Query 019970
Match_columns 333
No_of_seqs 134 out of 492
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 09:49:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p5n_A RIBU, riboflavin uptake 16.0 5E+02 0.017 21.9 8.9 51 192-244 81-131 (189)
2 2xut_A Proton/peptide symporte 15.2 4.3E+02 0.015 24.6 7.9 25 195-219 57-81 (524)
3 1pw4_A Glycerol-3-phosphate tr 12.8 7.2E+02 0.025 22.1 8.9 26 194-219 64-89 (451)
4 1jb0_J Photosystem 1 reaction 12.7 1.6E+02 0.0054 19.8 2.8 23 196-218 7-29 (41)
5 4ev6_A Magnesium transport pro 12.0 6.6E+02 0.023 22.9 8.1 50 225-276 278-332 (339)
6 1p58_A Major envelope protein 11.3 2.7E+02 0.0091 28.1 5.1 64 195-272 427-490 (495)
7 4aps_A DI-OR tripeptide H+ sym 10.1 3.5E+02 0.012 24.8 5.4 52 192-243 319-370 (491)
8 4aw6_A CAAX prenyl protease 1 8.8 4.4E+02 0.015 26.2 5.7 80 248-331 153-240 (482)
9 2iub_A CORA, divalent cation t 7.9 8.6E+02 0.029 22.4 7.2 45 224-270 301-350 (363)
10 3o7q_A L-fucose-proton symport 7.5 1E+03 0.035 21.0 7.3 25 195-219 64-88 (438)
No 1
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=16.00 E-value=5e+02 Score=21.91 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=26.2
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhhc
Q 019970 192 DPEGLLSSVMATVTCLIGLHFGHLIVHFKDHRDRMLNWIILSSCLIGLGLSLD 244 (333)
Q Consensus 192 DPEGlLstlpai~t~llG~~aG~iL~~~~~~~~r~~~l~~~Gv~ll~lG~ll~ 244 (333)
+|-|.+.+ .++....|+.+|.+.++.++.++.+...++..+++.+.+.+++
T Consensus 81 ~~~g~~~~--~l~~~~~g~~~~~~y~k~~~~~~~~~~~i~G~~~~~i~~~~~n 131 (189)
T 3p5n_A 81 DPVGPFAN--FLAGASFLLTAYAIYKNKRSTKSLITGLIIATIVMTIVLSILN 131 (189)
T ss_dssp CSSHHHHH--HHHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHH--HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454443 4455778888887776544332222222333334455566665
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=15.20 E-value=4.3e+02 Score=24.57 Aligned_cols=25 Identities=12% Similarity=0.013 Sum_probs=20.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhcc
Q 019970 195 GLLSSVMATVTCLIGLHFGHLIVHF 219 (333)
Q Consensus 195 GlLstlpai~t~llG~~aG~iL~~~ 219 (333)
|++.++..+...+.....|++..+.
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l~dr~ 81 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWIADRF 81 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888887665
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=12.77 E-value=7.2e+02 Score=22.12 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=21.7
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHhcc
Q 019970 194 EGLLSSVMATVTCLIGLHFGHLIVHF 219 (333)
Q Consensus 194 EGlLstlpai~t~llG~~aG~iL~~~ 219 (333)
-|++.++..+...+.....|.+..+.
T Consensus 64 ~g~~~~~~~~~~~~~~~~~G~l~dr~ 89 (451)
T 1pw4_A 64 LGFALSGISIAYGFSKFIMGSVSDRS 89 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence 37889999999999899999888665
No 4
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=12.67 E-value=1.6e+02 Score=19.78 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=19.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhc
Q 019970 196 LLSSVMATVTCLIGLHFGHLIVH 218 (333)
Q Consensus 196 lLstlpai~t~llG~~aG~iL~~ 218 (333)
-|||-|-+++.-+++.||.++--
T Consensus 7 yLstAPVla~~w~~~tAg~lIEi 29 (41)
T 1jb0_J 7 YLSTAPVLAAIWMTITAGILIEF 29 (41)
T ss_dssp HTTBHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHH
Confidence 38999999999999999987743
No 5
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=12.04 E-value=6.6e+02 Score=22.93 Aligned_cols=50 Identities=10% Similarity=0.067 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcccC-----CcccccCCchhHHHHHhHHHHHHHHHHHH
Q 019970 225 RMLNWIILSSCLIGLGLSLDFVG-----MHLNKALYSLSYTCLTAGASGVLLAGIYF 276 (333)
Q Consensus 225 r~~~l~~~Gv~ll~lG~ll~~~~-----~PInK~LWT~SfVl~tsG~a~llla~~y~ 276 (333)
.++.+.+++++++...++.+.++ +|--+ |.-.|..+.+.+..+..+..++
T Consensus 278 ~mk~LTiit~IflP~T~IaGiyGMNf~~mPel~--~~~gy~~~l~~m~~~~~~~~~~ 332 (339)
T 4ev6_A 278 IMKILTMVTTIFAVPMWITGIYGMNFSYLPLAN--NPQGFWLVMALMVVIIMIFVYI 332 (339)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHTTCCCSCCTTSS--CTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcCCCCCCcc--CchHHHHHHHHHHHHHHHHHHH
Confidence 34456666666655555544222 45443 6667766665555444444333
No 6
>1p58_A Major envelope protein E; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=11.27 E-value=2.7e+02 Score=28.09 Aligned_cols=64 Identities=19% Similarity=0.291 Sum_probs=43.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhhcccCCcccccCCchhHHHHHhHHHHHHHH
Q 019970 195 GLLSSVMATVTCLIGLHFGHLIVHFKDHRDRMLNWIILSSCLIGLGLSLDFVGMHLNKALYSLSYTCLTAGASGVLLA 272 (333)
Q Consensus 195 GlLstlpai~t~llG~~aG~iL~~~~~~~~r~~~l~~~Gv~ll~lG~ll~~~~~PInK~LWT~SfVl~tsG~a~llla 272 (333)
|+++++.=.++..+|-....++--- +...| +++|.++ .|+.+|++--|.|-+++..|.-++.|+
T Consensus 427 g~f~sigKavh~vfg~~F~~lFGG~-sw~~k-----------ilig~ll--~WlG~n~rn~t~s~~~l~~G~ill~l~ 490 (495)
T 1p58_A 427 GVFTSIGKALHQVFGAIYGAAFSGV-SWTMK-----------ILIGVII--TWIGMNSRSTSLSVSLVLVGIVTLYLG 490 (495)
T ss_pred chHHHHHHHHHHHHHHHHHHhhcch-HHHHH-----------HHHHHHH--heEEeccCCchHHHHHHHHHHHhheee
Confidence 6888887667777776555444211 11111 2345554 478999999999999999998777665
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=10.08 E-value=3.5e+02 Score=24.85 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=30.4
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhh
Q 019970 192 DPEGLLSSVMATVTCLIGLHFGHLIVHFKDHRDRMLNWIILSSCLIGLGLSL 243 (333)
Q Consensus 192 DPEGlLstlpai~t~llG~~aG~iL~~~~~~~~r~~~l~~~Gv~ll~lG~ll 243 (333)
.+.|++.++.++...+.+...|++..+..+++......+..|.++..++.++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~ 370 (491)
T 4aps_A 319 FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLL 370 (491)
T ss_dssp SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHH
Confidence 3558888999998888888888876544322111122334455555555443
No 8
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=8.77 E-value=4.4e+02 Score=26.16 Aligned_cols=80 Identities=9% Similarity=0.169 Sum_probs=45.2
Q ss_pred CcccccCCchhH-------HHHHhHHHHHHHHHHHHHhhccCccccch-hhhhhchhHHHHHHHhhcChHHHhhhcceec
Q 019970 248 MHLNKALYSLSY-------TCLTAGASGVLLAGIYFMVDVQGHRRVTM-VFEWMGLHALMIYILVACNILPVLLQGFYWR 319 (333)
Q Consensus 248 ~PInK~LWT~Sf-------Vl~tsG~a~llla~~y~liDv~~~~~~~~-pf~~~G~N~L~iYvl~~~~i~~~~~~~~~~~ 319 (333)
...||+=+.. | .+++.-+...++++++++++..+..+|.. ....++.+-+..++- |.++..+++. ...
T Consensus 153 ~Gfnk~t~~~-f~~D~~k~~~l~~vi~~pl~~~~~~ii~~~g~~~wl~~w~~~~~~~l~~~~iy--P~~I~PLfnk-~~P 228 (482)
T 4aw6_A 153 HGFNQQTLGF-FMKDAIKKFVVTQCILLPVSSLLLYIIKIGGDYFFIYAWLFTLVVSLVLVTIY--ADYIAPLFDK-FTP 228 (482)
T ss_dssp TTCBCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHH--HHHTHHHHSC-EEE
T ss_pred cCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH--HHHHHHHcCC-Ccc
Confidence 6788864432 3 24455566667888999999766544422 223333443333333 4444445554 345
Q ss_pred CCCcchhhhhhc
Q 019970 320 QPQNNILRLIGI 331 (333)
Q Consensus 320 ~~~~~~~~~~~~ 331 (333)
.|+..|.+-||+
T Consensus 229 l~dg~L~~~Ie~ 240 (482)
T 4aw6_A 229 LPEGKLKEEIEV 240 (482)
T ss_dssp CCSSHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 777777776653
No 9
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=7.86 E-value=8.6e+02 Score=22.41 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccC-----CcccccCCchhHHHHHhHHHHHH
Q 019970 224 DRMLNWIILSSCLIGLGLSLDFVG-----MHLNKALYSLSYTCLTAGASGVL 270 (333)
Q Consensus 224 ~r~~~l~~~Gv~ll~lG~ll~~~~-----~PInK~LWT~SfVl~tsG~a~ll 270 (333)
+.++.+.+++++++.+-++.+.++ +|--+ |.-.|..+.+.+.++.
T Consensus 301 ~imk~LTiit~IflP~T~IaGiyGMNf~~mPel~--~~~Gy~~~l~~m~~i~ 350 (363)
T 2iub_A 301 EVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELR--WKWGYPVVLAVMGVIA 350 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCC----------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc--CcHHHHHHHHHHHHHH
Confidence 344567788888887777776432 45433 5555655444443333
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=7.45 E-value=1e+03 Score=20.98 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhcc
Q 019970 195 GLLSSVMATVTCLIGLHFGHLIVHF 219 (333)
Q Consensus 195 GlLstlpai~t~llG~~aG~iL~~~ 219 (333)
|++.++..+..++.....|.+..+.
T Consensus 64 g~~~~~~~~~~~i~~~~~G~l~dr~ 88 (438)
T 3o7q_A 64 GLIQSAFYFGYFIIPIPAGILMKKL 88 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 7899999999899999999888765
Done!