Query 019971
Match_columns 333
No_of_seqs 162 out of 239
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 05:59:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04939 RRS1: Ribosome biogen 100.0 3.9E-68 8.5E-73 471.2 15.3 162 5-169 1-163 (164)
2 KOG1765 Regulator of ribosome 100.0 1.8E-64 3.9E-69 446.2 14.9 171 1-174 5-180 (181)
3 COG5225 RRS1 Uncharacterized p 100.0 1.7E-46 3.8E-51 325.8 8.0 162 2-172 6-171 (172)
4 KOG4538 Predicted coiled-coil 27.8 82 0.0018 27.6 3.7 34 143-176 67-100 (130)
5 PF05361 PP1_inhibitor: PKC-ac 21.0 64 0.0014 29.1 1.9 43 4-53 69-111 (144)
6 PF15232 DUF4585: Domain of un 18.8 50 0.0011 26.8 0.6 14 104-117 29-42 (75)
7 PF06324 Pigment_DH: Pigment-d 17.5 79 0.0017 19.2 1.1 14 47-60 3-16 (18)
8 KOG3120 Predicted haloacid deh 16.7 1.7E+02 0.0038 28.6 3.8 46 14-71 105-150 (256)
9 KOG4617 Uncharacterized conser 12.7 1.5E+02 0.0032 28.7 2.1 41 7-56 48-88 (249)
10 cd01207 Ena-Vasp Enabled-VASP- 11.6 1E+02 0.0023 26.4 0.8 16 106-121 11-26 (111)
No 1
>PF04939 RRS1: Ribosome biogenesis regulatory protein (RRS1); InterPro: IPR007023 This is a family of eukaryotic ribosomal biogenesis regulatory proteins.; GO: 0042254 ribosome biogenesis, 0005634 nucleus
Probab=100.00 E-value=3.9e-68 Score=471.24 Aligned_cols=162 Identities=56% Similarity=0.927 Sum_probs=156.1
Q ss_pred CCccccccceecccCCCCCCCCCCChHHHHHHHHHhchhhHHHHHHHHhcCCccccCCCceEecCCCCCCCCCCCCCCCC
Q 019971 5 NQYEVDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTEDVDGPIVTLPPPTTKLPRSKHLPKP 84 (333)
Q Consensus 5 ~~le~DLGnLla~D~n~~~~~~~~~~e~~l~~~~rd~~~n~QlLiN~l~~LP~~~~~dg~~a~LP~p~t~LPReKplPkp 84 (333)
|||+||||||||||+|||+....++.|+||.++|||| ||+|||+||+||++++++|+||.||+|+|.||||||||+|
T Consensus 1 t~~~~Dlg~Lla~D~~p~d~~~~~~~e~~L~~~ardn---~Q~Lin~l~~Lp~~~~~~g~~~~LP~p~t~LPReKplPk~ 77 (164)
T PF04939_consen 1 TPLEFDLGNLLAFDPNPLDPSSSSDREEYLKSLARDN---TQLLINQLFELPTERTEDGVLAKLPEPTTRLPREKPLPKP 77 (164)
T ss_pred CCceeeccceeeecCCcccccccCCcHHHHHHHHHHH---HHHHHHHHHhCCceecCCCeEEECCCCCccCcccCCCCCC
Confidence 6899999999999999997655568999999999988 7999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHhCCccccCCCceeecccCcccccccccCCC-CCCCcceeeccCCCCCCCChhHHHHHHHHHHHHHHHH
Q 019971 85 KPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRFGYDRVD-DDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDK 163 (333)
Q Consensus 85 Kp~TkWE~FA~~KGI~kkKk~k~v~DE~~~eWvprwGyk~~n-~~~~~wiiEvk~~~d~~eDpf~k~~~ekkerv~Kne~ 163 (333)
+|+||||+||+.|||+|+||++|||||++++|||||||+++| +.+++|||||++++++++|||+++++||+|||+|||+
T Consensus 78 K~~TkWE~FA~~KGI~K~Kk~~lv~DE~~~eW~prwGyk~~nkd~~~~wiiEv~~~~~~~eDpf~~~~~eKkerv~Kne~ 157 (164)
T PF04939_consen 78 KPPTKWEKFAKKKGIKKRKKSKLVYDEETGEWVPRWGYKRANKDKEKDWIIEVKPNDDPGEDPFEKKREEKKERVAKNEK 157 (164)
T ss_pred CCCChHHHHHHHcCCccccCcCccccccccchhhcccccccccccccCceEEcCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 5678999999999999999999999999999999999
Q ss_pred HHHHHH
Q 019971 164 NRLQNL 169 (333)
Q Consensus 164 ~~lrN~ 169 (333)
|||+|+
T Consensus 158 ~~lrN~ 163 (164)
T PF04939_consen 158 QRLRNI 163 (164)
T ss_pred HHHhcC
Confidence 999997
No 2
>KOG1765 consensus Regulator of ribosome synthesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-64 Score=446.17 Aligned_cols=171 Identities=49% Similarity=0.799 Sum_probs=161.3
Q ss_pred CCCCCCccccccceecccCCCCCCC-CCCC---hHHHHHHHHHhchhhHHHHHHHHhcCCccccCCCceEecCCCCCCCC
Q 019971 1 MESQNQYEVDLGNLLAFNHSHHFPS-LPSS---REELVKECLEEGTKLVQAIADRLFNLPSTEDVDGPIVTLPPPTTKLP 76 (333)
Q Consensus 1 ~~~~~~le~DLGnLla~D~n~~~~~-~~~~---~e~~l~~~~rd~~~n~QlLiN~l~~LP~~~~~dg~~a~LP~p~t~LP 76 (333)
|+++.+|+||||||+|||+||++.. ..++ ++..|.+++||+ ||+|||+||+||++++++|+|++||+|||.||
T Consensus 5 vek~i~~~~DlGNllafd~n~l~~~~~~ss~a~~~~~l~~~~rdn---vQ~lvN~l~~lp~~rt~e~vv~qLPe~Tt~LP 81 (181)
T KOG1765|consen 5 VEKEIPLQFDLGNLLAFDRNPLDLLTLVSSGAEREKELNSLTRDN---VQLLVNKLWSLPSKRTEEGVVVQLPEPTTRLP 81 (181)
T ss_pred ccccccceeecchhhhccCCcCccccccCCchhhhHHHHHHHHHH---HHHHHHHHHhCcccccccceeEeCCCccccCc
Confidence 6899999999999999999998654 3344 677777777765 89999999999999999999999999999999
Q ss_pred CCCCCCCCCCCChHHHHHHHhCCccccCCCceeecccCcccccccccCCCCCCC-cceeeccCCCCCCCChhHHHHHHHH
Q 019971 77 RSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRFGYDRVDDDRD-VPIIEAKMTDEPGEDPFAKRQEEKK 155 (333)
Q Consensus 77 ReKplPkpKp~TkWE~FA~~KGI~kkKk~k~v~DE~~~eWvprwGyk~~n~~~~-~wiiEvk~~~d~~eDpf~k~~~ekk 155 (333)
||||||+|+|+|+||+||..|||.+|||+++||||++|||+|||||+|+||+.+ +||||+++++++++|||+.++++++
T Consensus 82 ReK~lPr~k~~TkWe~FAr~KGI~krKk~~lV~DEasgew~pr~GY~~~ndd~~~~wLvEi~dk~~~~~D~fa~~r~~kK 161 (181)
T KOG1765|consen 82 REKPLPRPKPETKWERFARKKGIEKRKKEKLVYDEASGEWKPRWGYKRKNDDLDKQWLVEIPDKEKTLVDPFALRRRQKK 161 (181)
T ss_pred cccCCCCCCCccHHHHHHHHcCcchhhccCcceeccccccccccCccccccchhhhhhhccCCcccccccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999976 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 019971 156 KRVAKQDKNRLQNLKQAAK 174 (333)
Q Consensus 156 erv~Kne~~~lrN~~ra~k 174 (333)
+||+|||+|||+||+||.+
T Consensus 162 ~rv~Kne~nRl~Nl~ra~k 180 (181)
T KOG1765|consen 162 NRVKKNEKNRLRNLKRARK 180 (181)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999976
No 3
>COG5225 RRS1 Uncharacterized protein involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-46 Score=325.83 Aligned_cols=162 Identities=32% Similarity=0.513 Sum_probs=144.2
Q ss_pred CCCCCccccccceecccCCCCCCC--CCCChHHHHHHHHHhchhhHHHHHHHHhcCCccccCCCceEecCCCCCCCCCCC
Q 019971 2 ESQNQYEVDLGNLLAFNHSHHFPS--LPSSREELVKECLEEGTKLVQAIADRLFNLPSTEDVDGPIVTLPPPTTKLPRSK 79 (333)
Q Consensus 2 ~~~~~le~DLGnLla~D~n~~~~~--~~~~~e~~l~~~~rd~~~n~QlLiN~l~~LP~~~~~dg~~a~LP~p~t~LPReK 79 (333)
+...|+.|||||+.|||.|+++.. ..|..|+.+.++.||+ ||.|+|+|+.||..++.|++|.+||++||.|||||
T Consensus 6 e~~ip~v~dlGn~aafD~n~ld~~~l~~s~~es~i~sL~rdn---VQ~l~nql~slp~~rtsd~VllqLPe~tt~lPR~k 82 (172)
T COG5225 6 ELKIPTVVDLGNVAAFDLNVLDKNDLDSSQEESNIKSLKRDN---VQELKNQLCSLPARRTSDLVLLQLPESTTALPREK 82 (172)
T ss_pred ccCcceEeeccchhhcccccccccccchhhhhHHHHhhhHHH---HHHHHHHHhcCchhcccceeEEeCCCccccCcccc
Confidence 456789999999999999999643 2234667888888876 99999999999999999999999999999999999
Q ss_pred CCCCCCCCChHHHHHHHhCCccccCC-CceeecccCcccccccccCCCCC-CCcceeeccCCCCCCCChhHHHHHHHHHH
Q 019971 80 HLPKPKPPTKWELFAKKKGIKKRKKD-KVVWDEQTGTWKRRFGYDRVDDD-RDVPIIEAKMTDEPGEDPFAKRQEEKKKR 157 (333)
Q Consensus 80 plPkpKp~TkWE~FA~~KGI~kkKk~-k~v~DE~~~eWvprwGyk~~n~~-~~~wiiEvk~~~d~~eDpf~k~~~ekker 157 (333)
|+|++++.|+||.||+.|||.+++|+ .|||||++|||||+|||+++|+. .++||+|+.... -+..+++++..
T Consensus 83 plpk~k~eTkWerFAr~KGI~pkkr~g~lvyDEasGEwvPkwGykgknk~l~~qwlve~~~k~------k~l~r~qrkn~ 156 (172)
T COG5225 83 PLPKEKIETKWERFARTKGIEPKKRSGPLVYDEASGEWVPKWGYKGKNKRLLKQWLVEGEVKL------KTLLRRQRKNN 156 (172)
T ss_pred cccccchHHHHHHHHHhcCCCccccCCCceeeccccccccccCccccchHHHHHHHHhhhHHH------HHHHHHHHHHH
Confidence 99999999999999999999999997 99999999999999999999986 679999973221 14678889999
Q ss_pred HHHHHHHHHHHHHHH
Q 019971 158 VAKQDKNRLQNLKQA 172 (333)
Q Consensus 158 v~Kne~~~lrN~~ra 172 (333)
+.|||.+|++||.++
T Consensus 157 ikKne~~rr~n~~~~ 171 (172)
T COG5225 157 IKKNEANRRGNISRR 171 (172)
T ss_pred HHHHHHHHhcchhhc
Confidence 999999999999875
No 4
>KOG4538 consensus Predicted coiled-coil protein [General function prediction only]
Probab=27.82 E-value=82 Score=27.62 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=27.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 019971 143 GEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVG 176 (333)
Q Consensus 143 ~eDpf~k~~~ekkerv~Kne~~~lrN~~ra~k~~ 176 (333)
-+|-....++++++|...|+.+||.|..+|.=++
T Consensus 67 i~ek~~~~rqeKkqRrvEn~kRRLeNERkaEvVQ 100 (130)
T KOG4538|consen 67 IREKQVQERQEKKQRRVENEKRRLENERKAEVVQ 100 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3455566789999999999999999999987543
No 5
>PF05361 PP1_inhibitor: PKC-activated protein phosphatase-1 inhibitor; InterPro: IPR008025 Contractility of vascular smooth muscle depends on phosphorylation of myosin light chains, and is modulated by hormonal control of myosin phosphatase activity. Signaling pathways activate kinases such as PKC or Rho-dependent kinases that phosphorylate the myosin phosphatase inhibitor protein called CPI-17. Phosphorylation of CPI-17 at Thr-38 enhances its inhibitory potency 1000-fold, creating a molecular switch for regulating contraction [].; GO: 0042325 regulation of phosphorylation, 0005737 cytoplasm; PDB: 2RLT_A 1J2M_A 1K5O_A 1J2N_A.
Probab=21.01 E-value=64 Score=29.06 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=29.0
Q ss_pred CCCccccccceecccCCCCCCCCCCChHHHHHHHHHhchhhHHHHHHHHh
Q 019971 4 QNQYEVDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLF 53 (333)
Q Consensus 4 ~~~le~DLGnLla~D~n~~~~~~~~~~e~~l~~~~rd~~~n~QlLiN~l~ 53 (333)
+.|.++||..||=.+... .+..+|.+++.+....+..+|+.|+
T Consensus 69 ~~p~EIDIDeLLDl~sde-------eR~~~LqelL~~C~~ptE~FI~ELL 111 (144)
T PF05361_consen 69 EMPEEIDIDELLDLESDE-------ERRRKLQELLQDCPKPTEDFIQELL 111 (144)
T ss_dssp TS-SSSHHHHHHCTSSTT-------HHHHHHHHHHTTCSSTTHHHHHHHH
T ss_pred CCCCcccHHHHhcCCchH-------HHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 445589999888665543 2456788888876666666777666
No 6
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=18.80 E-value=50 Score=26.77 Aligned_cols=14 Identities=36% Similarity=0.695 Sum_probs=11.8
Q ss_pred CCCceeecccCccc
Q 019971 104 KDKVVWDEQTGTWK 117 (333)
Q Consensus 104 k~k~v~DE~~~eWv 117 (333)
+.++.||.+||.||
T Consensus 29 ~~k~lfDPETGqYV 42 (75)
T PF15232_consen 29 KTKTLFDPETGQYV 42 (75)
T ss_pred ceeeeecCCCCcEE
Confidence 45689999999985
No 7
>PF06324 Pigment_DH: Pigment-dispersing hormone (PDH); InterPro: IPR009396 This family consists of several eukaryotic pigment-dispersing hormone (PDH) proteins. The pigment-dispersing hormone (PDH) is produced in the eyestalks of Crustacea where it induces light-adapting movements of pigment in the compound eye and regulates the pigment dispersion in the chromatophores [].; GO: 0005179 hormone activity, 0009416 response to light stimulus, 0005576 extracellular region
Probab=17.54 E-value=79 Score=19.21 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=11.1
Q ss_pred HHHHHHhcCCcccc
Q 019971 47 AIADRLFNLPSTED 60 (333)
Q Consensus 47 lLiN~l~~LP~~~~ 60 (333)
-|||.|+.||.-..
T Consensus 3 elINslLglpk~m~ 16 (18)
T PF06324_consen 3 ELINSLLGLPKVMN 16 (18)
T ss_pred HHHHHHHcchhhcc
Confidence 48999999997543
No 8
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=16.74 E-value=1.7e+02 Score=28.57 Aligned_cols=46 Identities=17% Similarity=0.395 Sum_probs=35.5
Q ss_pred eecccCCCCCCCCCCChHHHHHHHHHhchhhHHHHHHHHhcCCccccCCCceEecCCC
Q 019971 14 LLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTEDVDGPIVTLPPP 71 (333)
Q Consensus 14 Lla~D~n~~~~~~~~~~e~~l~~~~rd~~~n~QlLiN~l~~LP~~~~~dg~~a~LP~p 71 (333)
.++.|.|.++ .|+.|++.. .--|+..||+=|..-++.|.|..+|=-
T Consensus 105 iIVSDaNsfF------Ie~~Lea~~------~~d~F~~IfTNPa~~da~G~L~v~pyH 150 (256)
T KOG3120|consen 105 IIVSDANSFF------IEEILEAAG------IHDLFSEIFTNPACVDASGRLLVRPYH 150 (256)
T ss_pred EEEecCchhH------HHHHHHHcc------HHHHHHHHhcCCcccCCCCcEEeecCC
Confidence 5678888763 455555422 567999999999999999999999864
No 9
>KOG4617 consensus Uncharacterized conserved protein [Function unknown]
Probab=12.70 E-value=1.5e+02 Score=28.73 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=28.2
Q ss_pred ccccccceecccCCCCCCCCCCChHHHHHHHHHhchhhHHHHHHHHhcCC
Q 019971 7 YEVDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLP 56 (333)
Q Consensus 7 le~DLGnLla~D~n~~~~~~~~~~e~~l~~~~rd~~~n~QlLiN~l~~LP 56 (333)
+.-|+|||.+.|-.. .- |+....-..++..|.|...||+--
T Consensus 48 ~t~~~~n~~a~~ncs--------~~-y~n~~~~~~~~~t~~i~t~lw~ka 88 (249)
T KOG4617|consen 48 LTNDYGNLIANANCS--------KR-YLNSDRINIVATTQGILTSLWQKA 88 (249)
T ss_pred hhhhhhceeeccchh--------HH-hhhhHHHHHHHHHHHHHHHHHHHc
Confidence 566999999988742 11 555444445556799999999643
No 10
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=11.62 E-value=1e+02 Score=26.41 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=13.7
Q ss_pred CceeecccCccccccc
Q 019971 106 KVVWDEQTGTWKRRFG 121 (333)
Q Consensus 106 k~v~DE~~~eWvprwG 121 (333)
=|+||+.++.|+|-=|
T Consensus 11 Vm~~d~~tk~W~P~~~ 26 (111)
T cd01207 11 VMVYDDSNKKWVPAGG 26 (111)
T ss_pred eeEEcCCCCcEEcCCC
Confidence 4899999999999644
Done!