BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019971
(333 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SH88|RRS1_ARATH Ribosome biogenesis regulatory protein homolog OS=Arabidopsis
thaliana GN=At2g37990 PE=2 SV=2
Length = 318
Score = 452 bits (1163), Expect = e-126, Method: Compositional matrix adjust.
Identities = 230/325 (70%), Positives = 262/325 (80%), Gaps = 12/325 (3%)
Query: 1 MESQNQYEVDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTED 60
ME++ Y+VD+GNLLAFN +H FPS PSSR ELVKE L EGTKLVQ IA++LFN PSTE
Sbjct: 5 METEQIYQVDVGNLLAFNPNHRFPSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTET 64
Query: 61 VDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRF 120
DGPIV LPPPTTKLPR KH+P+PKPPTKWE FA KKGI+KRKK+KVVWDEQT +KRR
Sbjct: 65 NDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRRH 124
Query: 121 GYDRVDDDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPS 180
GYDRV+DD DVPIIEAK +DEPG DPFAKR ++KKKRV KQ+KNRLQNLK A K GALPS
Sbjct: 125 GYDRVNDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALPS 184
Query: 181 HVQLAATALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKHR 240
HVQLAAT+LPI+GT+A PKK K ELGDVAG+AATSTASGGKFDKK+PGEK PK QGKH
Sbjct: 185 HVQLAATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPPKKQGKHH 244
Query: 241 KFLPVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVTAYNVKREKKQRLKHNKNV 300
K+LPVV G G + EKEQT+ VL+K+FSKHSHEILNV KA+ YNVK+EKK+
Sbjct: 245 KYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKKKS------- 297
Query: 301 EDKSLSTSNKLKPKKQLNKKSAKKG 325
S+KLKPKK + KK A K
Sbjct: 298 -----GRSDKLKPKKDITKKPANKA 317
>sp|Q2KIH4|RRS1_BOVIN Ribosome biogenesis regulatory protein homolog OS=Bos taurus
GN=RRS1 PE=2 SV=1
Length = 365
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 144/247 (58%), Gaps = 25/247 (10%)
Query: 6 QYEVDLGNLLAFNHS------HHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTE 59
+ E DLGNLLA + + H P+ + L ++ Q + ++L+ LP+
Sbjct: 31 ELEFDLGNLLASDRNPPTGLRHAGPTQEAELRALARDN-------TQLLINQLWQLPTER 83
Query: 60 DVDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRR 119
+ + LP P+T+LPR K +P+P+P T+W+ FA+ KGI+ +KK +VWDE +G W+RR
Sbjct: 84 VEEALVARLPEPSTRLPREKPVPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGRWRRR 143
Query: 120 FGYDRVDDDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALP 179
+GY R DD +IE +P ED FAKR + KK+RVAK + NRL+NL +A K+ LP
Sbjct: 144 WGYQRARDDTKEWLIEVPGNADPMEDQFAKRIQAKKERVAKNELNRLRNLARAHKM-QLP 202
Query: 180 SHVQLAATALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKH 239
S A + TG Q +K ELG +A STAS G+F +++P EKAP+ GK
Sbjct: 203 S-----AAGMHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKK 251
Query: 240 RKFLPVV 246
RKF P+
Sbjct: 252 RKFQPLF 258
>sp|Q9CYH6|RRS1_MOUSE Ribosome biogenesis regulatory protein homolog OS=Mus musculus
GN=Rrs1 PE=2 SV=1
Length = 365
Score = 168 bits (426), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 164/282 (58%), Gaps = 28/282 (9%)
Query: 6 QYEVDLGNLLAFNHSHHFPSL-----PSSREELVKECLEEGTKLVQAIADRLFNLPSTED 60
+ E DLGNLLA + + P++ PS EL + + T+L + ++L+ LP+
Sbjct: 31 ELEFDLGNLLASDRNP--PTVLRQAGPSPEAEL-RALARDNTQL---LINQLWRLPTERV 84
Query: 61 VDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRF 120
+ + LP P T+LPR K LP+P+P T+W+ FA+ KGI+ +KK +VWDE +G W+RR+
Sbjct: 85 EEAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEASGQWRRRW 144
Query: 121 GYDRVDDDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPS 180
GY R DD +IE + +P ED FAKR + KK+RVAK + NRL+NL +A K+ +PS
Sbjct: 145 GYKRARDDTKEWLIEVPGSADPMEDQFAKRTQAKKERVAKNELNRLRNLARAHKM-QMPS 203
Query: 181 HVQLAATALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKHR 240
+ L TG Q +K ELG +A STAS G+F +++P EKAP+ GK R
Sbjct: 204 -----SAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKKR 252
Query: 241 KFLPVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVT 282
KF P+ G + EK+ ++L + SK L+V +A
Sbjct: 253 KFQPLF---GDFAAEKKNQLELLRVMNSKKPR--LDVTRATN 289
>sp|A1A5P2|RRS1_RAT Ribosome biogenesis regulatory protein homolog OS=Rattus norvegicus
GN=Rrs1 PE=2 SV=1
Length = 365
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 163/282 (57%), Gaps = 28/282 (9%)
Query: 6 QYEVDLGNLLAFNHSHHFPSL-----PSSREELVKECLEEGTKLVQAIADRLFNLPSTED 60
+ E DLGNLLA + + P++ PS EL + + T+L + ++L+ LP+
Sbjct: 31 ELEFDLGNLLASDRNP--PTVLRQAGPSPEAEL-RALARDNTQL---LVNQLWQLPTERV 84
Query: 61 VDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRF 120
+ + LP P T+LPR K LP+P+P T+W+ FA+ KGI+ +KK +VWDE +G W+RR+
Sbjct: 85 EEAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRRRW 144
Query: 121 GYDRVDDDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPS 180
GY R DD +IE + +P ED FAKR KK+RVAK + NRL+NL +A K+ +PS
Sbjct: 145 GYKRARDDTKEWLIEVPGSADPMEDQFAKRIRAKKERVAKNELNRLRNLARAHKM-QMPS 203
Query: 181 HVQLAATALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKHR 240
+ L TG Q +K ELG +A STAS G+F +++P EKAP+ GK R
Sbjct: 204 -----SAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKKR 252
Query: 241 KFLPVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVT 282
KF P+ G + EK+ ++L + SK L+V +A
Sbjct: 253 KFQPLF---GDFAAEKKNQLELLRVMNSKKPQ--LDVTRATN 289
>sp|Q15050|RRS1_HUMAN Ribosome biogenesis regulatory protein homolog OS=Homo sapiens
GN=RRS1 PE=1 SV=2
Length = 365
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/281 (40%), Positives = 164/281 (58%), Gaps = 26/281 (9%)
Query: 6 QYEVDLGNLLAFNH---SHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTEDVD 62
+ + DLGNLLA + + + P+ EL + + T+L + ++L+ LP TE V+
Sbjct: 31 ELQFDLGNLLASDRNPPTGLRCAGPTPEAEL-QALARDNTQL---LINQLWQLP-TERVE 85
Query: 63 GPIVT-LPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRFG 121
IV LP PTT+LPR K LP+P+P T+W+ FA+ KGI+ +KK +VWDE +G W+RR+G
Sbjct: 86 EAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRRRWG 145
Query: 122 YDRVDDDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPSH 181
Y R DD +IE +P ED FAKR + KK+RVAK + NRL+NL +A K+ LPS
Sbjct: 146 YQRARDDTKEWLIEVPGNADPLEDQFAKRIQAKKERVAKNELNRLRNLARAHKM-QLPS- 203
Query: 182 VQLAATALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKHRK 241
A L TG Q +K ELG +A STAS G+F +++P EK P+ GK RK
Sbjct: 204 ----AAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKVPRGSGKKRK 253
Query: 242 FLPVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVT 282
F P+ G + EK+ ++L + SK L+V +A
Sbjct: 254 FQPLF---GDFAAEKKNQLELLRVMNSKKPQ--LDVTRATN 289
>sp|Q9XVT0|RRS1_CAEEL Ribosome biogenesis regulatory protein homolog OS=Caenorhabditis
elegans GN=rrbs-1 PE=3 SV=1
Length = 333
Score = 142 bits (358), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 108/290 (37%), Positives = 155/290 (53%), Gaps = 26/290 (8%)
Query: 9 VDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTEDVDGPIVTL 68
+DLGNLL + P + E L E K Q + + ++ L + IVTL
Sbjct: 16 IDLGNLLFIDRE---PIQGDASEGLE----ERARKNTQLLFNNIWQLEQKRVEEAIIVTL 68
Query: 69 PPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRFGYDRVDDD 128
PP T +LPR K LP+ K PTKWE +A +KGI+KRKKDK V+DE T WK +GY R +DD
Sbjct: 69 PPATYRLPREKRLPEKKEPTKWEKYAAEKGIEKRKKDKKVFDEATKEWKPTYGYRRGNDD 128
Query: 129 RDVPIIEA-KMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPSHVQLAAT 187
+IE ++P +D FA+R+E+KK+RVAK D R++NL + K + V+ +
Sbjct: 129 TKDWLIEIPDNAEDPNKDFFAERREKKKERVAKNDMQRMKNLARQMK-----TTVKSGPS 183
Query: 188 ALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKHRKF----L 243
+ G K+ +K ++ A +TAS GKF + + GEKA GK RKF
Sbjct: 184 TEKMIGVGVDAKEKSKQQVRFAVDRAKLATASAGKFQEGLKGEKANVKTGKKRKFEANEA 243
Query: 244 PVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVTAYNVKREKKQR 293
PV S EKE+ ++L ++ SK + + EKA REKK++
Sbjct: 244 PV-------SGEKERALQILQRMKSKKAK--IVEEKAAAVAGPLREKKEK 284
>sp|A8WY26|RRS1_CAEBR Ribosome biogenesis regulatory protein homolog OS=Caenorhabditis
briggsae GN=rrbs-1 PE=3 SV=1
Length = 329
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/268 (36%), Positives = 147/268 (54%), Gaps = 24/268 (8%)
Query: 9 VDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTEDVDGPIVTL 68
+DLGNLL + L EE ++E + T+L + + ++ L + IVTL
Sbjct: 16 IDLGNLLFIDRE----PLQGDAEEGLEERARKNTQL---LFNNIWQLEQKRVEEAIIVTL 68
Query: 69 PPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRFGYDRVDDD 128
P T +LPR K LP+ K PTKWE +AK+KGI+KRKKDK V+DE T WK +GY R +D+
Sbjct: 69 PAATYRLPREKKLPEKKEPTKWEKYAKEKGIEKRKKDKKVFDEATKEWKPTYGYRRGNDN 128
Query: 129 RDVPIIEA-KMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPSHVQLAAT 187
+IE ++P +D FA+R+E+KK+RVAK + R++NL + K + V+ +
Sbjct: 129 TKDWLIEIPDNAEDPNKDFFAERREKKKERVAKNEMQRMKNLARQMK-----TTVKTGPS 183
Query: 188 ALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKHRKF----L 243
+ G K +K ++ A +TAS GKF + + GEKA GK RKF
Sbjct: 184 TDKMIGVGIDAKDKSKQDVRFAVDRAKLATASAGKFQEGLKGEKANIKTGKKRKFESNEA 243
Query: 244 PVVEGSGIGSREKEQTDKVLNKLFSKHS 271
PV S EKE+ ++L ++ SK +
Sbjct: 244 PV-------SAEKERALQILQRMKSKKA 264
>sp|Q869Q2|RRS1_DICDI Ribosome biogenesis regulatory protein homolog OS=Dictyostelium
discoideum GN=rrs1 PE=3 SV=1
Length = 317
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 162/297 (54%), Gaps = 26/297 (8%)
Query: 1 MESQNQYEVDLGNLLAFNHSH----HFPSLPSSREELVKECLEEGTKLVQAIADRLFNLP 56
++ ++ DLGNL AF+HS + S P+ E + + + VQ + RLF LP
Sbjct: 21 IDGEDTLLYDLGNLTAFDHSSLNKTEYKSNPN---EYINKLSRDN---VQLLISRLFQLP 74
Query: 57 STEDVDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTW 116
E +G + LP TT +PR + LP KP T+WE FA+ KGIKK+KK + WD++ +
Sbjct: 75 IKEIEEGSLALLPRCTTPIPRERSLPTSKPKTRWEAFAEIKGIKKKKKSSMEWDKEHEEY 134
Query: 117 KRRFGYDRVDDDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVG 176
+ FGY + +D + + A+ D+ GEDPF K ++EK RV+KQ K +N +A
Sbjct: 135 RPTFGYKKANDVANDWAMLARPDDKVGEDPFKKLEDEKNDRVSKQKKREQRNFDEA---- 190
Query: 177 ALPSHVQLAATALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEK-APKH 235
S Q++ ++ + + K ++ V +A STAS GKFDK+V EK APK
Sbjct: 191 ---SMRQMSNVGKTLSFDKEHRGQI-KSDMEKVFDVAKLSTASLGKFDKRVENEKDAPKR 246
Query: 236 QGKHRKFLPVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVTAYNVKREKKQ 292
K L G+G ++E E K+++++F K + +LNV+KA + VK E+++
Sbjct: 247 GKKKLAGL----GAGDVAQESENNSKLIDRMFKKEN--VLNVDKATRQF-VKAEERE 296
>sp|Q08746|RRS1_YEAST Regulator of ribosome biosynthesis OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRS1 PE=1 SV=1
Length = 203
Score = 91.3 bits (225), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 100/184 (54%), Gaps = 24/184 (13%)
Query: 10 DLGNLLAFNHS----HHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLP---STEDVD 62
DLGNL AF+ + + S + REE +K + VQ + ++L +LP +TE V
Sbjct: 22 DLGNLAAFDSNVLDKNDLDSSNARREEKIKSLTRDN---VQLLINQLLSLPMKTTTESVG 78
Query: 63 GP--------IVTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIK-KRKKDKVVWDEQT 113
G ++ LP PTT LPR K LPK K TKWE FA KKGIK K + K+++DE +
Sbjct: 79 GTGGQSSVMTLLQLPDPTTDLPREKPLPKAKAMTKWEKFAAKKGIKPKERAGKMIYDEAS 138
Query: 114 GTWKRRFGY----DRVDDDRDVPIIE-AKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQN 168
G W ++GY ++DD V + + K TD DP + E+K+ V K +K + +N
Sbjct: 139 GEWVPKWGYKGANKKLDDQWLVEVDDKVKGTDNELIDPRTLNRAERKRLVKKNEKQQRRN 198
Query: 169 LKQA 172
+K A
Sbjct: 199 MKNA 202
>sp|O59678|RRS1_SCHPO Ribosome biogenesis regulatory protein homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A3.16 PE=1 SV=1
Length = 166
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 1 MESQNQYEVDLGNLLAFNHSHHFPS-LPSSREELVKECLEEGTKLVQAIADRLFNLPSTE 59
+E+ + DLGN+ AF+ S + L S +E L VQ + +++ +LP
Sbjct: 5 IENSIPLDFDLGNMAAFDISPLDETKLSGSEKESFLFSLSRDN--VQQLVNKMISLPKER 62
Query: 60 DVDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKD-KVVWDEQTGTWKR 118
DG ++ LP T LPR+K LPKPKP TKW+ FA+ KGI +K++ ++V+DE +G W
Sbjct: 63 TSDGVLLQLPETVTPLPRAKPLPKPKPETKWQRFARIKGIAPKKREGRLVFDEASGEWVP 122
Query: 119 RFGY 122
++GY
Sbjct: 123 KWGY 126
>sp|P52179|MYOM1_HUMAN Myomesin-1 OS=Homo sapiens GN=MYOM1 PE=1 SV=2
Length = 1685
Score = 32.3 bits (72), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 8 EVDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRL 52
E +L LLA +H H FP++P + EL E LE+G A++L
Sbjct: 1226 EEELKRLLALSHEHKFPTVP-VKSELAVEILEKGQVRFWMQAEKL 1269
>sp|Q4UNB8|Y089_RICFE Uncharacterized protein RF_0089 OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=RF_0089 PE=3 SV=1
Length = 1138
Score = 32.0 bits (71), Expect = 6.6, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
Query: 218 ASGGKFDKKVPGEKAPKHQGKHRKFLPVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNV 277
ASGG + GE+ + + K + SG+ + +E+ + V NK F K + E+
Sbjct: 956 ASGGGRIRDQQGEETSERRTNAEKKWNELVDSGVVTEIRERDNSVTNK-FDKLADELNKS 1014
Query: 278 EKAVTAYNVKREKKQRLKHNKNVEDKSLSTSNKLKPKKQLNKKSAKKG 325
EKA +++ NKN+E+ + P+++++ S G
Sbjct: 1015 EKA------------KVEENKNIENDRKENNTTTSPQEKVDSTSRGSG 1050
>sp|G3V8T1|MPP8_RAT M-phase phosphoprotein 8 OS=Rattus norvegicus GN=Mphosph8 PE=2 SV=1
Length = 851
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 253 SREKEQTDKVLNKLFSKHSHEILNVEKAVTAYNVKREKKQRLKHNKNVEDKSLSTSN--- 309
+++K D V +F KH +++++E+A T V+R+KKQ K + E K L +N
Sbjct: 290 AKDKTGQDTVQESIFEKHLDDLISIEEAGT--RVRRKKKQPRKFEEPKEIKKLENTNNFL 347
Query: 310 --KLKPKKQLNK 319
K+ PKKQ N+
Sbjct: 348 ERKMIPKKQRNQ 359
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.128 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,253,504
Number of Sequences: 539616
Number of extensions: 6080465
Number of successful extensions: 23803
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 184
Number of HSP's that attempted gapping in prelim test: 23143
Number of HSP's gapped (non-prelim): 726
length of query: 333
length of database: 191,569,459
effective HSP length: 118
effective length of query: 215
effective length of database: 127,894,771
effective search space: 27497375765
effective search space used: 27497375765
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)