Query 019970
Match_columns 333
No_of_seqs 134 out of 492
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 05:59:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4683 Uncharacterized conser 100.0 2E-67 4.3E-72 507.6 16.2 305 3-326 207-519 (549)
2 COG4299 Uncharacterized protei 100.0 1.9E-46 4E-51 351.3 16.0 227 13-311 82-309 (371)
3 PF06423 GWT1: GWT1; InterPro 98.4 2E-06 4.4E-11 74.4 10.2 117 192-310 2-132 (136)
4 PF07786 DUF1624: Protein of u 98.0 5.2E-05 1.1E-09 69.4 11.4 119 10-220 71-189 (223)
5 PF04235 DUF418: Protein of un 95.7 0.044 9.5E-07 47.9 7.6 57 248-304 45-101 (163)
6 PF01757 Acyl_transf_3: Acyltr 86.5 2.8 6.1E-05 37.8 7.4 17 288-304 284-300 (340)
7 COG2311 Predicted membrane pro 81.9 28 0.0006 35.6 12.7 38 267-304 285-322 (394)
8 PRK10835 hypothetical protein; 80.8 14 0.0003 37.0 10.2 33 272-304 277-309 (373)
9 PF10129 OpgC_C: OpgC protein; 79.0 11 0.00024 37.7 8.8 56 248-304 259-314 (358)
10 PF15345 TMEM51: Transmembrane 76.4 1.9 4.1E-05 40.8 2.4 54 229-283 9-86 (233)
11 PF01889 DUF63: Membrane prote 55.9 1.4E+02 0.003 29.1 10.6 31 250-280 136-166 (273)
12 PF11457 DUF3021: Protein of u 46.4 1.6E+02 0.0035 24.5 8.6 58 191-253 39-101 (136)
13 PF11255 DUF3054: Protein of u 42.6 1.7E+02 0.0036 24.7 7.9 79 191-273 24-106 (112)
14 TIGR02230 ATPase_gene1 F0F1-AT 42.2 83 0.0018 26.1 5.9 25 195-219 43-69 (100)
15 cd08764 Cyt_b561_CG1275_like N 37.4 1.4E+02 0.003 28.1 7.2 29 190-218 168-196 (214)
16 COG3594 NolL Fucose 4-O-acetyl 37.4 2.3E+02 0.005 28.5 9.2 47 261-314 240-286 (343)
17 KOG0721 Molecular chaperone (D 36.6 30 0.00065 32.7 2.7 48 249-297 62-109 (230)
18 COG5062 Uncharacterized membra 33.1 42 0.0009 34.1 3.2 110 192-303 266-378 (429)
19 PRK03854 opgC glucans biosynth 28.8 3E+02 0.0064 27.0 8.5 18 287-304 303-320 (375)
20 COG3083 Predicted hydrolase of 27.5 3.9E+02 0.0086 28.7 9.2 83 142-240 98-183 (600)
21 PF09664 DUF2399: Protein of u 26.4 19 0.00041 31.8 -0.4 12 185-196 69-80 (152)
22 PF05628 Borrelia_P13: Borreli 26.2 2E+02 0.0043 25.3 5.8 81 192-272 6-86 (135)
23 PF13828 DUF4190: Domain of un 25.0 1.4E+02 0.0029 22.6 4.1 48 196-243 10-58 (62)
24 PRK05771 V-type ATP synthase s 24.3 2E+02 0.0042 30.9 6.7 26 229-254 396-422 (646)
25 PF06461 DUF1086: Domain of Un 23.9 54 0.0012 29.0 2.0 29 35-63 98-126 (145)
26 TIGR00806 rfc RFC reduced fola 22.1 4.6E+02 0.0099 27.9 8.6 70 230-304 331-402 (511)
27 PF01770 Folate_carrier: Reduc 21.9 4.7E+02 0.01 26.9 8.5 53 249-304 335-389 (412)
28 COG2807 CynX Cyanate permease 21.6 3.8E+02 0.0083 27.5 7.7 48 192-244 47-94 (395)
29 PRK13499 rhamnose-proton sympo 21.6 1.1E+02 0.0024 30.7 3.9 40 200-243 299-338 (345)
30 PF15050 SCIMP: SCIMP protein 21.4 1.3E+02 0.0028 26.1 3.7 43 260-302 17-59 (133)
31 PRK05771 V-type ATP synthase s 20.4 2.7E+02 0.0059 29.9 6.8 48 197-244 395-464 (646)
32 PF07694 5TM-5TMR_LYT: 5TMR of 20.3 4.6E+02 0.0099 22.4 7.2 41 194-235 81-121 (169)
33 PF01284 MARVEL: Membrane-asso 20.2 4.8E+02 0.01 21.2 8.1 54 249-303 34-90 (144)
34 PF02439 Adeno_E3_CR2: Adenovi 20.1 1.7E+02 0.0036 20.3 3.3 25 260-284 10-34 (38)
No 1
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2e-67 Score=507.57 Aligned_cols=305 Identities=40% Similarity=0.710 Sum_probs=266.9
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHhcCccccccccccccccccceEEhhhHHHHHHHHHHHHHHHHHHhCCCCCccchhhh
Q 019970 3 RFNTCRFCYAIFPLYCWCFIGSYVQGGFFHGINNLKYGVDIAQIRWMGVLQRIAIAYLVAALCEIWLKGDGHVSSKLSLF 82 (333)
Q Consensus 3 ~~~~~~~~~~~~r~~~Lf~lGl~l~~~~~~~~~~l~~~~d~~~~Ri~GVLQRIal~Ylv~all~l~~~~~~~~~~~~~~~ 82 (333)
||..|| .|-+|..+|.++|+++||+|+|.+|+++++.|.|++|+||+|||+|++|+++|+++.+..+ ..+.+.++.
T Consensus 207 rf~a~r--Ka~~R~cklllwgLflqGgf~h~~~nLTygidve~lR~mGILQr~~~ayLVvAi~~~~~~~--~~~~~~S~~ 282 (549)
T KOG4683|consen 207 RFSATR--KAKARICKLLLWGLFLQGGFLHSMSNLTYGIDVEQLRIMGILQRFGVAYLVVAILHTLCCR--PISPQRSWQ 282 (549)
T ss_pred hhhHhH--HHHHHHHHHHHHHHHHhhhcccCcccccCCccHHHHHHHHHHHHhhHHHHHHHHHhhhccC--CCccccchh
Confidence 566666 5789999999999999999999999999999999999999999999999999999987654 112222211
Q ss_pred h------hhhHHHHHHHHHHHHHHHHHHcccCCCCCCCCcccCCCCCCcccccccCCCCCCC-CCCChhhhhhhhhcCCC
Q 019970 83 R------KYRGHWVVALVLTTLYLLLLYGLYVPDWQYEFPVETSSSSPWIFNVTCGVRGSTG-PACNAVGMIDRKILGIQ 155 (333)
Q Consensus 83 ~------~~~~q~~~~~~lL~~y~~l~~~~~vP~~~~~~~~~gpgg~~~~~~~~~~~~g~~~-~~~n~a~~IDr~vLG~~ 155 (333)
| -......+-.+++..|..++|..-+|+||.+| +||||.++ ... |.||+++|.||++||++
T Consensus 283 R~V~~~~L~~~~~~~~~~~V~~~~~~~~~~~~~~~~r~~--~~~~G~~~----------~~~~P~CnAvGy~DrqvLGi~ 350 (549)
T KOG4683|consen 283 RAVHDVCLFSGELAVLLALVATYLGLTFGLRVPGCPRGY--LGPGGKHD----------YNAHPKCNAVGYADRQVLGIA 350 (549)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhhhceecccccCCCCccc--ccCCcccc----------cCCCCCccchhhhHHhhhhhH
Confidence 1 12223333445555666777888899999999 88876543 233 56999999999999999
Q ss_pred ccccCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Q 019970 156 HLYRKPIYSRTKQCSINSPDYGPMPLDAPSWCQAPFDPEGLLSSVMATVTCLIGLHFGHLIVHFKDHRDRMLNWIILSSC 235 (333)
Q Consensus 156 H~y~~~~~~~~~~~~~~~~~~g~~~~~~p~w~~~~fDPEGlLstlpai~t~llG~~aG~iL~~~~~~~~r~~~l~~~Gv~ 235 (333)
||||+|+++|+||||+|||.+|++|+|||.||+.||||||+||+|.|++++++|+++|+++.+.|....|+.+|...+.+
T Consensus 351 HiY~hP~~~r~k~cs~n~P~nG~l~~DAPSWCqapFdPEGilssi~avv~~llG~h~Ghiilh~k~~~sRir~wis~~~~ 430 (549)
T KOG4683|consen 351 HIYQHPTAKRVKDCSINYPNNGPLPPDAPSWCQAPFDPEGILSSILAVVQVLLGAHAGHIILHHKNFQSRIRRWISLAIL 430 (549)
T ss_pred HHhcCchHHHhhhcccCCCCCCCCCCCCchhhcCCCChHHHHHHHHHHHHHHHHhhcCeEEEEccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccC-CcccccCCchhHHHHHhHHHHHHHHHHHHHhhccCccccchhhhhhchhHHHHHHHhhcChHHHhhh
Q 019970 236 LIGLGLSLDFVG-MHLNKALYSLSYTCLTAGASGVLLAGIYFMVDVQGHRRVTMVFEWMGLHALMIYILVACNILPVLLQ 314 (333)
Q Consensus 236 ll~lG~ll~~~~-~PInK~LWT~SfVl~tsG~a~llla~~y~liDv~~~~~~~~pf~~~G~N~L~iYvl~~~~i~~~~~~ 314 (333)
+.++|..++.+. +|+||+||+.||+++|+|.+.++++.+|+++|++.|++-+.||+..|||+|++||++ +++..++.
T Consensus 431 l~llg~tL~~~s~~Plnk~L~slsfvCVT~~~A~Li~S~mY~~iDv~EW~~~~~P~~~~GMNAi~~YV~~--~vL~~~~~ 508 (549)
T KOG4683|consen 431 LGLLGGTLCGFSAIPLNKNLWSLSFVCVTVSLALLILSLMYYFIDVREWSWSGYPFTECGMNAIVMYVGH--SVLHKMLP 508 (549)
T ss_pred HHHHhhhhhcccccchhHhHHHhhhhHHHHHHHHHHHHHHHHHhhHHHhhhccCChhhhccchhHHHHhH--HHHHHhcc
Confidence 999999988554 899999999999999999999999999999999999888999999999999999994 68888777
Q ss_pred cceecCCCcchh
Q 019970 315 GFYWRQPQNNIL 326 (333)
Q Consensus 315 ~~~~~~~~~~~~ 326 (333)
|+|..||+|+-
T Consensus 509 -W~~R~~~~~~H 519 (549)
T KOG4683|consen 509 -WHWRIGEMNTH 519 (549)
T ss_pred -hhhccCCCcee
Confidence 99999998863
No 2
>COG4299 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=1.9e-46 Score=351.35 Aligned_cols=227 Identities=31% Similarity=0.328 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHHhcCcccccccccccccc-ccceEEhhhHHHHHHHHHHHHHHHHHHhCCCCCccchhhhhhhhHHHHH
Q 019970 13 IFPLYCWCFIGSYVQGGFFHGINNLKYGVD-IAQIRWMGVLQRIAIAYLVAALCEIWLKGDGHVSSKLSLFRKYRGHWVV 91 (333)
Q Consensus 13 ~~r~~~Lf~lGl~l~~~~~~~~~~l~~~~d-~~~~Ri~GVLQRIal~Ylv~all~l~~~~~~~~~~~~~~~~~~~~q~~~ 91 (333)
.+|+..+|++|.+++++-..+ + +.+| .++.|+||||||||+||+++|+...+++ .|+||+.
T Consensus 82 ~RRaa~~f~Lg~Lm~~F~~~~--~--ws~~~~s~tr~mGVLQrIaL~ylfAal~v~~L~--------------~r~q~~l 143 (371)
T COG4299 82 YRRAAERFALGYLMGAFVTVR--D--WSVTSHSLTRGMGVLQRIALAYLFAALLVRQLR--------------GRWQALL 143 (371)
T ss_pred HHHHHHHHHHHHHhhhccccc--e--eeeeechhhHHHHHHHHHHHHHHHHHHHHHhcC--------------hHHHHHH
Confidence 356999999999999753221 2 2344 7899999999999999999999987775 5899999
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCCcccCCCCCCcccccccCCCCCCCCCCChhhhhhhhhcCCCccccCccccccccccc
Q 019970 92 ALVLTTLYLLLLYGLYVPDWQYEFPVETSSSSPWIFNVTCGVRGSTGPACNAVGMIDRKILGIQHLYRKPIYSRTKQCSI 171 (333)
Q Consensus 92 ~~~lL~~y~~l~~~~~vP~~~~~~~~~gpgg~~~~~~~~~~~~g~~~~~~n~a~~IDr~vLG~~H~y~~~~~~~~~~~~~ 171 (333)
++++|++||+++.++|+|+.| ++..+|..+++|+...+.+|+|..
T Consensus 144 aavLL~gYwl~lm~~p~P~~~------------------------l~~~Gn~g~~~d~l~i~~~hLy~~----------- 188 (371)
T COG4299 144 AAVLLAGYWLFLMFTPHPAAP------------------------LGGIGNVGESADPLQILNDHLYSA----------- 188 (371)
T ss_pred HHHHHHHHHHHHhhcCCCccc------------------------cccccccccccchhhhhhhhhhcc-----------
Confidence 999999999999999999743 334569999999999999999975
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhhcccCCccc
Q 019970 172 NSPDYGPMPLDAPSWCQAPFDPEGLLSSVMATVTCLIGLHFGHLIVHFKDHRDRMLNWIILSSCLIGLGLSLDFVGMHLN 251 (333)
Q Consensus 172 ~~~~~g~~~~~~p~w~~~~fDPEGlLstlpai~t~llG~~aG~iL~~~~~~~~r~~~l~~~Gv~ll~lG~ll~~~~~PIn 251 (333)
. +.|||||++||+|++++++.|.++++.+++++.+.+....++++|++++++|+.|. ..+|||
T Consensus 189 ----d------------G~~dpeGLlstvPttv~VLaGylaar~l~~~p~~~ra~l~la~~Gvvl~~~G~gW~-~~fPi~ 251 (371)
T COG4299 189 ----D------------GGFDPEGLLSTVPTTVLVLAGYLAARPLQQKPGNPRAPLLLAGLGVVLTALGYGWA-GRFPIS 251 (371)
T ss_pred ----c------------CCCCchhhhhcchHHHHHHHHHHhhhHHhhCCCCCcchHHHHHHHHHHHHhccccc-cccccc
Confidence 1 35899999999999999999999999999988777777789999999999999999 669999
Q ss_pred ccCCchhHHHHHhHHHHHHHHHHHHHhhccCccccchhhhhhchhHHHHHHHhhcChHHH
Q 019970 252 KALYSLSYTCLTAGASGVLLAGIYFMVDVQGHRRVTMVFEWMGLHALMIYILVACNILPV 311 (333)
Q Consensus 252 K~LWT~SfVl~tsG~a~llla~~y~liDv~~~~~~~~pf~~~G~N~L~iYvl~~~~i~~~ 311 (333)
|++||||||++|+|+..++++.||.++|.+..+++.+||+++|.|+|..|+++ .++-.
T Consensus 252 KkLWTssyvl~t~G~~llllaac~~l~e~~~~kr~~~pf~i~GlNalalyvls--~L~~v 309 (371)
T COG4299 252 KKLWTSSYVLYTAGLGLLLLAACWVLAESPGGKRLLAPFTIPGLNALALYVLS--ILIKV 309 (371)
T ss_pred hhhcCCceeehhhhHHHHHHHHHHHHHcCcccCcCcCceeecCcchhHHHHHH--HHHHH
Confidence 99999999999999999999999999999999999999999999999999995 34444
No 3
>PF06423 GWT1: GWT1; InterPro: IPR009447 Glycosylphosphatidylinositol (GPI) is a conserved post-translational modification to anchor cell surface proteins to plasma membrane in eukaryotes. GWT1 is involved in GPI anchor biosynthesis; it is required for inositol acylation in yeast [].; GO: 0016746 transferase activity, transferring acyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=98.42 E-value=2e-06 Score=74.35 Aligned_cols=117 Identities=19% Similarity=0.255 Sum_probs=92.0
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHHhccccch---------HHHHHHHHHHHHHHHHHHhhcccCCcccccCCchhHHHH
Q 019970 192 DPEGLLSSVMATVTCLIGLHFGHLIVHFKDHR---------DRMLNWIILSSCLIGLGLSLDFVGMHLNKALYSLSYTCL 262 (333)
Q Consensus 192 DPEGlLstlpai~t~llG~~aG~iL~~~~~~~---------~r~~~l~~~Gv~ll~lG~ll~~~~~PInK~LWT~SfVl~ 262 (333)
+.||++|.+.-++-=++|+..|+.+...++.. ++..+++.+.+++.++-.+++....|++.++...+||++
T Consensus 2 NrEGi~S~~GY~aIyl~g~~~G~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vSRRlaNl~Yvlw 81 (136)
T PF06423_consen 2 NREGIFSLPGYLAIYLIGVSLGRYILPPSSSSNSSSRRQWIKLLIKLLILSFIFWALYYLLNSYIEPVSRRLANLPYVLW 81 (136)
T ss_pred CcchhhhHHHHHHHHHHHHHHhhhhhCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHhcchHHHHH
Confidence 57999999999999999999999887654322 334456777777777777775467899999999999999
Q ss_pred HhHHHHHHHHHHHHHhhccCccc-----cchhhhhhchhHHHHHHHhhcChHH
Q 019970 263 TAGASGVLLAGIYFMVDVQGHRR-----VTMVFEWMGLHALMIYILVACNILP 310 (333)
Q Consensus 263 tsG~a~llla~~y~liDv~~~~~-----~~~pf~~~G~N~L~iYvl~~~~i~~ 310 (333)
+.+.....++.++.+-++....+ ....++.+.+|.|++|+++ +++.
T Consensus 82 v~a~n~~~l~~~~~i~~~~~~~~~~~~~~~~l~~aiN~N~L~~FLla--NllT 132 (136)
T PF06423_consen 82 VLAFNTFFLALYLLIELLLFRPKASYSKTPCLLDAINRNGLFVFLLA--NLLT 132 (136)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccHHHHHHcccccHHHHHH--HHHH
Confidence 99999888887666555544332 4667899999999999984 5554
No 4
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=98.04 E-value=5.2e-05 Score=69.41 Aligned_cols=119 Identities=23% Similarity=0.162 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHhcCccccccccccccccccceEEhhhHHHHHHHHHHHHHHHHHHhCCCCCccchhhhhhhhHHH
Q 019970 10 CYAIFPLYCWCFIGSYVQGGFFHGINNLKYGVDIAQIRWMGVLQRIAIAYLVAALCEIWLKGDGHVSSKLSLFRKYRGHW 89 (333)
Q Consensus 10 ~~~~~r~~~Lf~lGl~l~~~~~~~~~~l~~~~d~~~~Ri~GVLQRIal~Ylv~all~l~~~~~~~~~~~~~~~~~~~~q~ 89 (333)
-+.+.|.++|+++|++++... +....+.....||||+||+|+++++++. ..+ .+..+
T Consensus 71 ~~~~~R~~~l~~~g~~i~~~~--------~~~~~~~~i~~gIL~~ig~~~ll~~~~~-~~~--------------~~~~~ 127 (223)
T PF07786_consen 71 RKFLKRGLKLFLLGLLINLLT--------FFFFPEGFIYFGILQFIGLSMLLAALFL-RLP--------------RRALL 127 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--------HHhcCCceeehhHHHHHHHHHHHHHHHH-hcc--------------hhHHH
Confidence 456789999999999997531 1123355558899999999999988873 332 34555
Q ss_pred HHHHHHHHHHHHHHHcccCCCCCCCCcccCCCCCCcccccccCCCCCCCCCCChhhhhhhhhcCCCccccCccccccccc
Q 019970 90 VVALVLTTLYLLLLYGLYVPDWQYEFPVETSSSSPWIFNVTCGVRGSTGPACNAVGMIDRKILGIQHLYRKPIYSRTKQC 169 (333)
Q Consensus 90 ~~~~~lL~~y~~l~~~~~vP~~~~~~~~~gpgg~~~~~~~~~~~~g~~~~~~n~a~~IDr~vLG~~H~y~~~~~~~~~~~ 169 (333)
+.+++++++++.+... .. ++ + +...+| ++.
T Consensus 128 ~~~~~~~~~~~~l~~~--~~---------~~---------------------~-----~~~~~~---~~~---------- 157 (223)
T PF07786_consen 128 ILALLLLALSWLLSGP--VF---------GP---------------------P-----WLLWLG---LSS---------- 157 (223)
T ss_pred HHHHHHHHHHHHHhhh--hc---------Cc---------------------h-----HHHHhc---ccc----------
Confidence 5566666666654321 00 00 0 111122 111
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHHhccc
Q 019970 170 SINSPDYGPMPLDAPSWCQAPFDPEGLLSSVMATVTCLIGLHFGHLIVHFK 220 (333)
Q Consensus 170 ~~~~~~~g~~~~~~p~w~~~~fDPEGlLstlpai~t~llG~~aG~iL~~~~ 220 (333)
..+++||....+|-++..++|+.+|++..+..
T Consensus 158 -------------------~~~~~~~~~Pl~PW~~~~l~G~~~G~~~~~~~ 189 (223)
T PF07786_consen 158 -------------------RNFFSNGYFPLFPWLGFFLLGMALGRLFLRKG 189 (223)
T ss_pred -------------------cCCCcCCcCccHHHHHHHHHHHHHHHHHHHhc
Confidence 24688999999999999999999999998763
No 5
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=95.72 E-value=0.044 Score=47.90 Aligned_cols=57 Identities=19% Similarity=0.096 Sum_probs=46.8
Q ss_pred CcccccCCchhHHHHHhHHHHHHHHHHHHHhhccCccccchhhhhhchhHHHHHHHh
Q 019970 248 MHLNKALYSLSYTCLTAGASGVLLAGIYFMVDVQGHRRVTMVFEWMGLHALMIYILV 304 (333)
Q Consensus 248 ~PInK~LWT~SfVl~tsG~a~llla~~y~liDv~~~~~~~~pf~~~G~N~L~iYvl~ 304 (333)
.+.+....+....+.....++...+++..+.+..+.++...|+...|.-|++.|+.+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~a~~y~~l~~ll~~~~~~~~~~~~l~~~GrmaLT~Yi~q 101 (163)
T PF04235_consen 45 SPPAAHLSSVLYMLGGPLLALGYVALLILLCQKRPRQRLLRPLAAVGRMALTNYILQ 101 (163)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHhhHHHHHHHHH
Confidence 455555566666667777888888899999998777778999999999999999996
No 6
>PF01757 Acyl_transf_3: Acyltransferase family; InterPro: IPR002656 This entry contains a range of acyltransferase enzymes as well as yet uncharacterised proteins from Caenorhabditis elegans. It also includes the protein OatA. The pathogenic bacteria, Staphylococcus aureus, is able to cause persistent infections due to its ability to resist the immune defence system. Lysozyme, a cell wall-lytic enzyme, is one of the first defence compounds induced in serum and tissues after the onset of infection. S. aureus has complete resistance to lysozyme action by O-acetylating its peptidoglycan (PG) by O-acetyltransferase (OatA) [, ]. Staphylococcus bacteria are one of the only bacterial genera that are resistant to lysozyme and tend to colonise the skin and mucosa of humans and animals []. OatA is an integral membrane protein. This entry also includes NolL proteins. NolL-dependent acetylation is specific for the fucosyl penta-N-acetylglucosamine species. In addition, the NolL protein caused elevated production of lipo-chitin oligosaccharides (LCOs). The NolL protein obtained from Rhizobium loti (Mesorhizobium loti) functions as an acetyl transferase [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=86.54 E-value=2.8 Score=37.82 Aligned_cols=17 Identities=18% Similarity=0.501 Sum_probs=16.2
Q ss_pred hhhhhhchhHHHHHHHh
Q 019970 288 MVFEWMGLHALMIYILV 304 (333)
Q Consensus 288 ~pf~~~G~N~L~iYvl~ 304 (333)
++++..|.++..+|+.|
T Consensus 284 ~~l~~lg~~S~~iYl~H 300 (340)
T PF01757_consen 284 KILSFLGRYSYGIYLIH 300 (340)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68999999999999997
No 7
>COG2311 Predicted membrane protein [Function unknown]
Probab=81.86 E-value=28 Score=35.62 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhccCccccchhhhhhchhHHHHHHHh
Q 019970 267 SGVLLAGIYFMVDVQGHRRVTMVFEWMGLHALMIYILV 304 (333)
Q Consensus 267 a~llla~~y~liDv~~~~~~~~pf~~~G~N~L~iYvl~ 304 (333)
++...+++..+....+..+...+|...|.=|++.|++.
T Consensus 285 ~~gY~~li~ll~~~~~~~~~~~~~A~vGRmALTNYLlQ 322 (394)
T COG2311 285 ALGYASLVGLLWPKLRRGALLRAFAAVGRMALTNYLLQ 322 (394)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555554455557889999999999999995
No 8
>PRK10835 hypothetical protein; Provisional
Probab=80.83 E-value=14 Score=37.03 Aligned_cols=33 Identities=30% Similarity=0.324 Sum_probs=24.4
Q ss_pred HHHHHHhhccCccccchhhhhhchhHHHHHHHh
Q 019970 272 AGIYFMVDVQGHRRVTMVFEWMGLHALMIYILV 304 (333)
Q Consensus 272 a~~y~liDv~~~~~~~~pf~~~G~N~L~iYvl~ 304 (333)
+++-.+.+-++.+++.+++...|+-|++.|+..
T Consensus 277 ~~~~ll~~~~~~~~~~~~la~~GrmaLTnYl~Q 309 (373)
T PRK10835 277 ALIYGFWPQLSRWRLTLAIACVGRMALTNYLLQ 309 (373)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 334444454444567899999999999999985
No 9
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=79.02 E-value=11 Score=37.65 Aligned_cols=56 Identities=11% Similarity=-0.079 Sum_probs=36.7
Q ss_pred CcccccCCchhHHHHHhHHHHHHHHHHHHHhhccCccccchhhhhhchhHHHHHHHh
Q 019970 248 MHLNKALYSLSYTCLTAGASGVLLAGIYFMVDVQGHRRVTMVFEWMGLHALMIYILV 304 (333)
Q Consensus 248 ~PInK~LWT~SfVl~tsG~a~llla~~y~liDv~~~~~~~~pf~~~G~N~L~iYvl~ 304 (333)
.|.+|.-=++--++=-.+++.++..++...-.- -.+++.+|+...|+|+|-+|+.+
T Consensus 259 ~~~dK~~L~~~Rllhflala~lv~~l~~~~~~~-~~~~~~~~l~~~Gr~SL~VF~~~ 314 (358)
T PF10129_consen 259 YPFDKTDLGPLRLLHFLALAYLVAWLLPAGWRW-LRRRWLRPLILLGRHSLPVFCVG 314 (358)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHHHHhccccHh-HhhhhhhHHHHHccCchHHHHHH
Confidence 468898888888875555444433333211110 11356899999999999999985
No 10
>PF15345 TMEM51: Transmembrane protein 51
Probab=76.42 E-value=1.9 Score=40.84 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhhcccC--Cc----------------------ccccCCchhHHHHHhHHHHHHHHHHHHHhhccCc
Q 019970 229 WIILSSCLIGLGLSLDFVG--MH----------------------LNKALYSLSYTCLTAGASGVLLAGIYFMVDVQGH 283 (333)
Q Consensus 229 l~~~Gv~ll~lG~ll~~~~--~P----------------------InK~LWT~SfVl~tsG~a~llla~~y~liDv~~~ 283 (333)
+.++|+.|+++|.++- .| +| -.++=-|..|||+-+|.++++|++|.-+=|-|+.
T Consensus 9 L~AiG~Gml~LGiiM~-vW~~VPg~~~~~~~~~~~~n~~~~~~~~~ksKt~SVAyVLVG~Gv~LLLLSICL~IR~KRr~ 86 (233)
T PF15345_consen 9 LTAIGVGMLALGIIMI-VWNLVPGFSSGNKPTPQGSNSTEPSDGNLKSKTFSVAYVLVGSGVALLLLSICLSIRDKRRR 86 (233)
T ss_pred HHHHhHhHHHHhhHhe-eeeecccccCCCCCCCCCCCCcCCCCCcccceeEEEEEehhhHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888864 22 11 2233456679999999999999999999885543
No 11
>PF01889 DUF63: Membrane protein of unknown function DUF63; InterPro: IPR002749 These proteins of unknown function are found in archaebacteria and are probably transmembrane proteins.
Probab=55.95 E-value=1.4e+02 Score=29.10 Aligned_cols=31 Identities=10% Similarity=0.274 Sum_probs=21.3
Q ss_pred ccccCCchhHHHHHhHHHHHHHHHHHHHhhc
Q 019970 250 LNKALYSLSYTCLTAGASGVLLAGIYFMVDV 280 (333)
Q Consensus 250 InK~LWT~SfVl~tsG~a~llla~~y~liDv 280 (333)
.|.+.+.+.......+.+..+-++.|++...
T Consensus 136 ~~~~~~~~~~~~~v~~~a~~~t~~~~~~~~~ 166 (273)
T PF01889_consen 136 INEDIFNPYVLLIVLGLATIATALVWLLLRR 166 (273)
T ss_pred hcCCccccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566677777777777777766666666553
No 12
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=46.37 E-value=1.6e+02 Score=24.55 Aligned_cols=58 Identities=22% Similarity=0.308 Sum_probs=32.6
Q ss_pred CCCCchhhhhHHHHHHHHHHHHH---HHHhccc-cch-HHHHHHHHHHHHHHHHHHhhcccCCccccc
Q 019970 191 FDPEGLLSSVMATVTCLIGLHFG---HLIVHFK-DHR-DRMLNWIILSSCLIGLGLSLDFVGMHLNKA 253 (333)
Q Consensus 191 fDPEGlLstlpai~t~llG~~aG---~iL~~~~-~~~-~r~~~l~~~Gv~ll~lG~ll~~~~~PInK~ 253 (333)
.+++-+++.+.++ ++|...| .++...+ +-. +.+.+..+.-+..+.++.+.+ |+|.+..
T Consensus 39 ~~~~~~~~~~~~~---~ig~~~gl~s~if~~e~~s~~~~~iiHf~~~~~~~~~~~~~~g--W~~~~~~ 101 (136)
T PF11457_consen 39 ISVSSILSVLVAV---LIGAVFGLASLIFEIERWSLLKQTIIHFIITYAIFLILAYLLG--WFPLSVI 101 (136)
T ss_pred ccHHHHHHHHHHH---HHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHHHHHhC--CcchhhH
Confidence 3455566666552 4454444 3444422 222 233366666677777888876 6888754
No 13
>PF11255 DUF3054: Protein of unknown function (DUF3054); InterPro: IPR021414 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=42.63 E-value=1.7e+02 Score=24.66 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=46.0
Q ss_pred CCCCchhhhh-HHHHHHHHHHHHHHHHhcc-ccchHHHHHH--HHHHHHHHHHHHhhcccCCcccccCCchhHHHHHhHH
Q 019970 191 FDPEGLLSSV-MATVTCLIGLHFGHLIVHF-KDHRDRMLNW--IILSSCLIGLGLSLDFVGMHLNKALYSLSYTCLTAGA 266 (333)
Q Consensus 191 fDPEGlLstl-pai~t~llG~~aG~iL~~~-~~~~~r~~~l--~~~Gv~ll~lG~ll~~~~~PInK~LWT~SfVl~tsG~ 266 (333)
.+|.|++.|. |.++-.++|-......++. ++..++.... ..+ +.-..+|++++ . . .+...=.+||++++.+.
T Consensus 24 ~~~~~~l~Ta~PFl~Gw~~~~~~~~~~~~~~~~~~~~~~~~g~~~W-~~a~~vG~~LR-~-~-~~~~~~~~~FiiVa~~~ 99 (112)
T PF11255_consen 24 LSPAGVLRTAWPFLVGWLLGWPLLGAYRRDARGSPGRAWPTGVVVW-LVAVPVGMALR-A-L-LFGGGPAWSFIIVALVF 99 (112)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHH-HHHHHHHHHHH-H-H-HhCCCCCcchHHHHHHH
Confidence 5778888887 7766666665555444432 1222333221 112 22345677776 2 2 45555668999999998
Q ss_pred HHHHHHH
Q 019970 267 SGVLLAG 273 (333)
Q Consensus 267 a~llla~ 273 (333)
..+++..
T Consensus 100 ~~vlL~g 106 (112)
T PF11255_consen 100 LAVLLLG 106 (112)
T ss_pred HHHHHHH
Confidence 8877754
No 14
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=42.16 E-value=83 Score=26.14 Aligned_cols=25 Identities=16% Similarity=0.446 Sum_probs=18.2
Q ss_pred chhhhh--HHHHHHHHHHHHHHHHhcc
Q 019970 195 GLLSSV--MATVTCLIGLHFGHLIVHF 219 (333)
Q Consensus 195 GlLstl--pai~t~llG~~aG~iL~~~ 219 (333)
|++|+| .-++.+++|+..|++|.++
T Consensus 43 ~~~g~IG~~~v~pil~G~~lG~WLD~~ 69 (100)
T TIGR02230 43 GMFGLIGWSVAIPTLLGVAVGIWLDRH 69 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667777 3455788888888888764
No 15
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=37.42 E-value=1.4e+02 Score=28.06 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=21.7
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHHHHhc
Q 019970 190 PFDPEGLLSSVMATVTCLIGLHFGHLIVH 218 (333)
Q Consensus 190 ~fDPEGlLstlpai~t~llG~~aG~iL~~ 218 (333)
.+.||+.+.....+..+++|+.+.....+
T Consensus 168 ~~~~e~~l~N~~gl~~~~fg~~V~~~~~~ 196 (214)
T cd08764 168 NLPAEGVLGNFIGIVLVIFGGLVVYLVTE 196 (214)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHhccC
Confidence 45788888888888888888877766544
No 16
>COG3594 NolL Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]
Probab=37.37 E-value=2.3e+02 Score=28.55 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=29.8
Q ss_pred HHHhHHHHHHHHHHHHHhhccCccccchhhhhhchhHHHHHHHhhcChHHHhhh
Q 019970 261 CLTAGASGVLLAGIYFMVDVQGHRRVTMVFEWMGLHALMIYILVACNILPVLLQ 314 (333)
Q Consensus 261 l~tsG~a~llla~~y~liDv~~~~~~~~pf~~~G~N~L~iYvl~~~~i~~~~~~ 314 (333)
...+|+++..+..+...+|. ..++++..|.|++.+|.+| +++-..+.
T Consensus 240 ~~~~~l~~~~~~~~~~~~~~-----~~~~~~~lG~~TL~I~~lH--g~v~~~~~ 286 (343)
T COG3594 240 ALVLGLALNALVRFAAKIPQ-----LRKLVTKLGKNTLYIYLLH--GFVFKVLR 286 (343)
T ss_pred HHHHHHHHHHHHHHHHhccH-----HHHHHHHHhhhhHHHHHHH--HHHHHHHH
Confidence 34444555555444444442 4579999999999999997 34444433
No 17
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=36.56 E-value=30 Score=32.74 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=37.7
Q ss_pred cccccCCchhHHHHHhHHHHHHHHHHHHHhhccCccccchhhhhhchhH
Q 019970 249 HLNKALYSLSYTCLTAGASGVLLAGIYFMVDVQGHRRVTMVFEWMGLHA 297 (333)
Q Consensus 249 PInK~LWT~SfVl~tsG~a~llla~~y~liDv~~~~~~~~pf~~~G~N~ 297 (333)
+=+|++||-+.+.++.||+.+++. .|-+-..+..++...|++++|..+
T Consensus 62 ~~~k~~~~~~~i~lv~~W~v~~fL-~y~i~~~~~~~~~fDPyEILGl~p 109 (230)
T KOG0721|consen 62 VSPKSISTKRKVFLVVGWAVIAFL-IYKIMNSRRERQKFDPYEILGLDP 109 (230)
T ss_pred cCcccchhHHHHHHHHHHHHHHHH-HHHHhhhhHHhhcCCcHHhhCCCC
Confidence 455689999999999999976554 566666666667889999999765
No 18
>COG5062 Uncharacterized membrane protein [Function unknown]
Probab=33.13 E-value=42 Score=34.11 Aligned_cols=110 Identities=18% Similarity=0.248 Sum_probs=70.4
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHHhccccchHHHH-HHHHHHHHHHHHHHhhcccCCcccccCCchhHHHHHhHHHHHH
Q 019970 192 DPEGLLSSVMATVTCLIGLHFGHLIVHFKDHRDRML-NWIILSSCLIGLGLSLDFVGMHLNKALYSLSYTCLTAGASGVL 270 (333)
Q Consensus 192 DPEGlLstlpai~t~llG~~aG~iL~~~~~~~~r~~-~l~~~Gv~ll~lG~ll~~~~~PInK~LWT~SfVl~tsG~a~ll 270 (333)
+-|||.|++|-+..-+.|.-.|++....+..+++.. .+...-+..+.+=.+.+..... +.++....||++..-+=.+-
T Consensus 266 NrEGI~sll~yisIfl~g~~tg~vvf~~kpTr~~~wk~~~~~~af~lciylVfnf~s~s-sRRlaNlpfv~wi~~lh~f~ 344 (429)
T COG5062 266 NREGITSLLPYISIFLMGADTGKVVFKKKPTRKKAWKIIILYNAFFLCVYLVFNFYSTS-SRRLANLPFVMWIMLLHTFH 344 (429)
T ss_pred chhhhhhcchhhhheeeecccceEEecCCCchHHHHHHHHHHHHHHHHHHHHHhhcccc-hhhhcCccHHHHHHHHHHHH
Confidence 889999999999999999999998876654333222 2222212223333333422234 89999999999988776554
Q ss_pred HHHHHHHhhccC--ccccchhhhhhchhHHHHHHH
Q 019970 271 LAGIYFMVDVQG--HRRVTMVFEWMGLHALMIYIL 303 (333)
Q Consensus 271 la~~y~liDv~~--~~~~~~pf~~~G~N~L~iYvl 303 (333)
...|.+.|--- ..+-..-|+-.-+|-++++..
T Consensus 345 -lt~y~lfd~ts~~yn~v~~~fes~n~n~llvfs~ 378 (429)
T COG5062 345 -LTVYELFDRTSKIYNLVMHRFESKNLNFLLVFSN 378 (429)
T ss_pred -hheeeeeecccchhhhHHHHHHhcccchHHHHHH
Confidence 44688888422 123344566666666666654
No 19
>PRK03854 opgC glucans biosynthesis protein; Provisional
Probab=28.82 E-value=3e+02 Score=27.01 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=16.1
Q ss_pred chhhhhhchhHHHHHHHh
Q 019970 287 TMVFEWMGLHALMIYILV 304 (333)
Q Consensus 287 ~~pf~~~G~N~L~iYvl~ 304 (333)
..+++.+|.++--+|+.|
T Consensus 303 ~~~l~~lg~~Sy~iYL~H 320 (375)
T PRK03854 303 SPRVTYLVNASLFIYLVH 320 (375)
T ss_pred cHHHHHhhhhhhHHHHHH
Confidence 457899999999999997
No 20
>COG3083 Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]
Probab=27.51 E-value=3.9e+02 Score=28.67 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=45.8
Q ss_pred ChhhhhhhhhcCCCccccCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHHhccc-
Q 019970 142 NAVGMIDRKILGIQHLYRKPIYSRTKQCSINSPDYGPMPLDAPSWCQAPFDPEGLLSSVMATVTCLIGLHFGHLIVHFK- 220 (333)
Q Consensus 142 n~a~~IDr~vLG~~H~y~~~~~~~~~~~~~~~~~~g~~~~~~p~w~~~~fDPEGlLstlpai~t~llG~~aG~iL~~~~- 220 (333)
-.--++|+.++..-|+--.|..+.. ..+|+++.+ +-.|+ =+.-++|.| .+++++.+++..++.
T Consensus 98 ~tLLlvD~evf~rf~lHLn~vVW~L----lvnpe~~e~---S~dwq-------llf~s~p~I--~Ll~llfs~W~w~KlR 161 (600)
T COG3083 98 MTLLLVDSEVFQRFNLHLNPVVWEL----LVNPEQSEM---SRDWQ-------LLFASVPVI--LLLELLFSTWSWQKLR 161 (600)
T ss_pred HHHHhhhHHHHHHhcccccceEEEE----EECCCCccc---ccchh-------hhhhHHHHH--HHHHHHHHHHHHHHHh
Confidence 4556799999977666555554432 234444421 22232 134556666 677777777665432
Q ss_pred --cchHHHHHHHHHHHHHHHHH
Q 019970 221 --DHRDRMLNWIILSSCLIGLG 240 (333)
Q Consensus 221 --~~~~r~~~l~~~Gv~ll~lG 240 (333)
.+++|..+++.+-..+.+++
T Consensus 162 sl~r~rr~~r~l~a~f~~sfia 183 (600)
T COG3083 162 SLTRQRRFVRPLAAFFFCSFIA 183 (600)
T ss_pred hhhhhhhhhHHHHHHHHHHHHH
Confidence 34445666665555544443
No 21
>PF09664 DUF2399: Protein of unknown function C-terminus (DUF2399); InterPro: IPR024465 This domain is found in archaeal, bacterial and eukaryotic proteins. Its function is unknown.
Probab=26.37 E-value=19 Score=31.76 Aligned_cols=12 Identities=50% Similarity=0.971 Sum_probs=9.3
Q ss_pred CCCCCCCCCCch
Q 019970 185 SWCQAPFDPEGL 196 (333)
Q Consensus 185 ~w~~~~fDPEGl 196 (333)
.|+++.||||||
T Consensus 69 l~y~GDfDp~Gl 80 (152)
T PF09664_consen 69 LYYSGDFDPEGL 80 (152)
T ss_pred EEEecCCCHHHH
Confidence 445578999998
No 22
>PF05628 Borrelia_P13: Borrelia membrane protein P13; InterPro: IPR008420 Lyme borreliosis (or Lyme's disease) is one of the most common tick-borne diseases. It is caused by bacteria from the genus Borrelia. This family consists of P13 proteins from Borrelia species. P13 is a 13 kDa integral membrane protein which is post-translationally processed at both ends and modified by an unknown mechanism [].
Probab=26.17 E-value=2e+02 Score=25.26 Aligned_cols=81 Identities=12% Similarity=0.111 Sum_probs=52.3
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhhcccCCcccccCCchhHHHHHhHHHHHHH
Q 019970 192 DPEGLLSSVMATVTCLIGLHFGHLIVHFKDHRDRMLNWIILSSCLIGLGLSLDFVGMHLNKALYSLSYTCLTAGASGVLL 271 (333)
Q Consensus 192 DPEGlLstlpai~t~llG~~aG~iL~~~~~~~~r~~~l~~~Gv~ll~lG~ll~~~~~PInK~LWT~SfVl~tsG~a~lll 271 (333)
|-|-.-..+|...+.++|.-.|.+.+...-.-......-+.|+.++..|.+.+...--..-+.|+.+.++...|...++.
T Consensus 6 e~~k~~~l~P~LLNlFlgfGIGSFvqGD~igGg~~lg~~~lg~~L~~tG~~~~~~~~~~~~~~~~~g~~l~~iG~~tm~~ 85 (135)
T PF05628_consen 6 ESEKQTILVPFLLNLFLGFGIGSFVQGDYIGGGAVLGFDVLGGILILTGYIININANSKDDKMSITGSILMGIGGLTMAA 85 (135)
T ss_pred hhhccchhHHHHHHHHHhcCcchhhccceeCchhhhhHHHHhHHHHHhhheeecccccccccccchhHHHHHHhHHHHHH
Confidence 33434455999999999999999887643111233345677778888888876211112234588888888888665544
Q ss_pred H
Q 019970 272 A 272 (333)
Q Consensus 272 a 272 (333)
.
T Consensus 86 s 86 (135)
T PF05628_consen 86 S 86 (135)
T ss_pred H
Confidence 3
No 23
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=24.95 E-value=1.4e+02 Score=22.58 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=23.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHhh
Q 019970 196 LLSSVMATVTCLIGLHFGHLIVHFK-DHRDRMLNWIILSSCLIGLGLSL 243 (333)
Q Consensus 196 lLstlpai~t~llG~~aG~iL~~~~-~~~~r~~~l~~~Gv~ll~lG~ll 243 (333)
++|-+....+...|+..|++=+++- +..++=..++..|+++-.++.++
T Consensus 10 i~~~~~~~~~~i~aiilG~ial~~i~r~~~~G~g~A~aGivlG~i~~~~ 58 (62)
T PF13828_consen 10 ILGLFLCGLLGIVAIILGHIALRQIRRSGQRGRGMAIAGIVLGYIGIVL 58 (62)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH
Confidence 4443332345555666665544331 11122235666777766655543
No 24
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=24.31 E-value=2e+02 Score=30.95 Aligned_cols=26 Identities=31% Similarity=0.234 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhcc-cCCcccccC
Q 019970 229 WIILSSCLIGLGLSLDF-VGMHLNKAL 254 (333)
Q Consensus 229 l~~~Gv~ll~lG~ll~~-~~~PInK~L 254 (333)
++.+|+..++.|++.+- ++.+++.-.
T Consensus 396 l~~~gi~sii~G~lyG~fFG~~~~~~~ 422 (646)
T PRK05771 396 LIYLGISTIIWGLLTGSFFGFSLPIFL 422 (646)
T ss_pred HHHHHHHHHHHHHHHHhHhcCcccccc
Confidence 35677777777877762 234444433
No 25
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=23.89 E-value=54 Score=29.05 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=24.1
Q ss_pred ccccccccccceEEhhhHHHHHHHHHHHH
Q 019970 35 NNLKYGVDIAQIRWMGVLQRIAIAYLVAA 63 (333)
Q Consensus 35 ~~l~~~~d~~~~Ri~GVLQRIal~Ylv~a 63 (333)
++++.|+.-|.+|.--||.|||+.-+|--
T Consensus 98 ~tfsDGVPkEgl~~q~VL~RIgvm~LIr~ 126 (145)
T PF06461_consen 98 DTFSDGVPKEGLRRQDVLVRIGVMSLIRK 126 (145)
T ss_pred CccCCCCccCCCcHHHHHHHHHHHHHHHH
Confidence 56777889999999999999999865543
No 26
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=22.05 E-value=4.6e+02 Score=27.92 Aligned_cols=70 Identities=6% Similarity=0.056 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhcccCCcccccCCc--hhHHHHHhHHHHHHHHHHHHHhhccCccccchhhhhhchhHHHHHHHh
Q 019970 230 IILSSCLIGLGLSLDFVGMHLNKALYS--LSYTCLTAGASGVLLAGIYFMVDVQGHRRVTMVFEWMGLHALMIYILV 304 (333)
Q Consensus 230 ~~~Gv~ll~lG~ll~~~~~PInK~LWT--~SfVl~tsG~a~llla~~y~liDv~~~~~~~~pf~~~G~N~L~iYvl~ 304 (333)
+.+++..++-|.++ ..+--..++|- .+||++.+.+.+++=.+-.-+-....... .=-++|.|+.+++++.
T Consensus 331 l~l~v~s~~~~gll--~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~---~aLvFGiNtfvAl~LQ 402 (511)
T TIGR00806 331 LLIAVVSAIQAGLV--FWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKEL---CALVFGINTFVATALK 402 (511)
T ss_pred HHHHHHHHHHHHHh--hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---eEEEEecHHHHHHHHH
Confidence 34444433333332 23455556664 57788777777665444444433222221 2257999999999984
No 27
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=21.86 E-value=4.7e+02 Score=26.94 Aligned_cols=53 Identities=6% Similarity=0.107 Sum_probs=27.6
Q ss_pred cccccCCc--hhHHHHHhHHHHHHHHHHHHHhhccCccccchhhhhhchhHHHHHHHh
Q 019970 249 HLNKALYS--LSYTCLTAGASGVLLAGIYFMVDVQGHRRVTMVFEWMGLHALMIYILV 304 (333)
Q Consensus 249 PInK~LWT--~SfVl~tsG~a~llla~~y~liDv~~~~~~~~pf~~~G~N~L~iYvl~ 304 (333)
...+++|- .+|+++-+..-+++=.+.+-+---.... ..=-++|.|+.++.++.
T Consensus 335 ~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e---~yaLVFGiNtf~Al~LQ 389 (412)
T PF01770_consen 335 SFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEE---RYALVFGINTFVALVLQ 389 (412)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---ceeeeeeeHHHHHHHHH
Confidence 44444442 3555555554444333333332211211 23357999999999884
No 28
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=21.60 E-value=3.8e+02 Score=27.54 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=35.8
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhhc
Q 019970 192 DPEGLLSSVMATVTCLIGLHFGHLIVHFKDHRDRMLNWIILSSCLIGLGLSLD 244 (333)
Q Consensus 192 DPEGlLstlpai~t~llG~~aG~iL~~~~~~~~r~~~l~~~Gv~ll~lG~ll~ 244 (333)
---|+|+|+|-++-.++...+.++=|+...+ +.+..+.+++.+|.+++
T Consensus 47 s~aGlLTtLPll~fg~~ap~a~~Lar~~g~e-----r~l~~~Llli~~G~~iR 94 (395)
T COG2807 47 SVAGLLTTLPLLAFGLFAPAAPRLARRFGEE-----RSLFLALLLIAAGILIR 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhH-----HHHHHHHHHHHHHHHHH
Confidence 4458999999999999998888776654322 45667777777788777
No 29
>PRK13499 rhamnose-proton symporter; Provisional
Probab=21.57 E-value=1.1e+02 Score=30.70 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhh
Q 019970 200 VMATVTCLIGLHFGHLIVHFKDHRDRMLNWIILSSCLIGLGLSL 243 (333)
Q Consensus 200 lpai~t~llG~~aG~iL~~~~~~~~r~~~l~~~Gv~ll~lG~ll 243 (333)
.+-++.++.|+ ++++.|+..+|-.+....|.+++++|..+
T Consensus 299 ~~ViistlwGi----~lkE~K~a~~k~~~~l~~G~vliI~g~~l 338 (345)
T PRK13499 299 FYVLCGNLWGL----VLKEWKGASRRPVRVLSLGCVVIILAANI 338 (345)
T ss_pred HHHHHHHHhhh----hhhhccCCCccchhHHHHHHHHHHHHHHH
Confidence 33344444444 36666664455556777777777777654
No 30
>PF15050 SCIMP: SCIMP protein
Probab=21.39 E-value=1.3e+02 Score=26.09 Aligned_cols=43 Identities=5% Similarity=-0.042 Sum_probs=34.2
Q ss_pred HHHHhHHHHHHHHHHHHHhhccCccccchhhhhhchhHHHHHH
Q 019970 260 TCLTAGASGVLLAGIYFMVDVQGHRRVTMVFEWMGLHALMIYI 302 (333)
Q Consensus 260 Vl~tsG~a~llla~~y~liDv~~~~~~~~pf~~~G~N~L~iYv 302 (333)
++++.+++++++++|-|..--.+++..++|.+==+.+-=-+|=
T Consensus 17 I~vS~~lglIlyCvcR~~lRqGkkweiakp~k~~~rdeEkmYE 59 (133)
T PF15050_consen 17 ILVSVVLGLILYCVCRWQLRQGKKWEIAKPLKQKQRDEEKMYE 59 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccceeccchhhhcccHHHHHH
Confidence 4556777889999999998866666788999988888777773
No 31
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=20.40 E-value=2.7e+02 Score=29.85 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=33.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcc---------------------ccchHHHHHH-HHHHHHHHHHHHhhc
Q 019970 197 LSSVMATVTCLIGLHFGHLIVHF---------------------KDHRDRMLNW-IILSSCLIGLGLSLD 244 (333)
Q Consensus 197 Lstlpai~t~llG~~aG~iL~~~---------------------~~~~~r~~~l-~~~Gv~ll~lG~ll~ 244 (333)
+-...+++++++|++.|.++-.. .+....++.+ +++|++.+.+|.++.
T Consensus 395 il~~~gi~sii~G~lyG~fFG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lsl~iGvi~i~~g~~l~ 464 (646)
T PRK05771 395 ILIYLGISTIIWGLLTGSFFGFSLPIFLPGGYLELPEGYPSLSTENDVMTILIISLLIGVIHLFLGLLLG 464 (646)
T ss_pred HHHHHHHHHHHHHHHHHhHhcCccccccccccccccCCccccCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33567888999999999875211 1112334444 789999999999997
No 32
>PF07694 5TM-5TMR_LYT: 5TMR of 5TMR-LYT; InterPro: IPR011620 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the transmembrane region of the 5TM-Lyt (5TM Receptors of the LytS-YhcK type) histidine kinase []. The two-component regulatory system LytS/LytT probably regulates genes involved in cell wall metabolism. ; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0007047 cellular cell wall organization, 0016021 integral to membrane
Probab=20.34 E-value=4.6e+02 Score=22.36 Aligned_cols=41 Identities=7% Similarity=0.145 Sum_probs=16.5
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Q 019970 194 EGLLSSVMATVTCLIGLHFGHLIVHFKDHRDRMLNWIILSSC 235 (333)
Q Consensus 194 EGlLstlpai~t~llG~~aG~iL~~~~~~~~r~~~l~~~Gv~ 235 (333)
++....+..+...+.+....+..++++ ++.+.......+++
T Consensus 81 ~~~~~~i~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~~l~ 121 (169)
T PF07694_consen 81 TAIPAFIIIILIGILAGLISRFFRRKS-KKIKLLYLFLLSLV 121 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcc-hhccHHHHHHHHHH
Confidence 334444444433334444444444322 23333344444443
No 33
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=20.24 E-value=4.8e+02 Score=21.21 Aligned_cols=54 Identities=9% Similarity=0.050 Sum_probs=34.4
Q ss_pred cccccCCchhHHHHHhHHHHHHHHHHHHHhhcc---CccccchhhhhhchhHHHHHHH
Q 019970 249 HLNKALYSLSYTCLTAGASGVLLAGIYFMVDVQ---GHRRVTMVFEWMGLHALMIYIL 303 (333)
Q Consensus 249 PInK~LWT~SfVl~tsG~a~llla~~y~liDv~---~~~~~~~pf~~~G~N~L~iYvl 303 (333)
..+...-...|.+.+++++.+. ++.+.+++.. ...+...+...++.+.+...+.
T Consensus 34 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~il~ 90 (144)
T PF01284_consen 34 IYGGSPSACGFALFVAVLSFLY-TLIFLLLYLFSLKYRPRIPWPLVEFIFDAVFAILW 90 (144)
T ss_pred ccCCCCcchhHHHHHHHHHHHH-HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH
Confidence 4455566778888888888766 5555555542 2233456666777777776654
No 34
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=20.09 E-value=1.7e+02 Score=20.33 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=20.8
Q ss_pred HHHHhHHHHHHHHHHHHHhhccCcc
Q 019970 260 TCLTAGASGVLLAGIYFMVDVQGHR 284 (333)
Q Consensus 260 Vl~tsG~a~llla~~y~liDv~~~~ 284 (333)
+-+++|++.+.+.++|+..-.|+.+
T Consensus 10 v~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 10 VAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccc
Confidence 4578899999999999998877754
Done!