E-08 54.5 9.1 72 108-181 24-96 (97)
205 3ix6_A TS, tsase, thymidylate 97.4 2E-05 6.9E-10 76.4 -0.0 82 31-113 19-100 (360)
206 2jxx_A Nfatc2-interacting prot 97.4 0.00071 2.4E-08 53.9 8.7 73 30-103 22-96 (97)
207 2l76_A Nfatc2-interacting prot 97.3 0.0019 6.5E-08 51.1 9.6 75 30-105 18-92 (95)
208 2al3_A TUG long isoform; TUG U 97.2 0.001 3.4E-08 52.3 7.6 76 107-184 7-82 (90)
209 2kc2_A Talin-1, F1; FERM, adhe 97.2 0.00044 1.5E-08 57.8 5.6 70 111-180 13-119 (128)
210 2al3_A TUG long isoform; TUG U 97.1 0.00064 2.2E-08 53.4 5.3 75 31-106 7-82 (90)
211 3ix6_A TS, tsase, thymidylate 97.1 7.8E-05 2.7E-09 72.3 0.0 78 105-185 17-94 (360)
212 4da1_A Protein phosphatase 1K, 97.0 0.0001 3.5E-09 71.9 0.0 83 31-114 28-110 (389)
213 2l76_A Nfatc2-interacting prot 96.9 0.0048 1.6E-07 48.8 8.8 73 110-185 22-94 (95)
214 2bps_A YUKD protein; ubiquitin 96.8 0.0028 9.4E-08 48.8 6.7 70 32-102 3-80 (81)
215 2kc2_A Talin-1, F1; FERM, adhe 96.7 0.0014 4.7E-08 54.7 4.6 70 35-105 13-122 (128)
216 4da1_A Protein phosphatase 1K, 96.5 0.00044 1.5E-08 67.3 0.0 75 108-185 29-103 (389)
217 2bps_A YUKD protein; ubiquitin 96.3 0.012 4.1E-07 45.2 7.2 64 117-180 14-80 (81)
218 3qx1_A FAS-associated factor 1 96.2 0.017 5.9E-07 44.0 7.6 69 110-181 8-81 (84)
219 3qx1_A FAS-associated factor 1 95.9 0.042 1.4E-06 41.8 8.8 73 31-104 5-82 (84)
220 2dzk_A UBX domain-containing p 95.7 0.067 2.3E-06 43.0 9.5 76 30-105 10-90 (109)
221 1wj4_A KIAA0794 protein; UBX d 95.5 0.11 3.9E-06 42.6 10.2 73 31-104 41-118 (124)
222 1wj4_A KIAA0794 protein; UBX d 95.4 0.06 2E-06 44.3 8.2 71 108-181 42-117 (124)
223 4e71_A Plexin-B2, MM1; transme 95.2 0.082 2.8E-06 42.9 8.2 65 119-183 23-110 (111)
224 3ivf_A Talin-1; FERM domain, c 94.9 0.14 4.8E-06 49.0 10.4 87 119-206 12-107 (371)
225 2dzk_A UBX domain-containing p 94.8 0.09 3.1E-06 42.2 7.6 73 109-183 13-90 (109)
226 2r2o_A Plexin-B1; effector dom 94.7 0.082 2.8E-06 44.4 7.3 77 31-108 22-131 (138)
227 4e71_A Plexin-B2, MM1; transme 94.2 0.15 5.3E-06 41.3 7.4 75 31-105 9-110 (111)
228 2cr5_A Reproduction 8; UBX dom 94.0 0.23 7.8E-06 39.7 8.2 80 25-105 15-98 (109)
229 3h6n_A Plexin-D1; structural g 94.0 0.31 1.1E-05 40.3 9.0 67 118-184 15-105 (127)
230 4e74_A Plexin-A4; RBD, structu 93.9 0.22 7.6E-06 40.7 8.0 66 119-184 26-115 (117)
231 3jyu_A Ubiquitin carboxyl-term 93.8 0.4 1.4E-05 43.3 10.4 66 44-109 153-224 (231)
232 2r2o_A Plexin-B1; effector dom 93.6 0.36 1.2E-05 40.5 8.9 66 120-185 41-130 (138)
233 4a3p_A Ubiquitin carboxyl-term 93.4 0.29 9.9E-06 43.8 8.6 66 44-109 141-212 (217)
234 2cr5_A Reproduction 8; UBX dom 93.4 0.25 8.5E-06 39.5 7.4 71 109-182 23-97 (109)
235 3h6n_A Plexin-D1; structural g 92.6 0.75 2.6E-05 38.0 9.2 75 32-106 3-105 (127)
236 1s3s_G P47 protein; AAA ATPase 92.6 0.29 1E-05 40.2 6.9 69 109-179 52-124 (127)
237 2ylm_A Ubiquitin carboxyl-term 91.4 0.83 2.8E-05 46.2 10.0 135 45-181 38-215 (530)
238 4e74_A Plexin-A4; RBD, structu 91.1 0.63 2.2E-05 38.0 7.2 76 31-106 11-115 (117)
239 3kuz_A Plexin-C1; structural g 90.7 1.1 3.8E-05 37.0 8.3 62 120-181 39-124 (126)
240 1oey_A P67-PHOX, neutrophil cy 90.5 0.79 2.7E-05 35.2 6.8 48 31-79 3-50 (83)
241 1ryj_A Unknown; beta/alpha pro 90.0 2.5 8.7E-05 30.6 9.1 64 33-106 4-67 (70)
242 1s3s_G P47 protein; AAA ATPase 89.9 0.4 1.4E-05 39.4 5.0 70 31-100 50-123 (127)
243 2ylm_A Ubiquitin carboxyl-term 89.9 1.9 6.6E-05 43.5 11.1 115 31-146 337-477 (530)
244 2daj_A KIAA0977 protein, COBL- 87.9 1 3.5E-05 34.8 5.6 63 110-174 11-76 (91)
245 2daj_A KIAA0977 protein, COBL- 86.1 2.2 7.7E-05 32.9 6.7 66 30-96 7-76 (91)
246 1vd2_A Protein kinase C, IOTA 84.1 5.6 0.00019 30.7 8.3 50 30-79 3-53 (89)
247 3jyu_A Ubiquitin carboxyl-term 83.5 3.8 0.00013 36.8 8.3 61 122-184 154-221 (231)
248 2juo_A GA-binding protein alph 83.2 4.9 0.00017 30.9 7.4 60 44-104 4-63 (89)
249 2l32_A Small archaeal modifier 83.0 2.5 8.6E-05 31.3 5.7 64 34-108 1-65 (74)
250 3ig3_A Plxna3 protein; plexin 82.8 7.4 0.00025 40.0 10.8 78 31-108 231-337 (627)
251 3hm6_X Plexin-B1; structural g 82.7 6.2 0.00021 40.6 10.2 78 31-108 255-364 (644)
252 3kuz_A Plexin-C1; structural g 82.2 3.1 0.00011 34.3 6.4 73 31-103 17-124 (126)
253 4a3p_A Ubiquitin carboxyl-term 82.2 3.6 0.00012 36.5 7.5 62 121-184 141-209 (217)
254 2juo_A GA-binding protein alph 78.6 10 0.00035 29.1 7.7 60 122-183 5-64 (89)
255 3ig3_A Plxna3 protein; plexin 78.0 6.9 0.00023 40.2 8.7 66 119-184 246-335 (627)
256 1vjk_A Molybdopterin convertin 77.6 12 0.0004 28.7 8.2 70 31-106 7-95 (98)
257 1tyg_B YJBS; alpha beta barrel 73.9 6.9 0.00024 29.9 5.9 66 31-106 18-84 (87)
258 3hm6_X Plexin-B1; structural g 73.5 9.8 0.00034 39.2 8.4 65 120-184 274-362 (644)
259 2kvr_A Ubiquitin carboxyl-term 72.8 3.3 0.00011 34.1 4.0 33 45-77 58-90 (130)
260 2cu3_A Unknown function protei 69.8 14 0.00046 26.0 6.3 60 38-106 2-61 (64)
261 2l32_A Small archaeal modifier 69.2 8.5 0.00029 28.3 5.2 60 110-181 1-60 (74)
262 1ryj_A Unknown; beta/alpha pro 68.5 29 0.001 24.8 8.6 62 109-182 4-65 (70)
263 1ip9_A BEM1 protein; ubiquitin 68.5 23 0.0008 27.1 7.6 43 32-76 11-53 (85)
264 3rpf_C Molybdopterin convertin 66.6 13 0.00043 26.9 5.7 57 46-108 15-73 (74)
265 1vjk_A Molybdopterin convertin 65.4 40 0.0014 25.6 8.7 70 108-182 8-93 (98)
266 1oey_A P67-PHOX, neutrophil cy 65.0 14 0.00049 28.1 5.8 44 113-158 7-50 (83)
267 2kvr_A Ubiquitin carboxyl-term 64.3 5 0.00017 33.0 3.4 33 122-156 58-90 (130)
268 1h4r_A Merlin; FERM, neurofibr 63.2 31 0.0011 31.5 9.1 75 108-184 21-99 (314)
269 4eut_A Serine/threonine-protei 61.2 18 0.00061 33.9 7.2 42 40-81 319-360 (396)
270 1ef1_A Moesin; membrane, FERM 60.7 28 0.00096 31.4 8.2 73 110-184 2-79 (294)
271 3dwg_C 9.5 kDa culture filtrat 59.3 26 0.00088 26.2 6.5 60 46-108 20-92 (93)
272 2kmc_A Fermitin family homolog 58.3 48 0.0017 26.1 7.8 72 110-181 20-97 (102)
273 1ef1_A Moesin; membrane, FERM 55.4 74 0.0025 28.5 10.1 70 33-103 1-76 (294)
274 1q1o_A Cell division control p 52.8 25 0.00086 27.6 5.4 37 33-69 5-49 (98)
275 3rpf_C Molybdopterin convertin 52.8 56 0.0019 23.3 7.2 55 123-182 15-69 (74)
276 1f0z_A THis protein; ubiquitin 52.7 22 0.00077 25.0 4.8 61 38-106 3-63 (66)
277 3po0_A Small archaeal modifier 51.8 43 0.0015 24.6 6.6 60 43-108 18-88 (89)
278 2qjl_A URM1, ubiquitin-related 50.9 78 0.0027 23.9 8.8 64 43-108 20-98 (99)
279 1wgk_A Riken cDNA 2900073H19 p 50.3 64 0.0022 25.5 7.7 75 32-109 10-108 (114)
280 1h4r_A Merlin; FERM, neurofibr 48.9 75 0.0026 28.9 9.1 71 31-103 20-96 (314)
281 2i1j_A Moesin; FERM, coiled-co 47.6 57 0.002 33.0 8.7 74 109-184 4-82 (575)
282 4eut_A Serine/threonine-protei 46.0 42 0.0014 31.2 7.0 60 120-181 322-384 (396)
283 2kl0_A Putative thiamin biosyn 45.2 34 0.0012 24.9 4.9 60 38-106 3-62 (73)
284 1wgr_A Growth factor receptor- 44.9 50 0.0017 25.9 6.1 41 31-71 7-48 (100)
285 2k5p_A THis protein, thiamine- 44.3 35 0.0012 25.2 4.9 63 38-106 3-66 (78)
286 3ge3_C Toluene-4-monooxygenase 42.9 1.1E+02 0.0037 23.3 7.4 61 122-182 17-82 (84)
287 3qa8_A MGC80376 protein; kinas 40.6 22 0.00076 36.9 4.4 52 117-170 319-371 (676)
288 2kmm_A Guanosine-3',5'-BIS(dip 40.1 47 0.0016 23.2 5.0 64 110-184 1-64 (73)
289 2i1j_A Moesin; FERM, coiled-co 40.1 1.1E+02 0.0036 31.1 9.3 70 32-103 3-79 (575)
290 1y8x_B Ubiquitin-activating en 39.6 43 0.0015 26.1 4.9 60 44-103 6-82 (98)
291 3qa8_A MGC80376 protein; kinas 39.6 23 0.0008 36.7 4.3 52 40-92 319-371 (676)
292 1tyg_B YJBS; alpha beta barrel 38.4 61 0.0021 24.5 5.5 63 108-182 19-82 (87)
293 2k9x_A Tburm1, uncharacterized 38.0 7.7 0.00026 30.9 0.3 74 33-109 4-102 (110)
294 3qij_A Protein 4.1; cytoskelet 36.8 85 0.0029 28.6 7.3 64 108-172 16-84 (296)
295 2g1e_A Hypothetical protein TA 34.8 1.1E+02 0.0039 22.1 6.6 59 47-107 19-88 (90)
296 1fm0_D Molybdopterin convertin 33.9 64 0.0022 23.1 4.9 58 43-107 17-79 (81)
297 1t3q_A Quinoline 2-oxidoreduct 33.3 50 0.0017 27.8 4.8 31 31-61 7-37 (168)
298 1rws_A Hypothetical protein PF 32.9 23 0.00079 25.8 2.2 52 46-107 24-75 (77)
299 2l52_A Methanosarcina acetivor 32.0 1.3E+02 0.0046 22.7 6.7 70 33-107 3-97 (99)
300 3po0_A Small archaeal modifier 31.6 1.5E+02 0.0051 21.5 7.6 58 120-182 18-84 (89)
301 2q5w_D Molybdopterin convertin 31.1 57 0.0019 23.1 4.2 57 43-106 16-74 (77)
302 2kmc_A Fermitin family homolog 30.3 2E+02 0.0068 22.6 7.9 72 33-104 19-98 (102)
303 2inc_C TOUB protein; DIIRON, 4 29.3 1.9E+02 0.0063 21.9 7.8 61 122-182 15-81 (83)
304 1vd2_A Protein kinase C, IOTA 28.6 1.9E+02 0.0065 22.0 6.9 46 112-159 7-54 (89)
305 1wgr_A Growth factor receptor- 27.6 92 0.0031 24.3 5.0 36 111-146 11-46 (100)
306 3ge3_C Toluene-4-monooxygenase 27.2 1.6E+02 0.0053 22.4 6.0 65 39-104 9-82 (84)
307 1wgy_A RAP guanine nucleotide 25.5 1.8E+02 0.0061 22.9 6.3 70 33-103 9-84 (104)
308 2lgx_A Fermitin family homolog 25.4 45 0.0015 26.7 2.8 69 111-180 28-99 (112)
309 2inc_C TOUB protein; DIIRON, 4 25.0 2.2E+02 0.0077 21.5 7.3 60 44-104 14-81 (83)
310 1n62_A Carbon monoxide dehydro 24.1 79 0.0027 26.8 4.4 29 33-61 3-31 (166)
311 3hrd_D Nicotinate dehydrogenas 23.8 88 0.003 26.4 4.6 28 33-60 3-30 (160)
312 3qij_A Protein 4.1; cytoskelet 23.5 79 0.0027 28.8 4.6 74 30-104 14-94 (296)
313 1ffv_A CUTS, iron-sulfur prote 23.5 83 0.0028 26.5 4.4 29 33-61 3-31 (163)
314 1wgy_A RAP guanine nucleotide 23.2 2.7E+02 0.0093 21.8 7.2 63 118-183 18-86 (104)
315 2hj1_A Hypothetical protein; s 22.8 2.6E+02 0.0088 21.4 7.1 68 31-104 10-84 (97)
316 2zjd_A Microtubule-associated 22.7 1.8E+02 0.0061 23.7 6.1 60 32-91 34-102 (130)
317 1rm6_C 4-hydroxybenzoyl-COA re 21.5 94 0.0032 26.0 4.3 29 34-62 3-31 (161)
318 2cu1_A Mitogen-activated prote 21.3 2.7E+02 0.0092 21.9 6.5 48 31-81 6-53 (103)
319 3onh_A Ubiquitin-activating en 20.4 1.5E+02 0.0051 24.2 5.1 51 131-181 21-77 (127)
No 1
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=4e-35 Score=257.60 Aligned_cols=159 Identities=32% Similarity=0.483 Sum_probs=145.6
Q ss_pred CCCCCCCCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceee
Q 019968 24 HRPEKLSNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHL 102 (333)
Q Consensus 24 ~~~~~~~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~L 102 (333)
.+.++.+...|+|+|+ ++|++++++|++++||.+||.+|+..+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|
T Consensus 11 ~~~~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~-d~~tL~~~~i~~~~~l~l 89 (172)
T 3u30_A 11 SSGLVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHL 89 (172)
T ss_dssp --------CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTGGGTCCTTCEEEE
T ss_pred CCCCCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCcccc-ccCCHhHcCCcccceeee
Confidence 3444556788999995 89999999999999999999999999999999999999999998 999999999999999999
Q ss_pred eeecccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968 103 VLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (333)
Q Consensus 103 v~rlsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~ 182 (333)
+++..++|+|+|++.+|++++++|++++||.+||++|++++|+| +++|+|+|+|++|+|+.+|++|+|++|++|||++
T Consensus 90 ~~~~~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip--~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~ 167 (172)
T 3u30_A 90 VLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 167 (172)
T ss_dssp EECCCCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC
T ss_pred eecccccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCC--ceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEE
Confidence 99999999999999999999999999999999999999999999 9999999999999999999999999999999998
Q ss_pred ecC
Q 019968 183 RKS 185 (333)
Q Consensus 183 r~~ 185 (333)
|+.
T Consensus 168 rlr 170 (172)
T 3u30_A 168 RLR 170 (172)
T ss_dssp ---
T ss_pred ecC
Confidence 864
No 2
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=2e-34 Score=249.48 Aligned_cols=151 Identities=20% Similarity=0.230 Sum_probs=144.7
Q ss_pred cEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE-E-CCeecccCCccccccccccccceeeeee-ccc
Q 019968 33 SILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV-F-EGRELARSNSRVRDYGLADGNVLHLVLR-LSD 108 (333)
Q Consensus 33 ~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li-f-~G~~L~~D~~tL~dygI~~gstV~Lv~r-lsd 108 (333)
.|+|+|+ ++|++++++|++++||.+||.+|+..+|+|+++|+|+ | +|+.|. |+.+|++|+|++|++|+|+++ +++
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~-d~~tL~~y~i~~~~~l~l~~~~~~~ 80 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQ-DRVPLASQGLGPGSTVLLVVDKSDE 80 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCC-TTSCGGGGTCCTTCEEEEEECCCCC
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCC-CCCCHHHcCCCCCCEEEEEccCCCC
Confidence 4899995 8999999999999999999999999999999999999 9 799997 999999999999999999999 689
Q ss_pred ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC
Q 019968 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (333)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~ 186 (333)
+|+|+|++.+|++++++|++++||++||++|++++|+| +++|+|+|+|+.|+|+.+|++|+|++|++|||++|+..
T Consensus 81 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~G 156 (159)
T 3rt3_B 81 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 156 (159)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCC--HHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999998653
No 3
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=3.5e-32 Score=231.90 Aligned_cols=149 Identities=34% Similarity=0.533 Sum_probs=144.7
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccccce
Q 019968 34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAI 112 (333)
Q Consensus 34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~m~I 112 (333)
|+|+|+ ++|+.+++++++++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|++|||++|++++++.+..++|+|
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~-d~~tL~~~~i~~~~~l~l~~~~~~~~~i 79 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGMQI 79 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCTTCEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECc-CcccHHHhccCCCCeeEEEeecccccce
Confidence 789995 78999999999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred eEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 113 TVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 113 ~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
+|++.+|+++.++|++++||++||.+|+++.|+| +++|+|+|+|+.|+|+.+|++|++++|++|||++|+.
T Consensus 80 ~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~--~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~ 150 (152)
T 3b08_A 80 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 150 (152)
T ss_dssp EEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred eeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcC--hhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 9999999999999999999999999999999999 9999999999999999999999999999999998864
No 4
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.94 E-value=8.5e-27 Score=201.51 Aligned_cols=139 Identities=19% Similarity=0.173 Sum_probs=123.6
Q ss_pred ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE-E-CCeecCCCCcccccCCCCCCEEEEEee-cC
Q 019968 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI-C-DGEELEDQRLITDICKRNEAVIHLLVR-KS 185 (333)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi-f-~Gk~LeD~~tL~dy~I~~gsvIhLv~r-~~ 185 (333)
.|+|+|++.+|++++++|++++||++||++|++.+|+| +++|+|+ | +|+.|+|+.+|++|+|.+|++|||+++ .+
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip--~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~ 79 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVH--AFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSD 79 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCC--GGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCC
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCC--HHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCC
Confidence 38899999999999999999999999999999999999 9999999 9 899999999999999999999999998 34
Q ss_pred C----ccccccCCceEEEEEeecccccc------CCCCCCCCceEEEeeceeccccccccccccce-----eeecccCCC
Q 019968 186 A----KVRAKPVQKDFEVSIEATELNEK------GADVVGEHQFETLFMGYQIRERKLLQNDLLLE-----PLIVESNFK 250 (333)
Q Consensus 186 ~----~v~t~~~gk~~~l~v~~~d~~~~------~~~gi~~~~q~Lif~Gk~L~d~~~l~~d~~i~-----~l~~~~~~~ 250 (333)
. .|++.. |++++++|.+++++.. .++|+|+++|+|+|+|+.|+|+++++ ||+|+ ||+++.+||
T Consensus 80 ~~m~i~vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~-~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 80 EPLSILVRNNK-GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLG-EYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp CCEEEEEECTT-SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGG-GGTCCTTCEEEEEECCC--
T ss_pred CcEEEEEECCC-CCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHH-HcCCCCCCEEEEEEecCCC
Confidence 3 345554 8999999999999653 35799999999999999999999999 99976 899999887
Q ss_pred C
Q 019968 251 L 251 (333)
Q Consensus 251 ~ 251 (333)
.
T Consensus 158 ~ 158 (159)
T 3rt3_B 158 G 158 (159)
T ss_dssp -
T ss_pred C
Confidence 4
No 5
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=203.43 Aligned_cols=139 Identities=25% Similarity=0.358 Sum_probs=122.8
Q ss_pred cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC-
Q 019968 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA- 186 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~- 186 (333)
..|+|+|++.+|++++++|++++||.+||++|++++|+| +++|+|+|+|+.|+|+.+|++|+|.++++|||+++...
T Consensus 19 ~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip--~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg 96 (172)
T 3u30_A 19 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 96 (172)
T ss_dssp CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--hHHEEEEECCccccccCCHhHcCCcccceeeeeeccccc
Confidence 469999999999999999999999999999999999999 99999999999999999999999999999999998764
Q ss_pred ---ccccccCCceEEEEEeecccccc------CCCCCCCCceEEEeeceeccccccccccccce-----eeecccCCC
Q 019968 187 ---KVRAKPVQKDFEVSIEATELNEK------GADVVGEHQFETLFMGYQIRERKLLQNDLLLE-----PLIVESNFK 250 (333)
Q Consensus 187 ---~v~t~~~gk~~~l~v~~~d~~~~------~~~gi~~~~q~Lif~Gk~L~d~~~l~~d~~i~-----~l~~~~~~~ 250 (333)
.|++.. |+++++.|.+++++.. .++|+|+++|+|+|+|++|+|+++|+ ||+|+ ||++|.+||
T Consensus 97 ~~i~Vk~~~-g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~-~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 97 MQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS-DYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEEEEEESS-CCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSG-GGTCCTTCEEEECC-----
T ss_pred ccceeeccc-CcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHH-HhCCCCCCEEEEEEecCCC
Confidence 355555 8999999999998643 34699999999999999999999999 99976 888888875
No 6
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.92 E-value=1.3e-24 Score=185.01 Aligned_cols=137 Identities=26% Similarity=0.367 Sum_probs=123.0
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC---
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA--- 186 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~--- 186 (333)
|+|+|++.+|++++++|++++||++||++|++..|+| +++|+|+|+|+.|+|+.+|++|++.+|++||++.+...
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip--~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~ 78 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQ 78 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcC--hHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccccc
Confidence 7899999999999999999999999999999999999 99999999999999999999999999999999998654
Q ss_pred -ccccccCCceEEEEEeecccccc------CCCCCCCCceEEEeeceeccccccccccccce-----eeecccCCC
Q 019968 187 -KVRAKPVQKDFEVSIEATELNEK------GADVVGEHQFETLFMGYQIRERKLLQNDLLLE-----PLIVESNFK 250 (333)
Q Consensus 187 -~v~t~~~gk~~~l~v~~~d~~~~------~~~gi~~~~q~Lif~Gk~L~d~~~l~~d~~i~-----~l~~~~~~~ 250 (333)
.|++.. |+.+++.+.+++++.. .+.|+|+++|+|+|+|+.|+|++++. ||.|. ||+++.+||
T Consensus 79 i~Vk~~~-g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~-~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 79 IFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS-DYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEEEESS-SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTG-GGTCCTTCEEEEEECCCC-
T ss_pred eeeeecC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHH-HcCCCCCCEEEEEEecCCC
Confidence 344444 8899999999888643 34699999999999999999999999 99975 888888875
No 7
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.78 E-value=6.5e-19 Score=137.63 Aligned_cols=88 Identities=25% Similarity=0.282 Sum_probs=72.2
Q ss_pred ccccccceeeeeecccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCC
Q 019968 93 GLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK 172 (333)
Q Consensus 93 gI~~gstV~Lv~rlsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I 172 (333)
|+.+++++++..+.+..|+|+|++.+|+++.++|++++||++||++|++++|+| +++|+|+|+|+.|+|+.+|++|+|
T Consensus 1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i 78 (88)
T 4eew_A 1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP--SEKQRLIYQGRVLQDDKKLQEYNV 78 (88)
T ss_dssp --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTC
T ss_pred CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCEECCCCCcHHHcCC
Confidence 456788999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCCEEEEEee
Q 019968 173 RNEAVIHLLVR 183 (333)
Q Consensus 173 ~~gsvIhLv~r 183 (333)
+|++|||++|
T Consensus 79 -~g~~i~lv~R 88 (88)
T 4eew_A 79 -GGKVIHLVER 88 (88)
T ss_dssp -TTEEEEEEEC
T ss_pred -CCcEEEEEEC
Confidence 8999999876
No 8
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.75 E-value=3.8e-18 Score=135.89 Aligned_cols=78 Identities=21% Similarity=0.181 Sum_probs=70.5
Q ss_pred eeeecccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 019968 102 LVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (333)
Q Consensus 102 Lv~rlsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv 181 (333)
|+...+..|+|+|++.+|++++++|++++||.+||++|++++|+| +++|||+|+|+.|+|..||+||+|++|++|||.
T Consensus 14 ~~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip--~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 14 LVPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQ--PNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp ------CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred ccCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCC--HHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 445566789999999999999999999999999999999999999 999999999999999999999999999999985
No 9
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.74 E-value=5.8e-18 Score=129.50 Aligned_cols=75 Identities=20% Similarity=0.171 Sum_probs=72.7
Q ss_pred cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~ 184 (333)
..|+|+|++.+|++++++|++++||++||++|++++|+| +++|+|+|+|+.|+|+.+|++|+|++|++|||++|+
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl 77 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL 77 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCC--HHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 569999999999999999999999999999999999999 999999999999999999999999999999999985
No 10
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=4.8e-19 Score=146.10 Aligned_cols=103 Identities=30% Similarity=0.488 Sum_probs=97.1
Q ss_pred CCcEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 31 ~~~M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
....+|+| +++|++++++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|+.++.++
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLE-DGRTLSDYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 34689999 589999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred cceeEe---eeCCcEEEEEEecCCchHH
Q 019968 110 QAITVT---TVCGKVFEFHVERGRNVGY 134 (333)
Q Consensus 110 m~I~Vk---t~~Gk~~~l~V~~sdTV~~ 134 (333)
++++++ +.+|++++++|++++||..
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 86 SMGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CCCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred ceeeccccccccCceEEEEeccccccCC
Confidence 999998 7789999999999999864
No 11
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.9e-17 Score=125.11 Aligned_cols=76 Identities=26% Similarity=0.253 Sum_probs=71.7
Q ss_pred cccceeEeeeCCcEE-EEE-EecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 108 DLQAITVTTVCGKVF-EFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~-~l~-V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
+.|+|+|++.+|+++ +++ |++++||++||++|++..|+| +++|+|+|+|+.|+|+.+|++|++++|++|||++|++
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip--~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVE--PGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcC--hhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 368999999999985 999 999999999999999999999 9999999999999999999999999999999999864
No 12
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.70 E-value=5.1e-17 Score=127.32 Aligned_cols=78 Identities=27% Similarity=0.296 Sum_probs=73.3
Q ss_pred ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC
Q 019968 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (333)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~ 186 (333)
+..|+|+|++.+|+++.++|++++||.+||++|++++|+| +++|+|+|+|+.|+|+.+|++|+| +|++|||+++.+.
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~ 79 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP--SEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPP 79 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCC
Confidence 3569999999999999999999999999999999999999 999999999999999999999999 8999999999765
Q ss_pred c
Q 019968 187 K 187 (333)
Q Consensus 187 ~ 187 (333)
.
T Consensus 80 ~ 80 (90)
T 4dwf_A 80 Q 80 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 13
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.70 E-value=3e-17 Score=128.21 Aligned_cols=75 Identities=24% Similarity=0.258 Sum_probs=71.8
Q ss_pred cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCee-cCCCCcccccCCCCCCEEEEEeec
Q 019968 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE-LEDQRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~-LeD~~tL~dy~I~~gsvIhLv~r~ 184 (333)
.-|+|+|++.+|++++++|++++||++||++|++++|+| +++|+|+|+|+. |+|+.+|++|+|++|++|+|++++
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIP--VSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcC--hHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 359999999999999999999999999999999999999 999999999999 999999999999999999998863
No 14
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.70 E-value=5.2e-17 Score=124.16 Aligned_cols=75 Identities=23% Similarity=0.360 Sum_probs=71.6
Q ss_pred CcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968 32 DSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (333)
Q Consensus 32 ~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls 107 (333)
..|+|+|+ ++|++++++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++|+.
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~l~l~~rl~ 78 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNLRLR 78 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCB
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEecC
Confidence 47999996 78999999999999999999999999999999999999999998 99999999999999999999875
No 15
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.70 E-value=4.2e-17 Score=128.00 Aligned_cols=75 Identities=25% Similarity=0.377 Sum_probs=71.9
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~ 186 (333)
|+|+|++.+|++++++|++++||++||++|++.+|+| +++|+|+|+|+.|+|+.+|++|+|++|++|+|++|+..
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~G 75 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG 75 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC-
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC--hhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCC
Confidence 7899999999999999999999999999999999999 99999999999999999999999999999999999653
No 16
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.69 E-value=5.6e-17 Score=129.42 Aligned_cols=91 Identities=31% Similarity=0.504 Sum_probs=72.5
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccccce
Q 019968 34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAI 112 (333)
Q Consensus 34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~m~I 112 (333)
|+|+|+ .+|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+.+..++.++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~~~~gG~~i 79 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGRDP 79 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCCCC---
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEeCCCCCcC
Confidence 899995 68999999999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred eEeeeCCcEEEEE
Q 019968 113 TVTTVCGKVFEFH 125 (333)
Q Consensus 113 ~Vkt~~Gk~~~l~ 125 (333)
+.+|.+|+.-.++
T Consensus 80 ~~~~v~~~~~~~~ 92 (98)
T 1yx5_B 80 NSSSVDKLAAALE 92 (98)
T ss_dssp -------------
T ss_pred ccccCCCchhhhh
Confidence 9999998765554
No 17
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=3.7e-17 Score=128.89 Aligned_cols=74 Identities=14% Similarity=0.324 Sum_probs=70.3
Q ss_pred cceeEeeeCCcEEEEEEe--cCCchHHHHHHH-HHhcCCCCCCCceEEEECCeecCCCCcccccCC-CCCCEEEEEeecC
Q 019968 110 QAITVTTVCGKVFEFHVE--RGRNVGYVKQQI-AKKGREFVDLKNQELICDGEELEDQRLITDICK-RNEAVIHLLVRKS 185 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~--~sdTV~~LK~~I-~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I-~~gsvIhLv~r~~ 185 (333)
|+|+||+.+|++++++|+ +++||.+||++| +++.|+| +++|||+|+|+.|+|+.+|++|+| ++|++|+|+.++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~ 79 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASH--ISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 79 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSS--STTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCC--hHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence 899999999999999877 999999999999 9999999 999999999999999999999999 7999999998864
No 18
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.68 E-value=8.9e-17 Score=126.58 Aligned_cols=76 Identities=30% Similarity=0.406 Sum_probs=72.9
Q ss_pred ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~ 184 (333)
...|+|+|++.+|+++.++|++++||.+||++|++.+|+| +++|+|+|+|+.|+|+.+|++|||++|++|||++|+
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC--hhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 3469999999999999999999999999999999999999 999999999999999999999999999999999885
No 19
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.68 E-value=9.8e-17 Score=124.61 Aligned_cols=82 Identities=29% Similarity=0.520 Sum_probs=75.9
Q ss_pred CCCCCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeee
Q 019968 27 EKLSNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (333)
Q Consensus 27 ~~~~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~r 105 (333)
++.+..+|+|+|+ ++|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|.+|+|++|++|+|+++
T Consensus 6 ~~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~i~l~~r 84 (88)
T 3dbh_I 6 SVGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVLR 84 (88)
T ss_dssp CSSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECC-TTSBGGGGTCCTTCEEEECCC
T ss_pred CCCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEEe
Confidence 3445678999996 79999999999999999999999999999999999999999998 999999999999999999998
Q ss_pred cccc
Q 019968 106 LSDL 109 (333)
Q Consensus 106 lsd~ 109 (333)
+.++
T Consensus 85 l~GG 88 (88)
T 3dbh_I 85 LRGG 88 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 20
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=5.6e-17 Score=131.05 Aligned_cols=72 Identities=14% Similarity=0.096 Sum_probs=69.6
Q ss_pred ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (333)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~ 182 (333)
.|+|+|++.+|++++++|++++||.+||++|++++|+| +++|||+|+|+.|+|+.+|++|+|+++++|||+.
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip--~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTR--WNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCC--GGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC--HHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 49999999999999999999999999999999999999 9999999999999999999999999999999964
No 21
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.68 E-value=9.3e-17 Score=122.74 Aligned_cols=75 Identities=12% Similarity=0.232 Sum_probs=72.0
Q ss_pred ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
.|+|+|++.+|+++.++|++++||.+||++|+++.|+| +++|+|+|+|+.|+|+.|+++|++++|++||+++++.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~--~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~ 77 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP--MNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 77 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCC--cccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEecc
Confidence 48899999999999999999999999999999999999 9999999999999999999999999999999998853
No 22
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.68 E-value=1.3e-16 Score=128.50 Aligned_cols=77 Identities=13% Similarity=0.308 Sum_probs=70.6
Q ss_pred ccccceeEeeeCCcEEEE--EEecCCchHHHHHHH-HHhcCCCCCCCceEEEECCeecCCCCcccccCC-CCCCEEEEEe
Q 019968 107 SDLQAITVTTVCGKVFEF--HVERGRNVGYVKQQI-AKKGREFVDLKNQELICDGEELEDQRLITDICK-RNEAVIHLLV 182 (333)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l--~V~~sdTV~~LK~~I-~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I-~~gsvIhLv~ 182 (333)
...|+|+|++.+|++|++ +|++++||++||++| ++..|+| +++|||+|+|+.|+|+.+|++|+| ++|++|||++
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip--~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASH--ISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMI 94 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSC--GGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCC--hhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEE
Confidence 457999999999998877 455999999999999 8888999 999999999999999999999999 9999999998
Q ss_pred ecC
Q 019968 183 RKS 185 (333)
Q Consensus 183 r~~ 185 (333)
+++
T Consensus 95 skp 97 (98)
T 4a20_A 95 KPN 97 (98)
T ss_dssp CCC
T ss_pred eCC
Confidence 864
No 23
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.67 E-value=1e-16 Score=127.57 Aligned_cols=73 Identities=21% Similarity=0.240 Sum_probs=68.8
Q ss_pred CCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeee
Q 019968 30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (333)
Q Consensus 30 ~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv 103 (333)
....|+|+|+ +.|+++.++++|+|||.+||++|+++.|+|+++|+|+|+|++|+ |+.+|++|+|++|++|+|.
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~Lk-D~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLK-DHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEE
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEcc-CcCCHHHcCCCCCCEEEEE
Confidence 4678999996 89999999999999999999999999999999999999999998 9999999999999999986
No 24
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.67 E-value=1.6e-16 Score=125.11 Aligned_cols=79 Identities=35% Similarity=0.618 Sum_probs=74.0
Q ss_pred CCCCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 28 KLSNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 28 ~~~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
+.+...|+|+|+ ++|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|.+|||++|++|+|++|+
T Consensus 12 ~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 12 LVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp CCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTCBTGGGTCCTTCEEEEECCC
T ss_pred CCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECC-CcCcHHHCCCCCCCEEEEEEec
Confidence 345779999996 79999999999999999999999999999999999999999998 9999999999999999999886
Q ss_pred c
Q 019968 107 S 107 (333)
Q Consensus 107 s 107 (333)
+
T Consensus 91 r 91 (91)
T 3v6c_B 91 R 91 (91)
T ss_dssp C
T ss_pred C
Confidence 3
No 25
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.67 E-value=2.2e-16 Score=122.05 Aligned_cols=77 Identities=23% Similarity=0.302 Sum_probs=71.4
Q ss_pred ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHh---cCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEee
Q 019968 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKK---GREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (333)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~---~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r 183 (333)
+..|+|+|++.+|+++.++|++++||++||++|++. +|+| +++|+|+|+|+.|+|+.+|++|+|++|++||++.+
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~ 80 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT 80 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCC--GGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCC--HHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEc
Confidence 457999999999999999999999999999999997 8999 99999999999999999999999999999999987
Q ss_pred cC
Q 019968 184 KS 185 (333)
Q Consensus 184 ~~ 185 (333)
++
T Consensus 81 ~~ 82 (85)
T 2wyq_A 81 KT 82 (85)
T ss_dssp --
T ss_pred CC
Confidence 54
No 26
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=2e-16 Score=131.16 Aligned_cols=80 Identities=18% Similarity=0.254 Sum_probs=71.6
Q ss_pred cccccceeEeeeCCcEEEEEEecCCchHHHHHHHHH------hcCCCCCCCceEEEECCeecCCCCcccccCCCCC--CE
Q 019968 106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAK------KGREFVDLKNQELICDGEELEDQRLITDICKRNE--AV 177 (333)
Q Consensus 106 lsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~------~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~g--sv 177 (333)
+.+.|+|+|+|.+|++++++|++++||++||++|++ ++|+|.++++|||+|+|+.|+|+.||++|+|+.+ ++
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~t 92 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 92 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 456799999999999999999999999999999999 6675333999999999999999999999999766 68
Q ss_pred EEEEeecC
Q 019968 178 IHLLVRKS 185 (333)
Q Consensus 178 IhLv~r~~ 185 (333)
+||++|..
T Consensus 93 lhLvlr~~ 100 (116)
T 1wgh_A 93 MHLVARET 100 (116)
T ss_dssp EEEEECSS
T ss_pred EEEEccCC
Confidence 99999864
No 27
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.67 E-value=1.5e-16 Score=127.26 Aligned_cols=78 Identities=12% Similarity=0.224 Sum_probs=73.6
Q ss_pred cccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 106 lsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
.+..|+|+|++.+|+++.++|.+++||.+||++|+++.|+| +++|+|+|+|+.|+|+.||++|+|+++++|||++++.
T Consensus 18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip--~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~ 95 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP--MNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 95 (97)
T ss_dssp -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSS
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--hhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecC
Confidence 34569999999999999999999999999999999999999 9999999999999999999999999999999998853
No 28
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.67 E-value=1.3e-16 Score=123.88 Aligned_cols=77 Identities=26% Similarity=0.381 Sum_probs=73.3
Q ss_pred ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
...|+|+|++.+|+++.++|++++||.+||++|++..|+| +++|+|+|+|+.|+|+.+|++|+|+++++|||++|+.
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~ 86 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLR 86 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC--HHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 3469999999999999999999999999999999999999 9999999999999999999999999999999998864
No 29
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.66 E-value=2.5e-16 Score=118.40 Aligned_cols=74 Identities=26% Similarity=0.380 Sum_probs=71.2
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
|+|+|++.+|+++.++|++++||++||++|++..|+| ++.|+|+|+|+.|+|+.+|++|++++|++||++++..
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR 74 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcC--hHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 7899999999999999999999999999999999999 9999999999999999999999999999999998853
No 30
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=124.75 Aligned_cols=76 Identities=20% Similarity=0.168 Sum_probs=71.7
Q ss_pred cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
..|+|+|++.+|++++++|++++||++||++|++.+|+| +++|+|+|+|+.|+|+.+|++|+|++|++|+|+.++.
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~ 78 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSC--TTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC--
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCC--hhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcC
Confidence 468999999999999999999999999999999999999 9999999999999999999999999999999998864
No 31
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=5e-17 Score=134.00 Aligned_cols=99 Identities=27% Similarity=0.366 Sum_probs=86.8
Q ss_pred cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCCc
Q 019968 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAK 187 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~~ 187 (333)
+..+|+|++.+|+++.++|++++||++||++|++..|+| +++|+|+|+|+.|+|+.+|++|+|+++++|+|+.++...
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcC--hHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 457899999999999999999999999999999999999 999999999999999999999999999999999996532
Q ss_pred --ccccc----CCceEEEEEeeccccc
Q 019968 188 --VRAKP----VQKDFEVSIEATELNE 208 (333)
Q Consensus 188 --v~t~~----~gk~~~l~v~~~d~~~ 208 (333)
+..+. .|++++++|+++++.+
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~ 112 (114)
T 2kdi_A 86 SMGGAADEEELIRKAIELSLKESRNSG 112 (114)
T ss_dssp CCCSSCSSSHHHHHHHHSSSHHHHHGG
T ss_pred ceeeccccccccCceEEEEeccccccC
Confidence 22221 2788888888887753
No 32
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.1e-16 Score=119.12 Aligned_cols=77 Identities=22% Similarity=0.434 Sum_probs=72.6
Q ss_pred CCCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 29 LSNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 29 ~~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
.+...|+|+|+ .+|+.+.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|||++|++|++++++
T Consensus 3 ~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 3 SGSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALA-DGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp CSSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECC-TTSBGGGGTCCSSBCCEEECCC
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEEeC
Confidence 45778999995 78999999999999999999999999999999999999999998 9999999999999999999876
No 33
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.6e-16 Score=129.27 Aligned_cols=75 Identities=13% Similarity=0.192 Sum_probs=70.6
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~ 186 (333)
|+|+|++.+|+++.++|++++||.+||++|++.+|+| +++|+|+|+|+.|+|+.+|++|||++|++|||+++++.
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~ 76 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCE--ESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKK 76 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSC--GGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--hhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCC
Confidence 7899999999999999999999999999999999999 99999999999999999999999999999999998654
No 34
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.66 E-value=1.9e-16 Score=124.20 Aligned_cols=76 Identities=28% Similarity=0.538 Sum_probs=70.8
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccccc
Q 019968 34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ 110 (333)
Q Consensus 34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~m 110 (333)
|+|+|+ ++|++++++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++++.++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 789995 89999999999999999999999999999999999999999998 99999999999999999999988765
No 35
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.66 E-value=5.3e-17 Score=131.06 Aligned_cols=94 Identities=20% Similarity=0.264 Sum_probs=68.4
Q ss_pred CccccccccccccceeeeeecccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCC
Q 019968 86 NSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQR 165 (333)
Q Consensus 86 ~~tL~dygI~~gstV~Lv~rlsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~ 165 (333)
...+++|.| +++.++.++..-.+.|+|++ +|+++.++|++++||++||++|++++|+| +++|+|+|+|+.|+|+.
T Consensus 7 ~~~~~~~~~--~~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~ 81 (101)
T 3m63_B 7 HHPMSDYDI--PTTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP--VANQRLIYSGKILKDDQ 81 (101)
T ss_dssp ------------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCC--STTCCEEETTEECCTTS
T ss_pred cCCccccCC--CcceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcC--hHHEEEEECCEECCCcC
Confidence 356788987 56666666665567788887 89999999999999999999999999999 99999999999999999
Q ss_pred cccccCCCCCCEEEEEeec
Q 019968 166 LITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 166 tL~dy~I~~gsvIhLv~r~ 184 (333)
+|++|||++|++|+|+.+.
T Consensus 82 tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 82 TVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp BTTTTTCCTTEEEEECCCC
T ss_pred cHHHCCCCCCCEEEEEeCC
Confidence 9999999999999998764
No 36
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.65 E-value=3.3e-16 Score=123.94 Aligned_cols=76 Identities=32% Similarity=0.418 Sum_probs=72.5
Q ss_pred ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC
Q 019968 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (333)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~ 186 (333)
+|+|+|++.+|+++.++|++++||.+||++|++.+|+| ++.|+|+|+|+.|+|+.+|++|+|.+|++|||+++...
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~g 76 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 76 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC--hhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCC
Confidence 58999999999999999999999999999999999999 99999999999999999999999999999999998654
No 37
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=2.8e-16 Score=123.29 Aligned_cols=76 Identities=28% Similarity=0.414 Sum_probs=70.0
Q ss_pred cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
.+|+|+|++.+|+++.++|++++||++||++|++..|+| ++.|+|+|+|+.|+|+.+|++|++++|++|+|+++..
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~ 83 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 83 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC---
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcC--hhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 479999999999999999999999999999999999999 9999999999999999999999999999999998854
No 38
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=5.7e-16 Score=123.17 Aligned_cols=75 Identities=19% Similarity=0.310 Sum_probs=71.5
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHh---cCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKK---GREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~---~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~ 186 (333)
|+|+|++.+|+.+.++|++++||++||++|++. +|+| +++|+|+|+|+.|+|+.+|++|+|++|++|+|+++++.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFP--VAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCC--TTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCC--hhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCC
Confidence 789999999999999999999999999999999 8899 99999999999999999999999999999999988643
No 39
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.7e-16 Score=119.37 Aligned_cols=76 Identities=22% Similarity=0.327 Sum_probs=72.4
Q ss_pred ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~ 184 (333)
+..|+|+|++.+|+++.++|++++||++||++|++..|+| ++.|+|+|+|+.|+|+.+|++|++++|++||+++++
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVP--VRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCC--TTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--HHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 3469999999999999999999999999999999999999 999999999999999999999999999999999875
No 40
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.6e-16 Score=125.89 Aligned_cols=81 Identities=33% Similarity=0.573 Sum_probs=72.7
Q ss_pred CCCCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 28 KLSNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 28 ~~~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
+..+..|+|+|+ ++|+.+.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|++|+
T Consensus 17 ~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~i~l~~rl 95 (98)
T 4hcn_B 17 YFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRL 95 (98)
T ss_dssp -----CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTCBSGGGTCCTTEEEEEECBC
T ss_pred CCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEec
Confidence 345778999996 79999999999999999999999999999999999999999998 9999999999999999999988
Q ss_pred ccc
Q 019968 107 SDL 109 (333)
Q Consensus 107 sd~ 109 (333)
.++
T Consensus 96 ~GG 98 (98)
T 4hcn_B 96 RGG 98 (98)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 41
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.65 E-value=3e-16 Score=131.69 Aligned_cols=79 Identities=16% Similarity=0.247 Sum_probs=71.6
Q ss_pred ccccceeEeeeCCcEE-EEEEecCCchHHHHHHH-----HHhcCCCCCCCceEEEECCeecCCCCcccccCCCCC-----
Q 019968 107 SDLQAITVTTVCGKVF-EFHVERGRNVGYVKQQI-----AKKGREFVDLKNQELICDGEELEDQRLITDICKRNE----- 175 (333)
Q Consensus 107 sd~m~I~Vkt~~Gk~~-~l~V~~sdTV~~LK~~I-----~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~g----- 175 (333)
.+.|+|.|+|.+|+.+ ++++++++||++||++| ++++|+|+++++|||+|+|+.|+|++||++|+|+++
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~ 93 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 93 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence 4789999999999988 79999999999999999 567788844489999999999999999999999998
Q ss_pred -CEEEEEeecC
Q 019968 176 -AVIHLLVRKS 185 (333)
Q Consensus 176 -svIhLv~r~~ 185 (333)
+++||++++.
T Consensus 94 v~tmhlVlrl~ 104 (126)
T 1se9_A 94 VTTMHVIIQAP 104 (126)
T ss_dssp CEEEEEEECCC
T ss_pred cEEEEEEeccC
Confidence 6899999865
No 42
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.65 E-value=2.7e-16 Score=122.74 Aligned_cols=74 Identities=20% Similarity=0.296 Sum_probs=70.3
Q ss_pred CcEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCee-cccCCccccccccccccceeeeeec
Q 019968 32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE-LARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 32 ~~M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~-L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
.-|+|+| ++.|++++++|++++||.+||.+|++.+|+|+++|+|+|+|+. |+ |+.+|++|+|++|++|+|++++
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~-D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILR-EDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCC-SSSBHHHHTCCTTSCEEEEECC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecC-CcCCHHHcCCCCCCEEEEEEcC
Confidence 3699999 5899999999999999999999999999999999999999999 97 9999999999999999998764
No 43
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=4.7e-16 Score=120.78 Aligned_cols=77 Identities=19% Similarity=0.139 Sum_probs=73.5
Q ss_pred ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
+..|+|+|++.+|+++.++|++++||.+||++|++..|+| +++|+|+|+|+.|+|+.+|++|+|+++++|||++++.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~--~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLP--KKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKG 81 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCC--TTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSC
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCC--hHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEecc
Confidence 3569999999999999999999999999999999999999 9999999999999999999999999999999999864
No 44
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=3.3e-16 Score=120.66 Aligned_cols=75 Identities=29% Similarity=0.385 Sum_probs=71.8
Q ss_pred ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
.|+|+|++.+|++++++|++++||.+||++|++.+++| +++|+|+|+|+.|+|+.+|++|+|+++++||+++|+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip--~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~ 77 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLR 77 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--HHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEecc
Confidence 58999999999999999999999999999999999999 9999999999999999999999999999999999864
No 45
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.65 E-value=5.6e-16 Score=116.47 Aligned_cols=74 Identities=32% Similarity=0.445 Sum_probs=71.2
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
|+|+|++.+|+++.++|++++||.+||++|++..|+| ++.|+|+|+|+.|+|+.+|++|++.+|++||+++++.
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLR 74 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 7899999999999999999999999999999999999 9999999999999999999999999999999998854
No 46
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.6e-16 Score=125.03 Aligned_cols=77 Identities=31% Similarity=0.429 Sum_probs=72.5
Q ss_pred ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
...|+|+|++.+|+++.++|++++||.+||++|++.+|+| +++|+|+|+|+.|+|+.+|++|+|++|++|||++|+.
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~ 96 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 96 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCS
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCC--hhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 3469999999999999999999999999999999999999 9999999999999999999999999999999999864
No 47
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.64 E-value=4.7e-16 Score=128.87 Aligned_cols=75 Identities=15% Similarity=0.084 Sum_probs=70.0
Q ss_pred cceeEeeeCCc-EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCC-------CCEEEEE
Q 019968 110 QAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRN-------EAVIHLL 181 (333)
Q Consensus 110 m~I~Vkt~~Gk-~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~-------gsvIhLv 181 (333)
|.+|++...++ ++.++|++++||.+||++|+.++|+| +++|||+|+|+.|+|++||++|||++ +++|||+
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giP--p~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lv 78 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRP--PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCC--HHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEE
Confidence 66888887777 78899999999999999999999999 99999999999999999999999999 9999999
Q ss_pred eecCC
Q 019968 182 VRKSA 186 (333)
Q Consensus 182 ~r~~~ 186 (333)
+|...
T Consensus 79 lr~~~ 83 (118)
T 4ajy_B 79 FRADD 83 (118)
T ss_dssp ECCSS
T ss_pred EecCC
Confidence 99743
No 48
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=8.1e-16 Score=120.05 Aligned_cols=76 Identities=24% Similarity=0.232 Sum_probs=72.1
Q ss_pred cccceeEeeeCC-cEEEE-EEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 108 DLQAITVTTVCG-KVFEF-HVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 108 d~m~I~Vkt~~G-k~~~l-~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
..|+|+|++.+| +++.+ +|++++||.+||++|++..|+| +++|+|+|+|+.|+|+.+|++|+|.++++|||+++..
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 83 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVR--PECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPD 83 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCC--TTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCC
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcC--hhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCC
Confidence 469999999999 79999 5999999999999999999999 9999999999999999999999999999999999864
No 49
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.64 E-value=6.7e-16 Score=122.96 Aligned_cols=76 Identities=21% Similarity=0.237 Sum_probs=72.1
Q ss_pred ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCC-CcccccCCCCCCEEEEEeecC
Q 019968 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ-RLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~-~tL~dy~I~~gsvIhLv~r~~ 185 (333)
...|+|+|++.+| +++++|++++||++||++|++++|+| +++|+|+|+|+.|+|+ .+|++|+|++|++|+|++++.
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~ 89 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTP--IKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSI 89 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSC--TTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCC
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcC--HHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCC
Confidence 4579999999888 89999999999999999999999999 9999999999999999 999999999999999999864
No 50
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.64 E-value=3.7e-16 Score=129.67 Aligned_cols=73 Identities=15% Similarity=0.083 Sum_probs=68.1
Q ss_pred cceeEeeeCCc-EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCC-------CCCEEEEE
Q 019968 110 QAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKR-------NEAVIHLL 181 (333)
Q Consensus 110 m~I~Vkt~~Gk-~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~-------~gsvIhLv 181 (333)
|+++|+...|+ +++++|++++||++||++|+.++|+| +++|||+|+|+.|+|++||++|||+ ++++|||+
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP--~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~ 78 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRP--PEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCC--HHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEE
Confidence 67778777776 58999999999999999999999999 9999999999999999999999999 79999999
Q ss_pred eec
Q 019968 182 VRK 184 (333)
Q Consensus 182 ~r~ 184 (333)
+|.
T Consensus 79 lr~ 81 (118)
T 2fnj_B 79 FRA 81 (118)
T ss_dssp EBS
T ss_pred ecC
Confidence 994
No 51
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=6.5e-16 Score=118.86 Aligned_cols=75 Identities=31% Similarity=0.380 Sum_probs=72.3
Q ss_pred ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
.|+|+|++.+|+++.++|++++||.+||++|++..++| ++.|+|+|+|+.|+|+.+|++|+|+++++|||++|+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~--~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~ 77 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLR 77 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCC
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC--hHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECc
Confidence 58999999999999999999999999999999999999 9999999999999999999999999999999999864
No 52
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=6.8e-16 Score=117.48 Aligned_cols=74 Identities=18% Similarity=0.323 Sum_probs=69.5
Q ss_pred cEEEEEE-eCCeEE-EEE-ecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968 33 SILIFLS-VGGSVI-PMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (333)
Q Consensus 33 ~M~I~Vt-~~G~~~-~i~-V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls 107 (333)
.|+|+|+ ++|+++ +++ +++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|||++|++|||++|++
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~-d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQME-DGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTTTTTCCTTCEEEEEECCC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEeCC
Confidence 6999995 678885 999 99999999999999999999999999999999998 99999999999999999998863
No 53
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.63 E-value=8.2e-16 Score=120.40 Aligned_cols=76 Identities=24% Similarity=0.430 Sum_probs=71.6
Q ss_pred CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
...|+|+|+ ++|+++.++|++++||.+||.+|+.++|+|+++|+|+|+|+.|+ |+.+|.+|+| +|++|||+++.+.
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~-d~~tL~~~~i-~g~~i~l~~~~~~ 79 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ-DDKKLQEYNV-GGKVIHLVERAPP 79 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTC-TTEEEEEEECCCC
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECC-CCCCHHHcCC-CCcEEEEEecCCC
Confidence 358999995 78999999999999999999999999999999999999999998 9999999999 8999999998765
No 54
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.63 E-value=1e-15 Score=115.73 Aligned_cols=72 Identities=22% Similarity=0.287 Sum_probs=69.0
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~ 184 (333)
|+|+|++ +|++++++|++++||++||++|++..|+| ++.|+|+|+|+.|+|+.+|++|++++|++||++.+.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP--VANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCC--HHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 8899999 99999999999999999999999999999 999999999999999999999999999999998764
No 55
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=9.3e-16 Score=119.73 Aligned_cols=79 Identities=16% Similarity=0.336 Sum_probs=73.7
Q ss_pred CCCcEEEEEE-eCC-eEEEE-EecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 30 SNDSILIFLS-VGG-SVIPM-RVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 30 ~~~~M~I~Vt-~~G-~~~~i-~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
+...|+|+|+ +.| +++.+ +|++++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|||++++
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~~~ 82 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLE-NGYTLFDYDVGLNDIIQLLVRP 82 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECC-SSSBHHHHTCCTTCEEEEEECC
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECC-CCCCHHHCCCCCCCEEEEEEeC
Confidence 4678999995 678 79999 599999999999999999999999999999999998 9999999999999999999988
Q ss_pred ccc
Q 019968 107 SDL 109 (333)
Q Consensus 107 sd~ 109 (333)
.++
T Consensus 83 ~gG 85 (89)
T 1wy8_A 83 DSG 85 (89)
T ss_dssp CCS
T ss_pred CCC
Confidence 765
No 56
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.63 E-value=1e-15 Score=119.40 Aligned_cols=73 Identities=25% Similarity=0.454 Sum_probs=69.1
Q ss_pred CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeee
Q 019968 31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (333)
Q Consensus 31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~r 105 (333)
...|+|+|+ ++|+++.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|+ |+.+|++||| +|++|||++|
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ-DDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTC-TTEEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECC-CCCcHHHcCC-CCcEEEEEEC
Confidence 457999995 68999999999999999999999999999999999999999998 9999999999 8999999875
No 57
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.63 E-value=5.4e-16 Score=118.48 Aligned_cols=77 Identities=17% Similarity=0.295 Sum_probs=72.0
Q ss_pred CcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968 32 DSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 32 ~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
+.|+|+|+ .+|+.+.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.++++|+|++|++|+++++..++
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~-d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeC-CCCCHHHcCCCCCCEEEEEEeccCC
Confidence 36999995 78999999999999999999999999999999999999999998 9999999999999999999987653
No 58
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.62 E-value=7.5e-16 Score=115.78 Aligned_cols=75 Identities=28% Similarity=0.550 Sum_probs=69.9
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968 34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
|+|+|+ .+|+++.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|||++|++|++.+++.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 789996 68999999999999999999999999999999999999999998 9999999999999999999987653
No 59
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=1.2e-15 Score=118.42 Aligned_cols=78 Identities=23% Similarity=0.340 Sum_probs=73.7
Q ss_pred CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968 31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
...|+|+|+ ++|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|++++.++
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~-d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQ-DWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECC-SSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEcc-CCCCHHHCCCCCCCEEEEEEeccCC
Confidence 458999995 68999999999999999999999999999999999999999998 9999999999999999999998765
No 60
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.62 E-value=1.5e-15 Score=120.91 Aligned_cols=82 Identities=17% Similarity=0.305 Sum_probs=74.5
Q ss_pred CCCCCCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCC-ccccccccccccceeee
Q 019968 26 PEKLSNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSN-SRVRDYGLADGNVLHLV 103 (333)
Q Consensus 26 ~~~~~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~-~tL~dygI~~gstV~Lv 103 (333)
.+..+...|+|+|+ ..| +++++|++++||.+||.+|+..+|+|+++|+|+|+|+.|+ |+ .+|++|+|++|++|+|+
T Consensus 8 ~~~~~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~~tL~~ygI~~gstl~lv 85 (94)
T 2kan_A 8 HSHAAVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELA-DDYRNLNEYGITEFSEIVVF 85 (94)
T ss_dssp CSCSSSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEEC-CTTSBHHHHTCCTTEEEEEE
T ss_pred ccccCCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECC-CCcccHHHCCCCCCCEEEEE
Confidence 34556778999997 555 8999999999999999999999999999999999999998 88 99999999999999999
Q ss_pred eecccc
Q 019968 104 LRLSDL 109 (333)
Q Consensus 104 ~rlsd~ 109 (333)
+++.++
T Consensus 86 ~r~~gg 91 (94)
T 2kan_A 86 LKSINR 91 (94)
T ss_dssp ECCCSS
T ss_pred EeCCCC
Confidence 988764
No 61
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=2.9e-16 Score=127.99 Aligned_cols=79 Identities=20% Similarity=0.234 Sum_probs=72.5
Q ss_pred ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCC---------------CceEEEECCeecC-CCCcccccCC
Q 019968 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDL---------------KNQELICDGEELE-DQRLITDICK 172 (333)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~---------------~~QrLif~Gk~Le-D~~tL~dy~I 172 (333)
.|+|+|++++|++++++|++++||++||++|++++++| + ++|+|+|+|+.|. |+.+|++|||
T Consensus 7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~--~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLK--QEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHH--HHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCC--cccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 49999999999999999999999999999999999988 6 4679999999995 6799999999
Q ss_pred CCCCEEEEEeecCCccc
Q 019968 173 RNEAVIHLLVRKSAKVR 189 (333)
Q Consensus 173 ~~gsvIhLv~r~~~~v~ 189 (333)
++|++|||+.++..+-+
T Consensus 85 ~~g~~l~lv~~lr~~~~ 101 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQKSG 101 (105)
T ss_dssp CSSEEEEEEECSCSCCC
T ss_pred CCCCEEEEEehhccCCC
Confidence 99999999999876543
No 62
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.62 E-value=2.3e-15 Score=132.17 Aligned_cols=74 Identities=32% Similarity=0.456 Sum_probs=72.0
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
|+|+|++.+|++++++|++++||.+||++|++++|+| +++|+|+|+|+.|+|+.+|++|+|++|++|||++|+.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~ 74 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC--TTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcC--HHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEec
Confidence 7899999999999999999999999999999999999 9999999999999999999999999999999999965
No 63
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.62 E-value=6.3e-16 Score=121.16 Aligned_cols=77 Identities=22% Similarity=0.333 Sum_probs=69.9
Q ss_pred CcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968 32 DSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 32 ~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
..|+|+|+ ++|++++++|++++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|+.++.++
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCC-TTSBHHHHHCSTTCEEEEEEC----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 47999995 68999999999999999999999999999999999999999998 9999999999999999999887654
No 64
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.61 E-value=8.3e-16 Score=124.15 Aligned_cols=74 Identities=20% Similarity=0.181 Sum_probs=69.3
Q ss_pred CCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968 30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 30 ~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
....|+|+|+ +.|++++++|++++||.+||.+|+++.|+|+++|+|+|+|++|. |+.+|.+|+|++|++|+|..
T Consensus 25 ~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~-D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 25 AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFK-DHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp CCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECC-SSCBHHHHTCCTTEEEEEEC
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECC-CCCCHHHcCCCCCCEEEEEe
Confidence 3456999995 78999999999999999999999999999999999999999998 99999999999999999864
No 65
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=1.3e-15 Score=117.11 Aligned_cols=77 Identities=32% Similarity=0.557 Sum_probs=72.3
Q ss_pred CcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968 32 DSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 32 ~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
.+|+|+|+ ++|+++.+++++++||.+||.+|++.+++|+++|+|+|+|+.|. |+.+|++|+|++|++|+|++++.++
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~-d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEECcCC
Confidence 37999996 78999999999999999999999999999999999999999998 9999999999999999999988654
No 66
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.61 E-value=9.4e-16 Score=121.63 Aligned_cols=75 Identities=16% Similarity=0.175 Sum_probs=69.5
Q ss_pred ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
...|+|+|++ |+++.++|++++||++||++|+++.|+| +++|+|+|+|+.|+|+.+|++|+|+++++|||++|+.
T Consensus 17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~ 91 (93)
T 2l7r_A 17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIA--PEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRML 91 (93)
T ss_dssp ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCC--GGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCC
T ss_pred CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcC--hhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 4569999998 8999999999999999999999999999 9999999999999999999999999999999998864
No 67
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.61 E-value=9.2e-16 Score=128.69 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=71.2
Q ss_pred ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHH------hcCCCCCCCceEEEECCeecCCCCcccccCCCCCC--EE
Q 019968 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAK------KGREFVDLKNQELICDGEELEDQRLITDICKRNEA--VI 178 (333)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~------~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gs--vI 178 (333)
...|.|+|+|.+|++++++|++++||++||++|++ ++|+|.++++|||+|+|+.|+|+.||++|+|+.++ ++
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 34588999999999999999999999999999999 77885448999999999999999999999999776 78
Q ss_pred EEEeecC
Q 019968 179 HLLVRKS 185 (333)
Q Consensus 179 hLv~r~~ 185 (333)
||++|..
T Consensus 95 hlv~r~~ 101 (125)
T 2gow_A 95 HLVARET 101 (125)
T ss_dssp EEEECSC
T ss_pred EEEecCC
Confidence 9999865
No 68
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=1.1e-15 Score=123.95 Aligned_cols=76 Identities=14% Similarity=0.160 Sum_probs=72.8
Q ss_pred cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
..|+|+|++.+|+++.++|++++||.+||.+|+++.|+| +++|+|+|+|+.|+|+.+|++|+|++|++|||+.+.+
T Consensus 22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVE--PGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP 97 (106)
T ss_dssp CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCC--STTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcC--cccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 459999999999999999999999999999999999999 9999999999999999999999999999999999864
No 69
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.61 E-value=1.6e-15 Score=113.94 Aligned_cols=75 Identities=36% Similarity=0.615 Sum_probs=70.8
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968 34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
|+|+|+ .+|+.+.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|++.+++.++
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 789995 68999999999999999999999999999999999999999998 8999999999999999999987653
No 70
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=8.3e-16 Score=118.44 Aligned_cols=77 Identities=30% Similarity=0.500 Sum_probs=70.5
Q ss_pred CcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968 32 DSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 32 ~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
.+|+|+|+ .+|+++++++++++||.+||.+|++.+++|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++.++
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~-d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECC-TTCBTTTTTCCTTCEEEEEECCC--
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECC-CCCCHHHCCCCCCCEEEEEEeccCC
Confidence 37999996 78999999999999999999999999999999999999999998 9999999999999999999988654
No 71
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.61 E-value=2.5e-15 Score=122.89 Aligned_cols=91 Identities=30% Similarity=0.383 Sum_probs=81.0
Q ss_pred ccccccceeeeeec--------ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCC
Q 019968 93 GLADGNVLHLVLRL--------SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ 164 (333)
Q Consensus 93 gI~~gstV~Lv~rl--------sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~ 164 (333)
++.+|+++.+.... ...|+|+|++.+|+++.++|++++||.+||++|++..|+| +++|+|+|+|+.|+|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~g~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~ 88 (111)
T 2ojr_A 11 GWIEGDELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDG 88 (111)
T ss_dssp SSCCGGGBCCCTTCSSSCCGGGSSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC--TTTEEEEETTEECCSS
T ss_pred ceecCCEEEEeecccccccCCCCCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcC--cccEEEEECCEECCCC
Confidence 35566666666543 2469999999999999999999999999999999999999 9999999999999999
Q ss_pred CcccccCCCCCCEEEEEeecC
Q 019968 165 RLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 165 ~tL~dy~I~~gsvIhLv~r~~ 185 (333)
.+|++|++++|++|||++|+.
T Consensus 89 ~tL~~~gI~~gs~I~l~~rl~ 109 (111)
T 2ojr_A 89 RTLSDYNIQKESTLHLVLRLR 109 (111)
T ss_dssp CBTTTTTCCTTCEEEEEECCC
T ss_pred CcHHHcCCCCCCEEEEEEeCC
Confidence 999999999999999998864
No 72
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.61 E-value=1.4e-15 Score=120.33 Aligned_cols=79 Identities=34% Similarity=0.617 Sum_probs=71.6
Q ss_pred cEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccccc
Q 019968 33 SILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQA 111 (333)
Q Consensus 33 ~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~m~ 111 (333)
.|+|+|+ ++|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|.+|+|++|++|+|++++.+++.
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~i~l~~r~~gG~~ 79 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGYAD 79 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCCC---
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEEcCCCCc
Confidence 3899995 78999999999999999999999999999999999999999998 999999999999999999999988765
Q ss_pred e
Q 019968 112 I 112 (333)
Q Consensus 112 I 112 (333)
.
T Consensus 80 ~ 80 (96)
T 3k9o_B 80 L 80 (96)
T ss_dssp -
T ss_pred c
Confidence 4
No 73
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.40 E-value=4.5e-17 Score=123.31 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=71.3
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
|+|+|++.+|+++.++|++++||++||++|++..|+| ++.|+|+|+|+.|+|+.+|++|++.+|++||+++|+.
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlr 74 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVP--ADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPR 74 (76)
Confidence 7899999999999999999999999999999999999 9999999999999999999999999999999998864
No 74
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.61 E-value=2.1e-15 Score=123.57 Aligned_cols=76 Identities=32% Similarity=0.413 Sum_probs=72.9
Q ss_pred cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
..|+|+|++.+|+++.++|++++||.+||++|+++.|+| +++|+|+|+|+.|+|+.+|++|+|+++++|||++|+.
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~ 109 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 109 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCC
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCC--hHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 369999999999999999999999999999999999999 9999999999999999999999999999999999864
No 75
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=1.4e-15 Score=119.28 Aligned_cols=76 Identities=30% Similarity=0.586 Sum_probs=68.3
Q ss_pred cEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 33 ~M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
.|+|+| +++|+++.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|++++.++
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBSGGGTCCTTCEEEEEC-----
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 699999 689999999999999999999999999999999999999999998 9999999999999999999987764
No 76
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.60 E-value=1.2e-15 Score=121.89 Aligned_cols=79 Identities=16% Similarity=0.290 Sum_probs=73.6
Q ss_pred CCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 30 ~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
+...|+|+|+ ++|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|++++.+
T Consensus 18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~-d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCHHHHTCCTTCEEEEEESSSC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcC-CCCCHHHCCCCCCCEEEEEEecCC
Confidence 3567999995 78999999999999999999999999999999999999999998 999999999999999999998765
Q ss_pred c
Q 019968 109 L 109 (333)
Q Consensus 109 ~ 109 (333)
+
T Consensus 97 G 97 (97)
T 1wyw_B 97 G 97 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 77
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=121.25 Aligned_cols=78 Identities=17% Similarity=0.310 Sum_probs=70.8
Q ss_pred CCCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 30 ~~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
....|+|+|+. |+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++|+.++
T Consensus 16 ~~~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 16 PRGSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLE-DEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp ----CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECC-TTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CCCcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEecCCC
Confidence 36679999987 899999999999999999999999999999999999999998 9999999999999999999988753
No 78
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=1.7e-15 Score=119.71 Aligned_cols=76 Identities=24% Similarity=0.355 Sum_probs=70.1
Q ss_pred cccceeEeeeCCc--EEEEEEecCCchHHHHHHHHHhc--CCCCCCCceEEEECCeecCCCCccccc--CCCCCCEEEEE
Q 019968 108 DLQAITVTTVCGK--VFEFHVERGRNVGYVKQQIAKKG--REFVDLKNQELICDGEELEDQRLITDI--CKRNEAVIHLL 181 (333)
Q Consensus 108 d~m~I~Vkt~~Gk--~~~l~V~~sdTV~~LK~~I~~~~--Gip~~~~~QrLif~Gk~LeD~~tL~dy--~I~~gsvIhLv 181 (333)
..|+|+|++.+|+ ++.++|++++||.+||++|++++ |+| +++|||+|+|+.|+|+.+|++| +|+++++|||+
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~--~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv 83 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPR--PEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLV 83 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCC--TTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEE
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCC--hHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEE
Confidence 4589999999998 66777779999999999999998 999 9999999999999999999999 99999999999
Q ss_pred eecC
Q 019968 182 VRKS 185 (333)
Q Consensus 182 ~r~~ 185 (333)
+++.
T Consensus 84 ~~~~ 87 (93)
T 1wgd_A 84 CNVK 87 (93)
T ss_dssp CCCC
T ss_pred eCCC
Confidence 8854
No 79
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.60 E-value=3e-15 Score=119.32 Aligned_cols=74 Identities=32% Similarity=0.447 Sum_probs=71.5
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
|+|+|++.+|+++.++|++++||++||++|++..|+| ++.|+|+|+|+.|+|+.+|++|++.+|++|+|+.+..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~ 74 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--hhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 7899999999999999999999999999999999999 9999999999999999999999999999999998864
No 80
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.59 E-value=3.1e-15 Score=122.53 Aligned_cols=78 Identities=35% Similarity=0.570 Sum_probs=73.2
Q ss_pred CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968 31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
...|+|+|+ ++|+++.++|.+++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|||++|+.++
T Consensus 33 ~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred CccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEecCCC
Confidence 457999996 78999999999999999999999999999999999999999998 9999999999999999999988653
No 81
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=1.3e-14 Score=121.45 Aligned_cols=78 Identities=21% Similarity=0.237 Sum_probs=70.0
Q ss_pred CCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 31 ~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
...|+|+|+..|+.+.++|++++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|.+|+|++|++|+|+.+..++
T Consensus 30 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 30 PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILK-DQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp CCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEES-TTSCGGGTTCSSSEEEEEEEC----
T ss_pred CCcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEeccCCC
Confidence 45799999744999999999999999999999999999999999999999998 9999999999999999999987654
No 82
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=7.9e-16 Score=125.40 Aligned_cols=79 Identities=20% Similarity=0.460 Sum_probs=72.3
Q ss_pred CCCcEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCc---------------ceEEEECCeecccCCccccccc
Q 019968 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVK---------------KQKLVFEGRELARSNSRVRDYG 93 (333)
Q Consensus 30 ~~~~M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~---------------~Q~Lif~G~~L~~D~~tL~dyg 93 (333)
+...|+|+| +++|++++++|.+++||.+||.+|+++.++|+. +|+|+|+|+.|.+|+.+|++||
T Consensus 4 ~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dyg 83 (105)
T 1v2y_A 4 GSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG 83 (105)
T ss_dssp CCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred CCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcC
Confidence 456799999 599999999999999999999999999999884 5799999999975779999999
Q ss_pred cccccceeeeeeccc
Q 019968 94 LADGNVLHLVLRLSD 108 (333)
Q Consensus 94 I~~gstV~Lv~rlsd 108 (333)
|++|++||++.++.+
T Consensus 84 I~~g~~l~lv~~lr~ 98 (105)
T 1v2y_A 84 IRNRDEVSFIKKLGQ 98 (105)
T ss_dssp CCSSEEEEEEECSCS
T ss_pred CCCCCEEEEEehhcc
Confidence 999999999998865
No 83
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.59 E-value=4.3e-15 Score=114.67 Aligned_cols=76 Identities=21% Similarity=0.426 Sum_probs=69.3
Q ss_pred CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHh---hCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSY---NGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~---~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
...|+|+|+ .+|+.+.++|++++||.+||.+|+.. +|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|+.+.
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS-DDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECC-TTSBGGGGCCCTTSEEEEEEC-
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECc-CCCCHHHcCCCCCCEEEEEEcC
Confidence 357999995 67999999999999999999999998 899999999999999998 9999999999999999998875
Q ss_pred c
Q 019968 107 S 107 (333)
Q Consensus 107 s 107 (333)
+
T Consensus 82 ~ 82 (85)
T 2wyq_A 82 T 82 (85)
T ss_dssp -
T ss_pred C
Confidence 4
No 84
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=2.3e-15 Score=122.20 Aligned_cols=83 Identities=18% Similarity=0.298 Sum_probs=72.8
Q ss_pred CCCCCCCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeee
Q 019968 25 RPEKLSNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (333)
Q Consensus 25 ~~~~~~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv 103 (333)
+|.+.+...|+|+|+ ++|+++.++|.+++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|.+|||++|++|||+
T Consensus 15 ~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~g~ti~lv 93 (106)
T 1ttn_A 15 EPPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLT-DKMKFEELKIPKDYVVQVI 93 (106)
T ss_dssp ------CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECC-TTSHHHHCCCSSSCEEEEE
T ss_pred CCCCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECC-CCCcHHHcCCCCCCEEEEE
Confidence 334445778999995 68999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred eeccc
Q 019968 104 LRLSD 108 (333)
Q Consensus 104 ~rlsd 108 (333)
.+.++
T Consensus 94 ~~~~~ 98 (106)
T 1ttn_A 94 VSQPV 98 (106)
T ss_dssp CCCSS
T ss_pred EeCCC
Confidence 87654
No 85
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.59 E-value=3e-15 Score=131.48 Aligned_cols=82 Identities=34% Similarity=0.571 Sum_probs=75.3
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccccce
Q 019968 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAI 112 (333)
Q Consensus 34 M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~m~I 112 (333)
|+|+| +++|++++++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|||++|+.++++.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~y~I~~gstI~Lvlrl~GG~k~ 79 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGGGE 79 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCCC---C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCcccc-CcCcHHHcCCCCCCEEEEEEEecccccc
Confidence 89999 479999999999999999999999999999999999999999998 9999999999999999999999988777
Q ss_pred eEee
Q 019968 113 TVTT 116 (333)
Q Consensus 113 ~Vkt 116 (333)
.|+.
T Consensus 80 ~vkf 83 (169)
T 3l0w_B 80 TIKF 83 (169)
T ss_dssp CEEE
T ss_pred cccc
Confidence 7765
No 86
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=3.6e-15 Score=120.05 Aligned_cols=78 Identities=22% Similarity=0.317 Sum_probs=72.7
Q ss_pred cccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 106 lsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
.+..|+|+|++.+|+ +.++|++++||.+||++|++..|+| +++|+|+|+|+.|+|+.+|++|+|++|++|+|++++.
T Consensus 19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~ 95 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAH--PDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQ 95 (100)
T ss_dssp CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcC--hhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCC
Confidence 345699999999886 7999999999999999999999999 9999999999999999999999999999999999865
Q ss_pred C
Q 019968 186 A 186 (333)
Q Consensus 186 ~ 186 (333)
.
T Consensus 96 ~ 96 (100)
T 1yqb_A 96 H 96 (100)
T ss_dssp C
T ss_pred C
Confidence 4
No 87
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=1e-15 Score=120.68 Aligned_cols=72 Identities=15% Similarity=0.295 Sum_probs=67.5
Q ss_pred EEEEE-EeCCeEEEEEec--CCCCHHHHHHHH-HHhhCCCCcceEEEECCeecccCCcccccccc-ccccceeeeeec
Q 019968 34 ILIFL-SVGGSVIPMRVM--ESDSIASVKLRI-QSYNGFFVKKQKLVFEGRELARSNSRVRDYGL-ADGNVLHLVLRL 106 (333)
Q Consensus 34 M~I~V-t~~G~~~~i~V~--~sdTV~~LK~kI-~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI-~~gstV~Lv~rl 106 (333)
|+|+| ++.|++++++|+ +++||.+||.+| +...|+|+++|+|+|+|+.|. |+.+|++|+| ++|++|+|..++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~-D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLH-DNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECC-TTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECc-CcCCHHHcCCCCCCCEEEEEcCC
Confidence 89999 589998988866 999999999999 999999999999999999998 9999999999 799999998875
No 88
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=2.9e-15 Score=120.97 Aligned_cols=68 Identities=9% Similarity=-0.013 Sum_probs=61.7
Q ss_pred eeEeeeC----CcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 019968 112 ITVTTVC----GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (333)
Q Consensus 112 I~Vkt~~----Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv 181 (333)
|.|+..+ +++++++|++++||.+||++|++++|+| +++|+|+|+|+.|+|+.||++|+|++|++|+++
T Consensus 18 i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip--~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl 89 (100)
T 1wju_A 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQ--ENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVL 89 (100)
T ss_dssp EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCC--STTCEEEETTEECCTTSBHHHHTCCSSEEEEEE
T ss_pred EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcC--HHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEE
Confidence 4444444 6789999999999999999999999999 999999999999999999999999999999554
No 89
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.58 E-value=7.1e-15 Score=111.11 Aligned_cols=73 Identities=27% Similarity=0.453 Sum_probs=68.4
Q ss_pred cEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 33 SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 33 ~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
.|+|+|+..|+.+.+++++++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|++|||++|++|++..+.
T Consensus 4 ~m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 4 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILK-DDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcC-CCCCHHHcCCCCCCEEEEEEcC
Confidence 488999668999999999999999999999999999999999999999998 8999999999999999998653
No 90
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.58 E-value=4.9e-15 Score=119.37 Aligned_cols=77 Identities=23% Similarity=0.326 Sum_probs=72.0
Q ss_pred cccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 106 lsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
....|+|+|++. |+++.++|++++||++||++|++..|+| ++.|+|+|+|+.|+|+.+|++|+|++|++|+|+.+++
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSH--TDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCC--GGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcC--hhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 345799999998 8899999999999999999999999999 9999999999999999999999999999999998864
No 91
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.58 E-value=3.2e-15 Score=122.22 Aligned_cols=78 Identities=22% Similarity=0.247 Sum_probs=73.5
Q ss_pred cccccceeEeee---CCcEEEEEEec-CCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 019968 106 LSDLQAITVTTV---CGKVFEFHVER-GRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (333)
Q Consensus 106 lsd~m~I~Vkt~---~Gk~~~l~V~~-sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv 181 (333)
.+..|+|+|++. +|+.+.++|++ ++||.+||++|++.+|+| +++|+|+|+|+.|+|+.+|++|+|.+|++|||+
T Consensus 24 ~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip--~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~ 101 (111)
T 1we6_A 24 HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIP--ANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLS 101 (111)
T ss_dssp CCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCC--TTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEE
T ss_pred CCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCC--HHHeEEEECCEECCCCCcHHHCCCCCCCEEEEE
Confidence 356799999998 89999999998 999999999999999999 999999999999999999999999999999999
Q ss_pred eecC
Q 019968 182 VRKS 185 (333)
Q Consensus 182 ~r~~ 185 (333)
+++.
T Consensus 102 ~r~~ 105 (111)
T 1we6_A 102 LRER 105 (111)
T ss_dssp CSSC
T ss_pred EEcC
Confidence 9864
No 92
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.58 E-value=4.4e-15 Score=119.53 Aligned_cols=76 Identities=16% Similarity=0.315 Sum_probs=68.1
Q ss_pred CCCcEEEEE-EeCCeEEEE--EecCCCCHHHHHHHH-HHhhCCCCcceEEEECCeecccCCcccccccc-ccccceeeee
Q 019968 30 SNDSILIFL-SVGGSVIPM--RVMESDSIASVKLRI-QSYNGFFVKKQKLVFEGRELARSNSRVRDYGL-ADGNVLHLVL 104 (333)
Q Consensus 30 ~~~~M~I~V-t~~G~~~~i--~V~~sdTV~~LK~kI-~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI-~~gstV~Lv~ 104 (333)
...+|+|+| ++.|+.+++ ++.+++||.+||.+| +...|+|+++|+|+|+|+.|. |+.+|++|+| ++|++|+|++
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~-D~~tL~dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLH-DNLFLSDLKVTPANSTITVMI 94 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEEC-TTCBGGGSCCBTTBCEEEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECc-CcCCHHHcCcCCCCCEEEEEE
Confidence 356899999 578987777 556999999999999 888999999999999999998 9999999999 9999999998
Q ss_pred ec
Q 019968 105 RL 106 (333)
Q Consensus 105 rl 106 (333)
+.
T Consensus 95 sk 96 (98)
T 4a20_A 95 KP 96 (98)
T ss_dssp CC
T ss_pred eC
Confidence 64
No 93
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.57 E-value=2.7e-15 Score=134.15 Aligned_cols=83 Identities=33% Similarity=0.506 Sum_probs=79.2
Q ss_pred CcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccccc
Q 019968 32 DSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ 110 (333)
Q Consensus 32 ~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~m 110 (333)
-.|+|+|+ ++|++++++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|||++++.++.
T Consensus 104 ~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~-D~~tL~dygI~~gstI~LvlrlrGG~ 182 (189)
T 3q3f_A 104 YGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGG 182 (189)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECC-TTCBGGGGTCCTTCEEEECCCCCCCC
T ss_pred cceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECC-CCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 35999996 78999999999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred ceeEe
Q 019968 111 AITVT 115 (333)
Q Consensus 111 ~I~Vk 115 (333)
.++|+
T Consensus 183 ~~fvk 187 (189)
T 3q3f_A 183 QTFTK 187 (189)
T ss_dssp CCCCC
T ss_pred cceEe
Confidence 99885
No 94
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.57 E-value=2.8e-15 Score=118.95 Aligned_cols=76 Identities=26% Similarity=0.326 Sum_probs=71.7
Q ss_pred ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
...|+|+|++. |+++.++|++++||.+||++|++.+|+| +++|+|+|+|+.|+|+.+|++|+|+++++|||+++..
T Consensus 15 ~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~ 90 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCN--ADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSH 90 (96)
T ss_dssp SCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSC--TTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCS
T ss_pred CCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCC
Confidence 34689999998 9999999999999999999999999999 9999999999999999999999999999999998864
No 95
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.57 E-value=2.8e-15 Score=120.80 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=65.9
Q ss_pred cccceeEeeeCCc--EEEEEEecCCchHHHHHHHHHh-cCCCCCCCceEEEECCeecCCCCccccc--CCCCCCEEEEE
Q 019968 108 DLQAITVTTVCGK--VFEFHVERGRNVGYVKQQIAKK-GREFVDLKNQELICDGEELEDQRLITDI--CKRNEAVIHLL 181 (333)
Q Consensus 108 d~m~I~Vkt~~Gk--~~~l~V~~sdTV~~LK~~I~~~-~Gip~~~~~QrLif~Gk~LeD~~tL~dy--~I~~gsvIhLv 181 (333)
..|+|+||+.+|+ +++++|++++||.+||++|+++ .|.| ++++|||+|+|+.|+|+.+|++| +|+++++|||+
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~p-p~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKP-LTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCC-CTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCC-ChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 4699999999998 6799999999999999999996 5665 15999999999999999999999 99999999985
No 96
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.57 E-value=7.4e-15 Score=121.69 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=68.2
Q ss_pred EEEEE--EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCcccccccccc-------ccceeeee
Q 019968 34 ILIFL--SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLAD-------GNVLHLVL 104 (333)
Q Consensus 34 M~I~V--t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~-------gstV~Lv~ 104 (333)
|.+|+ +....++.+++.+++||.+||.+|+.+.|+|+++|+|+|+|+.|+ |+.||++|||++ +++|||++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~Le-D~kTL~dy~I~~~ta~~q~~atl~Lvl 79 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLD-DGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECC-CcCCHHHcCCCcCcccCCCCCEEEEEE
Confidence 55666 567779999999999999999999999999999999999999998 999999999999 99999999
Q ss_pred eccc
Q 019968 105 RLSD 108 (333)
Q Consensus 105 rlsd 108 (333)
|..+
T Consensus 80 r~~~ 83 (118)
T 4ajy_B 80 RADD 83 (118)
T ss_dssp CCSS
T ss_pred ecCC
Confidence 9744
No 97
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.56 E-value=4.7e-15 Score=117.62 Aligned_cols=78 Identities=19% Similarity=0.300 Sum_probs=72.8
Q ss_pred CCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 31 ~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
...|+|+|+..|+.+.++|++++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|.+|+|++|++|||+.++.++
T Consensus 15 ~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 15 SRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILR-DQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp SCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECC-TTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred CCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECC-CcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 46899999755999999999999999999999999999999999999999998 9999999999999999999987653
No 98
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.56 E-value=1e-14 Score=116.59 Aligned_cols=77 Identities=10% Similarity=0.177 Sum_probs=71.5
Q ss_pred CCCcEEEEEEeCCeEE-EEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 30 SNDSILIFLSVGGSVI-PMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 30 ~~~~M~I~Vt~~G~~~-~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
+...|+|+|+..|+.+ .+++++++||.+||.+|++.+|+|+++|+|+|.|+.|. |+ +|.+|+|++|++|+|+....+
T Consensus 4 ~~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~-D~-tL~~~~I~~g~~i~l~~~~~~ 81 (96)
T 1wgg_A 4 GSSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLK-DD-DWGNIKMKNGMTVLMMGSADA 81 (96)
T ss_dssp CCCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECC-SS-CCCSCCCCSSCEEECCCCCCC
T ss_pred CCcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCC-CC-CHHHCCCCCCCEEEEEecchh
Confidence 4578999999899999 69999999999999999999999999999999999998 88 999999999999999876543
No 99
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.56 E-value=3.7e-15 Score=121.13 Aligned_cols=73 Identities=18% Similarity=0.352 Sum_probs=68.5
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968 34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (333)
Q Consensus 34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls 107 (333)
|+|+|+ ++|+++.++|++++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+++.+
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQ-DSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECC-TTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECC-CcCCHHHcCCCCCCEEEEEEcCC
Confidence 899996 79999999999999999999999999999999999999999998 99999999999999999998754
No 100
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=1.1e-14 Score=115.66 Aligned_cols=73 Identities=18% Similarity=0.418 Sum_probs=68.7
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHh---hCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968 34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSY---NGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (333)
Q Consensus 34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~---~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls 107 (333)
|+|+|+ ++|+.+.++|++++||.+||.+|+.. +|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+.+.+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILN-DDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECC-TTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECC-CcCcHHHCCCCCCCEEEEEEeCC
Confidence 899995 68999999999999999999999999 899999999999999998 99999999999999999988654
No 101
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=5.8e-15 Score=116.66 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=70.5
Q ss_pred CCcEEEEEE-eCCe--EEEEEecCCCCHHHHHHHHHHhh--CCCCcceEEEECCeecccCCcccccc--ccccccceeee
Q 019968 31 NDSILIFLS-VGGS--VIPMRVMESDSIASVKLRIQSYN--GFFVKKQKLVFEGRELARSNSRVRDY--GLADGNVLHLV 103 (333)
Q Consensus 31 ~~~M~I~Vt-~~G~--~~~i~V~~sdTV~~LK~kI~~~~--gip~~~Q~Lif~G~~L~~D~~tL~dy--gI~~gstV~Lv 103 (333)
...|+|+|+ .+|+ .+++++++++||.+||.+|++.+ ++|+++|+|+|+|+.|+ |+.+|++| +|++|++|||+
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~-D~~tL~~~~~~i~~~~~i~lv 83 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLL-DHQCLRDLLPKQEKRHVLHLV 83 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECC-SSSCHHHHSCSSSCSEEEEEE
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECc-CcCCHHHHhcCCCCCCEEEEE
Confidence 457999996 6676 67777889999999999999998 99999999999999998 99999999 99999999999
Q ss_pred eecccc
Q 019968 104 LRLSDL 109 (333)
Q Consensus 104 ~rlsd~ 109 (333)
+++.++
T Consensus 84 ~~~~gg 89 (93)
T 1wgd_A 84 CNVKSG 89 (93)
T ss_dssp CCCCCC
T ss_pred eCCCCC
Confidence 987653
No 102
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.55 E-value=2.5e-14 Score=116.98 Aligned_cols=78 Identities=35% Similarity=0.570 Sum_probs=72.8
Q ss_pred CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968 31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
...|+|+|+ .+|+.+.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|++|+.++
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECC-SSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 458999996 68999999999999999999999999999999999999999998 9999999999999999999987653
No 103
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=2e-14 Score=119.05 Aligned_cols=78 Identities=24% Similarity=0.304 Sum_probs=70.1
Q ss_pred CCCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHH------hhCC--CCcceEEEECCeecccCCccccccccccc--
Q 019968 29 LSNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQS------YNGF--FVKKQKLVFEGRELARSNSRVRDYGLADG-- 97 (333)
Q Consensus 29 ~~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~------~~gi--p~~~Q~Lif~G~~L~~D~~tL~dygI~~g-- 97 (333)
.+.+.|+|+|+ +.|++++++|++++||.+||.+|+. +.++ |+++|+|+|+|+.|+ |+.+|++|+|+.+
T Consensus 12 ~~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~Le-D~~TL~~y~I~~~~~ 90 (116)
T 1wgh_A 12 VPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLH-GNVTLGALKLPFGKT 90 (116)
T ss_dssp CCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEEC-SSCBTTTTTCCSSCE
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCC-CCCcHHHcCCCCCCc
Confidence 35678999995 7999999999999999999999999 6675 699999999999998 9999999999766
Q ss_pred cceeeeeecc
Q 019968 98 NVLHLVLRLS 107 (333)
Q Consensus 98 stV~Lv~rls 107 (333)
.++||++|+.
T Consensus 91 ~tlhLvlr~~ 100 (116)
T 1wgh_A 91 TVMHLVARET 100 (116)
T ss_dssp EEEEEEECSS
T ss_pred eEEEEEccCC
Confidence 6899998875
No 104
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.32 E-value=3.6e-16 Score=118.33 Aligned_cols=74 Identities=22% Similarity=0.422 Sum_probs=70.2
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
|+|+|+ .+|+++.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|||++|++|||++|+++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELP-NHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899995 78999999999999999999999999999999999999999998 999999999999999999998764
No 105
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.55 E-value=7.2e-15 Score=115.84 Aligned_cols=77 Identities=16% Similarity=0.331 Sum_probs=72.2
Q ss_pred CCCcEEEEEEeCCeEEEE-EecCCCCHHHHHHHHHHhhCCCCcceEEE---ECCeecccCCccccccccccccceeeeee
Q 019968 30 SNDSILIFLSVGGSVIPM-RVMESDSIASVKLRIQSYNGFFVKKQKLV---FEGRELARSNSRVRDYGLADGNVLHLVLR 105 (333)
Q Consensus 30 ~~~~M~I~Vt~~G~~~~i-~V~~sdTV~~LK~kI~~~~gip~~~Q~Li---f~G~~L~~D~~tL~dygI~~gstV~Lv~r 105 (333)
+...|+|+|+..|+++.+ ++++++||.+||.+|++.+|+|+++|+|+ |+|+.|. |+.+|++|+|++|++|+|+..
T Consensus 4 ~~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~-D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 4 GSSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAE-NDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CCCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECC-TTSBHHHHTCCTTEEEEEECC
T ss_pred CCceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcC-CCCCHHHcCCCCCCEEEEEec
Confidence 456899999989999999 99999999999999999999999999999 9999998 999999999999999999876
Q ss_pred cc
Q 019968 106 LS 107 (333)
Q Consensus 106 ls 107 (333)
..
T Consensus 83 ~~ 84 (90)
T 1v5t_A 83 RE 84 (90)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 106
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.55 E-value=1.5e-14 Score=117.77 Aligned_cols=74 Identities=12% Similarity=-0.048 Sum_probs=68.8
Q ss_pred ccceeEeeeCC--cEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCC-CCCCEEEEEeec
Q 019968 109 LQAITVTTVCG--KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK-RNEAVIHLLVRK 184 (333)
Q Consensus 109 ~m~I~Vkt~~G--k~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I-~~gsvIhLv~r~ 184 (333)
.|+|+|++..+ .+++++|++++||++||++|++++|+| +++|||+|+|+.++|++||.+||| ++|+++||++--
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gip--p~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFP--PVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCC--HHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 48899999875 789999999999999999999999999 999999999999999999999999 699999998753
No 107
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.54 E-value=2.3e-14 Score=115.42 Aligned_cols=77 Identities=19% Similarity=0.286 Sum_probs=71.7
Q ss_pred CCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 31 ~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
...|+|+|+..|+.+.++|++++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+.+++.
T Consensus 23 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 23 PKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILK-DQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp CCCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEEC-TTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHcCCCCCCEEEEEEcCCC
Confidence 46899999755899999999999999999999999999999999999999998 999999999999999999987653
No 108
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=1.4e-14 Score=117.30 Aligned_cols=76 Identities=22% Similarity=0.333 Sum_probs=71.2
Q ss_pred cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC
Q 019968 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~ 186 (333)
..|+|+|++.+|+ +.++|++++||.+||++|++.+|++ +++|+|+|+|+.|+|+.+|++|+|+++++|||+.++..
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAH--PDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 91 (106)
T ss_dssp SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCC--TTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCC
T ss_pred ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcC--hhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 4589999998886 7999999999999999999999999 99999999999999999999999999999999998653
No 109
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.54 E-value=8.7e-15 Score=130.86 Aligned_cols=76 Identities=32% Similarity=0.418 Sum_probs=73.0
Q ss_pred ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC
Q 019968 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (333)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~ 186 (333)
.|+|+|++.+|++++++|++++||.+||++|++.+|+| +++|+|+|+|+.|+|+.+|++|+|+++++|||++++..
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp--~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrG 180 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 180 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCC--HHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCC
Confidence 49999999999999999999999999999999999999 99999999999999999999999999999999998653
No 110
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=1.7e-14 Score=120.79 Aligned_cols=75 Identities=24% Similarity=0.321 Sum_probs=70.4
Q ss_pred cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
..|+|+|++. |+++.++|++++||.+||.+|+++.|+| +++|+|+|+|+.|+|+.+|++|+|++|++|||+.++.
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~ 105 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQ--TDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRD 105 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSC--SSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC--
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcC--cceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccC
Confidence 4689999998 9999999999999999999999999999 9999999999999999999999999999999999864
No 111
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.54 E-value=1.5e-14 Score=120.09 Aligned_cols=71 Identities=17% Similarity=0.203 Sum_probs=64.4
Q ss_pred EEEEE--EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccc-------cccceeeee
Q 019968 34 ILIFL--SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLA-------DGNVLHLVL 104 (333)
Q Consensus 34 M~I~V--t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~-------~gstV~Lv~ 104 (333)
|+++| +....+++++|.+++||.+||.+|+.+.|+|+++|+|+|+|+.|+ |+.+|++|||+ .+++|||++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~Le-D~~TLsdy~I~~~~a~~q~~stL~L~l 79 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLD-DGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECC-CCCCHHHcCcccccccCCCCCEEEEEe
Confidence 44555 444467999999999999999999999999999999999999998 99999999999 799999999
Q ss_pred e
Q 019968 105 R 105 (333)
Q Consensus 105 r 105 (333)
|
T Consensus 80 r 80 (118)
T 2fnj_B 80 R 80 (118)
T ss_dssp B
T ss_pred c
Confidence 8
No 112
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.53 E-value=1.5e-14 Score=116.50 Aligned_cols=76 Identities=13% Similarity=0.118 Sum_probs=70.0
Q ss_pred cccceeEeeeCC----cEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCC-CcccccCCCCCCEEEEEe
Q 019968 108 DLQAITVTTVCG----KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ-RLITDICKRNEAVIHLLV 182 (333)
Q Consensus 108 d~m~I~Vkt~~G----k~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~-~tL~dy~I~~gsvIhLv~ 182 (333)
..|+|+|++.++ ++++++|++++||++||++|++++|+| +++|+|+|+|+.|+|+ .+|++|+|++|++|||+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~ 83 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVP--AEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ 83 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCC--GGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcC--hHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence 458999999754 799999999999999999999999999 9999999999999887 799999999999999998
Q ss_pred ecC
Q 019968 183 RKS 185 (333)
Q Consensus 183 r~~ 185 (333)
+..
T Consensus 84 ~~~ 86 (102)
T 1v5o_A 84 KDN 86 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 113
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.53 E-value=2.7e-14 Score=114.90 Aligned_cols=78 Identities=21% Similarity=0.272 Sum_probs=71.4
Q ss_pred CCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 30 ~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
.+..|+|+|+ ..|+ +.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|+.++..
T Consensus 19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILK-DPDSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBHHHHTCCTTCEEEEEECCCC
T ss_pred CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHCCCCCCCEEEEEEcCCC
Confidence 3568999996 5665 799999999999999999999999999999999999998 999999999999999999998765
Q ss_pred c
Q 019968 109 L 109 (333)
Q Consensus 109 ~ 109 (333)
+
T Consensus 97 ~ 97 (100)
T 1yqb_A 97 R 97 (100)
T ss_dssp S
T ss_pred C
Confidence 3
No 114
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.53 E-value=2.3e-14 Score=115.41 Aligned_cols=79 Identities=16% Similarity=0.293 Sum_probs=70.5
Q ss_pred CCCcEEEEEE-eCC----eEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCC-ccccccccccccceeee
Q 019968 30 SNDSILIFLS-VGG----SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSN-SRVRDYGLADGNVLHLV 103 (333)
Q Consensus 30 ~~~~M~I~Vt-~~G----~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~-~tL~dygI~~gstV~Lv 103 (333)
+...|+|+|+ ..+ +.++++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+ .+|.+|+|++|++|+|+
T Consensus 4 ~~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~-D~~~tL~~ygI~~g~~l~l~ 82 (102)
T 1v5o_A 4 GSSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLT-DDHCSLGSYGLKDGDMVVLL 82 (102)
T ss_dssp CSCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEEC-CSSSBHHHHTCCTTEEEEEC
T ss_pred CCCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECC-CCcccHHHCCCCCCCEEEEE
Confidence 3457999995 333 79999999999999999999999999999999999999998 65 79999999999999999
Q ss_pred eecccc
Q 019968 104 LRLSDL 109 (333)
Q Consensus 104 ~rlsd~ 109 (333)
.+..++
T Consensus 83 ~~~~gg 88 (102)
T 1v5o_A 83 QKDNVG 88 (102)
T ss_dssp BCCCCC
T ss_pred ECCCCC
Confidence 887654
No 115
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.52 E-value=4.6e-14 Score=110.12 Aligned_cols=75 Identities=25% Similarity=0.470 Sum_probs=69.9
Q ss_pred CCCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeee
Q 019968 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (333)
Q Consensus 30 ~~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~r 105 (333)
+..++.+.++++|+.+.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|+.+
T Consensus 9 ~~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 9 SHSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLV-ETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp SCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECC-TTCBTTTTTCCTTEEEEEECC
T ss_pred cCCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECC-CcCCHHHCCCCCCCEEEEEEe
Confidence 345788888999999999999999999999999999999999999999999998 999999999999999998764
No 116
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.52 E-value=8.2e-16 Score=128.93 Aligned_cols=74 Identities=32% Similarity=0.456 Sum_probs=0.0
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
|+|+|++.+|++++++|++++||++||++|++.+|+| +++|+|+|+|+.|+|+.+|++|+|++|++|||++++.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~ 74 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (128)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcC--hHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcC
Confidence 7899999999999999999999999999999999999 9999999999999999999999999999999999864
No 117
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.52 E-value=1.8e-14 Score=117.68 Aligned_cols=77 Identities=26% Similarity=0.298 Sum_probs=72.2
Q ss_pred CcEEEEEE-e---CCeEEEEEecC-CCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 32 DSILIFLS-V---GGSVIPMRVME-SDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 32 ~~M~I~Vt-~---~G~~~~i~V~~-sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
..|+|+|+ . .|+.+.++|++ ++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|++++
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~-D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLK-DNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCC-TTSBTTTTTCSSSCEEEEECSS
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECC-CCCcHHHCCCCCCCEEEEEEEc
Confidence 47999995 5 78999999998 99999999999999999999999999999998 9999999999999999999988
Q ss_pred ccc
Q 019968 107 SDL 109 (333)
Q Consensus 107 sd~ 109 (333)
.++
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 765
No 118
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.52 E-value=4.4e-14 Score=114.98 Aligned_cols=76 Identities=18% Similarity=0.148 Sum_probs=68.6
Q ss_pred CCCCcEEEEEE-eC--CeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCcccccccc-ccccceeeee
Q 019968 29 LSNDSILIFLS-VG--GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL-ADGNVLHLVL 104 (333)
Q Consensus 29 ~~~~~M~I~Vt-~~--G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI-~~gstV~Lv~ 104 (333)
.++..|+|+|+ .. +..++++|+|++||++||.+|+.+.|+|+++|||+|+|+.+. |+.+|.+||| ++|+++||++
T Consensus 20 ~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~-D~~TL~~ygI~~~G~t~hL~l 98 (105)
T 4dbg_A 20 TQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLAR-DQETLHSHGVRQNGDSAYLYL 98 (105)
T ss_dssp CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC-TTCBTGGGTCCSTTCEEEEEE
T ss_pred CCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEcc-CcCcHHHcCCCCCCCEEEEEE
Confidence 35778999994 54 489999999999999999999999999999999999999887 9999999999 6999999987
Q ss_pred e
Q 019968 105 R 105 (333)
Q Consensus 105 r 105 (333)
-
T Consensus 99 ~ 99 (105)
T 4dbg_A 99 L 99 (105)
T ss_dssp C
T ss_pred E
Confidence 3
No 119
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.51 E-value=4.3e-14 Score=111.32 Aligned_cols=78 Identities=15% Similarity=0.280 Sum_probs=70.7
Q ss_pred CCCcEEEEEEeCCeEEEEEecCC-----CCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968 30 SNDSILIFLSVGGSVIPMRVMES-----DSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 30 ~~~~M~I~Vt~~G~~~~i~V~~s-----dTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
+...|+|+|+..|+.+.++++++ +||.+||.+|+..+|+|+++|+|+|+|+.|.+++.+|.+|+|++|++|||+.
T Consensus 4 ~~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 4 GSSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp CCSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred CCCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 35689999987889999999995 9999999999999999999999999999998337799999999999999987
Q ss_pred ecc
Q 019968 105 RLS 107 (333)
Q Consensus 105 rls 107 (333)
+..
T Consensus 84 ~~~ 86 (92)
T 1wxv_A 84 KKN 86 (92)
T ss_dssp CCS
T ss_pred cCC
Confidence 653
No 120
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.51 E-value=4.9e-14 Score=109.95 Aligned_cols=72 Identities=18% Similarity=0.192 Sum_probs=67.4
Q ss_pred ceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 111 ~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~ 184 (333)
.+++++.+|+++.++|++++||++||++|++.+|+| +++|+|+|+|+.|+|+.+|++|+|++|++|+|+.++
T Consensus 13 ~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s~ 84 (85)
T 2kd0_A 13 IKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVL--PRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQ 84 (85)
T ss_dssp EEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCC--TTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECCC
T ss_pred EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcC--hHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEeC
Confidence 456778899999999999999999999999999999 999999999999999999999999999999998653
No 121
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.51 E-value=3.5e-14 Score=112.48 Aligned_cols=74 Identities=18% Similarity=0.151 Sum_probs=68.9
Q ss_pred cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCC-CcccccCCCCCCEEEEEeecCC
Q 019968 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ-RLITDICKRNEAVIHLLVRKSA 186 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~-~tL~dy~I~~gsvIhLv~r~~~ 186 (333)
..|+|+|++.+|+.+.++|++++||.+||++|++.. +++|+|+|+|+.|+|+ .+|++|+|++|++|||+.+.+.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~-----~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ-----ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST-----TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC-----cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 458999999999999999999999999999999987 4899999999999998 9999999999999999998653
No 122
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.51 E-value=3.4e-14 Score=115.51 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=69.6
Q ss_pred cccceeEeeeCC---cEEEEEE--------ecC-CchHHHHHHHHHhc--CCCCCCCc-eEEEECCeecCCCCcccccCC
Q 019968 108 DLQAITVTTVCG---KVFEFHV--------ERG-RNVGYVKQQIAKKG--REFVDLKN-QELICDGEELEDQRLITDICK 172 (333)
Q Consensus 108 d~m~I~Vkt~~G---k~~~l~V--------~~s-dTV~~LK~~I~~~~--Gip~~~~~-QrLif~Gk~LeD~~tL~dy~I 172 (333)
..|+|+|++.+| +++.+++ +++ +||.+||++|++.+ |+| +++ |+|+|+|+.|+|+.+|++|+|
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip--~~~~qrLi~~Gk~L~D~~tL~~y~i 88 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVP--DPELIDLIYCGRKLKDDQTLDFYGI 88 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCC--CSSSEEEEETTEECCTTCBHHHHTC
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCC--hhhcEEEEECCeECCCCCcHHHcCC
Confidence 358999999999 8899994 454 99999999999999 999 999 999999999999999999999
Q ss_pred CCCCEEEEEeecC
Q 019968 173 RNEAVIHLLVRKS 185 (333)
Q Consensus 173 ~~gsvIhLv~r~~ 185 (333)
++|++|||+.+.+
T Consensus 89 ~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 89 QPGSTVHVLRKSW 101 (107)
T ss_dssp CTTCEEEEEESSC
T ss_pred CCCCEEEEEeCCC
Confidence 9999999998864
No 123
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.50 E-value=6.3e-14 Score=115.23 Aligned_cols=66 Identities=21% Similarity=0.241 Sum_probs=63.5
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 118 CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 118 ~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
+|++++++|++++||.+||++|++.+|+| +++|+|+|+|+.|+|+.+|++|+|.+|++|||++++.
T Consensus 44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~rl~ 109 (115)
T 1we7_A 44 NGQGLVFTLPLTDQVSVIKVKIHEATGMP--AGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKER 109 (115)
T ss_dssp SSEEEEEEECSCSBTHHHHHHHHHHSSCC--TTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEECCC
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHCCC--hHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcC
Confidence 58899999999999999999999999999 9999999999999999999999999999999999864
No 124
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.50 E-value=6.1e-14 Score=113.52 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=70.7
Q ss_pred CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968 31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
...|+|+|+ ..|+ +.++|++++||.+||.+|+..+|+++++|+|+|+|+.|. |+.+|.+|+|++|++|||+.++.++
T Consensus 15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILK-DPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECC-TTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 567999996 5555 799999999999999999999999999999999999998 9999999999999999999987653
No 125
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.49 E-value=1.8e-14 Score=116.37 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=64.1
Q ss_pred cEEEEEEe---CCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968 33 SILIFLSV---GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (333)
Q Consensus 33 ~M~I~Vt~---~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls 107 (333)
+++|++.- .++.++++|++++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|++|+|++|++| +++++.
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~-D~~TL~~y~I~~gsti-~vl~lr 92 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQ-LGKTLEEQGVAHNVKA-MVLELK 92 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECC-TTSBHHHHTCCSSEEE-EEECCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECC-CCCcHHHcCCCCCCEE-EEEEEC
Confidence 56666532 2688999999999999999999999999999999999999998 9999999999999999 555543
No 126
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.49 E-value=2e-15 Score=130.59 Aligned_cols=74 Identities=32% Similarity=0.456 Sum_probs=0.0
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
|+|+|++.+|++++++|++++||++||++|++.+|+| +++|+|+|+|+.|+|+.+|++|+|++|++|||++++.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~ 74 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (152)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeecc
Confidence 7899999999999999999999999999999999999 9999999999999999999999999999999999864
No 127
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.49 E-value=4e-14 Score=112.76 Aligned_cols=75 Identities=15% Similarity=0.197 Sum_probs=69.8
Q ss_pred CCCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 30 ~~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
+...|+|+|++.|+++.+++++++||.+||.+|+..+|+|+++|+|+|.|+.|+ |. +|.+|+|++|++|||+.+.
T Consensus 14 ~~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~-tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 14 GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DK-TLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp CCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SS-BHHHHCCCTTEEEEECCSS
T ss_pred CCceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cC-cHHHCCCCCCCEEEEEecc
Confidence 467899999999999999999999999999999999999999999999999994 65 9999999999999998754
No 128
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.49 E-value=6.6e-14 Score=110.27 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=70.1
Q ss_pred cccceeEeeeCCcEEEE-EEecCCchHHHHHHHHHhcCCCCCCCceEEE---ECCeecCCCCcccccCCCCCCEEEEEee
Q 019968 108 DLQAITVTTVCGKVFEF-HVERGRNVGYVKQQIAKKGREFVDLKNQELI---CDGEELEDQRLITDICKRNEAVIHLLVR 183 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l-~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi---f~Gk~LeD~~tL~dy~I~~gsvIhLv~r 183 (333)
..|+|+|+. .|+++.+ +|++++||.+||++|++++|+| +++|+|+ |+|+.|+|+.+|++|+|++|++|||+..
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip--~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVL--PERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCC--TTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcC--HHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 458999986 7899999 9999999999999999999999 9999999 9999999999999999999999999876
Q ss_pred cC
Q 019968 184 KS 185 (333)
Q Consensus 184 ~~ 185 (333)
..
T Consensus 83 ~~ 84 (90)
T 1v5t_A 83 RE 84 (90)
T ss_dssp CS
T ss_pred Cc
Confidence 43
No 129
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=5.3e-14 Score=113.59 Aligned_cols=76 Identities=14% Similarity=0.138 Sum_probs=67.7
Q ss_pred CCCcEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEE--CCeecccCCccccccccccccceeeeeec
Q 019968 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF--EGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 30 ~~~~M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif--~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
+...|.+++ ++.|++++++|++++||.+||.+|++++|+|+++|+|+| .|+ |. |+.+|++|+|+.|+++||+++.
T Consensus 5 ~~~~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~-D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 5 SSGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VE-DSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp CCCCEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CC-TTSBHHHHCCCSEEEEEECCSS
T ss_pred CCcceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CC-CcCCHHHcCCCCCCEEEEEecC
Confidence 344677776 799999999999999999999999999999999999986 455 87 9999999999999999998865
Q ss_pred c
Q 019968 107 S 107 (333)
Q Consensus 107 s 107 (333)
.
T Consensus 83 ~ 83 (100)
T 2dzm_A 83 L 83 (100)
T ss_dssp S
T ss_pred C
Confidence 3
No 130
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.48 E-value=7.9e-14 Score=116.91 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=70.3
Q ss_pred CCcEEEEE-EeCCeEE-EEEecCCCCHHHHHHHH-----HHhhCCCC--cceEEEECCeecccCCccccccccccc----
Q 019968 31 NDSILIFL-SVGGSVI-PMRVMESDSIASVKLRI-----QSYNGFFV--KKQKLVFEGRELARSNSRVRDYGLADG---- 97 (333)
Q Consensus 31 ~~~M~I~V-t~~G~~~-~i~V~~sdTV~~LK~kI-----~~~~gip~--~~Q~Lif~G~~L~~D~~tL~dygI~~g---- 97 (333)
.+.|+|+| +++|+.+ ++++++++||.+||.+| +.+.|+|+ ++|+|+|+|+.|+ |+.+|++|+|+.|
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~Le-D~~TLsdy~I~~~~~~~ 92 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLE-NSKTVKDYRSPVSNLAG 92 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECC-TTSBGGGGSCCTTSCTT
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECc-CCCcHHHcCCCcCCccC
Confidence 57899999 5899888 79999999999999999 56778986 8999999999998 9999999999998
Q ss_pred --cceeeeeecccc
Q 019968 98 --NVLHLVLRLSDL 109 (333)
Q Consensus 98 --stV~Lv~rlsd~ 109 (333)
.++||++++.++
T Consensus 93 ~v~tmhlVlrl~g~ 106 (126)
T 1se9_A 93 AVTTMHVIIQAPVT 106 (126)
T ss_dssp CCEEEEEEECCCSS
T ss_pred CcEEEEEEeccCCc
Confidence 689999988754
No 131
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.5e-14 Score=116.71 Aligned_cols=75 Identities=27% Similarity=0.426 Sum_probs=67.1
Q ss_pred CCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 31 ~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
...|+|+|+.+|+.+.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+ |+.+|++|||++|++|+|+.+.
T Consensus 26 ~m~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 26 AMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILK-DDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp ---CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECC-TTSBTTTTTCCTTEEEEECCCC
T ss_pred CcEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECC-CcCcHHHCCCCCCCEEEEEeCC
Confidence 44566666668999999999999999999999999999999999999999998 9999999999999999998753
No 132
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.47 E-value=3.4e-15 Score=125.17 Aligned_cols=75 Identities=36% Similarity=0.623 Sum_probs=0.0
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 34 M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
|+|+| +++|++++++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+ |+.+|++|||++|++|+|++++.++
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECC-CCCchhhhccCCCCEEEEEEEcCCC
Confidence 88999 578999999999999999999999999999999999999999998 9999999999999999999988765
No 133
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.47 E-value=1.2e-13 Score=109.39 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=68.9
Q ss_pred CCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCC-ccccccccccccceeeeeecc
Q 019968 30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSN-SRVRDYGLADGNVLHLVLRLS 107 (333)
Q Consensus 30 ~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~-~tL~dygI~~gstV~Lv~rls 107 (333)
+...|+|+|+ +.|+.+.++|++++||.+||.+|+... +++|+|+|+|+.|. |+ .+|.+|+|++|++|||+.+.+
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~-D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 4 GSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQ-DPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp CCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECC-CSSCBTTTTTCCTTEEEEEECCCC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEcc-CCcCCHHHcCCCCCCEEEEEECCC
Confidence 4568999995 789999999999999999999999987 89999999999998 77 999999999999999998765
Q ss_pred c
Q 019968 108 D 108 (333)
Q Consensus 108 d 108 (333)
.
T Consensus 80 ~ 80 (95)
T 1wia_A 80 G 80 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 134
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.47 E-value=1.3e-13 Score=113.25 Aligned_cols=77 Identities=26% Similarity=0.424 Sum_probs=70.7
Q ss_pred CcEEEEEEe-----------CCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccce
Q 019968 32 DSILIFLSV-----------GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVL 100 (333)
Q Consensus 32 ~~M~I~Vt~-----------~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV 100 (333)
..++|+|+. +|++++++|++++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~-D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIK-DSNSLAYYNMASGAVI 102 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEEC-TTSBHHHHTCCSSCEE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECC-CCCCHHHCCCCCCCEE
Confidence 367888853 4789999999999999999999999999999999999999998 9999999999999999
Q ss_pred eeeeecccc
Q 019968 101 HLVLRLSDL 109 (333)
Q Consensus 101 ~Lv~rlsd~ 109 (333)
||++++.++
T Consensus 103 ~lv~rl~GG 111 (115)
T 1we7_A 103 HLALKERSG 111 (115)
T ss_dssp EEEECCCSC
T ss_pred EEEEEcCCC
Confidence 999988765
No 135
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.46 E-value=9e-14 Score=111.07 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=68.5
Q ss_pred cccceeEeeeCCcEE-EEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 108 DLQAITVTTVCGKVF-EFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~-~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
+.|+|+|+. .|+++ .++|++++||.+||++|++++|+| +++|+|+|+|+.|+|+ +|++|+|+++++|||+....
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip--~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQ--PARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCC--TTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 458899985 78999 599999999999999999999999 9999999999999999 99999999999999987654
No 136
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.46 E-value=1e-13 Score=116.19 Aligned_cols=77 Identities=25% Similarity=0.295 Sum_probs=69.1
Q ss_pred CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHH------hhCCC--CcceEEEECCeecccCCcccccccccccc--c
Q 019968 31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQS------YNGFF--VKKQKLVFEGRELARSNSRVRDYGLADGN--V 99 (333)
Q Consensus 31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~------~~gip--~~~Q~Lif~G~~L~~D~~tL~dygI~~gs--t 99 (333)
...|+|+|+ ++|++++++|++++||.+||.+|+. +.|+| +++|+|+|+|+.|+ |+.+|++|+|+.|+ +
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~Le-D~~TL~~y~I~~~~~~t 93 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLH-GNVTLGALKLPFGKTTV 93 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEE-SSCBTGGGCCCTTSEEE
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCC-CCCcHHHcCCCCCCceE
Confidence 556999995 7899999999999999999999999 77884 89999999999998 99999999999765 7
Q ss_pred eeeeeeccc
Q 019968 100 LHLVLRLSD 108 (333)
Q Consensus 100 V~Lv~rlsd 108 (333)
+||++|+..
T Consensus 94 lhlv~r~~~ 102 (125)
T 2gow_A 94 MHLVARETL 102 (125)
T ss_dssp EEEEECSCC
T ss_pred EEEEecCCC
Confidence 888888753
No 137
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=5.2e-14 Score=113.64 Aligned_cols=73 Identities=14% Similarity=0.121 Sum_probs=68.0
Q ss_pred ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE--CCeecCCCCcccccCCCCCCEEEEEeec
Q 019968 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC--DGEELEDQRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif--~Gk~LeD~~tL~dy~I~~gsvIhLv~r~ 184 (333)
.|++++++.+|++++++|++++||++||++|++++|+| |++|+|+| .|+ |+|+.+|++|+|++|++|||+++.
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIp--p~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIP--VSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCC--TTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSS
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCC--hhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecC
Confidence 47888889999999999999999999999999999999 99999996 666 999999999999999999998874
No 138
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.45 E-value=2.2e-13 Score=107.28 Aligned_cols=75 Identities=19% Similarity=0.214 Sum_probs=68.4
Q ss_pred cccceeEeeeCCcEEEEEEecC-----CchHHHHHHHHHhcCCCCCCCceEEEECCeecCC-CCcccccCCCCCCEEEEE
Q 019968 108 DLQAITVTTVCGKVFEFHVERG-----RNVGYVKQQIAKKGREFVDLKNQELICDGEELED-QRLITDICKRNEAVIHLL 181 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~s-----dTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD-~~tL~dy~I~~gsvIhLv 181 (333)
..|.|+|++ .|+.+.++|+++ .||.+||++|++.+|+| +++|+|+|+|+.|.| +.+|++|+|++|++|||+
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip--~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~ 82 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVP--QSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI 82 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCC--TTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEE
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcC--HHHEEEEECCeecCCCcccHHHCCCCCCCEEEEE
Confidence 458899988 588999999995 99999999999999999 999999999999988 668999999999999998
Q ss_pred eecC
Q 019968 182 VRKS 185 (333)
Q Consensus 182 ~r~~ 185 (333)
.+..
T Consensus 83 ~~~~ 86 (92)
T 1wxv_A 83 GKKN 86 (92)
T ss_dssp SCCS
T ss_pred ecCC
Confidence 8754
No 139
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.45 E-value=8.1e-14 Score=112.26 Aligned_cols=72 Identities=17% Similarity=0.289 Sum_probs=63.4
Q ss_pred CCcEEEEEE-eCCe--EEEEEecCCCCHHHHHHHHHHh-hCCC-CcceEEEECCeecccCCcccccc--ccccccceeee
Q 019968 31 NDSILIFLS-VGGS--VIPMRVMESDSIASVKLRIQSY-NGFF-VKKQKLVFEGRELARSNSRVRDY--GLADGNVLHLV 103 (333)
Q Consensus 31 ~~~M~I~Vt-~~G~--~~~i~V~~sdTV~~LK~kI~~~-~gip-~~~Q~Lif~G~~L~~D~~tL~dy--gI~~gstV~Lv 103 (333)
...|+|+|+ ++|+ .+++++++++||.+||.+|+++ .|.| +++|+|+|+|+.|+ |+.+|++| +|++|++|||+
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~-D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLP-DHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEEC-TTSBTHHHHTTTCSEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECC-CCCCHHHHhcCCCCCCEEEeC
Confidence 457999996 6676 6799999999999999999986 5666 59999999999998 99999999 99999999985
No 140
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.45 E-value=1.7e-13 Score=107.51 Aligned_cols=66 Identities=14% Similarity=0.079 Sum_probs=60.4
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE-------CCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 118 CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC-------DGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 118 ~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif-------~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
.++.+..++++++||++||++|+.++|+| +++|||+| .|+.|+|+++|++|||++|++|||+-+.+
T Consensus 13 ~~~~~E~r~~~s~TI~~lK~ki~~~~Gip--~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~P 85 (86)
T 4b6w_A 13 RMRVPEKRYGLAQTIESIKENVFTHFATP--PEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQP 85 (86)
T ss_dssp SCCEEEEEEETTSBHHHHHHHHHTTSCCC--GGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CCeEEEEEcCccCcHHHHHHHHHHHHCCC--HHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCCC
Confidence 44667899999999999999999999999 99999996 58899999999999999999999987643
No 141
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.44 E-value=4.1e-13 Score=107.30 Aligned_cols=78 Identities=17% Similarity=0.235 Sum_probs=67.0
Q ss_pred CCCCCCCcEEEEEEe---CCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEEC--Ce---ecccCCccccccccccc
Q 019968 26 PEKLSNDSILIFLSV---GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE--GR---ELARSNSRVRDYGLADG 97 (333)
Q Consensus 26 ~~~~~~~~M~I~Vt~---~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~--G~---~L~~D~~tL~dygI~~g 97 (333)
.+......+.|+|+. .++.+++++.+++||++||.+|+..+|+|+++|+|+|. |+ .|.+|+.+|++|+|++|
T Consensus 8 ~~~~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~g 87 (95)
T 2kjr_A 8 HSHGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDG 87 (95)
T ss_dssp CCCCCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSS
T ss_pred cccCCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCC
Confidence 344456789999963 33589999999999999999999999999999999997 45 56449999999999999
Q ss_pred cceeee
Q 019968 98 NVLHLV 103 (333)
Q Consensus 98 stV~Lv 103 (333)
++|+|+
T Consensus 88 stihlv 93 (95)
T 2kjr_A 88 LRLHVV 93 (95)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 999986
No 142
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.44 E-value=3e-13 Score=108.11 Aligned_cols=74 Identities=11% Similarity=0.161 Sum_probs=64.5
Q ss_pred ccccceeEeeeCC--cEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEEC--Ce---ec-CCCCcccccCCCCCCEE
Q 019968 107 SDLQAITVTTVCG--KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD--GE---EL-EDQRLITDICKRNEAVI 178 (333)
Q Consensus 107 sd~m~I~Vkt~~G--k~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~--Gk---~L-eD~~tL~dy~I~~gsvI 178 (333)
.+.+.|+|+...+ +.+++++++++||++||++|+.++|+| +++|||+|. |+ .| +|+++|++|+|++|++|
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP--~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gsti 90 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGC--AGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRL 90 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSC--TTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcC--HHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEE
Confidence 4456777776555 478999999999999999999999999 999999997 55 55 89999999999999999
Q ss_pred EEEe
Q 019968 179 HLLV 182 (333)
Q Consensus 179 hLv~ 182 (333)
||+-
T Consensus 91 hlvD 94 (95)
T 2kjr_A 91 HVVD 94 (95)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9963
No 143
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.43 E-value=9.5e-15 Score=126.37 Aligned_cols=75 Identities=36% Similarity=0.623 Sum_probs=0.0
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 34 M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
|+|+| +++|++++++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++++.++
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEcc-ccCcHHHcCCCCCCEEEEEeeccCC
Confidence 88999 478999999999999999999999999999999999999999998 9999999999999999999987664
No 144
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.3e-13 Score=108.63 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=64.5
Q ss_pred ccceeEeeeCCcEE--EE-EEecCCchHHHHHHHHH-hcCCCCCCCceEEEEC--CeecCCCCcccccCCCCCCEEEE
Q 019968 109 LQAITVTTVCGKVF--EF-HVERGRNVGYVKQQIAK-KGREFVDLKNQELICD--GEELEDQRLITDICKRNEAVIHL 180 (333)
Q Consensus 109 ~m~I~Vkt~~Gk~~--~l-~V~~sdTV~~LK~~I~~-~~Gip~~~~~QrLif~--Gk~LeD~~tL~dy~I~~gsvIhL 180 (333)
.|+|+|++..|+.+ ++ +|++++||++||++|++ +.|+| +++|||+|. |+.|+|+.+|++|+|.++++||+
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~--~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWY--PARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSC--TTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCC--hHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 48999999998775 58 99999999999999999 48999 999999976 99999999999999999999886
No 145
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.40 E-value=2.1e-14 Score=128.15 Aligned_cols=69 Identities=20% Similarity=0.237 Sum_probs=0.0
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
|+|+|+|++|++++++|++++||.+||++|++.+|+| +++|+|+|+|++|+|+.+|+ ++++|||++|+.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP--~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLr 69 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFE--IDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLL 69 (189)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcC--hhHEEEEecCeECCCCCccc-----CCCEEEEEEecC
Confidence 7899999999999999999999999999999999999 99999999999999999999 899999999964
No 146
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.40 E-value=5.9e-13 Score=104.49 Aligned_cols=72 Identities=18% Similarity=0.132 Sum_probs=63.9
Q ss_pred cEEEEEE---eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEE-------CCeecccCCccccccccccccceee
Q 019968 33 SILIFLS---VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF-------EGRELARSNSRVRDYGLADGNVLHL 102 (333)
Q Consensus 33 ~M~I~Vt---~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif-------~G~~L~~D~~tL~dygI~~gstV~L 102 (333)
.++|+|+ .+.+.++..+++++||.+||.+|+..+|+|+++|+|+| .|+.|+ |+++|++|||++|++|||
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~-d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMA-NDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCC-TTSBGGGGTCCTTCEEEE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcC-CCCCHHHCCCCCCCEEEE
Confidence 3677776 34577899999999999999999999999999999996 478887 999999999999999999
Q ss_pred eee
Q 019968 103 VLR 105 (333)
Q Consensus 103 v~r 105 (333)
+-+
T Consensus 81 vd~ 83 (86)
T 4b6w_A 81 VDL 83 (86)
T ss_dssp EEC
T ss_pred EeC
Confidence 864
No 147
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.40 E-value=6.4e-13 Score=126.79 Aligned_cols=77 Identities=31% Similarity=0.440 Sum_probs=72.4
Q ss_pred cccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968 106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 106 lsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~ 184 (333)
.+..|+|+|++.+|+++.++|++++||++||++|+++.|+| +++|+|+|+|+.|+|+.+|++|+|+++++|||++|+
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp--~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--hHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 45679999999999999999999999999999999999999 999999999999999999999999999999999885
No 148
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.40 E-value=2.1e-13 Score=108.54 Aligned_cols=72 Identities=17% Similarity=0.104 Sum_probs=65.9
Q ss_pred ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~ 184 (333)
.|+|+|+ ..|+++.++|+++.||.+||++|++.+|+| +++|+|+|.|+.|+| .+|++|+|+++++|||+.+.
T Consensus 17 ~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip--~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 17 LVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLP--PAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp CEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSC--STTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCSS
T ss_pred eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEecc
Confidence 4778887 578999999999999999999999999999 999999999999954 59999999999999998764
No 149
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.3e-12 Score=107.99 Aligned_cols=90 Identities=11% Similarity=0.152 Sum_probs=76.8
Q ss_pred CCCCcEEEEEE--eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 29 LSNDSILIFLS--VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 29 ~~~~~M~I~Vt--~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
.....+.|.|+ ..+..+++++.++.||.+||.+++...++|+++|+|+|+|+.|. |+.||.+|||++|.+|||+.+.
T Consensus 11 ~~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLK-D~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 11 VEDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILK-NNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp CCSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEEC-SSCCHHHHSCCSSCEEEEEEEE
T ss_pred ccCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcC-CcchHHHcCCCCCCEEEEEEec
Confidence 34556777775 45789999999999999999999999999999999999999998 9999999999999999999987
Q ss_pred ccccceeEeeeCC
Q 019968 107 SDLQAITVTTVCG 119 (333)
Q Consensus 107 sd~m~I~Vkt~~G 119 (333)
.+.-..-+|...|
T Consensus 90 ~~p~~~p~~~~~~ 102 (118)
T 2daf_A 90 TNPDLYPVRRIDG 102 (118)
T ss_dssp SCTTTSCCCCCCS
T ss_pred CCCccCcceeccC
Confidence 6654444455444
No 150
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.38 E-value=9.4e-13 Score=105.65 Aligned_cols=75 Identities=19% Similarity=0.205 Sum_probs=65.5
Q ss_pred CCCcEEEEEEe---CCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCe---e---cccCCccccccccccccce
Q 019968 30 SNDSILIFLSV---GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR---E---LARSNSRVRDYGLADGNVL 100 (333)
Q Consensus 30 ~~~~M~I~Vt~---~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~---~---L~~D~~tL~dygI~~gstV 100 (333)
+...+.|+|+. .+..+++++.+++||++||.+|+..+|+|+++|+|+|.|+ . |.+|+.+|.+|+|++|++|
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I 90 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL 90 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence 46789999974 3357999999999999999999999999999999999883 3 4349999999999999999
Q ss_pred eeee
Q 019968 101 HLVL 104 (333)
Q Consensus 101 ~Lv~ 104 (333)
+|+-
T Consensus 91 hlvd 94 (97)
T 2kj6_A 91 HIID 94 (97)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9874
No 151
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.1e-12 Score=108.25 Aligned_cols=74 Identities=8% Similarity=0.131 Sum_probs=67.5
Q ss_pred cceeEe-eeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 110 QAITVT-TVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 110 m~I~Vk-t~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
+.|.|+ +..|+.+++.++++.||.+||+.++...++| +++|+|+|+||.|.|+.||.+|||++|.+|||+.+..
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP--~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~ 90 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIP--HSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFST 90 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCC--TTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEES
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCC--hHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecC
Confidence 445554 5567889999999999999999999999999 9999999999999999999999999999999999864
No 152
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=8.5e-13 Score=103.91 Aligned_cols=72 Identities=13% Similarity=0.180 Sum_probs=63.6
Q ss_pred CCCcEEEEE-EeCCeEE--EE-EecCCCCHHHHHHHHHHh-hCCCCcceEEEEC--CeecccCCccccccccccccceee
Q 019968 30 SNDSILIFL-SVGGSVI--PM-RVMESDSIASVKLRIQSY-NGFFVKKQKLVFE--GRELARSNSRVRDYGLADGNVLHL 102 (333)
Q Consensus 30 ~~~~M~I~V-t~~G~~~--~i-~V~~sdTV~~LK~kI~~~-~gip~~~Q~Lif~--G~~L~~D~~tL~dygI~~gstV~L 102 (333)
+...|+|+| ++.|+.+ ++ +|.|++||.+||.+|++. .|+|+++|+|+|. |+.|. |+.+|++|+|.+|++|++
T Consensus 7 ~~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~-D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 7 GMKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLK-DEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCC-TTCBTTTSSCCSEEEEEE
T ss_pred ceEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcC-CCCCHHHcCCCCCCEEEE
Confidence 345699999 5777664 58 999999999999999994 8999999999976 99998 999999999999999775
No 153
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.36 E-value=6.6e-13 Score=107.84 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=67.7
Q ss_pred CCcEEEEEE-eCC---eEEEEEec--------C-CCCHHHHHHHHHHhh--CCCCcc-eEEEECCeecccCCcccccccc
Q 019968 31 NDSILIFLS-VGG---SVIPMRVM--------E-SDSIASVKLRIQSYN--GFFVKK-QKLVFEGRELARSNSRVRDYGL 94 (333)
Q Consensus 31 ~~~M~I~Vt-~~G---~~~~i~V~--------~-sdTV~~LK~kI~~~~--gip~~~-Q~Lif~G~~L~~D~~tL~dygI 94 (333)
...|+|+|+ ..+ +.+.+++. + ++||.+||.+|+..+ |+|+++ |+|+|+|+.|. |+.+|.+|+|
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~-D~~tL~~y~i 88 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLK-DDQTLDFYGI 88 (107)
T ss_dssp CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECC-TTCBHHHHTC
T ss_pred CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECC-CCCcHHHcCC
Confidence 346999996 566 68999954 4 499999999999999 999999 99999999998 9999999999
Q ss_pred ccccceeeeeecc
Q 019968 95 ADGNVLHLVLRLS 107 (333)
Q Consensus 95 ~~gstV~Lv~rls 107 (333)
++|++|||+.+..
T Consensus 89 ~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 89 QPGSTVHVLRKSW 101 (107)
T ss_dssp CTTCEEEEEESSC
T ss_pred CCCCEEEEEeCCC
Confidence 9999999998754
No 154
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.35 E-value=1.2e-12 Score=104.99 Aligned_cols=72 Identities=15% Similarity=0.093 Sum_probs=61.6
Q ss_pred cceeEeeeCC--cEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCe---e---c-CCCCcccccCCCCCCEEEE
Q 019968 110 QAITVTTVCG--KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE---E---L-EDQRLITDICKRNEAVIHL 180 (333)
Q Consensus 110 m~I~Vkt~~G--k~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk---~---L-eD~~tL~dy~I~~gsvIhL 180 (333)
+.++|..... ..++++|++++||++||++|+.++|+| +++|||+|.|+ . | +|+++|++|+|++|++|||
T Consensus 15 v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip--~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTS--VNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp EEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCC--TTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred EEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcC--HHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 4556654333 478999999999999999999999999 99999999883 3 4 8999999999999999999
Q ss_pred Eee
Q 019968 181 LVR 183 (333)
Q Consensus 181 v~r 183 (333)
+-.
T Consensus 93 vd~ 95 (97)
T 2kj6_A 93 IDL 95 (97)
T ss_dssp EEC
T ss_pred EeC
Confidence 753
No 155
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.34 E-value=1e-12 Score=128.41 Aligned_cols=75 Identities=21% Similarity=0.308 Sum_probs=69.7
Q ss_pred cccceeEeeeCCcEEEEEEecCCchHHHHHHHHH---hcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEE-EEEee
Q 019968 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAK---KGREFVDLKNQELICDGEELEDQRLITDICKRNEAVI-HLLVR 183 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~---~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvI-hLv~r 183 (333)
..|+|+||+.+|+++.++|++++||.+||.+|++ +.|+| +++|||+|+|+.|+|+++|++|+|+++++| ||+.|
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip--~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k 83 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 83 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCC--STEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEEC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCC--hhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEec
Confidence 4599999999999999999999999999999999 67899 999999999999999999999999999998 66666
Q ss_pred c
Q 019968 184 K 184 (333)
Q Consensus 184 ~ 184 (333)
.
T Consensus 84 ~ 84 (368)
T 1oqy_A 84 T 84 (368)
T ss_dssp C
T ss_pred C
Confidence 4
No 156
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.31 E-value=1.6e-12 Score=105.76 Aligned_cols=74 Identities=15% Similarity=0.110 Sum_probs=67.4
Q ss_pred ccceeEeeeCCcEEEEEEe-cCCchHHHHHHHHHhcCCCCCCCceEEEECCe-----------e----cCCCCcccccCC
Q 019968 109 LQAITVTTVCGKVFEFHVE-RGRNVGYVKQQIAKKGREFVDLKNQELICDGE-----------E----LEDQRLITDICK 172 (333)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~-~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk-----------~----LeD~~tL~dy~I 172 (333)
.|.|.||+.+|+. .++|+ +++||.+||++|++++|+| +++|+|+|.|+ . ++|+.+|++|||
T Consensus 7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip--~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIP--IHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCC--TTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcC--cccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence 4889999999976 79999 9999999999999999999 99999999888 4 589999999999
Q ss_pred CCCCEEEEEeecC
Q 019968 173 RNEAVIHLLVRKS 185 (333)
Q Consensus 173 ~~gsvIhLv~r~~ 185 (333)
++|++|||+....
T Consensus 84 ~~G~~L~l~~~~~ 96 (107)
T 1wf9_A 84 AHGSMVYLAYEGE 96 (107)
T ss_dssp CTTCEEECCCSSC
T ss_pred CCCCEEEEEeCCC
Confidence 9999999986643
No 157
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.31 E-value=3.7e-12 Score=121.55 Aligned_cols=76 Identities=37% Similarity=0.635 Sum_probs=70.5
Q ss_pred CCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 30 ~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
....|+|+|+ ++|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++|+
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~-D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTGGGTCCTTCEEEEEC--
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecC-CCCCHHHcCCCCCCEEEEEEeC
Confidence 3568999996 68999999999999999999999999999999999999999998 9999999999999999999876
No 158
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.30 E-value=5.4e-12 Score=100.21 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=63.3
Q ss_pred cEEEEEEeCCe--EEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECC---ee---cccCCccccccccccccceeeee
Q 019968 33 SILIFLSVGGS--VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG---RE---LARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 33 ~M~I~Vt~~G~--~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G---~~---L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
.+.|+|+..+. .+++++.+++||.+||.+|+..+|+|+++|+|+|.| +. |.+|+.+|.+|||++|++||++-
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 47888876555 699999999999999999999999999999999986 43 43499999999999999999875
No 159
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.29 E-value=2.8e-13 Score=120.85 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=0.4
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccccc
Q 019968 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ 110 (333)
Q Consensus 34 M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~m 110 (333)
|+|+| +++|++++++|++++||.+||.+|+..+|+|+++|+|+|+|++|+ |+.+|+ ++++|||++|+.++.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~Le-D~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAP-NTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp -----------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECC-CCCccc-----CCCEEEEEEecCCCc
Confidence 89999 589999999999999999999999999999999999999999998 999998 899999999887753
No 160
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.28 E-value=1.1e-11 Score=103.10 Aligned_cols=74 Identities=16% Similarity=0.248 Sum_probs=64.6
Q ss_pred CcEEEEEEeCCe--EEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECC---e---ecccCCccccccccccccceeee
Q 019968 32 DSILIFLSVGGS--VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG---R---ELARSNSRVRDYGLADGNVLHLV 103 (333)
Q Consensus 32 ~~M~I~Vt~~G~--~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G---~---~L~~D~~tL~dygI~~gstV~Lv 103 (333)
..|.|+|+..+. .+++++.+++||++||.+|+..+|+|+++|+|+|.| + .|.+|+.+|.+|||++|++|||+
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 368888875554 689999999999999999999999999999999987 4 34349999999999999999998
Q ss_pred ee
Q 019968 104 LR 105 (333)
Q Consensus 104 ~r 105 (333)
..
T Consensus 85 d~ 86 (122)
T 1t0y_A 85 DV 86 (122)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 161
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=1.4e-11 Score=98.16 Aligned_cols=76 Identities=13% Similarity=0.268 Sum_probs=72.1
Q ss_pred cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
..|+|.|++.+|+.+.++|.+++++..|+..++++.|++ +++|||+|+|++|.++.|+++|++++|++||+++++.
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~ 81 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 81 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCE
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 458899999999999999999999999999999999999 9999999999999999999999999999999998753
No 162
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.27 E-value=3.7e-12 Score=124.41 Aligned_cols=79 Identities=23% Similarity=0.462 Sum_probs=69.7
Q ss_pred CCCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHH---hhCCCCcceEEEECCeecccCCccccccccccccce-eee
Q 019968 29 LSNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQS---YNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVL-HLV 103 (333)
Q Consensus 29 ~~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~---~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV-~Lv 103 (333)
.+...|+|+|+ ++|+++.++|++++||.+||.+|+. +.|+|+++|+|+|+|+.|. |+.+|.+|+|++|++| +|+
T Consensus 3 ~~~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~-D~~tL~dygI~~gstIv~lv 81 (368)
T 1oqy_A 3 LGSSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS-DDVPIRDYRIDEKNFVVVMV 81 (368)
T ss_dssp ---CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEEC-SSSBTTTTCCCTTSCEEEEE
T ss_pred CCCceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecC-CcCCHHHcCCCCCCEEEEEE
Confidence 35678999995 6899999999999999999999999 6789999999999999998 9999999999999998 666
Q ss_pred eeccc
Q 019968 104 LRLSD 108 (333)
Q Consensus 104 ~rlsd 108 (333)
.|...
T Consensus 82 ~k~~~ 86 (368)
T 1oqy_A 82 TKTKA 86 (368)
T ss_dssp ECCCS
T ss_pred ecCCC
Confidence 66643
No 163
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.26 E-value=7.5e-12 Score=99.38 Aligned_cols=72 Identities=13% Similarity=0.047 Sum_probs=61.1
Q ss_pred cceeEeeeCCc-EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECC---ee----cCCCCcccccCCCCCCEEEEE
Q 019968 110 QAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG---EE----LEDQRLITDICKRNEAVIHLL 181 (333)
Q Consensus 110 m~I~Vkt~~Gk-~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~G---k~----LeD~~tL~dy~I~~gsvIhLv 181 (333)
+.|.|+..... .+.+++++++||++||++|+.++|+| +++|||+|.| +. ++|+++|++|+|++|++||++
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip--~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSP--ASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSC--TTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCC--HHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence 44556543332 68899999999999999999999999 9999999986 43 489999999999999999997
Q ss_pred ee
Q 019968 182 VR 183 (333)
Q Consensus 182 ~r 183 (333)
-.
T Consensus 86 d~ 87 (95)
T 1v6e_A 86 DH 87 (95)
T ss_dssp CC
T ss_pred EC
Confidence 54
No 164
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.25 E-value=5.7e-12 Score=102.43 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=66.5
Q ss_pred CCCcEEEEEE-eCCeEEEEEec-CCCCHHHHHHHHHHhhCCCCcceEEEECCe-----------ec---ccCCccccccc
Q 019968 30 SNDSILIFLS-VGGSVIPMRVM-ESDSIASVKLRIQSYNGFFVKKQKLVFEGR-----------EL---ARSNSRVRDYG 93 (333)
Q Consensus 30 ~~~~M~I~Vt-~~G~~~~i~V~-~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~-----------~L---~~D~~tL~dyg 93 (333)
+...|+|+|+ .+|.. .++|+ +++||.+||.+|+..+|+|+++|+|+|.|+ .| .+|+.+|++||
T Consensus 4 ~~~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~g 82 (107)
T 1wf9_A 4 GSSGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLN 82 (107)
T ss_dssp SCCCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTC
T ss_pred CCCeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCC
Confidence 3456999995 67765 79999 999999999999999999999999999888 43 34999999999
Q ss_pred cccccceeeeeec
Q 019968 94 LADGNVLHLVLRL 106 (333)
Q Consensus 94 I~~gstV~Lv~rl 106 (333)
|++|++|||....
T Consensus 83 i~~G~~L~l~~~~ 95 (107)
T 1wf9_A 83 LAHGSMVYLAYEG 95 (107)
T ss_dssp CCTTCEEECCCSS
T ss_pred CCCCCEEEEEeCC
Confidence 9999999998653
No 165
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.22 E-value=2.7e-11 Score=100.67 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=63.1
Q ss_pred ccceeEeeeCCc-EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECC---e---ec-CCCCcccccCCCCCCEEEE
Q 019968 109 LQAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG---E---EL-EDQRLITDICKRNEAVIHL 180 (333)
Q Consensus 109 ~m~I~Vkt~~Gk-~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~G---k---~L-eD~~tL~dy~I~~gsvIhL 180 (333)
.+.|.|+...+. .+++++++++||++||++|+.++|+| +++|||+|.| + +| +|+++|++|||++|++|||
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip--~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTT--VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCC--TTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCC--HHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 456667554432 68899999999999999999999999 9999999977 4 34 8999999999999999999
Q ss_pred Eeec
Q 019968 181 LVRK 184 (333)
Q Consensus 181 v~r~ 184 (333)
+...
T Consensus 84 vd~~ 87 (122)
T 1t0y_A 84 VDVT 87 (122)
T ss_dssp EECT
T ss_pred EeCC
Confidence 8653
No 166
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.20 E-value=1.7e-11 Score=117.69 Aligned_cols=77 Identities=17% Similarity=0.308 Sum_probs=69.3
Q ss_pred CCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE---ECCeecccCCccccccccccccceeeeeecc
Q 019968 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV---FEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (333)
Q Consensus 31 ~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li---f~G~~L~~D~~tL~dygI~~gstV~Lv~rls 107 (333)
.+.|.|+|+.+|+.+++++++++||++||.+|++.+|+|+++|+|+ |+|+.|. |+.+|++|+|++|++|+|+....
T Consensus 3 ~~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~-D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 3 VKEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAA-DNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp -CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCC-TTSBTTSSCCC--CEEEEECCCC
T ss_pred CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccC-ccccHHHcCCCCCCEEEEEccch
Confidence 4578999999999999999999999999999999999999999999 8999998 99999999999999999987654
Q ss_pred c
Q 019968 108 D 108 (333)
Q Consensus 108 d 108 (333)
+
T Consensus 82 ~ 82 (320)
T 3shq_A 82 A 82 (320)
T ss_dssp -
T ss_pred h
Confidence 4
No 167
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.19 E-value=4.6e-11 Score=95.18 Aligned_cols=79 Identities=13% Similarity=0.291 Sum_probs=73.2
Q ss_pred CCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 30 ~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
..+.|+|+|+ .+|+.+.+.|.+++++..|+.+++++.|+++++++|+|+|++|. ++.|.++|++.+|++|+++++..+
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~~~~G 82 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTG 82 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTCEEEEEECCEE
T ss_pred CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEeccC
Confidence 3567999995 78999999999999999999999999999999999999999998 999999999999999999998876
Q ss_pred c
Q 019968 109 L 109 (333)
Q Consensus 109 ~ 109 (333)
+
T Consensus 83 G 83 (94)
T 2io1_B 83 G 83 (94)
T ss_dssp S
T ss_pred C
Confidence 5
No 168
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.16 E-value=3.1e-11 Score=94.05 Aligned_cols=71 Identities=11% Similarity=0.076 Sum_probs=63.5
Q ss_pred cceeEeeeCCcEEEEE-EecCCchHHHHHHHHHhcCCCCCCCceEEEEC--CeecC---CCCcccccCCCCCCEEEEEee
Q 019968 110 QAITVTTVCGKVFEFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICD--GEELE---DQRLITDICKRNEAVIHLLVR 183 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~-V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~--Gk~Le---D~~tL~dy~I~~gsvIhLv~r 183 (333)
|+|.|++.+|+. .+. +++++||.+||++|++++|+| +++|+|+|+ ++.|+ |+.+|++|||.+|++||+.-.
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~--~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIA--PGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCC--TTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCC--ccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 789999999965 477 999999999999999999999 999999987 48874 688999999999999998654
No 169
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.15 E-value=1.1e-10 Score=88.10 Aligned_cols=70 Identities=13% Similarity=0.264 Sum_probs=67.2
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv 181 (333)
|.|.|++.+|+.+.+.|.+++++..|+...+++.|++ +.+++|+|+|++|.++.|.++|++++|++|+++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCC--TTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 5688899999999999999999999999999999999 999999999999999999999999999999986
No 170
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.15 E-value=1.8e-10 Score=91.31 Aligned_cols=76 Identities=13% Similarity=0.268 Sum_probs=71.7
Q ss_pred cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
..|.|.|++.+|+.+.+.|.+++++..|+...+++.|++ +.+++|+|+|++|.++.|.++|++++|++|+++....
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 79 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 79 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCC--STTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 457889999999999999999999999999999999999 9999999999999999999999999999999998754
No 171
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.07 E-value=4.5e-10 Score=86.46 Aligned_cols=73 Identities=12% Similarity=0.124 Sum_probs=68.6
Q ss_pred ccccceeEeeeCCc-EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 019968 107 SDLQAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (333)
Q Consensus 107 sd~m~I~Vkt~~Gk-~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv 181 (333)
+..|.|.|++.+|+ .+.+.|.+++++..|+...+++.|++ +++++|+|+|+.|.++.|..+|++++|++||+.
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLS--GHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCT--TCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35688899999996 89999999999999999999999999 999999999999999999999999999999985
No 172
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.07 E-value=4.5e-10 Score=89.17 Aligned_cols=76 Identities=13% Similarity=0.266 Sum_probs=71.3
Q ss_pred ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~ 184 (333)
...|.|.|++.+|+.+.+.|.+++++..|+...+++.|++ +++++|+|+|+.|.++.|..+|++.+|++||+++++
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~--~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q 90 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQ 90 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCC--ccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeec
Confidence 3457888899999999999999999999999999999999 999999999999999999999999999999998865
No 173
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.06 E-value=1.4e-10 Score=111.24 Aligned_cols=75 Identities=16% Similarity=0.217 Sum_probs=66.8
Q ss_pred ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE---ECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI---CDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi---f~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
.|.|.|+. +|++++++|++++||++||++|++++|+| +++|+|+ |+|+.|.|+.+|++|+|++|++|||+....
T Consensus 5 ~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVp--p~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 5 EVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVR--PERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp EEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCC--GGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred eEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence 36678874 79999999999999999999999999999 9999999 899999999999999999999999987755
Q ss_pred C
Q 019968 186 A 186 (333)
Q Consensus 186 ~ 186 (333)
.
T Consensus 82 ~ 82 (320)
T 3shq_A 82 A 82 (320)
T ss_dssp -
T ss_pred h
Confidence 4
No 174
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.04 E-value=2.4e-10 Score=88.96 Aligned_cols=71 Identities=13% Similarity=0.199 Sum_probs=61.3
Q ss_pred EEEEEE-eCCeEEEEE-ecCCCCHHHHHHHHHHhhCCCCcceEEEEC--Ceecc--cCCccccccccccccceeeeee
Q 019968 34 ILIFLS-VGGSVIPMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFE--GRELA--RSNSRVRDYGLADGNVLHLVLR 105 (333)
Q Consensus 34 M~I~Vt-~~G~~~~i~-V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~--G~~L~--~D~~tL~dygI~~gstV~Lv~r 105 (333)
|+|.|+ .+|+ ..+. +++++||.+||.+|++++|+|+++|+|+|+ ++.|. +|+.+|++|||.+|++|++...
T Consensus 1 m~i~vr~~~G~-~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGT-HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEE-EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCC-EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 789996 5664 4588 999999999999999999999999999986 47773 3688999999999999998754
No 175
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.04 E-value=6.7e-10 Score=87.96 Aligned_cols=78 Identities=13% Similarity=0.301 Sum_probs=72.4
Q ss_pred CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968 31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
.+.|+|.|+ .+|+.+.+.|.+++++..|+...+++.|+++++++|+|+|+.|. ++.|.++|++.+|++|+++.+..++
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEeccCC
Confidence 357899995 78999999999999999999999999999999999999999998 9999999999999999999887665
No 176
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.02 E-value=1.9e-09 Score=87.75 Aligned_cols=85 Identities=13% Similarity=0.246 Sum_probs=74.4
Q ss_pred CCCCCCCCCCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceee
Q 019968 23 THRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHL 102 (333)
Q Consensus 23 ~~~~~~~~~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~L 102 (333)
+..+.......|+|.|+-+|+.+.+.|.+++++..|+...+++.|+++++++|+|+|+.|. ++.|..+|++.+|++|++
T Consensus 21 ~~~~~~~~~~~I~IkV~~~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~-~~~Tp~dl~medgD~Idv 99 (106)
T 2eke_C 21 EVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEA 99 (106)
T ss_dssp CCCCCCCCCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEE
T ss_pred ccCCCCCCCCeEEEEEecCCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcC-CCCCHHHcCCCCCCEEEE
Confidence 3444444567899999338999999999999999999999999999999999999999998 999999999999999999
Q ss_pred eeeccc
Q 019968 103 VLRLSD 108 (333)
Q Consensus 103 v~rlsd 108 (333)
+++..+
T Consensus 100 ~~~q~G 105 (106)
T 2eke_C 100 HREQIG 105 (106)
T ss_dssp EECC--
T ss_pred Eeeccc
Confidence 887654
No 177
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.01 E-value=1.1e-09 Score=89.09 Aligned_cols=75 Identities=11% Similarity=0.201 Sum_probs=70.7
Q ss_pred ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~ 184 (333)
+..|.|.|++ +|+.+.+.|.+++++..|+...+++.|++ +.+++|+|+|+.|.++.|.++|++++|++|++++++
T Consensus 29 ~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~--~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q 103 (106)
T 2eke_C 29 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 103 (106)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred CCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCC--cccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeec
Confidence 3558899999 99999999999999999999999999999 999999999999999999999999999999998865
No 178
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.01 E-value=1.2e-09 Score=86.77 Aligned_cols=78 Identities=13% Similarity=0.324 Sum_probs=71.0
Q ss_pred CCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 30 ~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
+...|+|.|+ .+|+.+.+.|.+++++..|+...+++.|+++++++|+|+|+.|. ++.|..+|++.+|++|+++++..+
T Consensus 14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~dl~medgD~Idv~~~q~G 92 (93)
T 2d07_B 14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTG 92 (93)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECC--
T ss_pred CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcC-CCCCHHHcCCCCCCEEEEEeeccC
Confidence 3568999995 78899999999999999999999999999999999999999998 999999999999999999987654
No 179
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.00 E-value=5.4e-10 Score=90.63 Aligned_cols=77 Identities=13% Similarity=0.269 Sum_probs=71.9
Q ss_pred ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
...|.|.|++.+|+.+.+.|.+++++..|+...+++.|++ +.++||+|+|+.|.++.|..+|++++|++||+++++.
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 98 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 98 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCC--TTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCC
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 3467888999999999999999999999999999999999 9999999999999999999999999999999987754
No 180
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.98 E-value=1e-09 Score=87.26 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=64.9
Q ss_pred CCcEEEEEE----eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECC-------eecccCCccccccccccccc
Q 019968 31 NDSILIFLS----VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG-------RELARSNSRVRDYGLADGNV 99 (333)
Q Consensus 31 ~~~M~I~Vt----~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G-------~~L~~D~~tL~dygI~~gst 99 (333)
...++|+|+ .+|..+...+.+++||++||.+|+..+|+|+..|+|+|.+ ..|.+|+.+|.+|+|.+|++
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~ 86 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDC 86 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCE
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCE
Confidence 345777775 4678899999999999999999999999999999999863 23767999999999999999
Q ss_pred eeeeee
Q 019968 100 LHLVLR 105 (333)
Q Consensus 100 V~Lv~r 105 (333)
||+...
T Consensus 87 I~V~d~ 92 (97)
T 1wjn_A 87 LLVRWS 92 (97)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 999764
No 181
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.98 E-value=1.4e-09 Score=81.97 Aligned_cols=69 Identities=12% Similarity=0.322 Sum_probs=65.7
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeee
Q 019968 34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (333)
Q Consensus 34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv 103 (333)
|+|.|+ .+|+.+.+.|.+++++..|+...+++.|+++++++++|+|+.|. ++.|.++|++.+|++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECC-TTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEE
Confidence 788885 78999999999999999999999999999999999999999998 9999999999999999885
No 182
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.97 E-value=2e-09 Score=88.12 Aligned_cols=80 Identities=10% Similarity=0.237 Sum_probs=74.0
Q ss_pred CCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 30 ~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
....|+|.|+ .+|+.+.+.|.+++++..|+...+++.|+++.+++|+|+|++|. ++.|..+|++.+|++|++++...+
T Consensus 23 ~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~-~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 23 ETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPID-ETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp CCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCC-SSSHHHHHHCSSEEEEEEECCCCC
T ss_pred CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEcccC
Confidence 4578999995 78899999999999999999999999999999999999999998 999999999999999999988776
Q ss_pred cc
Q 019968 109 LQ 110 (333)
Q Consensus 109 ~m 110 (333)
+.
T Consensus 102 g~ 103 (110)
T 2k8h_A 102 GL 103 (110)
T ss_dssp C-
T ss_pred cc
Confidence 54
No 183
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.96 E-value=2e-09 Score=82.81 Aligned_cols=73 Identities=12% Similarity=0.277 Sum_probs=68.0
Q ss_pred CCCcEEEEEE-eCCe-EEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeee
Q 019968 30 SNDSILIFLS-VGGS-VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (333)
Q Consensus 30 ~~~~M~I~Vt-~~G~-~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv 103 (333)
..+.|+|.|+ .+|+ .+.+.|.+++++..|+...+++.|+++++++|+|+|+.|. ++.|..+|++.+|++|++.
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLS-GKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECC-SCCCHHHHTCCTTCEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEe
Confidence 4568999995 7885 8999999999999999999999999999999999999998 9999999999999999874
No 184
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.95 E-value=8.1e-10 Score=90.49 Aligned_cols=78 Identities=15% Similarity=0.275 Sum_probs=72.8
Q ss_pred ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC
Q 019968 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (333)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~ 186 (333)
+..|.|.|++.+|+.+.+.|.+++++..|+...+++.|++ +.+++|+|+|++|.++.|..+|++++|++|++++....
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~--~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGIS--RNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCC--SSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccC
Confidence 4568899999999999999999999999999999999999 99999999999999999999999999999999887643
No 185
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.94 E-value=1.8e-09 Score=87.54 Aligned_cols=79 Identities=13% Similarity=0.303 Sum_probs=73.3
Q ss_pred CCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 30 ~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
....|+|.|+ .+|+.+.+.|.+++++..|+...+++.|+++++++|+|+|+.|. ++.|..+|++.+|++|+++++..+
T Consensus 21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~~q~G 99 (104)
T 1wz0_A 21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTS 99 (104)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCC-TTSCTTTTTCCTTEEEEECCCCCC
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEeccC
Confidence 3568999995 78999999999999999999999999999999999999999998 999999999999999999987765
Q ss_pred c
Q 019968 109 L 109 (333)
Q Consensus 109 ~ 109 (333)
+
T Consensus 100 G 100 (104)
T 1wz0_A 100 G 100 (104)
T ss_dssp C
T ss_pred C
Confidence 4
No 186
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.86 E-value=7.8e-09 Score=82.06 Aligned_cols=72 Identities=13% Similarity=0.079 Sum_probs=61.1
Q ss_pred cceeEee---eCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECC-------eec-CCCCcccccCCCCCCEE
Q 019968 110 QAITVTT---VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG-------EEL-EDQRLITDICKRNEAVI 178 (333)
Q Consensus 110 m~I~Vkt---~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~G-------k~L-eD~~tL~dy~I~~gsvI 178 (333)
+.|.|+. .+|+.+..++.++.||++||.+|+..+|+| +..|+|.|.+ ..| +|.++|++|++.+|++|
T Consensus 10 v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip--~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I 87 (97)
T 1wjn_A 10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVP--VSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL 87 (97)
T ss_dssp EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCC--TTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred EEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCC--hhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence 4455543 467788999999999999999999999999 9999999863 235 67899999999999999
Q ss_pred EEEee
Q 019968 179 HLLVR 183 (333)
Q Consensus 179 hLv~r 183 (333)
|+...
T Consensus 88 ~V~d~ 92 (97)
T 1wjn_A 88 LVRWS 92 (97)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99764
No 187
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.52 E-value=4.6e-07 Score=74.60 Aligned_cols=75 Identities=12% Similarity=0.237 Sum_probs=69.4
Q ss_pred cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~ 184 (333)
+.+.|.|++.+|+.+.+.|.+++++..|+...+++.|++ +.+++++|+|+.|.++.|..++++.+|++|+++...
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~--~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP--MNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC--TTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCC--hhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 346777888889999999999999999999999999999 999999999999999999999999999999998753
No 188
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.48 E-value=5.1e-07 Score=81.10 Aligned_cols=78 Identities=12% Similarity=0.234 Sum_probs=73.2
Q ss_pred CCCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 30 ~~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
....++|.|+.+|+...+.|.+++++..|+...+++.|+++++++++|+|++|. ++.|..++++.+|++|++.....+
T Consensus 26 ~~~~I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~-~~~TP~dL~MEdgD~Idv~~~q~g 103 (200)
T 3pge_A 26 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIG 103 (200)
T ss_dssp CCCCEEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECCSC
T ss_pred CCCeEEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEeccCc
Confidence 366799999888999999999999999999999999999999999999999998 999999999999999999988754
No 189
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.40 E-value=1.6e-06 Score=77.90 Aligned_cols=76 Identities=11% Similarity=0.178 Sum_probs=69.5
Q ss_pred ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
.+-+.|.|+ .+|+...+.|.+++++..|+...+++.|++ +.++|++|+|++|.++.|..++++.+|++|+++....
T Consensus 27 ~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~--~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~ 102 (200)
T 3pge_A 27 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 102 (200)
T ss_dssp CCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSC--GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCS
T ss_pred CCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCC--hhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccC
Confidence 345667776 488999999999999999999999999999 9999999999999999999999999999999988763
No 190
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.39 E-value=7.4e-07 Score=79.36 Aligned_cols=79 Identities=13% Similarity=0.207 Sum_probs=74.1
Q ss_pred CCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccccc
Q 019968 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ 110 (333)
Q Consensus 31 ~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~m 110 (333)
...|+|.|..+|+.+.+.|.+++++..|+...+++.|+++.+++++|+|+.|. ++.|..++++.+|++|++.....++.
T Consensus 55 ~e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~-~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 55 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQ-ADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp CCEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECC-SSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred CCcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecC-CCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 56788888878999999999999999999999999999999999999999998 99999999999999999999887663
No 191
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.34 E-value=1.6e-06 Score=71.38 Aligned_cols=75 Identities=17% Similarity=0.317 Sum_probs=68.5
Q ss_pred CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
...|+|.|+ .+|+.+.+.|.+++++..|+...+++.|+++.+++++|+|+.|. ++.|..++++.+|++|.+....
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~-~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECC-TTCCTTTTTCCTTCEEEEEECC
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECC-CCCCHHHcCCCCCCEEEEEeec
Confidence 457888885 67888999999999999999999999999999999999999998 9999999999999999987653
No 192
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.18 E-value=3.8e-06 Score=74.83 Aligned_cols=77 Identities=12% Similarity=0.189 Sum_probs=69.7
Q ss_pred ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC
Q 019968 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (333)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~ 186 (333)
.+.+.|.|+ .+|+.+.+.|.+++++..|+...+++.|++ +.+++++|+|+.|.++.|..++++.+|++|+++.....
T Consensus 55 ~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~--~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~G 131 (207)
T 3tix_A 55 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIG 131 (207)
T ss_dssp CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCC--GGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCT
T ss_pred CCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCC--cccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 344667775 488999999999999999999999999999 99999999999999999999999999999999887653
No 193
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.09 E-value=2.1e-06 Score=66.02 Aligned_cols=71 Identities=15% Similarity=0.234 Sum_probs=60.0
Q ss_pred CcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCee-----cccCCccccccccccccceeee
Q 019968 32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE-----LARSNSRVRDYGLADGNVLHLV 103 (333)
Q Consensus 32 ~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~-----L~~D~~tL~dygI~~gstV~Lv 103 (333)
+.|.|.|+....++.+++++++|+.+|+.+|++.++++++.|.++++-.+ +. .+.+|+++||++|++|++.
T Consensus 3 ~~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~-~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITAS-SSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSC-CCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCC-CCCCHHHcCCCCCCEEEEe
Confidence 35888887666788899999999999999999999999999888765544 33 6789999999999999875
No 194
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.02 E-value=7.1e-07 Score=80.49 Aligned_cols=80 Identities=11% Similarity=0.203 Sum_probs=0.9
Q ss_pred CCCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 30 ~~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
..+.|+|.|..+|+...+.|.+++++..|+...+++.|+++++++++|+|+.|. ++.|..++++.+|++|+++....++
T Consensus 18 p~e~InLKV~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~-dddTPadL~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIGG 96 (227)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CCCeEEEEEeCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecC-CCCCHHHcCCCCCCEEEEEecccCC
Confidence 466888888778899999999999999999999999999999999999999998 9999999999999999998877665
Q ss_pred c
Q 019968 110 Q 110 (333)
Q Consensus 110 m 110 (333)
.
T Consensus 97 ~ 97 (227)
T 3v7o_A 97 L 97 (227)
T ss_dssp C
T ss_pred c
Confidence 3
No 195
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.01 E-value=2e-05 Score=62.50 Aligned_cols=66 Identities=21% Similarity=0.222 Sum_probs=52.3
Q ss_pred eeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeec--CCCCcccccCC-CCCCEEEEEee
Q 019968 116 TVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEEL--EDQRLITDICK-RNEAVIHLLVR 183 (333)
Q Consensus 116 t~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~L--eD~~tL~dy~I-~~gsvIhLv~r 183 (333)
...+..+.+.+.+.+||..+|++|++++|+| +.+|+|+|.|+.| +.++.-..|-- ...+-|.|+.+
T Consensus 20 ~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp--~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~ 88 (94)
T 4efo_A 20 LQQMTAHKIYIHSYNTATIFHELVYKQTKII--SSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSL 88 (94)
T ss_dssp TTTTEEEEEEEETTCBHHHHHHHHHHHHCCC--GGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEEC
T ss_pred cccceEEEEEeccchHHHHHHHHHHHHhCCC--HHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEec
Confidence 3456788999999999999999999999999 9999999999876 55666666654 34455555443
No 196
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.96 E-value=2.8e-05 Score=61.74 Aligned_cols=50 Identities=16% Similarity=0.267 Sum_probs=44.3
Q ss_pred EEEEE-E-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecc
Q 019968 34 ILIFL-S-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELA 83 (333)
Q Consensus 34 M~I~V-t-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~ 83 (333)
.-|+| . .++..+.+.+.+.+||..||.+|++++|||+.+|+|+|.|+.|.
T Consensus 13 kvvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 13 MVIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp EEEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred eeEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence 45566 3 46788999999999999999999999999999999999998765
No 197
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.91 E-value=7e-05 Score=57.29 Aligned_cols=70 Identities=9% Similarity=0.123 Sum_probs=62.3
Q ss_pred ceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCC-ceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLK-NQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (333)
Q Consensus 111 ~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~-~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~ 182 (333)
.+.++......+.+.|.++.+|..|-..-+.+.|++ ++ ..+|+|.|..|+.+.++.||.+.+|+.|.+++
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~--~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKIS--FHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCC--CCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCC--cCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 345566556678999999999999999999999999 77 89999999999999999999999999999875
No 198
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.90 E-value=6.3e-06 Score=63.36 Aligned_cols=70 Identities=10% Similarity=0.094 Sum_probs=57.7
Q ss_pred ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCee---c--CCCCcccccCCCCCCEEEEE
Q 019968 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE---L--EDQRLITDICKRNEAVIHLL 181 (333)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~---L--eD~~tL~dy~I~~gsvIhLv 181 (333)
.|.|-|++.+| ++.+++++++|+.+|+.+|++..+++ ++.|.+.++... | .++.+|+++|++.|+.|++.
T Consensus 4 ~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~--~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 4 SIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQ--NNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCC--TTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred cEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCC--CCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 47788888877 67788999999999999999999998 777777654433 3 47789999999999999873
No 199
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.88 E-value=0.00072 Score=65.19 Aligned_cols=142 Identities=15% Similarity=0.149 Sum_probs=106.3
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhC----CCCcceEEEE------CCeecccCCccccccccccccceeee
Q 019968 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNG----FFVKKQKLVF------EGRELARSNSRVRDYGLADGNVLHLV 103 (333)
Q Consensus 34 M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~g----ip~~~Q~Lif------~G~~L~~D~~tL~dygI~~gstV~Lv 103 (333)
+.+.|.+.+.+.++.++|+.||.++-.+|.++.. .+.+..-|+. .|+=|. ++++|..|++++|+.++..
T Consensus 4 ~~~~~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~-~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 4 LSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLE-AGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECC-TTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEecc-CCCCHHHhCCCCCceeecc
Confidence 4455555588899999999999999999988764 3566777876 244487 7889999999999988776
Q ss_pred eecccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECC---------eecCCCCcccccCCCC
Q 019968 104 LRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG---------EELEDQRLITDICKRN 174 (333)
Q Consensus 104 ~rlsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~G---------k~LeD~~tL~dy~I~~ 174 (333)
.+. +.+.|..++|....+.|+++.|+.++=..|....|+. +.+.--|.+.. ..|+..+++.+.+...
T Consensus 83 ~~~---~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~-e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~ 158 (371)
T 3ivf_A 83 KKQ---RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGIT-NHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEE 158 (371)
T ss_dssp ECE---EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCS-CGGGEEEECCC----------CCCTTSBTGGGTCCT
T ss_pred Cce---eEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCC-CccccEEEEEecccccchHHHHHhcCchhHhhCCCC
Confidence 543 5688899999999999999999999999999999977 25555665532 2234455566555544
Q ss_pred CCEEEE
Q 019968 175 EAVIHL 180 (333)
Q Consensus 175 gsvIhL 180 (333)
...+++
T Consensus 159 ~~~l~f 164 (371)
T 3ivf_A 159 HETLLL 164 (371)
T ss_dssp TCEEEE
T ss_pred CceEEE
Confidence 444443
No 200
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.87 E-value=1.9e-06 Score=77.75 Aligned_cols=78 Identities=10% Similarity=0.175 Sum_probs=0.0
Q ss_pred ecccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968 105 RLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 105 rlsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~ 184 (333)
.+.+.|.|.| +.+|+.+.+.|.+++.+..|+...+++.|++ +.++|++|+|+.+.++.|..++++++|++|+++...
T Consensus 17 ~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs--~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ 93 (227)
T 3v7o_A 17 KPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCC--ccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecc
Confidence 3455688888 7789999999999999999999999999999 999999999999999999999999999999998775
Q ss_pred C
Q 019968 185 S 185 (333)
Q Consensus 185 ~ 185 (333)
.
T Consensus 94 ~ 94 (227)
T 3v7o_A 94 I 94 (227)
T ss_dssp -
T ss_pred c
Confidence 4
No 201
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.73 E-value=0.00015 Score=55.45 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=62.0
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCc-ceEEEECCeecccCCccccccccccccceeeee
Q 019968 34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVK-KQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~-~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
+.+.++ .....+.+.|.++.||..|-..-+.+.|++++ ..+|.|.|..|. .+.++++|++.+|+.|.+++
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLd-p~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLD-PNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECC-TTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccC-ccCChhhhCCcCCceeeeee
Confidence 444554 34567899999999999999999999999999 999999999998 99999999999999998764
No 202
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.64 E-value=0.00059 Score=61.26 Aligned_cols=79 Identities=10% Similarity=0.187 Sum_probs=69.8
Q ss_pred ecccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968 105 RLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 105 rlsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~ 184 (333)
...+.+.|.|++ +|+.+.+++.+++....|+...+++.|++ +.+++++|+|+.+.++.|..+....++++|++....
T Consensus 17 ~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~--~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq 93 (209)
T 3uf8_A 17 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (209)
T ss_dssp -CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSC
T ss_pred CCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCC--hheEEEEECCEeccCCCChHHhhhcccccchhhccc
Confidence 344556677766 77888999999999999999999999999 999999999999999999999999999999998775
Q ss_pred CC
Q 019968 185 SA 186 (333)
Q Consensus 185 ~~ 186 (333)
..
T Consensus 94 ~G 95 (209)
T 3uf8_A 94 IG 95 (209)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 203
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.64 E-value=0.00036 Score=62.66 Aligned_cols=180 Identities=13% Similarity=0.123 Sum_probs=116.5
Q ss_pred CCCCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 29 LSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 29 ~~~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
.+.+.++|.|.-+|+...+.|..++++..|+...+++.|+++++++++|.|+.+. ++.+-.+..+.++++|.+.....+
T Consensus 17 ~~~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~-~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 17 KPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp -CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECC-TTCCTTTTTCCTTEEEEEECSCTT
T ss_pred CCCCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEecc-CCCChHHhhhcccccchhhccccc
Confidence 3467899999657888999999999999999999999999999999999999998 999999999999999999988877
Q ss_pred ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC---
Q 019968 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS--- 185 (333)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~--- 185 (333)
+.. ++.+.+|=.+.+-...+-.. .. .-+.-.+-|.|+. .|+..+.+ ....+..+.+.+...
T Consensus 96 g~t-~~~~~sGl~~~vl~~G~G~~------------~~-~gd~V~v~Y~g~l-~dG~~fds-s~~~~~P~~f~lG~g~vi 159 (209)
T 3uf8_A 96 GST-VVTTESGLKYEDLTEGSGAE------------AR-AGQTVSVHYTGWL-TDGQKFDS-SKDRNDPFAFVLGGGMVI 159 (209)
T ss_dssp CCC-CEECTTSCEEEEEECCCSCB------------CC-TTCEEEEEEEEEE-TTSCEEEE-SGGGTCCEEEETTSSSSC
T ss_pred ccc-ccCCCCceEEEEEEcCCCCc------------CC-CCCEEEEEEEEEE-CCCCEEEE-ccccCCCEEEEeCCCccc
Confidence 653 33355553333222221100 01 0122344477764 45544433 222333444443321
Q ss_pred ----CccccccCCceEEEEEeeccccc-cCCCC-CCCCceEEEeece
Q 019968 186 ----AKVRAKPVQKDFEVSIEATELNE-KGADV-VGEHQFETLFMGY 226 (333)
Q Consensus 186 ----~~v~t~~~gk~~~l~v~~~d~~~-~~~~g-i~~~~q~Lif~Gk 226 (333)
..+.....|...++.+.+...=. .+..+ ||+. .-|+|.=+
T Consensus 160 ~G~eeaL~gM~~Ge~~~v~Ipp~~aYG~~g~~~~IP~~-s~LvF~Ve 205 (209)
T 3uf8_A 160 KGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPPN-ATLVFEVE 205 (209)
T ss_dssp HHHHHHHTTCBTTCEEEEEECGGGTTTTTCBTTTBCTT-CCEEEEEE
T ss_pred hhHHHHHhCCCCCCEEEEEECcHHhCCCCCCCCCcCCC-CeEEEEEE
Confidence 12445556888999776544422 22222 4443 45666533
No 204
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.49 E-value=0.00055 Score=54.52 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=64.3
Q ss_pred cccceeEeeeCCc-EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 019968 108 DLQAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (333)
Q Consensus 108 d~m~I~Vkt~~Gk-~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv 181 (333)
..+.|.|+..+|+ .+.+.|.++++...|...-+++.|++ +..-+++|+|..|..+.|..++++.+|++|.+.
T Consensus 24 ~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~--~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 24 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLS--GRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCS--SSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 4456667777784 78999999999999999999999998 899999999999999999999999999999874
No 205
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.43 E-value=2e-05 Score=76.43 Aligned_cols=82 Identities=11% Similarity=0.187 Sum_probs=2.3
Q ss_pred CCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccccc
Q 019968 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ 110 (333)
Q Consensus 31 ~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~m 110 (333)
...++|.|+-+|+...+.|..++++..|+...+++.|++++++++.|+|+.|. ++.|.+++++.+|++|.+.....++|
T Consensus 19 ~~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~-~~~TP~~L~MEDgD~Idv~~~Q~g~~ 97 (360)
T 3ix6_A 19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIGGM 97 (360)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CCeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECC-CCCChHHcCCCccchhhhhhccCchH
Confidence 45788888557888999999999999999999999999999999999999998 99999999999999999999988776
Q ss_pred cee
Q 019968 111 AIT 113 (333)
Q Consensus 111 ~I~ 113 (333)
+.+
T Consensus 98 ~~Y 100 (360)
T 3ix6_A 98 RTY 100 (360)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 206
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.40 E-value=0.00071 Score=53.85 Aligned_cols=73 Identities=11% Similarity=0.292 Sum_probs=65.5
Q ss_pred CCCcEEEEEE-eCC-eEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeee
Q 019968 30 SNDSILIFLS-VGG-SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (333)
Q Consensus 30 ~~~~M~I~Vt-~~G-~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv 103 (333)
..+.++|.|. .+| ..+.+.|.+++++..|...-+++.|+++..-+++|+|..|. .+.|..++++.+|++|.+.
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~-~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLS-GRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECC-SCSCHHHHTCCTTEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEe
Confidence 3567888885 567 48999999999999999999999999999999999999998 8999999999999998764
No 207
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.26 E-value=0.0019 Score=51.13 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=69.0
Q ss_pred CCCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeee
Q 019968 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (333)
Q Consensus 30 ~~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~r 105 (333)
..+.++|.|+-.|....+.|..++....|...-+.+.|++++.-++.|+|..+. ++.|-.+.++.+|++|.+.+-
T Consensus 18 ~~~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~-~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 18 TPRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELS-PTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp CCCCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECC-TTSCHHHHTCCSSCEEEEEEC
T ss_pred CCCeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCC-CCCCHhHcCCCCCCEEEEEEe
Confidence 355688888878899999999999999999999999999999999999999998 999999999999999988753
No 208
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.23 E-value=0.001 Score=52.28 Aligned_cols=76 Identities=12% Similarity=0.013 Sum_probs=68.3
Q ss_pred ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~ 184 (333)
..+|.+.|-..+|+..++.|.|+.++.++-+.-.+++|+. +++..|.|+++.|+-.-.++-.|+.+|+.+.|+...
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~--~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN--PSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC--GGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCC--hhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence 3568899988999999999999999999999999999998 899999999999988999999999999999998664
No 209
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.19 E-value=0.00044 Score=57.78 Aligned_cols=70 Identities=14% Similarity=0.128 Sum_probs=57.1
Q ss_pred ceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCC-----------------------------------ceEEE
Q 019968 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLK-----------------------------------NQELI 155 (333)
Q Consensus 111 ~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~-----------------------------------~QrLi 155 (333)
.+.|++++|...++.|+.+.+|.+++..|+.+.|++.+.+ .|+|-
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 4788999999999999999999999999999999883211 34442
Q ss_pred E--CCeecCCCCcccccCCCCCCEEEE
Q 019968 156 C--DGEELEDQRLITDICKRNEAVIHL 180 (333)
Q Consensus 156 f--~Gk~LeD~~tL~dy~I~~gsvIhL 180 (333)
. .+..|+++++|.++||.+++++-|
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllL 119 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLL 119 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEE
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEE
Confidence 2 236678899999999999999665
No 210
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.10 E-value=0.00064 Score=53.37 Aligned_cols=75 Identities=16% Similarity=0.102 Sum_probs=66.5
Q ss_pred CCcEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 31 ~~~M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
...|.|.| ..+++...+.|.|+.|+.++-...++++|+.+++..|.|+++.|+ -...+.-.|+.+|+.+.|+...
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lD-LSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLD-LSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEES-SSCBHHHHCCCSSCEEEEECSS
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEecc-ccceeEecCCCCCCEEEEEEcc
Confidence 44677888 478899999999999999999999999999999999999999997 8899999999999999998654
No 211
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.09 E-value=7.8e-05 Score=72.31 Aligned_cols=78 Identities=10% Similarity=0.187 Sum_probs=0.0
Q ss_pred ecccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968 105 RLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 105 rlsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~ 184 (333)
.+...+.|.|++ .|+...+.|.++++...|+...+++.|++ +++++++|+|+.+.++.|.+++++++|++|+++...
T Consensus 17 ~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~--~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q 93 (360)
T 3ix6_A 17 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCC--cceEEEEECCeECCCCCChHHcCCCccchhhhhhcc
Confidence 344556777776 67889999999999999999999999999 999999999999999999999999999999999875
Q ss_pred C
Q 019968 185 S 185 (333)
Q Consensus 185 ~ 185 (333)
.
T Consensus 94 ~ 94 (360)
T 3ix6_A 94 I 94 (360)
T ss_dssp -
T ss_pred C
Confidence 4
No 212
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.01 E-value=0.0001 Score=71.85 Aligned_cols=83 Identities=11% Similarity=0.209 Sum_probs=0.0
Q ss_pred CCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccccc
Q 019968 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ 110 (333)
Q Consensus 31 ~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~m 110 (333)
...+.|.|.-+|....+.|..+++...|+...+++.|+++.++++.|+|+.|. ++.|-.++++.+|++|.+.....++.
T Consensus 28 ~~~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~-~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 28 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEeeeeecccccc
Confidence 45667777447788899999999999999999999999999999999999998 99999999999999999998876654
Q ss_pred ceeE
Q 019968 111 AITV 114 (333)
Q Consensus 111 ~I~V 114 (333)
..++
T Consensus 107 n~~~ 110 (389)
T 4da1_A 107 NLYF 110 (389)
T ss_dssp ----
T ss_pred ccce
Confidence 4443
No 213
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=96.91 E-value=0.0048 Score=48.84 Aligned_cols=73 Identities=11% Similarity=0.052 Sum_probs=65.7
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
+.|-|+ ..|....+.+..++....|..--+++.|+. +..-+++|+|..+.++.|-.+.+++++++|..++.++
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~--~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~~ 94 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVS--PSRILLLFGETELSPTATPRTLKLGVADIIDCVVLTS 94 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSC--GGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECCC
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCC--hhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEecC
Confidence 556666 368899999999999999999999999999 9999999999999999999999999999999877543
No 214
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=96.82 E-value=0.0028 Score=48.83 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=58.0
Q ss_pred CcEEEEEEe---CCeEEEEEecCCCCHHHHHHHHHHhhCCCCc-----ceEEEECCeecccCCccccccccccccceee
Q 019968 32 DSILIFLSV---GGSVIPMRVMESDSIASVKLRIQSYNGFFVK-----KQKLVFEGRELARSNSRVRDYGLADGNVLHL 102 (333)
Q Consensus 32 ~~M~I~Vt~---~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~-----~Q~Lif~G~~L~~D~~tL~dygI~~gstV~L 102 (333)
..++|++.+ .++.+.+++....||..|+..+.+..+++.. ..++.-.|..|. ++..|++|+|.+|+.+.+
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~-~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFS-GECKLSDCGITNGDRLEI 80 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEE-TTSBTGGGTCCTTCEEEE
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEc-CCCEEeeCCcCCCCEEEE
Confidence 456666654 7899999999999999999999999888642 334556788898 999999999999998764
No 215
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.73 E-value=0.0014 Score=54.74 Aligned_cols=70 Identities=23% Similarity=0.277 Sum_probs=56.6
Q ss_pred EEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCc-------------------------------------ceEEE
Q 019968 35 LIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVK-------------------------------------KQKLV 76 (333)
Q Consensus 35 ~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~-------------------------------------~Q~Li 76 (333)
.+.|+ ++|...++.|+.+.||.+++..|+.+.|++.. +|+|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 56775 78999999999999999999999999999854 34442
Q ss_pred E--CCeecccCCccccccccccccceeeeee
Q 019968 77 F--EGRELARSNSRVRDYGLADGNVLHLVLR 105 (333)
Q Consensus 77 f--~G~~L~~D~~tL~dygI~~gstV~Lv~r 105 (333)
. .+.-|+ ++++|.++||.++++|.|.-+
T Consensus 93 ~dd~~~WLD-~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLD-HGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEEC-SSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCccc-CCCcHHHcCCCCCCEEEEEEE
Confidence 2 124465 899999999999999877654
No 216
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=96.48 E-value=0.00044 Score=67.35 Aligned_cols=75 Identities=11% Similarity=0.193 Sum_probs=0.0
Q ss_pred cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~ 185 (333)
+.+.|.|++ +|+...+.|.++++...|+...+++.|++ +.++++.|+|+.+.++.|..++++.+|++|+++....
T Consensus 29 ~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~--~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~ 103 (389)
T 4da1_A 29 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQI 103 (389)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccc
Confidence 345566666 67788899999999999999999999999 9999999999999999999999999999999987653
No 217
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=96.30 E-value=0.012 Score=45.24 Aligned_cols=64 Identities=11% Similarity=0.093 Sum_probs=53.6
Q ss_pred eCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCC---ceEEEECCeecCCCCcccccCCCCCCEEEE
Q 019968 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLK---NQELICDGEELEDQRLITDICKRNEAVIHL 180 (333)
Q Consensus 117 ~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~---~QrLif~Gk~LeD~~tL~dy~I~~gsvIhL 180 (333)
-.++.+-+++....||..|+..+.+..+++.+.. +-|+.-.|..|.++++|+||+|.+|+.|.+
T Consensus 14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 3688999999999999999999999998763222 345556778889999999999999999875
No 218
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.19 E-value=0.017 Score=44.01 Aligned_cols=69 Identities=10% Similarity=0.128 Sum_probs=57.6
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE--ECCeec---CCCCcccccCCCCCCEEEEE
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEEL---EDQRLITDICKRNEAVIHLL 181 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi--f~Gk~L---eD~~tL~dy~I~~gsvIhLv 181 (333)
..|.||..+|+.+.-....++||.+|..-|.. .+.+ .....|+ |-.+.+ +.+.||.+.|+.++++|.+-
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~--~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFP--WDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCC--TTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCC--CCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 45778889998888889999999999999988 5555 7788888 567888 34789999999999998874
No 219
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=95.94 E-value=0.042 Score=41.79 Aligned_cols=73 Identities=21% Similarity=0.259 Sum_probs=60.1
Q ss_pred CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE--ECCeecc--cCCccccccccccccceeeee
Q 019968 31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA--RSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li--f~G~~L~--~D~~tL~dygI~~gstV~Lv~ 104 (333)
....+|-|+ .+|+.+.-....++||.+|..-|.. .+.+.....|+ |-.+.|. +.+.+|.+.|+.++++|.+..
T Consensus 5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 446778887 5788888899999999999999998 57777788887 5567784 467899999999999988754
No 220
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=95.73 E-value=0.067 Score=42.98 Aligned_cols=76 Identities=17% Similarity=0.143 Sum_probs=62.7
Q ss_pred CCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE--ECCeecc--cCCccccccccccccceeeee
Q 019968 30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA--RSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 30 ~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li--f~G~~L~--~D~~tL~dygI~~gstV~Lv~ 104 (333)
.....+|-|+ .+|..+.-....++||.+|..-|....+.+.....|+ |-.+.+. +.+.+|.+.|+.+.++|++..
T Consensus 10 ~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 10 RSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 3556888887 5889999999999999999999999988776777776 4567776 357899999999999988776
Q ss_pred e
Q 019968 105 R 105 (333)
Q Consensus 105 r 105 (333)
.
T Consensus 90 ~ 90 (109)
T 2dzk_A 90 A 90 (109)
T ss_dssp C
T ss_pred C
Confidence 4
No 221
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=95.47 E-value=0.11 Score=42.64 Aligned_cols=73 Identities=16% Similarity=0.265 Sum_probs=60.6
Q ss_pred CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE--ECCeec--ccCCccccccccccccceeeee
Q 019968 31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGREL--ARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li--f~G~~L--~~D~~tL~dygI~~gstV~Lv~ 104 (333)
....+|-|+ .+|..+.-....++||.+|..-|... +.+.....|+ |-.+.| .+.+.+|.+.|+.+.++|++..
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 556888887 57889999999999999999999887 7777777887 567888 4357999999999988887754
No 222
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=95.37 E-value=0.06 Score=44.34 Aligned_cols=71 Identities=10% Similarity=0.042 Sum_probs=59.6
Q ss_pred cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE--ECCeec--CC-CCcccccCCCCCCEEEEE
Q 019968 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEEL--ED-QRLITDICKRNEAVIHLL 181 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi--f~Gk~L--eD-~~tL~dy~I~~gsvIhLv 181 (333)
+...|.||..+|+.+.-....++||.+|..-|... +.+ .....|+ |-.+.| +| +.||.+.++.+.++|++.
T Consensus 42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~--~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYP--NERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCC--TTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCC--CCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 45778899999999999999999999999999887 665 6777787 568888 34 789999999998888874
No 223
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.19 E-value=0.082 Score=42.91 Aligned_cols=65 Identities=15% Similarity=0.092 Sum_probs=46.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHHh--cCCCC----CCCceEEEE----CCeecCCC-------------CcccccCCCCC
Q 019968 119 GKVFEFHVERGRNVGYVKQQIAKK--GREFV----DLKNQELIC----DGEELEDQ-------------RLITDICKRNE 175 (333)
Q Consensus 119 Gk~~~l~V~~sdTV~~LK~~I~~~--~Gip~----~~~~QrLif----~Gk~LeD~-------------~tL~dy~I~~g 175 (333)
+..+++.|-..|||..+|++|-+. .|.|. .++...|-+ .|+.|.|. +||+.|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 456889999999999999999885 35552 245666776 35666441 57899999999
Q ss_pred CEEEEEee
Q 019968 176 AVIHLLVR 183 (333)
Q Consensus 176 svIhLv~r 183 (333)
+++-|+-+
T Consensus 103 atl~l~~~ 110 (111)
T 4e71_A 103 ATLILSKV 110 (111)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99988643
No 224
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=94.86 E-value=0.14 Score=49.03 Aligned_cols=87 Identities=15% Similarity=0.077 Sum_probs=66.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHHhcCC--CCCCCceEEEE------CCeecCCCCcccccCCCCCCEEEEEeec-CCccc
Q 019968 119 GKVFEFHVERGRNVGYVKQQIAKKGRE--FVDLKNQELIC------DGEELEDQRLITDICKRNEAVIHLLVRK-SAKVR 189 (333)
Q Consensus 119 Gk~~~l~V~~sdTV~~LK~~I~~~~Gi--p~~~~~QrLif------~Gk~LeD~~tL~dy~I~~gsvIhLv~r~-~~~v~ 189 (333)
+-+.++.++++.||.++-.+|.++..- +.+.++.-|.. .|+-|++.++|..|++++|+.|+..-+. ..+|+
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~~~~~~V~ 91 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQRPLKIR 91 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEECEEEEEEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCceeEEEEE
Confidence 667899999999999999999998642 22377888887 5677999999999999999999885442 23454
Q ss_pred cccCCceEEEEEeeccc
Q 019968 190 AKPVQKDFEVSIEATEL 206 (333)
Q Consensus 190 t~~~gk~~~l~v~~~d~ 206 (333)
... |...++.++++.+
T Consensus 92 l~d-g~~~~~~vd~~tt 107 (371)
T 3ivf_A 92 MLD-GTVKTIMVDDSKT 107 (371)
T ss_dssp CTT-SCEEEEEEETTSB
T ss_pred CcC-CCEEEEEECCCCC
Confidence 444 6677777776655
No 225
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=94.82 E-value=0.09 Score=42.19 Aligned_cols=73 Identities=19% Similarity=0.155 Sum_probs=60.1
Q ss_pred ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE--ECCeecC--C-CCcccccCCCCCCEEEEEee
Q 019968 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE--D-QRLITDICKRNEAVIHLLVR 183 (333)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi--f~Gk~Le--D-~~tL~dy~I~~gsvIhLv~r 183 (333)
...|.||..+|+.+.-....++||.+|..-|....+.+ .....|+ |-.+.+. | +.||.+.|+.+.++|++...
T Consensus 13 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~--~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 13 IARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNT--YGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp CEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTS--SCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCC--CCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 35678899999988999999999999999999987655 5666776 5677785 3 78999999999988888654
No 226
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.73 E-value=0.082 Score=44.42 Aligned_cols=77 Identities=18% Similarity=0.358 Sum_probs=53.7
Q ss_pred CCcEEEEEE-eC------CeEEEEEecCCCCHHHHHHHHHHh--hCCCCc------ceEEEE----CCee-cccCC----
Q 019968 31 NDSILIFLS-VG------GSVIPMRVMESDSIASVKLRIQSY--NGFFVK------KQKLVF----EGRE-LARSN---- 86 (333)
Q Consensus 31 ~~~M~I~Vt-~~------G~~~~i~V~~sdTV~~LK~kI~~~--~gip~~------~Q~Lif----~G~~-L~~D~---- 86 (333)
..+|.|+|. .. ...+++.|...|||.++|.||-.. .|+|.+ ..-|-+ .|+. |. |.
T Consensus 22 y~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~-D~D~tS 100 (138)
T 2r2o_A 22 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILS-DEDVTS 100 (138)
T ss_dssp CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEEC-SSSTTC
T ss_pred eEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEee-ccCCcc
Confidence 557888883 21 256899999999999999999885 556543 233443 2433 55 32
Q ss_pred ---------ccccccccccccceeeeeeccc
Q 019968 87 ---------SRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 87 ---------~tL~dygI~~gstV~Lv~rlsd 108 (333)
.||+.|+|.+|+++-|+.+.+.
T Consensus 101 ~~~~~wkrLNTL~HY~V~Dga~l~l~~~~~~ 131 (138)
T 2r2o_A 101 EVQGLWRRLNTLQHYKVPDGATVALVPCLTK 131 (138)
T ss_dssp CEETTEEECCBHHHHTCCTTCEEEEEEC---
T ss_pred cccCCceeecchhccCCCCCCEEEEEECCCc
Confidence 2899999999999999887654
No 227
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.16 E-value=0.15 Score=41.28 Aligned_cols=75 Identities=24% Similarity=0.354 Sum_probs=51.1
Q ss_pred CCcEEEEEEe---CCeEEEEEecCCCCHHHHHHHHHHh--hCCCCc------ceEEEE----CCeecccCC---------
Q 019968 31 NDSILIFLSV---GGSVIPMRVMESDSIASVKLRIQSY--NGFFVK------KQKLVF----EGRELARSN--------- 86 (333)
Q Consensus 31 ~~~M~I~Vt~---~G~~~~i~V~~sdTV~~LK~kI~~~--~gip~~------~Q~Lif----~G~~L~~D~--------- 86 (333)
..+|.++|.. .+..+++.|...|||.++|.||-.. .|+|.+ ...|-+ .|+.|.+.+
T Consensus 9 ~~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~w 88 (111)
T 4e71_A 9 YAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRW 88 (111)
T ss_dssp CCEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---C
T ss_pred eEEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcc
Confidence 4577788742 3466889999999999999999875 455544 444654 245565211
Q ss_pred ---ccccccccccccceeeeee
Q 019968 87 ---SRVRDYGLADGNVLHLVLR 105 (333)
Q Consensus 87 ---~tL~dygI~~gstV~Lv~r 105 (333)
.||+.|+|.+|+++-|+.+
T Consensus 89 krLNTL~HY~V~dgatl~l~~~ 110 (111)
T 4e71_A 89 KRVNTLMHYNVRDGATLILSKV 110 (111)
T ss_dssp CCCCBHHHHTCCTTCEEEEEEC
T ss_pred eEecchhhcCCCCCCEEEEEeC
Confidence 3789999999999988654
No 228
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=93.98 E-value=0.23 Score=39.71 Aligned_cols=80 Identities=20% Similarity=0.316 Sum_probs=61.5
Q ss_pred CCCCCCCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE--ECCeecc-cCCccccccccccccce
Q 019968 25 RPEKLSNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA-RSNSRVRDYGLADGNVL 100 (333)
Q Consensus 25 ~~~~~~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li--f~G~~L~-~D~~tL~dygI~~gstV 100 (333)
+|........+|-|+ .+|+.+.-....++||.+|..-|... +.......|+ |-.+.|. +.+.||.+.|+.+.++|
T Consensus 15 EP~~~~~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L 93 (109)
T 2cr5_A 15 EPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVL 93 (109)
T ss_dssp CCCSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEE
T ss_pred CCCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEE
Confidence 333333457888887 57888889999999999999999965 5555667776 5577786 35789999999999998
Q ss_pred eeeee
Q 019968 101 HLVLR 105 (333)
Q Consensus 101 ~Lv~r 105 (333)
.+..+
T Consensus 94 ~Ve~~ 98 (109)
T 2cr5_A 94 NVEEK 98 (109)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 77543
No 229
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=93.96 E-value=0.31 Score=40.32 Aligned_cols=67 Identities=10% Similarity=0.034 Sum_probs=50.1
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHh--cCCCC----CCCceEEEE----CCee-cCCC-------------CcccccCCC
Q 019968 118 CGKVFEFHVERGRNVGYVKQQIAKK--GREFV----DLKNQELIC----DGEE-LEDQ-------------RLITDICKR 173 (333)
Q Consensus 118 ~Gk~~~l~V~~sdTV~~LK~~I~~~--~Gip~----~~~~QrLif----~Gk~-LeD~-------------~tL~dy~I~ 173 (333)
++..+++.|-..|||.++|++|-+. .+.|. .+++..|.+ .|+. |.|. +||+.|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 3456889999999999999999885 35553 246777876 3443 5431 578999999
Q ss_pred CCCEEEEEeec
Q 019968 174 NEAVIHLLVRK 184 (333)
Q Consensus 174 ~gsvIhLv~r~ 184 (333)
+|+++-|+.+.
T Consensus 95 dgatv~l~~~~ 105 (127)
T 3h6n_A 95 EGASLAMSLID 105 (127)
T ss_dssp TTCEEEEEECC
T ss_pred CCCEEEEEEcc
Confidence 99999997654
No 230
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=93.88 E-value=0.22 Score=40.69 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=48.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHHh--cCCCC----CCCceEEEE-CC---ee-cCC--C-----------CcccccCCCC
Q 019968 119 GKVFEFHVERGRNVGYVKQQIAKK--GREFV----DLKNQELIC-DG---EE-LED--Q-----------RLITDICKRN 174 (333)
Q Consensus 119 Gk~~~l~V~~sdTV~~LK~~I~~~--~Gip~----~~~~QrLif-~G---k~-LeD--~-----------~tL~dy~I~~ 174 (333)
...+++.|-..|||..+|++|-+. .|.|. .+++..|.+ .| +. |.| . +||+.|+|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 345888999999999999999885 35553 245667776 33 32 433 1 5789999999
Q ss_pred CCEEEEEeec
Q 019968 175 EAVIHLLVRK 184 (333)
Q Consensus 175 gsvIhLv~r~ 184 (333)
|+++-|+-+.
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999997764
No 231
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=93.80 E-value=0.4 Score=43.28 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=54.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCCCCc-ceEEEE-C----CeecccCCccccccccccccceeeeeecccc
Q 019968 44 VIPMRVMESDSIASVKLRIQSYNGFFVK-KQKLVF-E----GRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 44 ~~~i~V~~sdTV~~LK~kI~~~~gip~~-~Q~Lif-~----G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
.+++.++..+||.+|+.++...++++.+ .-||.. . ...|.+.+.+|.++++.+|..|.+-++..|+
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 3567789999999999999999999987 577753 3 2457645799999999999999988886654
No 232
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=93.60 E-value=0.36 Score=40.53 Aligned_cols=66 Identities=12% Similarity=0.113 Sum_probs=48.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHhc--CCCC----CCCceEEEE----CCee-cCCC-------------CcccccCCCCC
Q 019968 120 KVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC----DGEE-LEDQ-------------RLITDICKRNE 175 (333)
Q Consensus 120 k~~~l~V~~sdTV~~LK~~I~~~~--Gip~----~~~~QrLif----~Gk~-LeD~-------------~tL~dy~I~~g 175 (333)
..+++.|-..|||.++|+||-+.. |.|. .+++.-|.+ +|+. |.|. +||+.|+|.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 568899999999999999998863 5552 234456665 3443 5442 48999999999
Q ss_pred CEEEEEeecC
Q 019968 176 AVIHLLVRKS 185 (333)
Q Consensus 176 svIhLv~r~~ 185 (333)
+++-|+-+.+
T Consensus 121 a~l~l~~~~~ 130 (138)
T 2r2o_A 121 ATVALVPCLT 130 (138)
T ss_dssp CEEEEEEC--
T ss_pred CEEEEEECCC
Confidence 9999987754
No 233
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=93.36 E-value=0.29 Score=43.76 Aligned_cols=66 Identities=23% Similarity=0.369 Sum_probs=53.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCCCCc-ceEEE--E-CC--eecccCCccccccccccccceeeeeecccc
Q 019968 44 VIPMRVMESDSIASVKLRIQSYNGFFVK-KQKLV--F-EG--RELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 44 ~~~i~V~~sdTV~~LK~kI~~~~gip~~-~Q~Li--f-~G--~~L~~D~~tL~dygI~~gstV~Lv~rlsd~ 109 (333)
.+++.++..+||.+|+.++...++++.+ .-||. + .+ ..|.+.+.+|.++++.+|..|.+-++..|+
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 3668889999999999999999999987 57774 3 22 356645689999999999999888876654
No 234
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=93.36 E-value=0.25 Score=39.48 Aligned_cols=71 Identities=14% Similarity=0.102 Sum_probs=57.2
Q ss_pred ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE--ECCeecC--CCCcccccCCCCCCEEEEEe
Q 019968 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE--DQRLITDICKRNEAVIHLLV 182 (333)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi--f~Gk~Le--D~~tL~dy~I~~gsvIhLv~ 182 (333)
...|.||..+|+.+.-+...++||.+|..-|... +.. +....|+ |-.+.|. .+.||.+.|+.+.++|++..
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~--~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYH--KSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCC--TTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCC--CCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 4567888889988888889999999999999865 334 5667776 5678885 47899999999998887744
No 235
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=92.57 E-value=0.75 Score=38.05 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=52.4
Q ss_pred CcEEEEEE---eCCeEEEEEecCCCCHHHHHHHHHHh--hCCCC------cceEEEE-C---Cee-cccCC---------
Q 019968 32 DSILIFLS---VGGSVIPMRVMESDSIASVKLRIQSY--NGFFV------KKQKLVF-E---GRE-LARSN--------- 86 (333)
Q Consensus 32 ~~M~I~Vt---~~G~~~~i~V~~sdTV~~LK~kI~~~--~gip~------~~Q~Lif-~---G~~-L~~D~--------- 86 (333)
.++.+++- .++..+++.|...|||.++|.||-.. .|+|. +...|-+ . |+. |.+.+
T Consensus 3 ~~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~ 82 (127)
T 3h6n_A 3 KPRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGR 82 (127)
T ss_dssp CEEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTE
T ss_pred eEEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCce
Confidence 35566663 23456889999999999999999875 45554 4555654 2 332 55211
Q ss_pred ---ccccccccccccceeeeeec
Q 019968 87 ---SRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 87 ---~tL~dygI~~gstV~Lv~rl 106 (333)
.||+.|+|.+|+++-|..+.
T Consensus 83 krLNTL~HY~V~dgatv~l~~~~ 105 (127)
T 3h6n_A 83 KKLNTLAHYKIPEGASLAMSLID 105 (127)
T ss_dssp ECCCBTTTTTCCTTCEEEEEECC
T ss_pred eEeccccccCCCCCCEEEEEEcc
Confidence 38999999999999887664
No 236
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=92.55 E-value=0.29 Score=40.23 Aligned_cols=69 Identities=12% Similarity=0.152 Sum_probs=55.4
Q ss_pred ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhc-CCCCCCCceEEE--ECCeecCC-CCcccccCCCCCCEEE
Q 019968 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKG-REFVDLKNQELI--CDGEELED-QRLITDICKRNEAVIH 179 (333)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~-Gip~~~~~QrLi--f~Gk~LeD-~~tL~dy~I~~gsvIh 179 (333)
...|.||..+|+.+.-....++||.+|..-|.... +.. .....|+ |-.+.++| +.||.+.|+.+..++.
T Consensus 52 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~--~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 52 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMA--ATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp CCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGG--TSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCC--CCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence 46788899999999999999999999999999863 344 4666776 56888865 7899999998755443
No 237
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=91.41 E-value=0.83 Score=46.22 Aligned_cols=135 Identities=8% Similarity=0.053 Sum_probs=89.2
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECC-e------e-ccc----CCcccccccc-ccccceeeeeec-----
Q 019968 45 IPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG-R------E-LAR----SNSRVRDYGL-ADGNVLHLVLRL----- 106 (333)
Q Consensus 45 ~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G-~------~-L~~----D~~tL~dygI-~~gstV~Lv~rl----- 106 (333)
..+.|..++|+.+||..|++..|+|+++|||-.-- + + +.+ ...++.++.- .+...|.|-+..
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~~~~~~~lflE~~~~~~~~ 117 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSDNENPWTIFLETVDPELAA 117 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHTSCSSEEEEEEECCHHHHT
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhccCCceEEEEEecccccCC
Confidence 35789999999999999999999999999985321 1 1 110 1112222211 111233332210
Q ss_pred ----------ccccceeEeeeCC--cEEE----EEEecCCchHHHHHHHHHhcCCCCCCCceEEEEC------CeecC-C
Q 019968 107 ----------SDLQAITVTTVCG--KVFE----FHVERGRNVGYVKQQIAKKGREFVDLKNQELICD------GEELE-D 163 (333)
Q Consensus 107 ----------sd~m~I~Vkt~~G--k~~~----l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~------Gk~Le-D 163 (333)
.+.+.||+|-.+- ++.. +.|..+++|.++-..|.+..|+| ++.--.+|. -..|+ .
T Consensus 118 ~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p--~dt~l~lyEEi~~~~ie~l~~~ 195 (530)
T 2ylm_A 118 SGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFI--QDTSLILYEEVKPNLTERIQDY 195 (530)
T ss_dssp TTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCC--TTCCEEEEEEEETTEEEECCCS
T ss_pred ccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCC--CCCceEEEEecCCCceeEcccc
Confidence 1135677766432 2332 66889999999999999999999 766666663 34566 5
Q ss_pred CCccccc--CCCCCCEEEEE
Q 019968 164 QRLITDI--CKRNEAVIHLL 181 (333)
Q Consensus 164 ~~tL~dy--~I~~gsvIhLv 181 (333)
..|+.+. .+.+|++|-.=
T Consensus 196 ~~t~~~~~~eL~~GdII~fQ 215 (530)
T 2ylm_A 196 DVSLDKALDELMDGDIIVFQ 215 (530)
T ss_dssp SSBHHHHSTTCCTTEEEEEE
T ss_pred cccHHHHHhcccCCCEEEEE
Confidence 7899999 99999987654
No 238
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=91.13 E-value=0.63 Score=37.99 Aligned_cols=76 Identities=21% Similarity=0.417 Sum_probs=53.0
Q ss_pred CCcEEEEEEe----CCeEEEEEecCCCCHHHHHHHHHHh--hCCCCc------ceEEEE-CC---e-ecccCC-------
Q 019968 31 NDSILIFLSV----GGSVIPMRVMESDSIASVKLRIQSY--NGFFVK------KQKLVF-EG---R-ELARSN------- 86 (333)
Q Consensus 31 ~~~M~I~Vt~----~G~~~~i~V~~sdTV~~LK~kI~~~--~gip~~------~Q~Lif-~G---~-~L~~D~------- 86 (333)
..+|.++|-. ....+++.|...|||.++|.||-.. .|+|.+ ...|-+ .| + .|.+.+
T Consensus 11 ~~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~ 90 (117)
T 4e74_A 11 YKTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEN 90 (117)
T ss_dssp CCEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC--
T ss_pred cEEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecC
Confidence 4577777732 2345889999999999999999874 466544 445554 33 3 254211
Q ss_pred -----ccccccccccccceeeeeec
Q 019968 87 -----SRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 87 -----~tL~dygI~~gstV~Lv~rl 106 (333)
.||+.|+|.+|+++-|+.+.
T Consensus 91 ~wkrLNTL~HY~V~dgatl~l~~~~ 115 (117)
T 4e74_A 91 DWKRLNTLAHYQVPDGSVVALVSKQ 115 (117)
T ss_dssp -CCCCCBHHHHTCCTTCEEEEEECC
T ss_pred cceEeccccccCCCCCCEEEEEeCC
Confidence 37899999999999988764
No 239
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=90.75 E-value=1.1 Score=36.98 Aligned_cols=62 Identities=21% Similarity=0.209 Sum_probs=44.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHh----cCCCCC--CCceEEEE-CC---eecCC----------C----CcccccCCCCC
Q 019968 120 KVFEFHVERGRNVGYVKQQIAKK----GREFVD--LKNQELIC-DG---EELED----------Q----RLITDICKRNE 175 (333)
Q Consensus 120 k~~~l~V~~sdTV~~LK~~I~~~----~Gip~~--~~~QrLif-~G---k~LeD----------~----~tL~dy~I~~g 175 (333)
..+++.|-..|||.++|++|-+. .|.|.. +++..|.+ .| ..|.| + +||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 46889999999999999998764 376632 34556655 22 23322 1 46889999999
Q ss_pred CEEEEE
Q 019968 176 AVIHLL 181 (333)
Q Consensus 176 svIhLv 181 (333)
+++-|+
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 999875
No 240
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=90.51 E-value=0.79 Score=35.17 Aligned_cols=48 Identities=8% Similarity=0.064 Sum_probs=42.3
Q ss_pred CCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECC
Q 019968 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG 79 (333)
Q Consensus 31 ~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G 79 (333)
...|.|.|.+. -++.|.|.++.+..+|..+|.++.+++++.-.|.|..
T Consensus 3 ~~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 3 HMAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp SSCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred CCcEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 44588888776 7999999999999999999999999999888998854
No 241
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=89.97 E-value=2.5 Score=30.63 Aligned_cols=64 Identities=8% Similarity=0.114 Sum_probs=48.1
Q ss_pred cEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 33 SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 33 ~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
.|+|+|.-......+++..+.|+.+|...+ ++++..-.+..+|..+.+| . -+++|+.|.++...
T Consensus 4 ~m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~-~-----~L~~gD~V~ii~~V 67 (70)
T 1ryj_A 4 GMKFTVITDDGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDE-E-----EIFDGDIIEVIRVI 67 (70)
T ss_dssp CEEEEEEETTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTT-S-----BCCTTCEEEEEECT
T ss_pred eEEEEEeCccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCc-c-----cCCCCCEEEEEecc
Confidence 588888766666778888889999998875 5666666677889988733 2 67889988776543
No 242
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=89.87 E-value=0.4 Score=39.44 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=55.3
Q ss_pred CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhh-CCCCcceEEE--ECCeecccCCccccccccccccce
Q 019968 31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYN-GFFVKKQKLV--FEGRELARSNSRVRDYGLADGNVL 100 (333)
Q Consensus 31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~-gip~~~Q~Li--f~G~~L~~D~~tL~dygI~~gstV 100 (333)
....+|-|+ .+|..+.-.+..++||.+|..-|.... +.......|+ |-.+.|.+++.+|.+.|+.+.+++
T Consensus 50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 446778886 578899999999999999999999863 3445566776 557889866899999999886554
No 243
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=89.85 E-value=1.9 Score=43.51 Aligned_cols=115 Identities=10% Similarity=0.018 Sum_probs=74.8
Q ss_pred CCcEEEEEEe---CCeEEEEEecCCCCHHHHHHHHHHhhCCC---CcceEEE--ECCe---ecccCCccccccccccccc
Q 019968 31 NDSILIFLSV---GGSVIPMRVMESDSIASVKLRIQSYNGFF---VKKQKLV--FEGR---ELARSNSRVRDYGLADGNV 99 (333)
Q Consensus 31 ~~~M~I~Vt~---~G~~~~i~V~~sdTV~~LK~kI~~~~gip---~~~Q~Li--f~G~---~L~~D~~tL~dygI~~gst 99 (333)
...|+|+... .-..+.+.+..+.||++|-..++++.+++ ..+.+|+ ++++ .+. ++.++...+=.....
T Consensus 337 ~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~-~~~~i~~i~d~~~~~ 415 (530)
T 2ylm_A 337 RRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQ-EDELLECLSPATSRT 415 (530)
T ss_dssp BCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEEC-TTSBGGGSCCCTTCE
T ss_pred CceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecC-CCcccccccccccce
Confidence 4567776632 22367788899999999999999999987 4566663 6775 354 555554432111223
Q ss_pred eeeeeecc--------cccceeEee-------eCCcEEEEEEecCCchHHHHHHHHHhcCCC
Q 019968 100 LHLVLRLS--------DLQAITVTT-------VCGKVFEFHVERGRNVGYVKQQIAKKGREF 146 (333)
Q Consensus 100 V~Lv~rls--------d~m~I~Vkt-------~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip 146 (333)
+.+-.-+. +.+.|.|-- ..|..|.+.|.+..|..++|+||+++.|++
T Consensus 416 ~rieeip~ee~~~~~~~~~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~ 477 (530)
T 2ylm_A 416 FRIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQ 477 (530)
T ss_dssp EEEEECCGGGSSCCTTTEEEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCC
T ss_pred EEEEECCHHHhccCCCCcEEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCC
Confidence 32221111 112233311 357789999999999999999999999986
No 244
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.90 E-value=1 Score=34.84 Aligned_cols=63 Identities=13% Similarity=0.031 Sum_probs=52.5
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE---CCeecCCCCcccccCCCC
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DGEELEDQRLITDICKRN 174 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif---~Gk~LeD~~tL~dy~I~~ 174 (333)
..+.|+-...+.+.++|.|.-+..++--.|.++..+. +..-.|.- .+.+|+-+.+|.|||+++
T Consensus 11 vRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefd--p~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 11 VRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFD--PLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCC--TTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCC--hhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 3455555566778899999999999999999999987 88877774 667888899999999985
No 245
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.14 E-value=2.2 Score=32.92 Aligned_cols=66 Identities=17% Similarity=0.167 Sum_probs=55.8
Q ss_pred CCCcEEEEEEeCC-eEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEE---CCeecccCCcccccccccc
Q 019968 30 SNDSILIFLSVGG-SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF---EGRELARSNSRVRDYGLAD 96 (333)
Q Consensus 30 ~~~~M~I~Vt~~G-~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif---~G~~L~~D~~tL~dygI~~ 96 (333)
+..++++.|.+.. ...-+.|+|..++.+|--.|+++-.+.+..-.|.- .+..|+ -+.+|.+|||++
T Consensus 7 PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~Ld-LskSLndlgirE 76 (91)
T 2daj_A 7 GEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLD-LTKSLNDLGLRE 76 (91)
T ss_dssp CCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCC-TTSCHHHHTCSE
T ss_pred CccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccc-hhcchhhhhhhh
Confidence 4678999997544 55668999999999999999999999999888864 356787 889999999987
No 246
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=84.14 E-value=5.6 Score=30.73 Aligned_cols=50 Identities=8% Similarity=0.047 Sum_probs=42.0
Q ss_pred CCCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcc-eEEEECC
Q 019968 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK-QKLVFEG 79 (333)
Q Consensus 30 ~~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~-Q~Lif~G 79 (333)
+...|+|.+.+.|..+.+.++++.+..+|..+++...+++..+ ..+.|..
T Consensus 3 ~~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~D 53 (89)
T 1vd2_A 3 LGSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWID 53 (89)
T ss_dssp CSSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECC
T ss_pred CCCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEEC
Confidence 3457899999999999999999999999999999999987654 5566643
No 247
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=83.55 E-value=3.8 Score=36.76 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=50.3
Q ss_pred EEEEEecCCchHHHHHHHHHhcCCCCCCC-ceEEEE-C----CeecCC-CCcccccCCCCCCEEEEEeec
Q 019968 122 FEFHVERGRNVGYVKQQIAKKGREFVDLK-NQELIC-D----GEELED-QRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 122 ~~l~V~~sdTV~~LK~~I~~~~Gip~~~~-~QrLif-~----Gk~LeD-~~tL~dy~I~~gsvIhLv~r~ 184 (333)
++..+...+||.+|+.++....+++ ++ +-||-. . ...|.| +.+|.++++.++..|.+-++.
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~--~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIP--AERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCC--TTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred EEEEecccCcHHHHHHHHHHHhCCC--CCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 5677899999999999999999998 66 578864 3 245665 689999999999999987774
No 248
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=83.19 E-value=4.9 Score=30.90 Aligned_cols=60 Identities=10% Similarity=0.218 Sum_probs=52.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968 44 VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 44 ~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
.+.-.++-..++..||..++.+.|++-+...+.+.+..|. ++.+|.+.+++-.-.|.+.+
T Consensus 4 vi~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~-~~k~LvdQcVqgeGlVQinv 63 (89)
T 2juo_A 4 CVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLD-PDRSLFDQGVKTDGTVQLSV 63 (89)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECC-TTSBTTTSSCCCCSEEEEEE
T ss_pred hhhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccC-CCccHHHhhcccccEEEEEE
Confidence 3455678889999999999999999999999999999997 99999999998877777654
No 249
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=82.99 E-value=2.5 Score=31.30 Aligned_cols=64 Identities=9% Similarity=0.158 Sum_probs=46.1
Q ss_pred EEEEEEeCC-eEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 34 ILIFLSVGG-SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 34 M~I~Vt~~G-~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
|+|.|++.| ....+++.++.||++|-. ..|+++..-.+..+|+.+.+|. +.+|+.|.++.-..+
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~-------~l~GD~VeIv~~V~G 65 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ-------SVEVDRVKVLRLIKG 65 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS-------SSCCCCEEECSSCSC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH-------CCCCCEEEEEEeecc
Confidence 788887544 456689999999987654 5789988887778999887444 335888877644333
No 250
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=82.80 E-value=7.4 Score=39.99 Aligned_cols=78 Identities=19% Similarity=0.378 Sum_probs=53.2
Q ss_pred CCcEEEEEE-eC---CeEEEEEecCCCCHHHHHHHHHHh--hCCCC------cceEEEE-C---Ce-ecccCC-------
Q 019968 31 NDSILIFLS-VG---GSVIPMRVMESDSIASVKLRIQSY--NGFFV------KKQKLVF-E---GR-ELARSN------- 86 (333)
Q Consensus 31 ~~~M~I~Vt-~~---G~~~~i~V~~sdTV~~LK~kI~~~--~gip~------~~Q~Lif-~---G~-~L~~D~------- 86 (333)
..+|.++|. .. ...+++.|...|||.++|.||-.. .|+|. +...|-+ . |+ .|.+.+
T Consensus 231 ~~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~ 310 (627)
T 3ig3_A 231 YKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIEC 310 (627)
T ss_dssp CCEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEET
T ss_pred ceeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccC
Confidence 557888884 22 356889999999999999999875 45554 3444543 2 33 244211
Q ss_pred -----ccccccccccccceeeeeeccc
Q 019968 87 -----SRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 87 -----~tL~dygI~~gstV~Lv~rlsd 108 (333)
.||+.|+|.+|++|-|+.+..+
T Consensus 311 ~wkrLNTL~HY~V~Dga~v~L~p~~~~ 337 (627)
T 3ig3_A 311 DWKRVNSLAHYQVTDGSLVALVPKQVS 337 (627)
T ss_dssp TEEECCBTTTTTCCTTCEEEEEEC---
T ss_pred ceeEecchhhcCCCCCceEEEEecccc
Confidence 3799999999999999887654
No 251
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=82.67 E-value=6.2 Score=40.64 Aligned_cols=78 Identities=18% Similarity=0.357 Sum_probs=52.8
Q ss_pred CCcEEEEEE-eC------CeEEEEEecCCCCHHHHHHHHHHh--hCCCCc------ceEEEE-C---Ce-ecccCC----
Q 019968 31 NDSILIFLS-VG------GSVIPMRVMESDSIASVKLRIQSY--NGFFVK------KQKLVF-E---GR-ELARSN---- 86 (333)
Q Consensus 31 ~~~M~I~Vt-~~------G~~~~i~V~~sdTV~~LK~kI~~~--~gip~~------~Q~Lif-~---G~-~L~~D~---- 86 (333)
..++.++|- .. ...+++.|...|||.++|.||-.. .|+|.+ ...|-+ . |+ .|.+.+
T Consensus 255 ~~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~ 334 (644)
T 3hm6_X 255 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 334 (644)
T ss_dssp CCEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred ceeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccce
Confidence 557788874 22 245889999999999999999864 566654 334543 2 33 355212
Q ss_pred --------ccccccccccccceeeeeeccc
Q 019968 87 --------SRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 87 --------~tL~dygI~~gstV~Lv~rlsd 108 (333)
.||+.|+|.+|++|-|+.+...
T Consensus 335 ~~~~wkrLNTL~HY~V~dga~v~L~p~~~~ 364 (644)
T 3hm6_X 335 VQGLWRRLNTLQHYKVPDGATVALVPCLTK 364 (644)
T ss_dssp EETTEEECCBTTTTTCCTTCEEEEEEC---
T ss_pred ecCcceeecchhhcCCCCCcEEEEEecccc
Confidence 3899999999999998877654
No 252
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=82.23 E-value=3.1 Score=34.26 Aligned_cols=73 Identities=19% Similarity=0.347 Sum_probs=49.3
Q ss_pred CCcEEEEEEe----C------CeEEEEEecCCCCHHHHHHHHHHh----hCCCCc----ceEEEE-CC---eeccc----
Q 019968 31 NDSILIFLSV----G------GSVIPMRVMESDSIASVKLRIQSY----NGFFVK----KQKLVF-EG---RELAR---- 84 (333)
Q Consensus 31 ~~~M~I~Vt~----~------G~~~~i~V~~sdTV~~LK~kI~~~----~gip~~----~Q~Lif-~G---~~L~~---- 84 (333)
..++.++|.. . ...+++.|...|||.++|.||-.. .|+|.+ ...|-+ .| ..|.+
T Consensus 17 y~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~t 96 (126)
T 3kuz_A 17 QGTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSS 96 (126)
T ss_dssp CCEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTT
T ss_pred eEEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCc
Confidence 4567788754 2 246899999999999999999764 477654 334433 22 23331
Q ss_pred -----CC----ccccccccccccceeee
Q 019968 85 -----SN----SRVRDYGLADGNVLHLV 103 (333)
Q Consensus 85 -----D~----~tL~dygI~~gstV~Lv 103 (333)
++ .||+.|+|.+|+++-|+
T Consensus 97 S~~~e~~wkrLNTL~HY~V~Dgatlal~ 124 (126)
T 3kuz_A 97 SVILEDGITKLNTIGHYEISNGSTIKVF 124 (126)
T ss_dssp CCBCTTSCBCCCBTGGGTCCTTCEEEEE
T ss_pred ceEecCCeeEeccccccCCCCCCEEEEe
Confidence 11 26788999999998765
No 253
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=82.22 E-value=3.6 Score=36.55 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=50.2
Q ss_pred EEEEEEecCCchHHHHHHHHHhcCCCCCCC-ceEEE--E-CC--eecCC-CCcccccCCCCCCEEEEEeec
Q 019968 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLK-NQELI--C-DG--EELED-QRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 121 ~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~-~QrLi--f-~G--k~LeD-~~tL~dy~I~~gsvIhLv~r~ 184 (333)
.+++.+...+||.+|+.++....+++ ++ +-||- + .+ ..|+| +.||.++++.++..|.+-+|.
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~--~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIP--DEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCC--TTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCC--CCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 35678899999999999999999998 65 57775 2 22 34555 579999999999999987764
No 254
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=78.58 E-value=10 Score=29.14 Aligned_cols=60 Identities=15% Similarity=0.255 Sum_probs=52.2
Q ss_pred EEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEee
Q 019968 122 FEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (333)
Q Consensus 122 ~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r 183 (333)
+.-.++-...+..||..++.+.|+. .+...+...+..|+++++|.|-|++-...+.+.+-
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~--L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvq 64 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCS--LDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQ 64 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSC--CSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCC--cccCeEEeeccccCCCccHHHhhcccccEEEEEEE
Confidence 4456777889999999999999998 88888888999999999999999998888887654
No 255
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=78.03 E-value=6.9 Score=40.22 Aligned_cols=66 Identities=9% Similarity=0.088 Sum_probs=47.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHh--cCCCC----CCCceEEEE----CCe-ecCC--C-----------CcccccCCCC
Q 019968 119 GKVFEFHVERGRNVGYVKQQIAKK--GREFV----DLKNQELIC----DGE-ELED--Q-----------RLITDICKRN 174 (333)
Q Consensus 119 Gk~~~l~V~~sdTV~~LK~~I~~~--~Gip~----~~~~QrLif----~Gk-~LeD--~-----------~tL~dy~I~~ 174 (333)
...+++.|-..|||..+|++|-+. .|.|. .+++.-|-+ .|+ .|.| . +||+.|+|.+
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 356889999999999999999885 35542 245666765 233 2433 1 5799999999
Q ss_pred CCEEEEEeec
Q 019968 175 EAVIHLLVRK 184 (333)
Q Consensus 175 gsvIhLv~r~ 184 (333)
|+++-|+-+.
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999998765
No 256
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=77.58 E-value=12 Score=28.67 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=46.1
Q ss_pred CCcEEEEEEe-------CC-eEEEEEecCCCCHHHHHHHHHHhhC-C----------CCcceEEEECCeecccCCccccc
Q 019968 31 NDSILIFLSV-------GG-SVIPMRVMESDSIASVKLRIQSYNG-F----------FVKKQKLVFEGRELARSNSRVRD 91 (333)
Q Consensus 31 ~~~M~I~Vt~-------~G-~~~~i~V~~sdTV~~LK~kI~~~~g-i----------p~~~Q~Lif~G~~L~~D~~tL~d 91 (333)
..+|+|.|++ .| ....+++....||.+|...+..... + ....-.+..+|+... . +
T Consensus 7 ~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~-~-----~ 80 (98)
T 1vjk_A 7 HGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVS-W-----D 80 (98)
T ss_dssp --CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCC-T-----T
T ss_pred cCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECC-C-----C
Confidence 3478888851 23 5678888888999999999887631 1 012234566777664 2 6
Q ss_pred cccccccceeeeeec
Q 019968 92 YGLADGNVLHLVLRL 106 (333)
Q Consensus 92 ygI~~gstV~Lv~rl 106 (333)
+-+++|+.|.++...
T Consensus 81 ~~L~dGDeV~i~ppv 95 (98)
T 1vjk_A 81 EELKDGDVVGVFPPV 95 (98)
T ss_dssp CBCCTTCEEEEESCC
T ss_pred CCCCCCCEEEEECCC
Confidence 678899998776543
No 257
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=73.87 E-value=6.9 Score=29.91 Aligned_cols=66 Identities=14% Similarity=0.157 Sum_probs=43.5
Q ss_pred CCcEEEEEEeCCeEEEEEecCC-CCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 31 NDSILIFLSVGGSVIPMRVMES-DSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 31 ~~~M~I~Vt~~G~~~~i~V~~s-dTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
...|+ |+..|+.+. +..+ .||.+|...+ ++++..-.+..+|..+. ...+.++-+++|+.|.++...
T Consensus 18 ~~~M~--I~vNGe~~e--l~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~--~~~~~~~~L~dGD~Vei~~~V 84 (87)
T 1tyg_B 18 GGRHM--LQLNGKDVK--WKKDTGTIQDLLASY----QLENKIVIVERNKEIIG--KERYHEVELCDRDVIEIVHFV 84 (87)
T ss_dssp ----C--EEETTEEEC--CSSSCCBHHHHHHHT----TCTTSCCEEEETTEEEC--GGGTTTSBCCSSSEEEEEEEC
T ss_pred CcceE--EEECCEEEE--CCCCCCcHHHHHHHh----CCCCCCEEEEECCEECC--hhhcCCcCCCCCCEEEEEccc
Confidence 34454 455666544 4566 8999998765 56666666778888885 235667789999999877543
No 258
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=73.49 E-value=9.8 Score=39.17 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=47.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHh--cCCCC----CCCceEEEE----CCe-ecCCC-------------CcccccCCCCC
Q 019968 120 KVFEFHVERGRNVGYVKQQIAKK--GREFV----DLKNQELIC----DGE-ELEDQ-------------RLITDICKRNE 175 (333)
Q Consensus 120 k~~~l~V~~sdTV~~LK~~I~~~--~Gip~----~~~~QrLif----~Gk-~LeD~-------------~tL~dy~I~~g 175 (333)
..+++.|-..|||..+|++|-+. .|.|. .+++.-|-+ .|+ .|.|. +||+.|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 45889999999999999999865 35552 235566665 333 34331 58999999999
Q ss_pred CEEEEEeec
Q 019968 176 AVIHLLVRK 184 (333)
Q Consensus 176 svIhLv~r~ 184 (333)
+++-|+-+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999997664
No 259
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=72.83 E-value=3.3 Score=34.08 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=30.2
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCcceEEEE
Q 019968 45 IPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF 77 (333)
Q Consensus 45 ~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif 77 (333)
.++.|..+.|+.+||..|++..|+|+++|+|-.
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 457899999999999999999999999999864
No 260
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=69.85 E-value=14 Score=26.03 Aligned_cols=60 Identities=22% Similarity=0.362 Sum_probs=42.7
Q ss_pred EEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 38 Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
++..|+.+.+ ...||.+|...+ +++...-.+..+|.... .....++-+++|+.|.++...
T Consensus 2 i~vNg~~~~~---~~~tv~~ll~~l----~~~~~~v~vavN~~~v~--~~~~~~~~L~dgD~v~i~~~V 61 (64)
T 2cu3_A 2 VWLNGEPRPL---EGKTLKEVLEEM----GVELKGVAVLLNEEAFL--GLEVPDRPLRDGDVVEVVALM 61 (64)
T ss_dssp EEETTEEECC---TTCCHHHHHHHH----TBCGGGEEEEETTEEEE--GGGCCCCCCCTTCEEEEEECC
T ss_pred EEECCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECC--ccccCCcCCCCCCEEEEEeec
Confidence 3456776654 678999998876 45666666778888875 235567789999999877543
No 261
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=69.20 E-value=8.5 Score=28.35 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=42.2
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv 181 (333)
|+|.|+....+...+++.+..||++|-. ..|++ ++.-.+..||+.+..+. +.+|+.+.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~--~~~VvV~vNG~~v~~d~------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLS--PHEVTVLVDGRPVPEDQ------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCC--SSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCC--cceEEEEECCEECCHHH------CCCCCEEEEE
Confidence 6777766644556688999999998754 57888 77766667898875443 2347777774
No 262
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=68.55 E-value=29 Score=24.76 Aligned_cols=62 Identities=13% Similarity=0.024 Sum_probs=42.2
Q ss_pred ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (333)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~ 182 (333)
.|.|.|.-.. ....+++....|+.+|.+.+ +++ +..-.+..+|+.+..+. -+++|+.|.++-
T Consensus 4 ~m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~--~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 4 GMKFTVITDD-GKKILESGAPRRIKDVLGEL----EIP--IETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp CEEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCC--TTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred eEEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCC--CCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 4667664321 23456777778999998765 455 56666778999886543 577888888754
No 263
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=68.51 E-value=23 Score=27.07 Aligned_cols=43 Identities=9% Similarity=0.054 Sum_probs=37.0
Q ss_pred CcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE
Q 019968 32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV 76 (333)
Q Consensus 32 ~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li 76 (333)
..|+|.+-+.+..+.+.|.++-+..+|+.+|..+..+. ...++
T Consensus 11 ~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~ 53 (85)
T 1ip9_A 11 KTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQ 53 (85)
T ss_dssp CCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEE
T ss_pred CceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEE
Confidence 47899988888999999999999999999999998883 44444
No 264
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=66.55 E-value=13 Score=26.92 Aligned_cols=57 Identities=12% Similarity=0.251 Sum_probs=37.3
Q ss_pred EEEecCCCCHHHHHHHHHHhhCCCC--cceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 46 PMRVMESDSIASVKLRIQSYNGFFV--KKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 46 ~i~V~~sdTV~~LK~kI~~~~gip~--~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
++++ ...||.+|...+....++.. ..-.+..+|+... + .++-+++|+.|.+....++
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~-~----~~~~l~~gDeV~i~PpvsG 73 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLID-N----LNTPLKDGDVISLLPPVCG 73 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEEC-C----TTCCCCTTCEEEEECCBCC
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcC-C----CCcCCCCCCEEEEECCCCC
Confidence 3566 67899999999986543321 2334556666644 2 3566889999988765543
No 265
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=65.40 E-value=40 Score=25.56 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=44.2
Q ss_pred cccceeEeee------CC-cEEEEEEecCCchHHHHHHHHHhcC-CCC-------C-CCceEEEECCeecCCCCcccccC
Q 019968 108 DLQAITVTTV------CG-KVFEFHVERGRNVGYVKQQIAKKGR-EFV-------D-LKNQELICDGEELEDQRLITDIC 171 (333)
Q Consensus 108 d~m~I~Vkt~------~G-k~~~l~V~~sdTV~~LK~~I~~~~G-ip~-------~-~~~QrLif~Gk~LeD~~tL~dy~ 171 (333)
+.|.|.|+.. .| +...+++....||.+|.+.+..... +.. . ...-.+..||+.... ++-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 3466666552 24 4567888778899999999887642 100 0 122345568876642 667
Q ss_pred CCCCCEEEEEe
Q 019968 172 KRNEAVIHLLV 182 (333)
Q Consensus 172 I~~gsvIhLv~ 182 (333)
+++|+.|.++-
T Consensus 83 L~dGDeV~i~p 93 (98)
T 1vjk_A 83 LKDGDVVGVFP 93 (98)
T ss_dssp CCTTCEEEEES
T ss_pred CCCCCEEEEEC
Confidence 88899988753
No 266
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=64.99 E-value=14 Score=28.06 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=36.1
Q ss_pred eEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECC
Q 019968 113 TVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG 158 (333)
Q Consensus 113 ~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~G 158 (333)
.|+-...-++.++|.+.-+..+|..+|.++.+++ ++.-.|.|.-
T Consensus 7 ~VKV~~~~tvairvp~~~~y~~L~~~l~~kL~l~--~~~~~LsYk~ 50 (83)
T 1oey_A 7 TLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELR--LEHTKLSYRP 50 (83)
T ss_dssp EEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCC--GGGCCEEECC
T ss_pred EEEEEEEEEEEEECCCCCCHHHHHHHHHHHhCCC--cceeEEEeeC
Confidence 3333333588999999999999999999999998 8888888844
No 267
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=64.28 E-value=5 Score=33.01 Aligned_cols=33 Identities=12% Similarity=-0.005 Sum_probs=30.3
Q ss_pred EEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE
Q 019968 122 FEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC 156 (333)
Q Consensus 122 ~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif 156 (333)
.+++|..+.|+.+||..|++..|+| +++|||-.
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~--~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFP--QDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCC--GGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCC--cccEEEEE
Confidence 5689999999999999999999999 99999964
No 268
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=63.22 E-value=31 Score=31.52 Aligned_cols=75 Identities=11% Similarity=-0.032 Sum_probs=55.9
Q ss_pred cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE--CCe--ecCCCCcccccCCCCCCEEEEEee
Q 019968 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC--DGE--ELEDQRLITDICKRNEAVIHLLVR 183 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif--~Gk--~LeD~~tL~dy~I~~gsvIhLv~r 183 (333)
..+.+.|...+| ++.+.++++.|+.+|=..|....|+.. .+---|.| +|. .|+.++++.+..+..+....+.+|
T Consensus 21 ~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e-~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRE-TWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCC-GGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCC-CccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 446677888888 788999999999999999999999872 44455655 443 367788888877666665655555
Q ss_pred c
Q 019968 184 K 184 (333)
Q Consensus 184 ~ 184 (333)
.
T Consensus 99 ~ 99 (314)
T 1h4r_A 99 A 99 (314)
T ss_dssp E
T ss_pred E
Confidence 4
No 269
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=61.22 E-value=18 Score=33.85 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=37.5
Q ss_pred eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCee
Q 019968 40 VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE 81 (333)
Q Consensus 40 ~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~ 81 (333)
..-....+.+.+..|+.+++.++++.+++++..|.|.+.+..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~ 360 (396)
T 4eut_A 319 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRR 360 (396)
T ss_dssp TTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSE
T ss_pred ccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCC
Confidence 345778899999999999999999999999999999998843
No 270
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=60.72 E-value=28 Score=31.43 Aligned_cols=73 Identities=19% Similarity=0.114 Sum_probs=53.0
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE---CCe--ecCCCCcccccCCCCCCEEEEEeec
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DGE--ELEDQRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif---~Gk--~LeD~~tL~dy~I~~gsvIhLv~r~ 184 (333)
+.+.|.+.+| +..+.++++.|+.+|=..|.+..|+. +.+---|.| +|. .|+..+++.+.++..+....|.+|.
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~-e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr~ 79 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLR-EVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA 79 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCC-CGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCC-CcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEEE
Confidence 4567777787 67899999999999999999999986 244445655 343 3677788888766556656665554
No 271
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=59.35 E-value=26 Score=26.20 Aligned_cols=60 Identities=8% Similarity=0.130 Sum_probs=38.0
Q ss_pred EEEecCCCCHHHHHHHHHHhhCC------C-------CcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 46 PMRVMESDSIASVKLRIQSYNGF------F-------VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 46 ~i~V~~sdTV~~LK~kI~~~~gi------p-------~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
.+++ +..||.+|...+..+..- . ...-.+..+|+... +. .-.++-+++|+.|.++...++
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~-~~-~~~~~~L~~gDeV~i~Ppv~G 92 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVR-FS-GGLATAIADGDSVTILPAVAG 92 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGG-GT-TGGGCBCCTTCEEEEEECCTT
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEcc-Cc-CCCCcCCCCCCEEEEECCCCC
Confidence 4664 568999999999876420 0 01234556777664 21 224667899999988765543
No 272
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=58.34 E-value=48 Score=26.08 Aligned_cols=72 Identities=13% Similarity=0.141 Sum_probs=55.8
Q ss_pred cceeEeeeCC---cEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCe---ecCCCCcccccCCCCCCEEEEE
Q 019968 110 QAITVTTVCG---KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE---ELEDQRLITDICKRNEAVIHLL 181 (333)
Q Consensus 110 m~I~Vkt~~G---k~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk---~LeD~~tL~dy~I~~gsvIhLv 181 (333)
..|+|...+. ..++++|....-|+-|-.++-++..++.+-++.-|-..-+ .|.-..||..|||+-++.+++.
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ft 97 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFT 97 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEE
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeecc
Confidence 4566655443 5688999998999999999998888776667777766332 3577889999999999998874
No 273
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=55.39 E-value=74 Score=28.53 Aligned_cols=70 Identities=11% Similarity=0.061 Sum_probs=48.4
Q ss_pred cEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcc-eEEEE---CCe--ecccCCccccccccccccceeee
Q 019968 33 SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK-QKLVF---EGR--ELARSNSRVRDYGLADGNVLHLV 103 (333)
Q Consensus 33 ~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~-Q~Lif---~G~--~L~~D~~tL~dygI~~gstV~Lv 103 (333)
+|.+.|.+-+.++.+.++++.|+.++=..|+...|+.... --|.+ +|. -|+ .+.++.+.++..+....+.
T Consensus 1 ~i~~~V~l~d~~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd-~~~~l~~q~~~~~~~~~l~ 76 (294)
T 1ef1_A 1 TISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLK-LNKKVTAQDVRKESPLLFK 76 (294)
T ss_dssp CEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECC-SSSBGGGSCBCCCSSEEEE
T ss_pred CEEEEEEECCceEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecc-cccCHHhhccCCCCCEEEE
Confidence 3677785433478899999999999999999999997543 34554 232 254 6677777766555544443
No 274
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=52.82 E-value=25 Score=27.57 Aligned_cols=37 Identities=19% Similarity=0.139 Sum_probs=31.9
Q ss_pred cEEEEEEeC--------CeEEEEEecCCCCHHHHHHHHHHhhCCC
Q 019968 33 SILIFLSVG--------GSVIPMRVMESDSIASVKLRIQSYNGFF 69 (333)
Q Consensus 33 ~M~I~Vt~~--------G~~~~i~V~~sdTV~~LK~kI~~~~gip 69 (333)
+|+|.|.+. +..+.+-|.++.+..+|..+|..+.+++
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 477777655 6789999999999999999999998875
No 275
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=52.79 E-value=56 Score=23.31 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=34.9
Q ss_pred EEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968 123 EFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (333)
Q Consensus 123 ~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~ 182 (333)
.+++ ...||.+|.+.+....++..-...-.+.-||+...+ .++-+++|+.|.++-
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLP 69 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEEC
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEEC
Confidence 3556 567999999999865433200133345567776432 355688899998854
No 276
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=52.68 E-value=22 Score=24.96 Aligned_cols=61 Identities=7% Similarity=0.105 Sum_probs=41.9
Q ss_pred EEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 38 Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
++..|+.+ ++..+.||.+|...+ +++...-.+..+|.... .....++-+++|+.|.++...
T Consensus 3 i~vNg~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~--~~~~~~~~L~~gD~v~i~~~V 63 (66)
T 1f0z_A 3 ILFNDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVP--REQWAQHIVQDGDQILLFQVI 63 (66)
T ss_dssp EEESSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEEC--HHHHTTCCCCTTEEECEEESC
T ss_pred EEECCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECC--chhcCCcCCCCCCEEEEEeec
Confidence 34566654 456778999998876 45666566778888875 224556778999998877543
No 277
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=51.77 E-value=43 Score=24.64 Aligned_cols=60 Identities=13% Similarity=0.110 Sum_probs=41.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhhC-CC----------CcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968 43 SVIPMRVMESDSIASVKLRIQSYNG-FF----------VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (333)
Q Consensus 43 ~~~~i~V~~sdTV~~LK~kI~~~~g-ip----------~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd 108 (333)
....+++..+.||.+|...+..... +. ...-.+..+|+... . ++-+++|+.|.+....++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~-~-----~~~l~~gDeV~i~Ppv~G 88 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAA-L-----GEATAAGDELALFPPVSG 88 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECC-T-----TSBCCTTCEEEEECCCSC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECC-C-----CcccCCCCEEEEECCCCC
Confidence 6778888888999999999987642 10 01135566777665 3 567889999988765443
No 278
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=50.90 E-value=78 Score=23.93 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=37.0
Q ss_pred eEEEEEec--CCCCHHHHHHHHHHhhCCCCcc-------------eEEEECCeecccCCccccccccccccceeeeeecc
Q 019968 43 SVIPMRVM--ESDSIASVKLRIQSYNGFFVKK-------------QKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (333)
Q Consensus 43 ~~~~i~V~--~sdTV~~LK~kI~~~~gip~~~-------------Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls 107 (333)
+..++++. +..||.+|...+.+...-.... -.+..+|.-.. - ..=.++-+++|+.|-+.....
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~-~-~~~~d~~L~dgDeVa~~Ppv~ 97 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE-L-EGEKDYILEDGDIISFTSTLH 97 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG-G-GTGGGCBCCTTCEEEEEECTT
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc-c-cCCCCcCcCCCCEEEEECCCC
Confidence 56777776 6789999999998775211100 01223343211 0 001356789999987766544
Q ss_pred c
Q 019968 108 D 108 (333)
Q Consensus 108 d 108 (333)
+
T Consensus 98 G 98 (99)
T 2qjl_A 98 G 98 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 279
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=50.30 E-value=64 Score=25.55 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=44.8
Q ss_pred CcEEEEEE-------eCC--eEEEEEecC---CCCHHHHHHHHHHhhCCCCcceEEEEC-Ce------ecccCCcc----
Q 019968 32 DSILIFLS-------VGG--SVIPMRVME---SDSIASVKLRIQSYNGFFVKKQKLVFE-GR------ELARSNSR---- 88 (333)
Q Consensus 32 ~~M~I~Vt-------~~G--~~~~i~V~~---sdTV~~LK~kI~~~~gip~~~Q~Lif~-G~------~L~~D~~t---- 88 (333)
.+|+|.|+ +.| +.+.+++.. ..||.+|...+.+.. |..+.+|+.. |+ .+- ++..
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlV-N~~di~~l 86 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLI-NDADWELL 86 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEE-SSSBHHHH
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEE-CCeeeecc
Confidence 45888885 234 367788873 369999999998764 2222222211 11 122 2221
Q ss_pred -ccccccccccceeeeeecccc
Q 019968 89 -VRDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 89 -L~dygI~~gstV~Lv~rlsd~ 109 (333)
=.+|-+++|+.|.++....++
T Consensus 87 ~gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 87 GELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp CTTTCBCCSSEEEEEEECSCCC
T ss_pred CCcCcCCCCCCEEEEeCCCCCC
Confidence 146889999998887666554
No 280
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=48.90 E-value=75 Score=28.88 Aligned_cols=71 Identities=7% Similarity=-0.003 Sum_probs=50.9
Q ss_pred CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCc-ceEEEE--CCee--cccCCccccccccccccceeee
Q 019968 31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVK-KQKLVF--EGRE--LARSNSRVRDYGLADGNVLHLV 103 (333)
Q Consensus 31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~-~Q~Lif--~G~~--L~~D~~tL~dygI~~gstV~Lv 103 (333)
...+.+.|. ++| ++.+.++++.|+.++=..|+...|+... -.-|.| .|.. |+ .+.++.+.++..+....+.
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~-~~~~i~~q~~~~~~~~~l~ 96 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLK-MDKKVLDHDVSKEEPVTFH 96 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECC-TTSBGGGSSCCCSSSEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCC-CccCHHHcCCCCCCCEEEE
Confidence 567888885 566 8889999999999999999999999753 234554 3432 65 6778888766555544333
No 281
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=47.62 E-value=57 Score=33.03 Aligned_cols=74 Identities=15% Similarity=0.094 Sum_probs=54.6
Q ss_pred ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEEC---C--eecCCCCcccccCCCCCCEEEEEee
Q 019968 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD---G--EELEDQRLITDICKRNEAVIHLLVR 183 (333)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~---G--k~LeD~~tL~dy~I~~gsvIhLv~r 183 (333)
.+.+.|.+++| ++.+.|+++.|+.+|=..|....|+. +.+..-|.|- | ..|+...++.+.++..+....|.+|
T Consensus 4 ~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~-e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 4 SMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLR-EVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCC-CGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred eEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCC-CccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 35567777888 67899999999999999999999986 2455566662 2 3466778888876666666666555
Q ss_pred c
Q 019968 184 K 184 (333)
Q Consensus 184 ~ 184 (333)
.
T Consensus 82 v 82 (575)
T 2i1j_A 82 A 82 (575)
T ss_dssp E
T ss_pred E
Confidence 4
No 282
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=46.00 E-value=42 Score=31.22 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=43.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCe-ec-CCCCcccccCC-CCCCEEEEE
Q 019968 120 KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE-EL-EDQRLITDICK-RNEAVIHLL 181 (333)
Q Consensus 120 k~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk-~L-eD~~tL~dy~I-~~gsvIhLv 181 (333)
....+.+.+..|+..+++++++.++++ ++.|.|+|.+. .. +.......|.- +..+-+.|+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~t~i~--~~~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (396)
T 4eut_A 322 TAHKIYIHSYNTATIFHELVYKQTKII--SSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVV 384 (396)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCC--STTEEEESSSSEECCCSSCBTTSSCCCCSSSCEEEE
T ss_pred eEEEEEcCchhHHHHHHHHHHHhcCCC--hhhhHHHhcCCCCCCCCCCccccCCCCCCCCCeEEE
Confidence 456678889999999999999999999 99999999883 33 44455555543 222344443
No 283
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=45.17 E-value=34 Score=24.86 Aligned_cols=60 Identities=8% Similarity=0.129 Sum_probs=43.6
Q ss_pred EEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 38 Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
++..|+.+.+ ...||.+|-.. .++++..--+..+|..+. ...+.++-+++|+.|.++...
T Consensus 3 I~vNG~~~e~---~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVp--r~~~~~~~L~dGD~veIv~~V 62 (73)
T 2kl0_A 3 VTINGEQREV---QSASVAALMTE----LDCTGGHFAVALNYDVVP--RGKWDETPVTAGDEIEILTPR 62 (73)
T ss_dssp EEETTEEECC---CCSBHHHHHHH----TTCCSSSCEEEESSSEEC--HHHHTTCBCCTTCEEEEECCC
T ss_pred EEECCEEEEc---CCCcHHHHHHH----cCCCCCcEEEEECCEECC--hHHcCcccCCCCCEEEEEccc
Confidence 3456775554 66899988764 577877777889999886 235677889999999876543
No 284
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=44.90 E-value=50 Score=25.86 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=33.9
Q ss_pred CCcEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCc
Q 019968 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVK 71 (333)
Q Consensus 31 ~~~M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~ 71 (333)
..+.-|.| ..+|...+|.|++++|+.++=+.+..+.+...+
T Consensus 7 ~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~ 48 (100)
T 1wgr_A 7 GRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSD 48 (100)
T ss_dssp CSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCC
T ss_pred CCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCC
Confidence 45566666 578999999999999999999999988776644
No 285
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=44.27 E-value=35 Score=25.18 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=43.2
Q ss_pred EEeCCeEEEEEecCCCCHHHHHHHHHHhhCCC-CcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFF-VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 38 Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip-~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
|+..|+.+.+....+.||.+|-..+ +++ +..--+..+|..+. ...+.++-+++|+.|.++.-.
T Consensus 3 I~vNGe~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVp--r~~~~~~~L~dGD~IEIv~~V 66 (78)
T 2k5p_A 3 LTVNGKPSTVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLE--REAFDATTVKDGDAVEFLYFM 66 (78)
T ss_dssp EEETTEEEECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECC--TTHHHHCEECSSBCEEECCCC
T ss_pred EEECCEEEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECC--hHHcCcccCCCCCEEEEEeee
Confidence 4456765543211678999887654 666 66666789999986 345677889999999876543
No 286
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=42.88 E-value=1.1e+02 Score=23.27 Aligned_cols=61 Identities=10% Similarity=-0.002 Sum_probs=49.3
Q ss_pred EEEEEecCCchHHHHHHHHHh-cC--CCCCCCceEEEECCee--cCCCCcccccCCCCCCEEEEEe
Q 019968 122 FEFHVERGRNVGYVKQQIAKK-GR--EFVDLKNQELICDGEE--LEDQRLITDICKRNEAVIHLLV 182 (333)
Q Consensus 122 ~~l~V~~sdTV~~LK~~I~~~-~G--ip~~~~~QrLif~Gk~--LeD~~tL~dy~I~~gsvIhLv~ 182 (333)
.-+.|+..+|+.++-++++.. .| +.+-+.--++.++|.. +..+.|+++-|+++-..|.++.
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 457899999999999998875 34 4333456677889998 8999999999999999988764
No 287
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=40.63 E-value=22 Score=36.86 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=42.0
Q ss_pred eCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECC-eecCCCCccccc
Q 019968 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG-EELEDQRLITDI 170 (333)
Q Consensus 117 ~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~G-k~LeD~~tL~dy 170 (333)
...+...+.+.+..|+.+++..|++.+|++ ++.|.+++.+ -.++..+....|
T Consensus 319 ~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~--~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 319 VSGRVHTYPVTENENLQNLKSWLQQDTGIP--EEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSSCCCEEECCTTCCHHHHHHHHHTTSCCC--STTCEEESSSSCCCCTTSCGGGS
T ss_pred cccccceeecCCCccHHHHHHHHHHHhCCC--HHHHHHHhccCCCCCCCcchhhh
Confidence 345667789999999999999999999999 9999999854 445656566654
No 288
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=40.12 E-value=47 Score=23.22 Aligned_cols=64 Identities=9% Similarity=-0.003 Sum_probs=39.7
Q ss_pred cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (333)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~ 184 (333)
|.|.|...+|+. .++....|+.++-..+....+ ....-...+|+..+-+ +-+++|+.|.++...
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~----~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt~~ 64 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG----DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLSSK 64 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH----HTEEEEEETTEECCTT-----CBCCSSSBEEEEECC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc----cceEEEEECCEEeCCC-----cCcCCCCEEEEEECC
Confidence 667786667875 556678899998777632211 1111234688766443 556677888887543
No 289
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=40.11 E-value=1.1e+02 Score=31.05 Aligned_cols=70 Identities=10% Similarity=0.097 Sum_probs=49.7
Q ss_pred CcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCc-ceEEEEC---C--eecccCCccccccccccccceeee
Q 019968 32 DSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVK-KQKLVFE---G--RELARSNSRVRDYGLADGNVLHLV 103 (333)
Q Consensus 32 ~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~-~Q~Lif~---G--~~L~~D~~tL~dygI~~gstV~Lv 103 (333)
..|.+.|. ++| ++.+.|+++.|+.+|=..|+...|+... -.-|+|. | .-|. .+.++.+.+++.+..+.+.
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd-~~k~i~~q~~~~~~~~~L~ 79 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIK-LYKKVMQQDVKKENPLQFK 79 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECC-TTSBGGGSCBCCCSSEEEE
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhh-ccccHHHhcccCCCCeEEE
Confidence 46778886 565 7889999999999999999999999743 3455552 2 2354 6677777766655554443
No 290
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=39.65 E-value=43 Score=26.08 Aligned_cols=60 Identities=15% Similarity=0.268 Sum_probs=41.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCCCCc-----------ceEEEECC-eeccc-----CCccccccccccccceeee
Q 019968 44 VIPMRVMESDSIASVKLRIQSYNGFFVK-----------KQKLVFEG-RELAR-----SNSRVRDYGLADGNVLHLV 103 (333)
Q Consensus 44 ~~~i~V~~sdTV~~LK~kI~~~~gip~~-----------~Q~Lif~G-~~L~~-----D~~tL~dygI~~gstV~Lv 103 (333)
...++++++.|..+|-..+.+.-.+... ...|+..+ ..|++ -+.+|.+.|+.+|..|++.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 4568999999999999999985433222 34566554 12221 2367999999999988775
No 291
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=39.58 E-value=23 Score=36.68 Aligned_cols=52 Identities=25% Similarity=0.349 Sum_probs=42.7
Q ss_pred eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECC-eecccCCcccccc
Q 019968 40 VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG-RELARSNSRVRDY 92 (333)
Q Consensus 40 ~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G-~~L~~D~~tL~dy 92 (333)
...+.+.+.+.++.|+.+++..|+..+|+++..|.+++.+ ..+. .......|
T Consensus 319 ~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~-p~~~~~~~ 371 (676)
T 3qa8_A 319 VSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALN-SAQPLTQY 371 (676)
T ss_dssp SSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCC-TTSCGGGS
T ss_pred cccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCC-CCcchhhh
Confidence 4567778999999999999999999999999999999864 5555 55555554
No 292
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=38.35 E-value=61 Score=24.51 Aligned_cols=63 Identities=10% Similarity=0.033 Sum_probs=40.4
Q ss_pred cccceeEeeeCCcEEEEEEecC-CchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968 108 DLQAITVTTVCGKVFEFHVERG-RNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~s-dTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~ 182 (333)
..|.|.| +|+.+ ++... .||.+|.+.+ +++ +..-.+..||+.+.. ....++-+++|+.|.++-
T Consensus 19 ~~M~I~v---NGe~~--el~~~~~Tv~dLL~~L----~~~--~~~vaVavNg~iV~~-~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 19 GRHMLQL---NGKDV--KWKKDTGTIQDLLASY----QLE--NKIVIVERNKEIIGK-ERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp ---CEEE---TTEEE--CCSSSCCBHHHHHHHT----TCT--TSCCEEEETTEEECG-GGTTTSBCCSSSEEEEEE
T ss_pred cceEEEE---CCEEE--ECCCCCCcHHHHHHHh----CCC--CCCEEEEECCEECCh-hhcCCcCCCCCCEEEEEc
Confidence 3466655 67654 45565 7999988765 455 555567789987742 234456688999998864
No 293
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=37.96 E-value=7.7 Score=30.91 Aligned_cols=74 Identities=12% Similarity=0.196 Sum_probs=42.5
Q ss_pred cEEEEEE-------eCCeEEEEEecC----CCCHHHHHHHHHHhhCCCCcceEEEEC-C--e------ecccCCccc---
Q 019968 33 SILIFLS-------VGGSVIPMRVME----SDSIASVKLRIQSYNGFFVKKQKLVFE-G--R------ELARSNSRV--- 89 (333)
Q Consensus 33 ~M~I~Vt-------~~G~~~~i~V~~----sdTV~~LK~kI~~~~gip~~~Q~Lif~-G--~------~L~~D~~tL--- 89 (333)
+|+|.|+ +-|+...+++.. ..||.+|-..+.+.. +..+..|+.. | . .|- +++.+
T Consensus 4 ~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLV-Ng~d~e~l 80 (110)
T 2k9x_A 4 HNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLV-NSCDAEVV 80 (110)
T ss_dssp SSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEE-SSSBHHHH
T ss_pred ccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEE-CCeeeecc
Confidence 4666664 234555677663 249999988888764 2223333322 3 1 243 33333
Q ss_pred --cccccccccceeeeeecccc
Q 019968 90 --RDYGLADGNVLHLVLRLSDL 109 (333)
Q Consensus 90 --~dygI~~gstV~Lv~rlsd~ 109 (333)
.+|-+++|++|.++..+.++
T Consensus 81 ~gldt~L~dgD~V~fistlhg~ 102 (110)
T 2k9x_A 81 GGMDYVLNDGDTVEFISTLHGG 102 (110)
T ss_dssp TSSCCCCCSSCEEEEEECCCCC
T ss_pred CCcccCCCCcCEEEEeCCCccc
Confidence 45778999998776555443
No 294
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=36.82 E-value=85 Score=28.57 Aligned_cols=64 Identities=13% Similarity=0.037 Sum_probs=48.3
Q ss_pred cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEEC---C--eecCCCCcccccCC
Q 019968 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD---G--EELEDQRLITDICK 172 (333)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~---G--k~LeD~~tL~dy~I 172 (333)
..+.+.|..++|....+.|+++.|+.+|=..|.+..|+. +.+.--|.|. | ..|+..+++.+...
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~-e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~ 84 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLL-EEDYFGLAIWDNATSKTWLDSAKEIKKQVR 84 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCS-SGGGEEEEEEEETTEEEECCTTSBHHHHC-
T ss_pred ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCC-CcceeEEEEEcCCCccchhccchhHHHhcC
Confidence 347788888999999999999999999999999999976 2444566652 3 23566777777643
No 295
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=34.78 E-value=1.1e+02 Score=22.07 Aligned_cols=59 Identities=15% Similarity=0.239 Sum_probs=38.1
Q ss_pred EEecCCCCHHHHHHHHHHhhC------C-----CCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968 47 MRVMESDSIASVKLRIQSYNG------F-----FVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (333)
Q Consensus 47 i~V~~sdTV~~LK~kI~~~~g------i-----p~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls 107 (333)
+++..+.||.+|...+..... + ....-.+..+|+... . ....++-+++|+.|.++....
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~-~-~~~~~~~l~~gD~V~i~ppv~ 88 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNIT-S-MKGLDTEIKDDDKIDLFPPVA 88 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGG-G-TCSSSCBCCTTCEEEEECCTT
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcc-c-cCCCCcCCCCCCEEEEeCCCC
Confidence 455567899999999887631 1 012345667777664 1 134566789999988875443
No 296
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=33.93 E-value=64 Score=23.05 Aligned_cols=58 Identities=9% Similarity=0.122 Sum_probs=37.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhhC-----CCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968 43 SVIPMRVMESDSIASVKLRIQSYNG-----FFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (333)
Q Consensus 43 ~~~~i~V~~sdTV~~LK~kI~~~~g-----ip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls 107 (333)
....++ ....||.+|...+..... ++...-.+..+|+... . ++-+++|+.|.++...+
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~-~-----~~~l~~gD~V~i~Ppv~ 79 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVS-F-----DHPLTDGDEVAFFPPVT 79 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECC-T-----TCBCCTTCEEEEECCCC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECC-C-----CCCCCCCCEEEEeCCCC
Confidence 455666 577899999999875421 1222335667777664 2 55788999988875443
No 297
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=33.30 E-value=50 Score=27.81 Aligned_cols=31 Identities=13% Similarity=0.055 Sum_probs=26.6
Q ss_pred CCcEEEEEEeCCeEEEEEecCCCCHHHHHHH
Q 019968 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLR 61 (333)
Q Consensus 31 ~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~k 61 (333)
...|.|.++.+|+.+.+++.++.|+.++=..
T Consensus 7 ~~~m~i~~~ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 7 SQLMRISATINGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHH
T ss_pred CCcceEEEEECCEEEEEecCCCCcHHHHHHh
Confidence 4578999999999999999999999876544
No 298
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=32.85 E-value=23 Score=25.81 Aligned_cols=52 Identities=13% Similarity=0.256 Sum_probs=36.5
Q ss_pred EEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968 46 PMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (333)
Q Consensus 46 ~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls 107 (333)
++++..+.||.+|...+ +++...-.+..+|+... .+ +-+++|+.|.++....
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~-~~-----~~L~dGD~V~i~ppv~ 75 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVL-ED-----DEVKDGDFVEVIPVVS 75 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEEC-SS-----SCCCSSCCCBCSCCCC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECC-CC-----CCcCCCCEEEEEcccc
Confidence 34556778999988765 45665556778888886 32 6788999987765433
No 299
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=32.01 E-value=1.3e+02 Score=22.65 Aligned_cols=70 Identities=11% Similarity=0.218 Sum_probs=41.6
Q ss_pred cEEEEEEe-------CC-eEEEEEecCCCCHHHHHHHHHHhhC-CCC---------cce-------EEEECCeecccCCc
Q 019968 33 SILIFLSV-------GG-SVIPMRVMESDSIASVKLRIQSYNG-FFV---------KKQ-------KLVFEGRELARSNS 87 (333)
Q Consensus 33 ~M~I~Vt~-------~G-~~~~i~V~~sdTV~~LK~kI~~~~g-ip~---------~~Q-------~Lif~G~~L~~D~~ 87 (333)
.|+|.|++ .| +...++ ..||.+|...+..... +.. ..- .+..+|+... . .
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~-~-~ 77 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIR-H-L 77 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGG-G-T
T ss_pred ceEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEcc-c-c
Confidence 46777752 23 344444 6899999999887631 111 012 4566776653 1 1
Q ss_pred cccccccccccceeeeeecc
Q 019968 88 RVRDYGLADGNVLHLVLRLS 107 (333)
Q Consensus 88 tL~dygI~~gstV~Lv~rls 107 (333)
.-.++-+++|+.|.++....
T Consensus 78 ~~~~~~L~~gD~V~i~ppv~ 97 (99)
T 2l52_A 78 EGLETLLKDSDEIGILPPVS 97 (99)
T ss_dssp TSTTSCCCTTEEEEEECCCS
T ss_pred CCCCCCCCCCCEEEEECCCC
Confidence 23466789999988765443
No 300
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=31.60 E-value=1.5e+02 Score=21.55 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=39.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHhcCC-----CCC---C-CceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968 120 KVFEFHVERGRNVGYVKQQIAKKGRE-----FVD---L-KNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (333)
Q Consensus 120 k~~~l~V~~sdTV~~LK~~I~~~~Gi-----p~~---~-~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~ 182 (333)
+...+++....||.+|.+.+.....- ..+ . ..-.+.-||+.... ++-+++|+.|.++-
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~P 84 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFP 84 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEEC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEEC
Confidence 46678887788999999999887531 100 0 11355568887754 55678899988754
No 301
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=31.13 E-value=57 Score=23.15 Aligned_cols=57 Identities=2% Similarity=0.001 Sum_probs=39.1
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhhCCCCcce--EEEECCeecccCCccccccccccccceeeeeec
Q 019968 43 SVIPMRVMESDSIASVKLRIQSYNGFFVKKQ--KLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (333)
Q Consensus 43 ~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q--~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl 106 (333)
....+++....||.+|...+..... ....- .+..+|+... . +.-+++|+.|.+....
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~-~-----~~~L~~gD~V~i~ppv 74 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQ-K-----SDFIQPNDTVALIPPV 74 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEEC-T-----TSEECTTCEEEEECSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECC-C-----CCCcCCCCEEEEECCC
Confidence 4566777788899999999876631 01222 5667888776 3 3678899998776543
No 302
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=30.31 E-value=2e+02 Score=22.57 Aligned_cols=72 Identities=15% Similarity=0.176 Sum_probs=51.7
Q ss_pred cEEEEEE-eC---CeEEEEEecCCCCHHHHHHHHHHhhCCCCc--ceEEEEC--CeecccCCccccccccccccceeeee
Q 019968 33 SILIFLS-VG---GSVIPMRVMESDSIASVKLRIQSYNGFFVK--KQKLVFE--GRELARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 33 ~M~I~Vt-~~---G~~~~i~V~~sdTV~~LK~kI~~~~gip~~--~Q~Lif~--G~~L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
.+.|+|+ .+ ....+++|..+.-|+-+-.++-++.+++.+ .--|-.. .+=|.+-..+|..|||+.++.++...
T Consensus 19 eL~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 19 ELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 5677775 33 366899999999999999999988776543 2233322 22233488999999999999987654
No 303
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=29.31 E-value=1.9e+02 Score=21.93 Aligned_cols=61 Identities=8% Similarity=0.056 Sum_probs=47.9
Q ss_pred EEEEEecCCchHHHHHHHHHhc-C--CCCCCC-ceEEEECC--eecCCCCcccccCCCCCCEEEEEe
Q 019968 122 FEFHVERGRNVGYVKQQIAKKG-R--EFVDLK-NQELICDG--EELEDQRLITDICKRNEAVIHLLV 182 (333)
Q Consensus 122 ~~l~V~~sdTV~~LK~~I~~~~-G--ip~~~~-~QrLif~G--k~LeD~~tL~dy~I~~gsvIhLv~ 182 (333)
.-+.|+..+|+.++-++++... | +++.+. -.++.++| +.+..+.|+++-||.+-..|.+..
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 4578899999999999988753 4 433344 45777888 889999999999999988887754
No 304
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=28.60 E-value=1.9e+02 Score=21.95 Aligned_cols=46 Identities=11% Similarity=0.016 Sum_probs=34.8
Q ss_pred eeEee-eCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCc-eEEEECCe
Q 019968 112 ITVTT-VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKN-QELICDGE 159 (333)
Q Consensus 112 I~Vkt-~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~-QrLif~Gk 159 (333)
+.||. .+|..+.+.++++.+..+|.+++++..+++ ..+ -.+-|-..
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~--~~~~f~lky~DE 54 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFD--NEQLFTMKWIDE 54 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCC--SSCCEEEEECCS
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCC--CCCeEEEEEECC
Confidence 44554 467888999999999999999999999876 444 45556443
No 305
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=27.64 E-value=92 Score=24.31 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=31.0
Q ss_pred ceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCC
Q 019968 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREF 146 (333)
Q Consensus 111 ~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip 146 (333)
-|.|-..+|...++.|++.+|+.++=+.+.++.+..
T Consensus 11 vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~ 46 (100)
T 1wgr_A 11 VVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHAL 46 (100)
T ss_dssp EEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCC
T ss_pred EEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCC
Confidence 344556789999999999999999999999998865
No 306
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=27.22 E-value=1.6e+02 Score=22.38 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=49.9
Q ss_pred EeCC--eEEEEEecCCCCHHHHHHHHHHh-hCCC----CcceEEEECCee--cccCCccccccccccccceeeee
Q 019968 39 SVGG--SVIPMRVMESDSIASVKLRIQSY-NGFF----VKKQKLVFEGRE--LARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 39 t~~G--~~~~i~V~~sdTV~~LK~kI~~~-~gip----~~~Q~Lif~G~~--L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
.+.| -..-+.|+..+|+.++-.+++.. .|.. +.-.+...+|+. |. ++.++++.||++-+.|.+..
T Consensus 9 ~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~P-r~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 9 AFEKDFLVQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFP-RDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EETTCSBEEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCC-TTCBHHHHCCCTTCEEEEEE
T ss_pred EeccccEEEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCC-CCCEeeccCCCcceEEEEEE
Confidence 4544 34567899999999999999875 3332 235678889987 88 89999999999988877653
No 307
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=25.54 E-value=1.8e+02 Score=22.88 Aligned_cols=70 Identities=16% Similarity=0.173 Sum_probs=45.4
Q ss_pred cEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE---ECCee--cccCCccccccccccccceeee
Q 019968 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV---FEGRE--LARSNSRVRDYGLADGNVLHLV 103 (333)
Q Consensus 33 ~M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li---f~G~~--L~~D~~tL~dygI~~gstV~Lv 103 (333)
.+...| ..+...+++.+..+.|+.+++..+..+.+...+.+.|+ ++|.. |+ ++..--.-.+.-+..+++.
T Consensus 9 ~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lq-p~d~si~tsL~~NgRLfvc 84 (104)
T 1wgy_A 9 EIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQ-PNDLVISKSLEASGRIYVY 84 (104)
T ss_dssp CCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCC-TTSBSSCCSSCSSCEEEEE
T ss_pred ceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecC-CcceEEEeeccccceEEEe
Confidence 333444 23556788999999999999999999999887778875 56643 44 4333333333344444443
No 308
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=25.35 E-value=45 Score=26.69 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=51.9
Q ss_pred ceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECC---eecCCCCcccccCCCCCCEEEE
Q 019968 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG---EELEDQRLITDICKRNEAVIHL 180 (333)
Q Consensus 111 ~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~G---k~LeD~~tL~dy~I~~gsvIhL 180 (333)
.|+|...+ ..++++|....-|+-|-.++-++..++.+-++.-|-..- ..|.-..||..|||+-++.+++
T Consensus 28 ~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~f 99 (112)
T 2lgx_A 28 SVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQF 99 (112)
T ss_dssp ECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCB
T ss_pred EEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceecccccee
Confidence 34553222 678899998899999999999988877555666666532 2357788999999999988775
No 309
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=25.01 E-value=2.2e+02 Score=21.46 Aligned_cols=60 Identities=15% Similarity=0.110 Sum_probs=46.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHh-hC--C---CCcceEEEECC--eecccCCccccccccccccceeeee
Q 019968 44 VIPMRVMESDSIASVKLRIQSY-NG--F---FVKKQKLVFEG--RELARSNSRVRDYGLADGNVLHLVL 104 (333)
Q Consensus 44 ~~~i~V~~sdTV~~LK~kI~~~-~g--i---p~~~Q~Lif~G--~~L~~D~~tL~dygI~~gstV~Lv~ 104 (333)
..-+.|+..+|+.++=.+++.. .| + |-.-.+..++| +.+. .+.|+++.||++-..|.+..
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~p-r~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFP-RGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEEC-TTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCC-CCCEeeccCCCCceEEEEEE
Confidence 4567899999999999999875 23 2 22245677888 8898 88999999999888876654
No 310
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=24.15 E-value=79 Score=26.77 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=24.8
Q ss_pred cEEEEEEeCCeEEEEEecCCCCHHHHHHH
Q 019968 33 SILIFLSVGGSVIPMRVMESDSIASVKLR 61 (333)
Q Consensus 33 ~M~I~Vt~~G~~~~i~V~~sdTV~~LK~k 61 (333)
.|.|.++.+|+.++++++++.|+.++=..
T Consensus 3 ~~~i~~~vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 3 KAHIELTINGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp CEEEEEEETTEEEEEEECTTCBHHHHHHH
T ss_pred CceEEEEECCEEEEEecCCCCcHHHHHHH
Confidence 46788899999999999999999986544
No 311
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=23.84 E-value=88 Score=26.38 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=24.6
Q ss_pred cEEEEEEeCCeEEEEEecCCCCHHHHHH
Q 019968 33 SILIFLSVGGSVIPMRVMESDSIASVKL 60 (333)
Q Consensus 33 ~M~I~Vt~~G~~~~i~V~~sdTV~~LK~ 60 (333)
.|.|.++.+|+.++++++++.|+.++=.
T Consensus 3 ~~~i~~~vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 3 KITINLNLNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp CEEEEEEETTEEEEEEECSSSBHHHHHH
T ss_pred cceEEEEECCEEEEEecCCCCCHHHHHH
Confidence 4788899999999999999999998643
No 312
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=23.52 E-value=79 Score=28.76 Aligned_cols=74 Identities=9% Similarity=-0.093 Sum_probs=48.3
Q ss_pred CCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcc-eEEEEC---C--eecccCCccccccccccccceee
Q 019968 30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK-QKLVFE---G--RELARSNSRVRDYGLADGNVLHL 102 (333)
Q Consensus 30 ~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~-Q~Lif~---G--~~L~~D~~tL~dygI~~gstV~L 102 (333)
....+.+.|. ++|...++.|+++.|+.++=..|..+.|+.... .-|.+. | .-|+ .+..+.+.......++.+
T Consensus 14 ~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd-~~k~i~~q~~~~~~~l~f 92 (296)
T 3qij_A 14 LYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLD-SAKEIKKQVRGVPWNFTF 92 (296)
T ss_dssp ---CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECC-TTSBHHHHC---CCEEEE
T ss_pred CCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhc-cchhHHHhcCCCCcEEEE
Confidence 4567888886 688999999999999999999999999987543 445543 2 1244 556666554322334444
Q ss_pred ee
Q 019968 103 VL 104 (333)
Q Consensus 103 v~ 104 (333)
..
T Consensus 93 rv 94 (296)
T 3qij_A 93 NV 94 (296)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 313
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=23.50 E-value=83 Score=26.55 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=24.5
Q ss_pred cEEEEEEeCCeEEEEEecCCCCHHHHHHH
Q 019968 33 SILIFLSVGGSVIPMRVMESDSIASVKLR 61 (333)
Q Consensus 33 ~M~I~Vt~~G~~~~i~V~~sdTV~~LK~k 61 (333)
.|.|.++.+|+.++++++++.|+.++=..
T Consensus 3 ~~~i~~~vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 3 KKIITVNVNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp CEEEEEEETTEEEEEEECTTCBHHHHHHH
T ss_pred CceEEEEECCEEEEEecCCCCcHHHHHHh
Confidence 46788889999999999999999986544
No 314
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=23.21 E-value=2.7e+02 Score=21.79 Aligned_cols=63 Identities=11% Similarity=0.084 Sum_probs=44.0
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE---ECCeec--CC-CCcccccCCCCCCEEEEEee
Q 019968 118 CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI---CDGEEL--ED-QRLITDICKRNEAVIHLLVR 183 (333)
Q Consensus 118 ~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi---f~Gk~L--eD-~~tL~dy~I~~gsvIhLv~r 183 (333)
+..-+++.+....|+.+++.-+.++.+.. -+.+.|+ ++|..+ .+ +..+.. .+.-+.-|++..+
T Consensus 18 Dhsy~tvr~~v~~sa~eIl~~va~kl~~~--~e~l~Lv~v~ssGEk~~lqp~d~si~t-sL~~NgRLfvc~k 86 (104)
T 1wgy_A 18 EHSYVSVKAKVSSIAQEILKVVAEKIQYA--EEDLALVAITFSGEKHELQPNDLVISK-SLEASGRIYVYRK 86 (104)
T ss_dssp SSCEEEECCCTTCBSHHHHHHHHHHHTSC--GGGEEEEEECSSCCCCBCCTTSBSSCC-SSCSSCEEEEEEC
T ss_pred cCceEEEEEeccchHHHHHHHHHHHhcCC--ccceEEEEEccCCcEeecCCcceEEEe-eccccceEEEeeh
Confidence 44567788888999999999999999876 5578776 588765 33 323332 4455667777555
No 315
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=22.84 E-value=2.6e+02 Score=21.40 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=45.7
Q ss_pred CCcEEEEE--EeCC--eEEEEEecCCCCHHHHHHHHHHhh---CCCCcceEEEECCeecccCCccccccccccccceeee
Q 019968 31 NDSILIFL--SVGG--SVIPMRVMESDSIASVKLRIQSYN---GFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (333)
Q Consensus 31 ~~~M~I~V--t~~G--~~~~i~V~~sdTV~~LK~kI~~~~---gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv 103 (333)
-..|+|.| .+.+ ..+.+++..+.||.++-....-.. .+......+..+|+... .++-+++|+.|.+.
T Consensus 10 ~~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~------~d~~L~dGDRVEIy 83 (97)
T 2hj1_A 10 LNQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK------LTDVLKEGDRIEIY 83 (97)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC------TTCBCCTTCEEEEC
T ss_pred cceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC------CCccCCCCCEEEEE
Confidence 45788888 3444 456678889999998887765322 23333456767777664 45668889988776
Q ss_pred e
Q 019968 104 L 104 (333)
Q Consensus 104 ~ 104 (333)
-
T Consensus 84 r 84 (97)
T 2hj1_A 84 R 84 (97)
T ss_dssp C
T ss_pred e
Confidence 4
No 316
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=22.74 E-value=1.8e+02 Score=23.67 Aligned_cols=60 Identities=8% Similarity=0.160 Sum_probs=42.0
Q ss_pred CcEEEEE-EeCCeE-------EEEEecCCCCHHHHHHHHHHhhCCCCcceEEE-ECCeecccCCccccc
Q 019968 32 DSILIFL-SVGGSV-------IPMRVMESDSIASVKLRIQSYNGFFVKKQKLV-FEGRELARSNSRVRD 91 (333)
Q Consensus 32 ~~M~I~V-t~~G~~-------~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li-f~G~~L~~D~~tL~d 91 (333)
..+-|.| +..+.. -.+-|..+.||+++..-|.++.++++++-..+ |-+..+...+.++++
T Consensus 34 ~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~ 102 (130)
T 2zjd_A 34 TKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISE 102 (130)
T ss_dssp TEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHH
T ss_pred CceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHH
Confidence 4566777 443322 34568999999999999999999998876655 666555535555544
No 317
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=21.52 E-value=94 Score=26.01 Aligned_cols=29 Identities=10% Similarity=0.022 Sum_probs=24.2
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHH
Q 019968 34 ILIFLSVGGSVIPMRVMESDSIASVKLRI 62 (333)
Q Consensus 34 M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI 62 (333)
+.|.++.+|+.++++++++.|+.++=...
T Consensus 3 ~~i~~~vNG~~~~v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 3 NILRLTLNGRAREDLVPDNMLLLDYLRET 31 (161)
T ss_dssp EEEEEEETTEEEEEEEETTCBHHHHHHHT
T ss_pred ceEEEEECCEEEEEecCCcCcHHHHHHHc
Confidence 45777899999999999999999776554
No 318
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=21.29 E-value=2.7e+02 Score=21.85 Aligned_cols=48 Identities=8% Similarity=0.110 Sum_probs=40.1
Q ss_pred CCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCee
Q 019968 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE 81 (333)
Q Consensus 31 ~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~ 81 (333)
...++|.+.+.|.+..+.+.-.-+..+|..++....|-+ ..|.|...+
T Consensus 6 ~~dvRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~---ldL~y~n~E 53 (103)
T 2cu1_A 6 SGDVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQS---MDLHYTNNE 53 (103)
T ss_dssp SCEEEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSC---EEEEECSSS
T ss_pred cCcEEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCe---eeEEEecce
Confidence 456788888999999999999999999999999999975 456675433
No 319
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=20.39 E-value=1.5e+02 Score=24.22 Aligned_cols=51 Identities=22% Similarity=0.150 Sum_probs=0.0
Q ss_pred chHHHHHHHHHhcCCCC-----CCCceEEEECCeecCC-CCcccccCCCCCCEEEEE
Q 019968 131 NVGYVKQQIAKKGREFV-----DLKNQELICDGEELED-QRLITDICKRNEAVIHLL 181 (333)
Q Consensus 131 TV~~LK~~I~~~~Gip~-----~~~~QrLif~Gk~LeD-~~tL~dy~I~~gsvIhLv 181 (333)
|..+|-..++.+.|... +..+++|+|.=--=++ .++|++.|+++|+.|.+.
T Consensus 21 TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 21 KLSDFVVLIREKYSYPQDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp BHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred CHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Done!