Query 019970
Match_columns 333
No_of_seqs 134 out of 492
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 09:49:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019970.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019970hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0j_ f.23.18.1 (J:) Subunit 20.3 37 0.0027 21.2 2.8 22 196-217 7-28 (41)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 19.2 1.4E+02 0.0099 24.6 7.4 26 195-220 62-87 (447)
3 d1v54c_ f.25.1.1 (C:) Mitochon 17.0 1.9E+02 0.014 23.9 7.9 74 190-264 121-200 (259)
4 d1m56c_ f.25.1.1 (C:) Bacteria 13.8 2.4E+02 0.017 23.2 7.6 18 247-264 189-206 (265)
5 d1pv7a_ f.38.1.2 (A:) Lactose 7.9 2E+02 0.015 22.5 4.8 26 195-220 46-71 (417)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 6.1 6E+02 0.044 20.1 9.5 29 191-219 282-312 (447)
7 d2r6gg1 f.58.1.1 (G:7-296) Mal 5.8 2.4E+02 0.018 22.7 4.2 31 197-227 85-115 (290)
8 d2pc6a2 d.58.18.6 (A:1-77) Ace 5.7 1.1E+02 0.0082 21.1 1.5 10 49-58 13-22 (77)
9 d2f1fa1 d.58.18.6 (A:2-77) Ace 5.4 1.2E+02 0.0087 20.9 1.5 10 49-58 12-21 (76)
10 d1ctda_ a.39.1.5 (A:) Troponin 5.2 58 0.0042 19.3 -0.3 14 140-153 14-27 (34)
No 1
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=20.28 E-value=37 Score=21.19 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHh
Q 019970 196 LLSSVMATVTCLIGLHFGHLIV 217 (333)
Q Consensus 196 lLstlpai~t~llG~~aG~iL~ 217 (333)
-|||-|-+++..++..||.++.
T Consensus 7 ylstAPVla~~w~~~tAG~lIE 28 (41)
T d1jb0j_ 7 YLSTAPVLAAIWMTITAGILIE 28 (41)
T ss_dssp HTTBHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHH
Confidence 3899999999999999998774
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=19.19 E-value=1.4e+02 Score=24.58 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=22.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhccc
Q 019970 195 GLLSSVMATVTCLIGLHFGHLIVHFK 220 (333)
Q Consensus 195 GlLstlpai~t~llG~~aG~iL~~~~ 220 (333)
|++.++..+...+.....|.+..+..
T Consensus 62 g~~~s~~~~~~~~~~~~~G~l~Dr~g 87 (447)
T d1pw4a_ 62 GFALSGISIAYGFSKFIMGSVSDRSN 87 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88999999988888899998887653
No 3
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.98 E-value=1.9e+02 Score=23.88 Aligned_cols=74 Identities=15% Similarity=0.204 Sum_probs=36.9
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHHhhc-----ccCCcccccCCchhHHHHH
Q 019970 190 PFDPEGLLSSVMATVTCLIGLHFGHLIVHF-KDHRDRMLNWIILSSCLIGLGLSLD-----FVGMHLNKALYSLSYTCLT 263 (333)
Q Consensus 190 ~fDPEGlLstlpai~t~llG~~aG~iL~~~-~~~~~r~~~l~~~Gv~ll~lG~ll~-----~~~~PInK~LWT~SfVl~t 263 (333)
+.||.++ ..+++++....|+.+..-.+.- ++++++...++...+++.++=.... ...+.++.+...++|-+.|
T Consensus 121 ~~~~~~l-pllnT~vLl~Ss~t~~~A~~~~~~~~~~~~~~~l~~t~~lg~~Fl~~q~~Ey~~~~~~~~~~~~gS~ff~lT 199 (259)
T d1v54c_ 121 PLNPLEV-PLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVAT 199 (259)
T ss_dssp CCCTTSH-HHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHHH
T ss_pred ccchhhh-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCcchHHHHHH
Confidence 4566643 3455555555565544333222 2333444444444443332222211 1236778888888887777
Q ss_pred h
Q 019970 264 A 264 (333)
Q Consensus 264 s 264 (333)
+
T Consensus 200 G 200 (259)
T d1v54c_ 200 G 200 (259)
T ss_dssp H
T ss_pred H
Confidence 5
No 4
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=13.79 E-value=2.4e+02 Score=23.21 Aligned_cols=18 Identities=11% Similarity=0.288 Sum_probs=14.2
Q ss_pred CCcccccCCchhHHHHHh
Q 019970 247 GMHLNKALYSLSYTCLTA 264 (333)
Q Consensus 247 ~~PInK~LWT~SfVl~ts 264 (333)
...++-+.+.++|-+.|+
T Consensus 189 ~~~~~~~~~gs~ff~lTG 206 (265)
T d1m56c_ 189 AFGFAGNIYGANFFMATG 206 (265)
T ss_dssp SSCSSSSHHHHHHHHHHH
T ss_pred CCCcccchhHHHHHHHHH
Confidence 467888888888888775
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=7.93 E-value=2e+02 Score=22.47 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=22.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhccc
Q 019970 195 GLLSSVMATVTCLIGLHFGHLIVHFK 220 (333)
Q Consensus 195 GlLstlpai~t~llG~~aG~iL~~~~ 220 (333)
|++.++..+...+.....|.+..+..
T Consensus 46 g~i~s~~~l~~~i~~~~~G~l~Dr~g 71 (417)
T d1pv7a_ 46 GIIFAAISLFSLLFQPLFGLLSDKLG 71 (417)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 78999999999999999999887653
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=6.13 E-value=6e+02 Score=20.11 Aligned_cols=29 Identities=10% Similarity=-0.038 Sum_probs=18.0
Q ss_pred CCCC--chhhhhHHHHHHHHHHHHHHHHhcc
Q 019970 191 FDPE--GLLSSVMATVTCLIGLHFGHLIVHF 219 (333)
Q Consensus 191 fDPE--GlLstlpai~t~llG~~aG~iL~~~ 219 (333)
+|++ +...++..+......+..|.+..+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 312 (447)
T d1pw4a_ 282 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKV 312 (447)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccchhhhhhhcchhhhhhhhhhhhhhhhhc
Confidence 3444 5666667766666666666666544
No 7
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=5.85 E-value=2.4e+02 Score=22.71 Aligned_cols=31 Identities=6% Similarity=0.027 Sum_probs=21.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHhccccchHHHH
Q 019970 197 LSSVMATVTCLIGLHFGHLIVHFKDHRDRML 227 (333)
Q Consensus 197 Lstlpai~t~llG~~aG~iL~~~~~~~~r~~ 227 (333)
++.+.++.++.+|+.++..+.+.+...++..
T Consensus 85 ~a~~~~~~~~~ig~~~a~~l~r~~~~~~~~~ 115 (290)
T d2r6gg1 85 VAGISAIGIVALSTTCAYAFARMRFPGKATL 115 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCTTSHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhhhhhHHHH
Confidence 3444677788899999998876654444443
No 8
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}
Probab=5.65 E-value=1.1e+02 Score=21.07 Aligned_cols=10 Identities=40% Similarity=0.491 Sum_probs=8.1
Q ss_pred hhhHHHHHHH
Q 019970 49 MGVLQRIAIA 58 (333)
Q Consensus 49 ~GVLQRIal~ 58 (333)
||||.||+-.
T Consensus 13 pGvL~Ris~l 22 (77)
T d2pc6a2 13 AGALSRVAGL 22 (77)
T ss_dssp TTHHHHHHHH
T ss_pred ccHHHHHHHH
Confidence 7999998754
No 9
>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}
Probab=5.44 E-value=1.2e+02 Score=20.89 Aligned_cols=10 Identities=30% Similarity=0.361 Sum_probs=8.0
Q ss_pred hhhHHHHHHH
Q 019970 49 MGVLQRIAIA 58 (333)
Q Consensus 49 ~GVLQRIal~ 58 (333)
||||.||+-.
T Consensus 12 ~GVL~Risgl 21 (76)
T d2f1fa1 12 SGALSRVIGL 21 (76)
T ss_dssp TTHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 7999998643
No 10
>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=5.19 E-value=58 Score=19.33 Aligned_cols=14 Identities=50% Similarity=0.525 Sum_probs=11.5
Q ss_pred CCChhhhhhhhhcC
Q 019970 140 ACNAVGMIDRKILG 153 (333)
Q Consensus 140 ~~n~a~~IDr~vLG 153 (333)
+.|+-+||||.=|+
T Consensus 14 DkNaDGyiD~eEl~ 27 (34)
T d1ctda_ 14 DKNADGYIDIEELG 27 (34)
T ss_dssp CCSSSSCBCHHHHH
T ss_pred ccCCcccccHHHHH
Confidence 46899999998775
Done!