BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019970
         (333 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RKO|K Chain K, Crystal Structure Of The Membrane Domain Of Respiratory
           Complex I From E. Coli At 3.0 Angstrom Resolution
 pdb|3RKO|G Chain G, Crystal Structure Of The Membrane Domain Of Respiratory
           Complex I From E. Coli At 3.0 Angstrom Resolution
          Length = 100

 Score = 28.5 bits (62), Expect = 5.9,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 268 GVLLAGIYFMVDVQGHR-RVTMVFEWMGLHALMIYILVACNILPVLLQGFYWRQPQNNIL 326
           G++LA I F++ + G   R  ++F  +GL      I++  + L  ++ G YW Q    ++
Sbjct: 7   GLILAAILFVLGLTGLVIRRNLLFMLIGLE-----IMINASALAFVVAGSYWGQTDGQVM 61

Query: 327 RLIGI 331
            ++ I
Sbjct: 62  YILAI 66


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.144    0.493 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,460,494
Number of Sequences: 62578
Number of extensions: 357687
Number of successful extensions: 694
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 694
Number of HSP's gapped (non-prelim): 1
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)