BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019972
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 224 bits (571), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 185/313 (59%), Gaps = 15/313 (4%)
Query: 27 AASPCCASLSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASV 86
A P LSF+FY +CP AE +V V+ A D + LLRL FHDCFV+GCDASV
Sbjct: 1 AEPPVAPGLSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASV 60
Query: 87 LLQGNGT---ERSDPANASL--GGFEVIDSAKRVLEIFCPG-TVSCADIIALAARDSVEI 140
LL G+ T E+ P N +L F+ ++ + LE C G VSC+DI+ALAARDSV +
Sbjct: 61 LLDGSATGPGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVV 120
Query: 141 AGGPAIQIPTGRRDGRASAA-ENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAHT 199
+GGP ++P GRRD R+ A+ ++V +++ + + ++ GL DLVT+SG HT
Sbjct: 121 SGGPDYRVPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHT 180
Query: 200 IGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVF 259
IG AHC++F DR P D ++ ++ + L R CPA + TV D T VF
Sbjct: 181 IGLAHCSSFEDRLFPRP-------DPTISPTFLSRLKRTCPAKGTDRRTVL-DVRTPNVF 232
Query: 260 DNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGVKTE 319
DN+YY +L+ +GLF SD L + TR VE FA Q+ FF +G+S K+ + V+T
Sbjct: 233 DNKYYIDLVNREGLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTS 292
Query: 320 DEGEIRQTCSMTN 332
D+GE+R+ CS+ N
Sbjct: 293 DQGEVRRNCSVRN 305
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 223 bits (569), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 131/304 (43%), Positives = 176/304 (57%), Gaps = 8/304 (2%)
Query: 35 LSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQ--GNG 92
L FY SCP+AE +V V +A + + I L+R+ FHDCFV GCDASVLL N
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 93 TERSD--PANASLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPT 150
T D P N SL GFEVI +AK +E CP TVSCADI+A AARDS +AG Q+P+
Sbjct: 62 TAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPS 121
Query: 151 GRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAHTIGSAHCNAFND 210
GRRDG S A A I F ++I +F++K L+ D++VTLSGAH+IG AHC++F +
Sbjct: 122 GRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTN 181
Query: 211 RFREDPKGKLTLIDTSLDSSYANELMRKCPANAS--SSVTVNNDPETSFVFDNQYYRNLL 268
R G + ID +L SYA L CPAN++ + +TV+ D T V DN YY +
Sbjct: 182 RLYNFNSG--SGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQ 239
Query: 269 AHKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQTC 328
GL SD L+ + V+ A + ++ S + + +K+ I V T +GEIR C
Sbjct: 240 LTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNC 299
Query: 329 SMTN 332
S+ N
Sbjct: 300 SVVN 303
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 214 bits (546), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 121/302 (40%), Positives = 170/302 (56%), Gaps = 13/302 (4%)
Query: 35 LSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGN--- 91
LS NFYA CP+A + + V SA + + + LLRL FHDCFV+GCDASVLL
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 92 -GTERSDPANASLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPT 150
G + + P S+ GFEVID+ K +E CPG VSCADI+A+AARDSV GG + +
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 151 GRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAHTIGSAHCNAFND 210
GRRD ++ + +++ F ++ +I AFS+KG + +LVTLSGAHTIG A C AF
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRT 181
Query: 211 RFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLAH 270
R ++++D +YA L CP+ + D T FDN YY NL
Sbjct: 182 RIYN---------ESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNK 232
Query: 271 KGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQTCSM 330
KGL SD L + T QV ++N+ +F +++G + +K+ ++ T G+IR C
Sbjct: 233 KGLLHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRK 292
Query: 331 TN 332
TN
Sbjct: 293 TN 294
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 205 bits (522), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 170/306 (55%), Gaps = 10/306 (3%)
Query: 35 LSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNGTE 94
L+ FY+ +CP+A +V +T++ A D I L+RL FHDCFV GCDAS+LL G+
Sbjct: 3 LNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSI 62
Query: 95 RSD----PANASLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPT 150
+S+ P S GF V+D+ K LE CPG VSC+D++ALA+ SV +AGGP+ +
Sbjct: 63 QSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLL 122
Query: 151 GRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAHTIGSAHCNAFND 210
GRRD + ++I +++ + FS+ GL+ +DLV LSGAHT G A C FN+
Sbjct: 123 GRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFNN 182
Query: 211 R-FREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
R F G D +L+S+ + L + CP N S+S N D T FDN Y+ NL +
Sbjct: 183 RLFNFSGTGN---PDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQS 239
Query: 270 HKGLFQSDSVLLHD--ERTRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQT 327
+ GL QSD L T V +FA++Q FF + S + + +I T GEIR
Sbjct: 240 NDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLD 299
Query: 328 CSMTNG 333
C NG
Sbjct: 300 CKKVNG 305
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/308 (39%), Positives = 164/308 (53%), Gaps = 10/308 (3%)
Query: 33 ASLSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNG 92
SL+ FYA +CP+A MV V+ A D I L+RL FHDCFV GCDAS+LL +G
Sbjct: 2 GSLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSG 61
Query: 93 T----ERSDPANASLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQI 148
+ + + P S GF V+D+ K LE CPG VSC D++ALA++ SV ++GGP+ +
Sbjct: 62 SIISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTV 121
Query: 149 PTGRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAHTIGSAHCNAF 208
GRRD + ++I T ++ + FS+ GL+ +DLV LSGAHT G A C F
Sbjct: 122 DLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVF 181
Query: 209 NDR-FREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNL 267
++R F KG + S EL CP S + N D T FDN Y+ NL
Sbjct: 182 SNRLFNFSGKGNPDPTLNTTLLSTLQEL---CPQKGRGSGSTNLDLSTPDAFDNNYFTNL 238
Query: 268 LAHKGLFQSDSVLLH--DERTRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIR 325
++ GL QSD L T V +FA++Q FF + S + + +I T GEIR
Sbjct: 239 QSNNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIR 298
Query: 326 QTCSMTNG 333
C TNG
Sbjct: 299 LDCKKTNG 306
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/304 (38%), Positives = 171/304 (56%), Gaps = 12/304 (3%)
Query: 35 LSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNGTE 94
LS + YA SCP+ +V V A + + L+RL FHDCFV GCDAS+LL G +E
Sbjct: 2 LSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGADSE 61
Query: 95 R-SDPANASLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGRR 153
+ + P S GFEVID+ K +E CPG VSCADI+ LAARDSV ++GGP ++ GR+
Sbjct: 62 KLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVALGRK 121
Query: 154 DGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAHTIGSAHCNAFNDR-F 212
DG A +N N+ ++ +I F + L++ D+V LSGAHT G A C F++R F
Sbjct: 122 DGLV-ANQNSANNLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSNRLF 180
Query: 213 REDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLAHKG 272
G D +L++S + L CP +S++T D T+ FDN Y++NLL KG
Sbjct: 181 NFTGAGN---PDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLEGKG 237
Query: 273 LFQSDSVLLHDE----RTRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQTC 328
L SD +L + T+K VE ++ Q FF ++ + +++ +I GE+R C
Sbjct: 238 LLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNI--SNGASGEVRTNC 295
Query: 329 SMTN 332
+ N
Sbjct: 296 RVIN 299
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 166/306 (54%), Gaps = 10/306 (3%)
Query: 35 LSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNG-- 92
L+ FY SCP+ +V +T+ + D I +LRL FHDCFV GCDAS+LL
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 93 -TERSDPANA-SLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPT 150
TE+ NA S GF VID K +E CP TVSCAD++ +AA+ SV +AGGP+ ++P
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 151 GRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSM-DDLVTLSGAHTIGSAHCNAFN 209
GRRD + + AN+ FT+ ++ +F + GL+ DLV LSG HT G C +
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSIM 182
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
DR L D +L+++Y L CP N + S V+ D T +FDN+YY NL
Sbjct: 183 DRLYN--FSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 240
Query: 270 HKGLFQSDSVLLHDER---TRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQ 326
KGL QSD L T V +FAN ++FF+ + + ++ +I T +G+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 327 TCSMTN 332
C + N
Sbjct: 301 NCRVVN 306
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 191 bits (486), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 165/306 (53%), Gaps = 10/306 (3%)
Query: 35 LSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNG-- 92
L+ FY SCP+ +V +T+ + D I +LRL FHDCFV GCDAS+LL
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 93 -TERSDPANA-SLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPT 150
TE+ NA S GF VID K +E CP TVSCAD++ +AA+ SV +AGGP+ ++P
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 151 GRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSM-DDLVTLSGAHTIGSAHCNAFN 209
GRRD + + AN+ FT+ ++ +F + GL+ DLV LSG HT G C
Sbjct: 123 GRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
DR L D +L+++Y L CP N + S V+ D T +FDN+YY NL
Sbjct: 183 DRLYN--FSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 240
Query: 270 HKGLFQSDSVLLHDER---TRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQ 326
KGL QSD L T V +FAN ++FF+ + + ++ +I T +G+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 327 TCSMTN 332
C + N
Sbjct: 301 NCRVVN 306
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 191 bits (485), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 165/306 (53%), Gaps = 10/306 (3%)
Query: 35 LSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNG-- 92
L+ FY SCP+ +V +T+ + D I +LRL FHDCFV GCDAS+LL
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 93 -TERSDPANA-SLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPT 150
TE+ NA S GF VID K +E CP TVSCAD++ +AA+ SV +AGGP+ ++P
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 151 GRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSM-DDLVTLSGAHTIGSAHCNAFN 209
GRRD + + AN+ FT+ ++ +F + GL+ DLV LSG HT G C
Sbjct: 123 GRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
DR L D +L+++Y L CP N + S V+ D T +FDN+YY NL
Sbjct: 183 DRLYN--FSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 240
Query: 270 HKGLFQSDSVLLHDER---TRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQ 326
KGL QSD L T V +FAN ++FF+ + + ++ +I T +G+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 327 TCSMTN 332
C + N
Sbjct: 301 NCRVVN 306
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 191 bits (485), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 165/306 (53%), Gaps = 10/306 (3%)
Query: 35 LSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNG-- 92
L+ FY SCP+ +V +T+ + D I +LRL FHDCFV GCDAS+LL
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 93 -TERSDPANA-SLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPT 150
TE+ NA S GF VID K +E CP TVSCAD++ +AA+ SV +AGGP+ ++P
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 151 GRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSM-DDLVTLSGAHTIGSAHCNAFN 209
GRRD + + AN+ FT+ ++ +F + GL+ DLV LSG HT G C
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
DR L D +L+++Y L CP N + S V+ D T +FDN+YY NL
Sbjct: 183 DRLYN--FSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNLEE 240
Query: 270 HKGLFQSDSVLLHDER---TRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQ 326
KGL QSD L T V +FAN ++FF+ + + ++ +I T +G+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 327 TCSMTN 332
C + N
Sbjct: 301 NCRVVN 306
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 191 bits (484), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 165/306 (53%), Gaps = 10/306 (3%)
Query: 35 LSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNG-- 92
L+ FY SCP+ +V +T+ + D I +LRL FHDCFV GCDAS+LL
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 93 -TERSDPANA-SLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPT 150
TE+ NA S GF VID K +E CP TVSCAD++ +AA+ SV +AGGP+ ++P
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 151 GRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSM-DDLVTLSGAHTIGSAHCNAFN 209
GRRD + + AN+ FT+ ++ +F + GL+ DLV LSG HT G C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
DR L D +L+++Y L CP N + S V+ D T +FDN+YY NL
Sbjct: 182 DRLYN--FSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 270 HKGLFQSDSVLLHDER---TRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQ 326
KGL QSD L T V +FAN ++FF+ + + ++ +I T +G+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 327 TCSMTN 332
C + N
Sbjct: 300 NCRVVN 305
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 191 bits (484), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 165/306 (53%), Gaps = 10/306 (3%)
Query: 35 LSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNG-- 92
L+ FY SCP+ +V +T+ + D I +LRL FHDCFV GCDAS+LL
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 93 -TERSDPANA-SLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPT 150
TE+ NA S GF VID K +E CP TVSCAD++ +AA+ SV +AGGP+ ++P
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 151 GRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSM-DDLVTLSGAHTIGSAHCNAFN 209
GRRD + + AN+ FT+ ++ +F + GL+ DLV LSG HT G C
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
DR L D +L+++Y L CP N + S V+ D T +FDN+YY NL
Sbjct: 183 DRLYN--FSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 240
Query: 270 HKGLFQSDSVLLHDER---TRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQ 326
KGL QSD L T V +FAN ++FF+ + + ++ +I T +G+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 327 TCSMTN 332
C + N
Sbjct: 301 NCRVVN 306
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 191 bits (484), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 165/306 (53%), Gaps = 10/306 (3%)
Query: 35 LSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNG-- 92
L+ FY SCP+ +V +T+ + D I +LRL FHDCFV GCDAS+LL
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 93 -TERSDPANA-SLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPT 150
TE+ NA S GF VID K +E CP TVSCAD++ +AA+ SV +AGGP+ ++P
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 151 GRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSM-DDLVTLSGAHTIGSAHCNAFN 209
GRRD + + AN+ FT+ ++ +F + GL+ DLV LSG HT G C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
DR L D +L+++Y L CP N + S V+ D T +FDN+YY NL
Sbjct: 182 DRLYN--FSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 270 HKGLFQSDSVLLHDER---TRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQ 326
KGL QSD L T V +FAN ++FF+ + + ++ +I T +G+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 327 TCSMTN 332
C + N
Sbjct: 300 NCRVVN 305
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 190 bits (483), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 165/306 (53%), Gaps = 10/306 (3%)
Query: 35 LSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNG-- 92
L+ FY SCP+ +V +T+ + D I +LRL FHDCFV GCDAS+LL
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 93 -TERSDPANA-SLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPT 150
TE+ NA S GF VID K +E CP TVSCAD++ +AA+ SV +AGGP+ ++P
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 151 GRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSM-DDLVTLSGAHTIGSAHCNAFN 209
GRRD + + AN+ FT+ ++ +F + GL+ DLV LSG HT G C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
DR L D +L+++Y L CP N + S V+ D T +FDN+YY NL
Sbjct: 182 DRLYN--FSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 270 HKGLFQSDSVLLHDER---TRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQ 326
KGL QSD L T V +FAN ++FF+ + + ++ +I T +G+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 327 TCSMTN 332
C + N
Sbjct: 300 NCRVVN 305
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 170/310 (54%), Gaps = 18/310 (5%)
Query: 35 LSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNGTE 94
L+ FY +CP+ +V + AS D I L+RL FHDCFV+GCD SVLL T
Sbjct: 2 LTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTI 61
Query: 95 RSD----PANASLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPT 150
S+ P S+ G +V++ K +E CP TVSCADI+A+AA + + GGP +P
Sbjct: 62 ESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPL 121
Query: 151 GRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAHTIGSAHCNAFND 210
GRRD + N+ F + ++ +F+ +GL+ DLVTLSG HT G A C+ F +
Sbjct: 122 GRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFIN 181
Query: 211 RFRE-----DPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYR 265
R +P D +L+++Y L +CP NA+ N D T FDN+YY
Sbjct: 182 RLYNFSNTGNP-------DPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYS 234
Query: 266 NLLAHKGLFQSDSVLLHDE--RTRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGE 323
NLL GL QSD L T V +F+++Q +FFSN+ +S +K+ +IGV T DEGE
Sbjct: 235 NLLQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGE 294
Query: 324 IRQTCSMTNG 333
IR C+ NG
Sbjct: 295 IRLQCNFVNG 304
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 165/306 (53%), Gaps = 10/306 (3%)
Query: 35 LSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNG-- 92
L+ FY SCP+ +V +T+ + D I +LRL FHDCFV GCDAS+LL
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 93 -TERSDPANA-SLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPT 150
TE+ NA S GF VID K +E CP TVSCAD++ +AA+ SV +AGGP+ ++P
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 151 GRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSM-DDLVTLSGAHTIGSAHCNAFN 209
GRRD + + AN+ FT+ ++ +F + GL+ DLV LSG H+ G C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFIM 181
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
DR L D +L+++Y L CP N + S V+ D T +FDN+YY NL
Sbjct: 182 DRLYN--FSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 270 HKGLFQSDSVLLHDER---TRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQ 326
KGL QSD L T V +FAN ++FF+ + + ++ +I T +G+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 327 TCSMTN 332
C + N
Sbjct: 300 NCRVVN 305
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 164/306 (53%), Gaps = 10/306 (3%)
Query: 35 LSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNG-- 92
L+ FY SCP+ +V +T+ + D I +LRL FHDCFV GCDAS+LL
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 93 -TERSDPANA-SLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPT 150
TE+ NA S GF VID K +E CP TVSCAD++ +AA+ SV +AGGP+ ++P
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 151 GRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSM-DDLVTLSGAHTIGSAHCNAFN 209
GRRD + + AN+ FT+ ++ +F + GL+ DLV L G HT G C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFIM 181
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
DR L D +L+++Y L CP N + S V+ D T +FDN+YY NL
Sbjct: 182 DRLYN--FSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 270 HKGLFQSDSVLLHDER---TRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQ 326
KGL QSD L T V +FAN ++FF+ + + ++ +I T +G+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 327 TCSMTN 332
C + N
Sbjct: 300 NCRVVN 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 187 bits (475), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 164/306 (53%), Gaps = 10/306 (3%)
Query: 35 LSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNG-- 92
L+ FY SCP+ +V +T+ + D I +LRL F DCFV GCDAS+LL
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTSF 62
Query: 93 -TERSDPANA-SLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPT 150
TE+ NA S GF VID K +E CP TVSCAD++ +AA+ SV +AGGP+ ++P
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 151 GRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSM-DDLVTLSGAHTIGSAHCNAFN 209
GRRD + + AN+ FT+ ++ +F + GL+ DLV LSG HT G C
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
DR L D +L+++Y L CP N + S V+ D T +FDN+YY NL
Sbjct: 183 DRLYN--FSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 240
Query: 270 HKGLFQSDSVLLHDER---TRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQ 326
KGL QSD L T V +FAN ++FF+ + + ++ +I T +G+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 327 TCSMTN 332
C + N
Sbjct: 301 NCRVVN 306
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 184 bits (468), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 116/306 (37%), Positives = 163/306 (53%), Gaps = 10/306 (3%)
Query: 35 LSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNG-- 92
L+ FY SCP+ +V +T+ + D I +L L F DCFV GCDAS+LL
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTSF 61
Query: 93 -TERSDPANA-SLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPT 150
TE+ NA S GF VID K +E CP TVSCAD++ +AA+ SV +AGGP+ ++P
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 151 GRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSM-DDLVTLSGAHTIGSAHCNAFN 209
GRRD + + AN+ FT+ ++ +F + GL+ DLV LSG HT G C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
DR L D +L+++Y L CP N + S V+ D T +FDN+YY NL
Sbjct: 182 DRLYN--FSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 270 HKGLFQSDSVLLHDER---TRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQ 326
KGL QSD L T V +FAN ++FF+ + + ++ +I T +G+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 327 TCSMTN 332
C + N
Sbjct: 300 NCRVVN 305
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 90/216 (41%), Gaps = 52/216 (24%)
Query: 109 IDSAKRVLEIFCP--GTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRAN 166
+D A R+LE VS AD LA +VEI GGP + GR D E
Sbjct: 73 LDIAVRLLEPIKEQFPIVSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEPPPEG---R 129
Query: 167 IVDTTFTMNEMIKAF-SSKGLSMDDLVTLSGAHTIGSAHC--NAFNDRFREDPKGKLTLI 223
+ D T + + F + GLS D+V LSG HTIG+AH + F + +P
Sbjct: 130 LPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAHKERSGFEGPWTSNP------- 182
Query: 224 DTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLAHK--GLFQ--SDSV 279
+FDN Y+ LL + GL Q SD
Sbjct: 183 ---------------------------------LIFDNSYFTELLTGEKDGLLQLPSDKA 209
Query: 280 LLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIG 315
LL D R VE +A D++ FF+++ + LK++ +G
Sbjct: 210 LLTDSVFRPLVEKYAADEDVFFADYAEAHLKLSELG 245
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 91/216 (42%), Gaps = 52/216 (24%)
Query: 109 IDSAKRVLEIFCP--GTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRAN 166
+D A R+LE +S AD LA +VE+ GGP + GR D E
Sbjct: 85 LDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG---R 141
Query: 167 IVDTTFTMNEMIKAF-SSKGLSMDDLVTLSGAHTIGSAHCNA--FNDRFREDPKGKLTLI 223
+ D T + + F + GL+ D+V LSG HTIG+AH A F + +P
Sbjct: 142 LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKEASGFEGPWTSNP------- 194
Query: 224 DTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA--HKGLFQ--SDSV 279
+FDN Y+ LL+ +GL Q SD
Sbjct: 195 ---------------------------------LIFDNSYFTELLSGEKEGLLQLPSDKA 221
Query: 280 LLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIG 315
LL D R V+ +A D+++FF+++ + K++ +G
Sbjct: 222 LLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 52/216 (24%)
Query: 109 IDSAKRVLEIFCP--GTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRAN 166
+D A R+LE +S AD LA +VE+ GGP + GR D E
Sbjct: 73 LDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG---R 129
Query: 167 IVDTTFTMNEMIKAF-SSKGLSMDDLVTLSGAHTIGSAHC--NAFNDRFREDPKGKLTLI 223
+ D T + + F + GL+ D+V LSG HTIG+AH + F + +P
Sbjct: 130 LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNP------- 182
Query: 224 DTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA--HKGLFQ--SDSV 279
+FDN Y+ LL+ +GL Q SD
Sbjct: 183 ---------------------------------LIFDNSYFTELLSGEKEGLLQLPSDKA 209
Query: 280 LLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIG 315
LL D R V+ +A D+++FF+++ + K++ +G
Sbjct: 210 LLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 245
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 52/216 (24%)
Query: 109 IDSAKRVLEIFCP--GTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRAN 166
+D A R+LE +S AD LA +VE+ GGP + GR D E
Sbjct: 85 LDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG---R 141
Query: 167 IVDTTFTMNEMIKAF-SSKGLSMDDLVTLSGAHTIGSAHC--NAFNDRFREDPKGKLTLI 223
+ D T + + F + GL+ D+V LSG HTIG+AH + F + +P
Sbjct: 142 LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNP------- 194
Query: 224 DTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA--HKGLFQ--SDSV 279
+FDN Y+ LL+ +GL Q SD
Sbjct: 195 ---------------------------------LIFDNSYFTELLSGEKEGLLQLPSDKA 221
Query: 280 LLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIG 315
LL D R V+ +A D+++FF+++ + K++ +G
Sbjct: 222 LLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 52/216 (24%)
Query: 109 IDSAKRVLEIFCP--GTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRAN 166
+D A R+LE +S AD LA +VE+ GGP + GR D E
Sbjct: 85 LDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG---R 141
Query: 167 IVDTTFTMNEMIKAF-SSKGLSMDDLVTLSGAHTIGSAHC--NAFNDRFREDPKGKLTLI 223
+ D T + + F + GL+ D+V LSG HTIG+AH + F + +P
Sbjct: 142 LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNP------- 194
Query: 224 DTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA--HKGLFQ--SDSV 279
+FDN Y+ LL+ +GL Q SD
Sbjct: 195 ---------------------------------LIFDNSYFTELLSGEKEGLLQLPSDKA 221
Query: 280 LLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIG 315
LL D R V+ +A D+++FF+++ + K++ +G
Sbjct: 222 LLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 52/216 (24%)
Query: 109 IDSAKRVLEIFCP--GTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRAN 166
+D A R+LE +S AD LA +VE+ GGP + GR D E
Sbjct: 73 LDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG---R 129
Query: 167 IVDTTFTMNEMIKAF-SSKGLSMDDLVTLSGAHTIGSAHC--NAFNDRFREDPKGKLTLI 223
+ D T + + F + GL+ D+V LSG HTIG+AH + F + +P
Sbjct: 130 LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNP------- 182
Query: 224 DTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA--HKGLFQ--SDSV 279
+FDN Y+ LL+ +GL Q SD
Sbjct: 183 ---------------------------------LIFDNSYFTELLSGEKEGLLQLPSDKA 209
Query: 280 LLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIG 315
LL D R V+ +A D+++FF+++ + K++ +G
Sbjct: 210 LLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 245
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 52/216 (24%)
Query: 109 IDSAKRVLEIFCP--GTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRAN 166
+D A R+LE +S AD LA +VE+ GGP + GR D E
Sbjct: 85 LDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG---R 141
Query: 167 IVDTTFTMNEMIKAF-SSKGLSMDDLVTLSGAHTIGSAHC--NAFNDRFREDPKGKLTLI 223
+ D T + + F + GL+ D+V LSG HTIG+AH + F + +P
Sbjct: 142 LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNP------- 194
Query: 224 DTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA--HKGLFQ--SDSV 279
+FDN Y+ LL+ +GL Q SD
Sbjct: 195 ---------------------------------LIFDNSYFTELLSGEKEGLLQLPSDKA 221
Query: 280 LLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIG 315
LL D R V+ +A D+++FF+++ + K++ +G
Sbjct: 222 LLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 52/216 (24%)
Query: 109 IDSAKRVLEIFCP--GTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRAN 166
+D A R+LE +S AD LA +VE+ GGP + GR D E
Sbjct: 73 LDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG---R 129
Query: 167 IVDTTFTMNEMIKAF-SSKGLSMDDLVTLSGAHTIGSAHC--NAFNDRFREDPKGKLTLI 223
+ D T + + F + GL+ D+V LSG HTIG+AH + F + +P
Sbjct: 130 LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNP------- 182
Query: 224 DTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA--HKGLFQ--SDSV 279
+FDN Y+ LL+ +GL Q SD
Sbjct: 183 ---------------------------------LIFDNSYFTELLSGEKEGLLQLPSDKA 209
Query: 280 LLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIG 315
LL D R V+ +A D+++FF+++ + K++ +G
Sbjct: 210 LLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 245
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 52/216 (24%)
Query: 109 IDSAKRVLEIFCP--GTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRAN 166
+D A R+LE +S AD LA +VE+ GGP + GR D E
Sbjct: 73 LDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG---R 129
Query: 167 IVDTTFTMNEMIKAF-SSKGLSMDDLVTLSGAHTIGSAHC--NAFNDRFREDPKGKLTLI 223
+ D T + + F + GL+ D+V LSG HTIG+AH + F + +P
Sbjct: 130 LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNP------- 182
Query: 224 DTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA--HKGLFQ--SDSV 279
+FDN Y+ LL+ +GL Q SD
Sbjct: 183 ---------------------------------LIFDNSYFTELLSGEKEGLLQLPSDKA 209
Query: 280 LLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIG 315
LL D R V+ +A D+++FF+++ + K++ +G
Sbjct: 210 LLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 245
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 52/216 (24%)
Query: 109 IDSAKRVLEIFCP--GTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRAN 166
+D A R+LE +S AD LA +VE+ GGP + GR D E
Sbjct: 85 LDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG---R 141
Query: 167 IVDTTFTMNEMIKAF-SSKGLSMDDLVTLSGAHTIGSAHC--NAFNDRFREDPKGKLTLI 223
+ D T + + F + GL+ D+V LSG HTIG+AH + F + +P
Sbjct: 142 LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNP------- 194
Query: 224 DTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA--HKGLFQ--SDSV 279
+FDN Y+ LL+ +GL Q SD
Sbjct: 195 ---------------------------------LIFDNSYFTELLSGEKEGLLQLPSDKA 221
Query: 280 LLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIG 315
LL D R V+ +A D+++FF+++ + K++ +G
Sbjct: 222 LLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 52/216 (24%)
Query: 109 IDSAKRVLEIFCP--GTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRAN 166
+D A R+LE +S AD LA +VE+ GGP + GR D E
Sbjct: 85 LDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG---R 141
Query: 167 IVDTTFTMNEMIKAF-SSKGLSMDDLVTLSGAHTIGSAHC--NAFNDRFREDPKGKLTLI 223
+ D T + + F + GL+ D+V LSG HTIG+AH + F + +P
Sbjct: 142 LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNP------- 194
Query: 224 DTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA--HKGLFQ--SDSV 279
+FDN Y+ LL+ +GL Q SD
Sbjct: 195 ---------------------------------LIFDNSYFTELLSGEKEGLLQLPSDKA 221
Query: 280 LLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIG 315
LL D R V+ +A D+++FF+++ + K++ +G
Sbjct: 222 LLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 52/216 (24%)
Query: 109 IDSAKRVLEIFCP--GTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRAN 166
+D A R+LE +S AD LA +VE+ GGP + GR D E
Sbjct: 85 LDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG---R 141
Query: 167 IVDTTFTMNEMIKAF-SSKGLSMDDLVTLSGAHTIGSAHC--NAFNDRFREDPKGKLTLI 223
+ D T + + F + GL+ D+V LSG HTIG+AH + F + +P
Sbjct: 142 LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNP------- 194
Query: 224 DTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA--HKGLFQ--SDSV 279
+FDN Y+ LL+ +GL Q SD
Sbjct: 195 ---------------------------------LIFDNSYFTELLSGEKEGLLQLPSDKA 221
Query: 280 LLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIG 315
LL D R V+ +A D+++FF+++ + K++ +G
Sbjct: 222 LLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 104/253 (41%), Gaps = 25/253 (9%)
Query: 69 LLRLLFHDCFVEGCDASVLLQGNGTERSDPANASLG--GFEVIDSAKRVLEIFCPGTVSC 126
L+RL +H+ C + + R P G G ++ A L+ P +S
Sbjct: 29 LIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYAGNKGLDIPRKALETLKKKYP-QISY 87
Query: 127 ADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGL 186
AD+ LAA ++E GGP I GR D + + + D + T + + + F G
Sbjct: 88 ADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRLGF 147
Query: 187 SMDDLVTLSGAHTIGSAHC--NAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANAS 244
+ + V L GAHT G H + ++ + D G D+S+ +L+
Sbjct: 148 NDQETVALIGAHTCGECHIEFSGYHGPWTHDKNG--------FDNSFFTQLL-------D 192
Query: 245 SSVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQESFFSNW 304
+N E + D + + + SD LL D RK VE +A D + F ++
Sbjct: 193 EDWVLNPKVEQMQLMDRATTKLM-----MLPSDVCLLLDPSYRKYVELYAKDNDRFNKDF 247
Query: 305 GLSFLKVTSIGVK 317
+F K+T +G +
Sbjct: 248 ANAFKKLTELGTR 260
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 104/253 (41%), Gaps = 25/253 (9%)
Query: 69 LLRLLFHDCFVEGCDASVLLQGNGTERSDPANASLG--GFEVIDSAKRVLEIFCPGTVSC 126
L+RL +H+ C + + R P G G ++ A L+ P +S
Sbjct: 30 LIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYAGNKGLDIPRKALETLKKKYP-QISY 88
Query: 127 ADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGL 186
AD+ LAA ++E GGP I GR D + + + D + T + + + F G
Sbjct: 89 ADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRLGF 148
Query: 187 SMDDLVTLSGAHTIGSAHC--NAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANAS 244
+ + V L GAHT G H + ++ + D G D+S+ +L+
Sbjct: 149 NDQETVALIGAHTCGECHIEFSGYHGPWTHDKNG--------FDNSFFTQLL-------D 193
Query: 245 SSVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQESFFSNW 304
+N E + D + + + SD LL D RK VE +A D + F ++
Sbjct: 194 EDWVLNPKVEQMQLMDRATTKLM-----MLPSDVCLLLDPSYRKYVELYAKDNDRFNKDF 248
Query: 305 GLSFLKVTSIGVK 317
+F K+T +G +
Sbjct: 249 ANAFKKLTELGTR 261
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 104/253 (41%), Gaps = 25/253 (9%)
Query: 69 LLRLLFHDCFVEGCDASVLLQGNGTERSDPANASLG--GFEVIDSAKRVLEIFCPGTVSC 126
L+RL +H+ C + + R P G G ++ A L+ P +S
Sbjct: 30 LIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYAGNKGLDIPRKALETLKKKYP-QISY 88
Query: 127 ADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGL 186
AD+ LAA ++E GGP I GR D + + + D + T + + + F G
Sbjct: 89 ADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRLGF 148
Query: 187 SMDDLVTLSGAHTIGSAHC--NAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANAS 244
+ + V L GAHT G H + ++ + D G D+S+ +L+
Sbjct: 149 NDQETVALIGAHTCGETHIEFSGYHGPWTHDKNG--------FDNSFFTQLL-------D 193
Query: 245 SSVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQESFFSNW 304
+N E + D + + + SD LL D RK VE +A D + F ++
Sbjct: 194 EDWVLNPKVEQMQLMDRATTKLM-----MLPSDVCLLLDPSYRKYVELYAKDNDRFNKDF 248
Query: 305 GLSFLKVTSIGVK 317
+F K+T +G +
Sbjct: 249 ANAFKKLTELGTR 261
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 106/261 (40%), Gaps = 36/261 (13%)
Query: 69 LLRLLFHDCFVEGCDASVLLQ---GNGTERSD---PANASLGGFEVIDSAKRVLEIFCPG 122
++RL +HD + Q NG+ R D A+ G ++ K + + +
Sbjct: 28 MVRLGWHDAGTYNKNIEEWPQRGGANGSLRFDVELKHGANAGLVNALNLLKPIKDKYS-- 85
Query: 123 TVSCADIIALAARDSVEIAGGPAIQIPTGRRD--GRASAAENVRANIVDTTFTMNEMIKA 180
V+ AD+ LA+ ++E AGGP I + GR D E R +
Sbjct: 86 GVTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDV 145
Query: 181 FSSKGLSMDDLVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCP 240
F GL+ ++V LSGAHT+G R R D G ++ Y + P
Sbjct: 146 FYRMGLNDKEIVALSGAHTLG---------RSRPDRSGW-----GKPETKYTKD-GPGAP 190
Query: 241 ANASSSVTVNNDPETSFVFDNQYYRNLLAHKG----LFQSDSVLLHDERTRKQVENFAND 296
S + FDN Y++++ + + +D+ L D + E +A D
Sbjct: 191 GGQSWTAQW-------LKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAAD 243
Query: 297 QESFFSNWGLSFLKVTSIGVK 317
E+FF ++ + K++++G K
Sbjct: 244 PEAFFKDYAEAHAKLSNLGAK 264
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 98/246 (39%), Gaps = 70/246 (28%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D + ++ F + L+M+D +V LSGAHT+G H
Sbjct: 131 VDTPEDTTPDNGRLPDADKD---ADYVRTFFQR-LNMNDREVVALSGAHTLGKTHLK--- 183
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLL- 268
+S Y T NN+ VFDN +Y NLL
Sbjct: 184 ------------------NSGY------------EGPWTANNN-----VFDNSFYLNLLN 208
Query: 269 ----------------AHKGLFQ--SDSVLLHDERTRKQVENFANDQESFFSNWGLSFLK 310
+ G Q +D L+ D + V+ +ANDQ+ FF ++ +F K
Sbjct: 209 EDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 268
Query: 311 VTSIGV 316
+ G+
Sbjct: 269 LLENGI 274
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 97/246 (39%), Gaps = 70/246 (28%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D + ++ F + L+M+D +V L GAHT+G H
Sbjct: 131 VDTPEDTTPDNGRLPDADKD---ADYVRTFFQR-LNMNDREVVALMGAHTLGKTHLK--- 183
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLL- 268
+S Y T NN+ VFDN +Y NLL
Sbjct: 184 ------------------NSGY------------EGPWTANNN-----VFDNSFYLNLLN 208
Query: 269 ----------------AHKGLFQ--SDSVLLHDERTRKQVENFANDQESFFSNWGLSFLK 310
+ G Q +D L+ D + V+ +ANDQ+ FF ++ +F K
Sbjct: 209 EDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 268
Query: 311 VTSIGV 316
+ G+
Sbjct: 269 LLENGI 274
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 98/228 (42%), Gaps = 34/228 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D + ++ F + L+M+D +V L GAHT+G H N
Sbjct: 131 VDTPEDTTPDNGRLPDADKD---ADYVRTFFQR-LNMNDREVVALMGAHTLGKTHLK--N 184
Query: 210 DRFREDPKGKLTLIDTSLDSS-YANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLL 268
+ +G T + D+S Y N L + + D ++ ++
Sbjct: 185 SGY----EGPWTANNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYM---------- 230
Query: 269 AHKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 231 ----MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 98/246 (39%), Gaps = 70/246 (28%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D + ++ F + L+M+D +V L GAHT+G H
Sbjct: 131 VDTPEDTTPDNGRLPDADKD---ADYVRTFFQR-LNMNDREVVALMGAHTLGKTHLK--- 183
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+S Y + P +A+++ VFDN +Y NLL
Sbjct: 184 ------------------NSGY------EGPWDATNN-----------VFDNSFYLNLLN 208
Query: 270 HKG-------------------LFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLK 310
+ +D L+ D + V+ +ANDQ+ FF ++ +F K
Sbjct: 209 EDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 268
Query: 311 VTSIGV 316
+ G+
Sbjct: 269 LLENGI 274
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 97/228 (42%), Gaps = 34/228 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D + ++ F + L+M+D +V L GAHT+G H N
Sbjct: 131 VDTPEDTTPDNGRLPDADKD---ADYVRTFFQR-LNMNDREVVALMGAHTLGKTHLK--N 184
Query: 210 DRFREDPKGKLTLIDTSLDSS-YANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLL 268
+ +G T D+S Y N L + + D ++ ++
Sbjct: 185 SGY----EGPWTANPNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYM---------- 230
Query: 269 AHKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 231 ----MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 127
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 128 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 180
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P+G + T+ Y N L + + D ++ ++
Sbjct: 181 NSGYEGPQGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 227
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 228 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDGI 271
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D + ++ F + L+M+D +V L GAH +G H
Sbjct: 131 VDTPEDTTPDNGRLPDADKD---ADYVRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 183
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 184 NSGYEGPWGAANNVFTN--EFYLNLLNENWKLEKNDANNEQWDSKSGYM----------- 230
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 231 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D + ++ F + L+M+D +V L GAH +G H
Sbjct: 131 VDTPEDTTPDNGRLPDADKD---ADYVRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 183
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 184 NSGYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 230
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 231 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D + ++ F + L+M+D +V L GAH +G H
Sbjct: 131 VDTPEDTTPDNGRLPDADKD---ADYVRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 183
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 184 NSGYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 230
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 231 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDGI 274
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D + ++ F + L+M+D +V L GAH +G H
Sbjct: 131 VDTPEDTTPDNGRLPDADKD---ADYVRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 183
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 184 NSGYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 230
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 231 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D + ++ F + L+M+D +V L GAH +G H
Sbjct: 131 VDTPEDTTPDNGRLPDADKD---ADYVRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 183
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 184 NSGYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 230
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 231 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 75 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 129
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D + ++ F + L+M+D +V L GAH +G H
Sbjct: 130 VDTPEDTTPDNGRLPDADKD---ADYVRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 182
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 183 NSGYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 229
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 230 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 273
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEWQGPKIPWRCGR 132
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D + ++ F + L+M+D +V L GAH +G H
Sbjct: 133 VDTPEDTTPDNGRLPDADKD---ADYVRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 185
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 186 NSGYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 232
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 233 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 276
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 127
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 128 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 180
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 181 NSGYEGPWGAANNVFTN--EKYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 227
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 228 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 271
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 132
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 133 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 185
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P+G + T+ Y N L + + D ++ ++
Sbjct: 186 NSGYEGPQGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 232
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 233 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 276
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 127
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D + ++ F + L+M+D +V L GAH +G H
Sbjct: 128 VDTPEDTTPDNGRLPDADKD---ADYVRTFFQR-LNMNDREVVALMGAHALGKTHLKRSG 183
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
E P G + T+ Y N L + + D ++ ++
Sbjct: 184 ---YEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 227
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 228 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 271
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 131 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 183
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 184 NSGYEGPWGAANNVFTN--EGYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 230
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 231 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 132
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D + ++ F + L+M+D +V L GAH +G H
Sbjct: 133 VDTPEDTTPDNGRLPDADKD---ADYVRTFFQR-LNMNDREVVALMGAHALGKTHLKRSG 188
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
E P G + T+ Y N L + + D ++ ++
Sbjct: 189 ---YEGPWGAANNVFTN--EFYLNLLNENWKLEKNDANNEQWDSKSGYM----------- 232
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 233 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 276
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D + ++ F + L+M+D +V L GAH +G H
Sbjct: 131 VDTPEDTTPDNGRLPDADKD---ADYVRTFFQR-LNMNDREVVALMGAHALGKTHLKRSG 186
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
E P G + T+ Y N L + + D ++ ++
Sbjct: 187 ---YEGPWGAANNVFTN--EFYLNLLNENWKLEKNDANNEQWDSKSGYM----------- 230
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 231 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 132
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 133 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 185
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 186 NSGYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYI----------- 232
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 233 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 276
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R +D ++ F + L+M+D +V L GAH +G H
Sbjct: 131 VDTPEDTTPDNGRLPDMDKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 183
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 184 NSGYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 230
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 231 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 78 EFNDPWNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 132
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D + ++ F + L+M+D +V L GAH +G H
Sbjct: 133 VDTPEDTTPDNGRLPDADKD---ADYVRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 185
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 186 NSGYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 232
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 233 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 276
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 127
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 128 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 180
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 181 NSGYEGPWGAANNVFTN--EYYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 227
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 228 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 271
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 132
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D + ++ F + L+M+D +V L GAH +G H
Sbjct: 133 VDTPEDTTPDNGRLPDADKD---ADYVRTFFQR-LNMNDREVVALMGAHALGKTHLKRSG 188
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
E P G + T+ Y N L + + D ++ ++
Sbjct: 189 ---YEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 232
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 233 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 276
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 127
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 128 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALKGAHALGKTHLK--- 180
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 181 NSGYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 227
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 228 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 271
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 127
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 128 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 180
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 181 NSGYEGPYGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 227
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 228 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDGI 271
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 127
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 128 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 180
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 181 NSGYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 227
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 228 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDGI 271
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 131 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 183
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 184 NSGYEGPGGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 230
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 231 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDGI 274
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 110/277 (39%), Gaps = 39/277 (14%)
Query: 51 VANTVRSASSFDRTIPGK--LLRLLFHDCFVEGCDASVLLQGNGTER-----SDPANASL 103
+A +R +D I L+RL FH + GT R +DP+NA L
Sbjct: 28 IALKLREDDEYDNYIGYGPVLVRLAFHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGL 87
Query: 104 -GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGRRD-GRASAAE 161
GF+ ++ + +S D+ +L +V+ GP I GR D + +
Sbjct: 88 QNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD 142
Query: 162 NVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFNDRFREDPKGK 219
N R D ++ F + L+M+D +V L GAH +G H + E P G
Sbjct: 143 NGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK---NSGYEGPWGA 195
Query: 220 LTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSV 279
+ T+ Y N L + + D ++ ++ + +D
Sbjct: 196 ANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM--------------MLPTDYS 239
Query: 280 LLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 240 LIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 276
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 132
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 133 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 185
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 186 NSGYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 232
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 233 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 276
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 132
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 133 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 185
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 186 NSGYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 232
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 233 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 276
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 131 VDTPEDTTPDNGRLPDYDKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 183
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 184 NSGYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 230
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 231 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 132
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 133 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 185
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 186 NSGYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 232
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 233 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 276
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 69 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 123
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D + ++ F + L+M+D +V L GAH +G H
Sbjct: 124 VDTPEDTTPDNGRLPDADKD---ADYVRTFFQR-LNMNDREVVALMGAHALGKTHLKRSG 179
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
E P G + T + Y N L + + D ++ ++
Sbjct: 180 ---YEGPFGAANNVFT--NEFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 223
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 224 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 267
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 132
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 133 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 185
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 186 NSGYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 232
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 233 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 276
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 127
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 128 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 180
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 181 NSGYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 227
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 228 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 271
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 127
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 128 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 180
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 181 NSGYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 227
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 228 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDGI 271
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 127
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 128 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 180
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 181 NSGYEGPGGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 227
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 228 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDGI 271
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 79 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 133
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 134 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 186
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 187 NSGYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 233
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 234 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 277
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 74 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 128
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 129 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 181
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 182 NSGYEGPGGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 228
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 229 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDGI 272
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 131 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 183
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 184 NSGYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 230
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 231 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 131 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 183
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 184 NSGYEGPGGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 230
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 231 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 132
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 133 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 185
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 186 NSGYEGPGGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 232
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 233 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 276
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 131 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 183
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 184 NSGYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 230
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 231 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRAGR 130
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D + ++ F + L+M+D +V L GAH +G H
Sbjct: 131 VDTPEDTTPDNGRLPDADKD---ADYVRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 183
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G T+ Y N L + + D ++ ++
Sbjct: 184 NSGYEGPWGAANNCFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 230
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 231 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 75 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 129
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D + ++ F + L+M+D +V L GAH +G H
Sbjct: 130 VDTPEDTTPDNGRLPDADKD---ADYVRTFFQR-LNMNDREVVALMGAHALGKTHLKRSG 185
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
E P G + T+ Y N L + + D ++ ++
Sbjct: 186 ---YEGPFGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 229
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 230 ---MLPTDYSLIQDPKYLSIVKEYANDQDRFFKDFSKAFEKLLENGI 273
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRAGR 132
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 133 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 185
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 186 NSGYEGPWGCANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 232
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 233 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 276
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 132
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 133 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 185
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 186 NSGYEGPFGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 232
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 233 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 276
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 93/227 (40%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 127
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 128 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 180
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 181 NSGYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYMH---------- 228
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 229 ----LPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 271
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 79 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 133
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 134 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 186
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T + Y N L + + D ++ ++
Sbjct: 187 NSGYEGPWGAANNVFT--NEFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 233
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ ++ L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 234 ---MLPTEYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 277
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 132
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 133 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 185
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T + Y N L + + D ++ ++
Sbjct: 186 NSGYEGPWGAANNVFT--NEFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 232
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ ++ L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 233 ---MLPTNYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 276
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 131 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 183
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T + Y N L + + D ++ ++
Sbjct: 184 NSGYEGPGGAANNVFT--NEFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 230
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ ++ L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 231 ---MLPTNYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 93/227 (40%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D + ++ F + L+M+D +V L GAH +G H
Sbjct: 131 VDTPEDTTPDNGRLPDADKD---ADYVRTFFQR-LNMNDREVVALMGAHALGKTHLKRSG 186
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
E P G + T+ Y N L + + D ++ ++
Sbjct: 187 ---YEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 230
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ + L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 231 ---MLPTXYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 93/227 (40%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 127
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G
Sbjct: 128 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTELK--- 180
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 181 NSGYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 227
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 228 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 271
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 93/227 (40%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 79 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 133
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 134 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLK--- 186
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T + Y N L + + D ++ ++
Sbjct: 187 NSGYEGPWGAANNVFT--NEFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 233
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ + L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 234 ---MLPTAYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 277
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 91/238 (38%), Gaps = 56/238 (23%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 79 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 133
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHC---- 205
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 134 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLKNSG 189
Query: 206 -------NAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFV 258
N F + F Y N L + + D ++ ++
Sbjct: 190 YEGGGANNVFTNEF------------------YLNLLNEDWKLEKNDANNEQWDSKSGYM 231
Query: 259 FDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 232 --------------MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 275
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 91/238 (38%), Gaps = 56/238 (23%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 127
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHC---- 205
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 128 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLKNSG 183
Query: 206 -------NAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFV 258
N F + F Y N L + + D ++ ++
Sbjct: 184 YEGGGANNVFTNEF------------------YLNLLNEDWKLEKNDANNEQWDSKSGYM 225
Query: 259 FDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 226 --------------MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 269
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 91/238 (38%), Gaps = 56/238 (23%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 74 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 128
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHC---- 205
D + +N R D ++ F + L+M+D +V L GAH +G H
Sbjct: 129 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAHALGKTHLKNSG 184
Query: 206 -------NAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFV 258
N F + F Y N L + + D ++ ++
Sbjct: 185 YEGGGANNVFTNEF------------------YLNLLNEDWKLEKNDANNEQWDSKSGYM 226
Query: 259 FDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 227 --------------MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 270
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 93/227 (40%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 74 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 128
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GA +G H
Sbjct: 129 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAGALGKTHLK--- 181
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 182 NSGYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 228
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 229 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 272
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 93/227 (40%), Gaps = 32/227 (14%)
Query: 94 ERSDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
E +DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGR 127
Query: 153 RD-GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFN 209
D + +N R D ++ F + L+M+D +V L GA +G H
Sbjct: 128 VDTPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAGALGKTHLK--- 180
Query: 210 DRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA 269
+ E P G + T+ Y N L + + D ++ ++
Sbjct: 181 NSGYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM----------- 227
Query: 270 HKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 228 ---MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 271
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 92/225 (40%), Gaps = 32/225 (14%)
Query: 96 SDPANASL-GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGRRD 154
+DP+NA L GF+ ++ + +S D+ +L +V+ GP I GR D
Sbjct: 76 NDPSNAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD 130
Query: 155 -GRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD--LVTLSGAHTIGSAHCNAFNDR 211
+ +N R D ++ F + L+M+D +V L GA +G H +
Sbjct: 131 TPEDTTPDNGRLPDADKDAGY---VRTFFQR-LNMNDREVVALMGAGALGKTHLK---NS 183
Query: 212 FREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLAHK 271
E P G + T+ Y N L + + D ++ ++
Sbjct: 184 GYEGPWGAANNVFTN--EFYLNLLNEDWKLEKNDANNEQWDSKSGYM------------- 228
Query: 272 GLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGV 316
+ +D L+ D + V+ +ANDQ+ FF ++ +F K+ G+
Sbjct: 229 -MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 272
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 67 GKLLRLLFHDCFVEGCDASVLLQGNGTERSDPANASLGGFEVIDSAKRVLEIFCPGTVSC 126
GK LR+ F+DC +G + VLL G+G + AN S ++++ RV+ + CPG
Sbjct: 22 GKTLRIHFNDC-GQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKS 80
Query: 127 ADIIALAAR 135
++ +R
Sbjct: 81 DSVVNSGSR 89
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 105/258 (40%), Gaps = 42/258 (16%)
Query: 70 LRLLFHDCFV-------EGCDASVLLQGNGTERSDPANASLGGFEVIDSAKRVLEIFCPG 122
LRL FHD G D S++ + E + PANA G + I SA++
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSII-AFDTIETNFPANA---GIDEIVSAQK--PFVAKH 95
Query: 123 TVSCADIIALAARDSVEIAGGPAIQIP--TGRRDGRASAAENVRANIVDTTFTMNEMIKA 180
+S D I A V G ++IP GR D A++ +++ D+ ++ ++
Sbjct: 96 NISAGDFIQFAGAVGVSNCPG-GVRIPFFLGRPDAVAASPDHLVPEPFDS---VDSILAR 151
Query: 181 FSSKGLSMDDLVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTS---LDSSYANELMR 237
G S ++V L +H+I +A + DP T D++ DS + E
Sbjct: 152 MGDAGFSPVEVVWLLASHSIAAAD--------KVDPSIPGTPFDSTPGVFDSQFFIETQL 203
Query: 238 KCPANASSSVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQ 297
K T +N E ++ L + QSD +L D +T + ++F N+Q
Sbjct: 204 K---GRLFPGTADNKGEA---------QSPLQGEIRLQSDHLLARDPQTACEWQSFVNNQ 251
Query: 298 ESFFSNWGLSFLKVTSIG 315
+ + + K+ +G
Sbjct: 252 PKIQNRFAATMSKMALLG 269
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 105/258 (40%), Gaps = 42/258 (16%)
Query: 70 LRLLFHDCFV-------EGCDASVLLQGNGTERSDPANASLGGFEVIDSAKRVLEIFCPG 122
LRL FHD G D S++ + E + PANA G + I SA++
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAF-DTIETNFPANA---GIDEIVSAQK--PFVAKH 95
Query: 123 TVSCADIIALAARDSVEIAGGPAIQIP--TGRRDGRASAAENVRANIVDTTFTMNEMIKA 180
+S D I A V G ++IP GR D A++ +++ D+ ++ ++
Sbjct: 96 NISAGDFIQFAGAVGVSNCPG-GVRIPFFLGRPDAVAASPDHLVPEPFDS---VDSILAR 151
Query: 181 FSSKGLSMDDLVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTS---LDSSYANELMR 237
G S ++V+L +H+I +A + DP T D++ DS + E
Sbjct: 152 MGDAGFSPVEVVSLLASHSIAAAD--------KVDPSIPGTPFDSTPGVFDSQFFIETQL 203
Query: 238 KCPANASSSVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQ 297
K T +N E ++ L + QSD +L D +T + ++ N+Q
Sbjct: 204 K---GRLFPGTADNKGEA---------QSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQ 251
Query: 298 ESFFSNWGLSFLKVTSIG 315
+ + + K+ +G
Sbjct: 252 PKIQNRFAATMSKMALLG 269
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 104/258 (40%), Gaps = 42/258 (16%)
Query: 70 LRLLFHDCFV-------EGCDASVLLQGNGTERSDPANASLGGFEVIDSAKRVLEIFCPG 122
LRL FHD G D S++ + E + PANA G + I SA++
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSII-AFDTIETNFPANA---GIDEIVSAQK--PFVAKH 95
Query: 123 TVSCADIIALAARDSVEIAGGPAIQIP--TGRRDGRASAAENVRANIVDTTFTMNEMIKA 180
+S D I A V G ++IP GR D A++ +++ D+ ++ ++
Sbjct: 96 NISAGDFIQFAGAVGVSNCPG-GVRIPFFLGRPDAVAASPDHLVPEPFDS---VDSILAR 151
Query: 181 FSSKGLSMDDLVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTS---LDSSYANELMR 237
G S ++V L +H+I +A + DP T D++ DS + E
Sbjct: 152 MGDAGFSPVEVVYLLASHSIAAAD--------KVDPSIPGTPFDSTPGVFDSQFFIETQL 203
Query: 238 KCPANASSSVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQ 297
K T +N E ++ L + QSD +L D +T + ++ N+Q
Sbjct: 204 K---GRLFPGTADNKGEA---------QSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQ 251
Query: 298 ESFFSNWGLSFLKVTSIG 315
+ + + K+ +G
Sbjct: 252 PKIQNRFAATMSKMALLG 269
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 104/258 (40%), Gaps = 42/258 (16%)
Query: 70 LRLLFHDCFV-------EGCDASVLLQGNGTERSDPANASLGGFEVIDSAKRVLEIFCPG 122
LRL FHD G D S++ + E + PANA G + I SA++
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSII-AFDTIETNFPANA---GIDEIVSAQK--PFVAKH 95
Query: 123 TVSCADIIALAARDSVEIAGGPAIQIP--TGRRDGRASAAENVRANIVDTTFTMNEMIKA 180
+S D I A V G ++IP GR D A++ +++ D+ ++ ++
Sbjct: 96 NISAGDFIQFAGAVGVSNCPG-GVRIPFFLGRPDAVAASPDHLVPEPFDS---VDSILAR 151
Query: 181 FSSKGLSMDDLVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTS---LDSSYANELMR 237
G S ++V L +H+I +A + DP T D++ DS + E
Sbjct: 152 MGDAGFSPVEVVWLLASHSIAAAD--------KVDPSIPGTPFDSTPGVFDSQFFIETQL 203
Query: 238 KCPANASSSVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQ 297
K T +N E ++ L + QSD +L D +T + ++ N+Q
Sbjct: 204 K---GRLFPGTADNKGEA---------QSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQ 251
Query: 298 ESFFSNWGLSFLKVTSIG 315
+ + + K+ +G
Sbjct: 252 PKIQNRFAATMSKMALLG 269
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 104/258 (40%), Gaps = 42/258 (16%)
Query: 70 LRLLFHDCFV-------EGCDASVLLQGNGTERSDPANASLGGFEVIDSAKRVLEIFCPG 122
LRL FHD G D S++ + E + PANA G + I SA++
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSII-AFDTIETNFPANA---GIDEIVSAQK--PFVAKH 95
Query: 123 TVSCADIIALAARDSVEIAGGPAIQIP--TGRRDGRASAAENVRANIVDTTFTMNEMIKA 180
+S D I A V G ++IP GR D A++ +++ D+ ++ ++
Sbjct: 96 NISAGDFIQFAGAVGVSNCPG-GVRIPFFLGRPDAVAASPDHLVPEPFDS---VDSILAR 151
Query: 181 FSSKGLSMDDLVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTS---LDSSYANELMR 237
G S ++V L +H+I +A + DP T D++ DS + E
Sbjct: 152 MGDAGFSPVEVVWLLASHSIAAAD--------KVDPSIPGTPFDSTPQVFDSQFFIETQL 203
Query: 238 KCPANASSSVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQ 297
K T +N E ++ L + QSD +L D +T + ++ N+Q
Sbjct: 204 K---GRLFPGTADNKGEA---------QSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQ 251
Query: 298 ESFFSNWGLSFLKVTSIG 315
+ + + K+ +G
Sbjct: 252 PKIQNRFAATMSKMALLG 269
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 104/258 (40%), Gaps = 42/258 (16%)
Query: 70 LRLLFHDCFV-------EGCDASVLLQGNGTERSDPANASLGGFEVIDSAKRVLEIFCPG 122
LRL FHD G D S++ + E + PANA G + I SA++
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSII-AFDTIETNFPANA---GIDEIVSAQK--PFVAKH 95
Query: 123 TVSCADIIALAARDSVEIAGGPAIQIP--TGRRDGRASAAENVRANIVDTTFTMNEMIKA 180
+S D I A V G ++IP GR D A++ +++ D+ ++ ++
Sbjct: 96 NISAGDFIQFAGAVGVSNCPG-GVRIPFFLGRPDAVAASPDHLVPEPFDS---VDSILAR 151
Query: 181 FSSKGLSMDDLVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTS---LDSSYANELMR 237
G S ++V L +H+I +A + DP T D++ DS + E
Sbjct: 152 MGDAGFSPVEVVWLLASHSIAAAD--------KVDPSIPGTPFDSTPEVFDSQFFIETQL 203
Query: 238 KCPANASSSVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQ 297
K T +N E ++ L + QSD +L D +T + ++ N+Q
Sbjct: 204 K---GRLFPGTADNKGEA---------QSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQ 251
Query: 298 ESFFSNWGLSFLKVTSIG 315
+ + + K+ +G
Sbjct: 252 PKIQNRFAATMSKMALLG 269
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 104/258 (40%), Gaps = 42/258 (16%)
Query: 70 LRLLFHDCFV-------EGCDASVLLQGNGTERSDPANASLGGFEVIDSAKRVLEIFCPG 122
LRL FHD G D S++ + E + PANA G + I SA++
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSII-AFDTIETNFPANA---GIDEIVSAQK--PFVAKH 95
Query: 123 TVSCADIIALAARDSVEIAGGPAIQIP--TGRRDGRASAAENVRANIVDTTFTMNEMIKA 180
+S D I A V G ++IP GR D A++ +++ D+ ++ ++
Sbjct: 96 NISAGDFIQFAGAVGVSNCPG-GVRIPFFLGRPDAVAASPDHLVPGPFDS---VDSILAR 151
Query: 181 FSSKGLSMDDLVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTS---LDSSYANELMR 237
G S ++V L +H+I +A + DP T D++ DS + E
Sbjct: 152 MGDAGFSPVEVVWLLASHSIAAAD--------KVDPSIPGTPFDSTPEVFDSQFFIETQL 203
Query: 238 KCPANASSSVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQ 297
K T +N E ++ L + QSD +L D +T + ++ N+Q
Sbjct: 204 K---GRLFPGTADNKGEA---------QSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQ 251
Query: 298 ESFFSNWGLSFLKVTSIG 315
+ + + K+ +G
Sbjct: 252 PKIQNRFAATMSKMALLG 269
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 104/258 (40%), Gaps = 42/258 (16%)
Query: 70 LRLLFHDCFV-------EGCDASVLLQGNGTERSDPANASLGGFEVIDSAKRVLEIFCPG 122
LRL FHD G D S++ + E + PANA G + I SA++
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSII-AFDTIETNFPANA---GIDEIVSAQK--PFVAKH 95
Query: 123 TVSCADIIALAARDSVEIAGGPAIQIP--TGRRDGRASAAENVRANIVDTTFTMNEMIKA 180
+S D I A V G ++IP GR D A++ +++ D+ ++ ++
Sbjct: 96 NISAGDFIQFAGAVGVSNCPG-GVRIPFFLGRPDAVAASPDHLVPEPFDS---VDSILAR 151
Query: 181 FSSKGLSMDDLVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTS---LDSSYANELMR 237
G S ++V L +H+I +A + DP T D++ DS + E
Sbjct: 152 MGDAGFSPVEVVWLLASHSIAAAD--------KVDPSIPGTPFDSTPEVFDSQFFIETQL 203
Query: 238 KCPANASSSVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQ 297
K T +N E ++ L + QSD +L D +T + ++ N+Q
Sbjct: 204 K---GRLFPGTADNKGEA---------QSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQ 251
Query: 298 ESFFSNWGLSFLKVTSIG 315
+ + + K+ +G
Sbjct: 252 PKIQNRFAATMSKMALLG 269
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 104/258 (40%), Gaps = 42/258 (16%)
Query: 70 LRLLFHDCFV-------EGCDASVLLQGNGTERSDPANASLGGFEVIDSAKRVLEIFCPG 122
LRL FHD G D S++ + E + PANA G + I SA++
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSII-AFDTIETNFPANA---GIDEIVSAQK--PFVAKH 95
Query: 123 TVSCADIIALAARDSVEIAGGPAIQIP--TGRRDGRASAAENVRANIVDTTFTMNEMIKA 180
+S D I A V G ++IP GR D A++ +++ D+ ++ ++
Sbjct: 96 NISAGDFIQFAGAVGVSNCPG-GVRIPFFLGRPDAVAASPDHLVPGPFDS---VDSILAR 151
Query: 181 FSSKGLSMDDLVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTS---LDSSYANELMR 237
G S ++V L +H+I +A + DP T D++ DS + E
Sbjct: 152 MGDAGFSPVEVVWLLASHSIAAAD--------KVDPSIPGTPFDSTPEVFDSQFFIETQL 203
Query: 238 KCPANASSSVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQ 297
K T +N E ++ L + QSD +L D +T + ++ N+Q
Sbjct: 204 K---GRLFPGTADNKGEA---------QSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQ 251
Query: 298 ESFFSNWGLSFLKVTSIG 315
+ + + K+ +G
Sbjct: 252 PKIQNRFAATMSKMALLG 269
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 104/258 (40%), Gaps = 42/258 (16%)
Query: 70 LRLLFHDCFV-------EGCDASVLLQGNGTERSDPANASLGGFEVIDSAKRVLEIFCPG 122
LRL FHD G D S++ + E + PANA G + I SA++
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSII-AFDTIETNFPANA---GIDEIVSAQK--PFVAKH 95
Query: 123 TVSCADIIALAARDSVEIAGGPAIQIP--TGRRDGRASAAENVRANIVDTTFTMNEMIKA 180
+S D I A V G ++IP GR D A++ +++ D+ ++ ++
Sbjct: 96 NISAGDFIQFAGAVGVSNCPG-GVRIPFFLGRPDAVAASPDHLVPEPQDS---VDSILAR 151
Query: 181 FSSKGLSMDDLVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTS---LDSSYANELMR 237
G S ++V L +H+I +A + DP T D++ DS + E
Sbjct: 152 MGDAGFSPVEVVWLLASHSIAAAD--------KVDPSIPGTPFDSTPGVFDSQFFIETQL 203
Query: 238 KCPANASSSVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQ 297
K T +N E ++ L + QSD +L D +T + ++ N+Q
Sbjct: 204 K---GRLFPGTADNKGEA---------QSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQ 251
Query: 298 ESFFSNWGLSFLKVTSIG 315
+ + + K+ +G
Sbjct: 252 PKIQNRFAATMSKMALLG 269
>pdb|4FEF|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 104/258 (40%), Gaps = 42/258 (16%)
Query: 70 LRLLFHDCFV-------EGCDASVLLQGNGTERSDPANASLGGFEVIDSAKRVLEIFCPG 122
LRL FHD G D S++ + E + PANA G + I SA++
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSII-AFDTIETNFPANA---GIDEIVSAQK--PFVAKH 95
Query: 123 TVSCADIIALAARDSVEIAGGPAIQIP--TGRRDGRASAAENVRANIVDTTFTMNEMIKA 180
+S D I A V G ++IP GR D A++ +++ D+ ++ ++
Sbjct: 96 NISAGDFIQFAGAVGVSNCPG-GVRIPFFLGRPDAVAASPDHLVPEGFDS---VDSILAR 151
Query: 181 FSSKGLSMDDLVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTS---LDSSYANELMR 237
G S ++V L +H+I +A + DP T D++ DS + E
Sbjct: 152 MGDAGFSPVEVVWLLASHSIAAAD--------KVDPSIPGTPFDSTPEVFDSQFFIETQL 203
Query: 238 KCPANASSSVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQ 297
K T +N E ++ L + QSD +L D +T + ++ N+Q
Sbjct: 204 K---GRLFPGTADNKGEA---------QSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQ 251
Query: 298 ESFFSNWGLSFLKVTSIG 315
+ + + K+ +G
Sbjct: 252 PKIQNRFAATMSKMALLG 269
>pdb|1B82|A Chain A, Pristine Recomb. Lignin Peroxidase H8
pdb|1B82|B Chain B, Pristine Recomb. Lignin Peroxidase H8
Length = 351
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 45/185 (24%)
Query: 176 EMIKAFSSK-GLSMDDLVTLSGAHTI----GSAHCNAFNDR---FREDPKGKLT------ 221
++ K F K G++ D + +GA + G+ N F R + P G +
Sbjct: 99 KLQKPFVQKHGVTPGDFIAFAGAVALSNCPGAPQMNFFTGRAPATQPAPDGLVPEPFHTV 158
Query: 222 --LIDTSLDSSYANELMRKCPANASSSVTVNN-DP--------ETSFVFDNQYY------ 264
+I+ D+ +EL +A S VN+ DP T +FD+Q++
Sbjct: 159 DQIINRVNDAGEFDELELVWMLSAHSVAAVNDVDPTVQGLPFDSTPGIFDSQFFVETQLR 218
Query: 265 --------------RNLLAHKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLK 310
+ L + QSD + D RT + ++F N+Q ++ FL
Sbjct: 219 GTAFPGSGGNQGEVESPLPGEIRIQSDHTIARDSRTACEWQSFVNNQSKLVDDFQFIFLA 278
Query: 311 VTSIG 315
+T +G
Sbjct: 279 LTQLG 283
>pdb|1B80|A Chain A, Rec. Lignin Peroxidase H8 Oxidatively Processed
pdb|1B80|B Chain B, Rec. Lignin Peroxidase H8 Oxidatively Processed
Length = 351
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 45/185 (24%)
Query: 176 EMIKAFSSK-GLSMDDLVTLSGAHTI----GSAHCNAFNDR---FREDPKGKLT------ 221
++ K F K G++ D + +GA + G+ N F R + P G +
Sbjct: 99 KLQKPFVQKHGVTPGDFIAFAGAVALSNCPGAPQMNFFTGRAPATQPAPDGLVPEPFHTV 158
Query: 222 --LIDTSLDSSYANELMRKCPANASSSVTVNN-DP--------ETSFVFDNQYY------ 264
+I+ D+ +EL +A S VN+ DP T +FD+Q++
Sbjct: 159 DQIINRVNDAGEFDELELVXMLSAHSVAAVNDVDPTVQGLPFDSTPGIFDSQFFVETQLR 218
Query: 265 --------------RNLLAHKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLK 310
+ L + QSD + D RT + ++F N+Q ++ FL
Sbjct: 219 GTAFPGSGGNQGEVESPLPGEIRIQSDHTIARDSRTACEWQSFVNNQSKLVDDFQFIFLA 278
Query: 311 VTSIG 315
+T +G
Sbjct: 279 LTQLG 283
>pdb|1B85|A Chain A, Lignin Peroxidase
pdb|1B85|B Chain B, Lignin Peroxidase
Length = 351
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 275 QSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIG 315
QSD + D RT + ++F N+Q ++ FL +T +G
Sbjct: 243 QSDHTIARDSRTACEWQSFVNNQSKLVDDFQFIFLALTQLG 283
>pdb|1RJL|B Chain B, Structure Of The Complex Between Ospb-Ct And Bactericidal
Fab-H6831
Length = 221
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 196 GAHTIGSAHCNAFNDRFREDPKGKLTL-IDTSLDSSYAN 233
G IG H N+ N + E KGK TL +DTS ++Y +
Sbjct: 44 GLEWIGEIHPNSGNTHYNEKFKGKATLTVDTSSSTAYVD 82
>pdb|3UJT|H Chain H, Structure Of The Fab Fragment Of Ab-52, An Antibody That
Binds The O- Antigen Of Francisella Tularensis
pdb|3UJT|I Chain I, Structure Of The Fab Fragment Of Ab-52, An Antibody That
Binds The O- Antigen Of Francisella Tularensis
Length = 213
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Query: 156 RASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAHTIGSAHCNAFNDRFRED 215
R A+ + TFT + M A G G IG H N+ N + E
Sbjct: 13 RPGASVKLSCKASGYTFTSSWMHWAKQRPG---------QGLEWIGEIHPNSGNTNYNEK 63
Query: 216 PKGKLTL-IDTSLDSSYAN 233
KGK TL +DTS ++Y +
Sbjct: 64 FKGKATLTVDTSSSTAYVD 82
>pdb|1AFV|H Chain H, Hiv-1 Capsid Protein (P24) Complex With Fab25.3
pdb|1AFV|K Chain K, Hiv-1 Capsid Protein (P24) Complex With Fab25.3
Length = 220
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 196 GAHTIGSAHCNAFNDRFREDPKGKLTL-IDTSLDSSYAN 233
G IG H N+ N + E KGK TL +DTS ++Y +
Sbjct: 44 GLEWIGEIHPNSGNTNYNEKFKGKATLTVDTSSSTAYVD 82
>pdb|1LGA|A Chain A, Crystallographic Refinement Of Lignin Peroxidase At 2
Angstroms
pdb|1LGA|B Chain B, Crystallographic Refinement Of Lignin Peroxidase At 2
Angstroms
pdb|1LLP|A Chain A, Lignin Peroxidase (isozyme H2) Pi 4.15
Length = 343
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 68/184 (36%), Gaps = 45/184 (24%)
Query: 177 MIKAFSSK-GLSMDDLVTLSGAHTI----GSAHCNAFNDR---FREDPKGKLT------- 221
M K F K G++ D + +GA + G+ N F R + P G +
Sbjct: 93 MQKPFVQKHGVTPGDFIAFAGAVALSNCPGAPQMNFFTGRKPATQPAPDGLVPEPFHTVD 152
Query: 222 -LIDTSLDSSYANELMRKCPANASSSVTVNN-DP--------ETSFVFDNQYYRNLLAHK 271
+I D+ +EL +A S VN+ DP T +FD+Q++
Sbjct: 153 QIIARVNDAGEFDELELVWMLSAHSVAAVNDVDPTVQGLPFDSTPGIFDSQFFVETQFRG 212
Query: 272 GLF--------------------QSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKV 311
LF Q+D L D RT + ++F +Q ++ FL +
Sbjct: 213 TLFPGSGGNQGEVESGMAGEIRIQTDHTLARDSRTACEWQSFVGNQSKLVDDFQFIFLAL 272
Query: 312 TSIG 315
T +G
Sbjct: 273 TQLG 276
>pdb|1LY9|A Chain A, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LY9|B Chain B, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 97/265 (36%), Gaps = 46/265 (17%)
Query: 68 KLLRLLFHDCF-------------VEGCDASVLLQGNGTERSDPANASLGGFEVIDSAKR 114
K+LR++FHD G D S++ N E + PAN L D+ +
Sbjct: 48 KILRIVFHDAIGFSPALTAAGQFGGGGADGSIIAHSN-IELAFPANGGL-----TDTVEA 101
Query: 115 VLEIFCPGTVSCADIIALA-ARDSVEIAGGPAIQIPTGRRDGRASAAENVRANIVDTTFT 173
+ + VS D+I A A G P ++ TGR + ++ I T
Sbjct: 102 LRAVGINHGVSFGDLIQFATAVGMSNCPGSPRLEFLTGRSSSSQPSPPSL---IPGPGNT 158
Query: 174 MNEMIKAFSSKGLSMDDLVTLSGAHTIGSAHCNAFNDR-FREDPKGKLTLIDTSLDSSYA 232
+ ++ G S D++V L AH++ S N FR + DT Y
Sbjct: 159 VTAILDRMGDAGFSPDEVVDLLAAHSLASQE--GLNSAIFRSPLDSTPQVFDTQF---YI 213
Query: 233 NELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLAHKGLFQ--SDSVLLHDERTRKQV 290
L++ T P F L G F+ SD++L D RT +
Sbjct: 214 ETLLKG---------TTQPGPSLGFA------EELSPFPGEFRMRSDALLARDSRTACRW 258
Query: 291 ENFANDQESFFSNWGLSFLKVTSIG 315
++ + E + + K++ +G
Sbjct: 259 QSMTSSNEVMGQRYRAAMAKMSVLG 283
>pdb|1LYK|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYK|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 98/265 (36%), Gaps = 46/265 (17%)
Query: 68 KLLRLLFHDCF-------------VEGCDASVLLQGNGTERSDPANASLGGFEVIDSAKR 114
K+LR++FHD G D S++ N E + PAN L D+ +
Sbjct: 48 KILRIVFHDAIGFSPALTAAGQFGGGGADGSIIAHSN-IELAFPANGGL-----TDTVEA 101
Query: 115 VLEIFCPGTVSCADIIALA-ARDSVEIAGGPAIQIPTGRRDGRASAAENVRANIVDTTFT 173
+ + VS D+I A A G P ++ TGR + + ++ I T
Sbjct: 102 LRAVGINHGVSFGDLIQFATAVGMSNCPGSPRLEFLTGRSNSSQPSPPSL---IPGPGNT 158
Query: 174 MNEMIKAFSSKGLSMDDLVTLSGAHTIGSAHCNAFNDR-FREDPKGKLTLIDTSLDSSYA 232
+ ++ G S D++V L AH++ S N FR + DT Y
Sbjct: 159 VTAILDRMGDAGFSPDEVVDLLAAHSLASQE--GLNSAIFRSPLDSTPQVFDTQF---YI 213
Query: 233 NELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLAHKGLFQ--SDSVLLHDERTRKQV 290
L++ T P F L G F+ SD++L D RT +
Sbjct: 214 ETLLKG---------TTQPGPSLGFA------EELSPFPGEFRMRSDALLARDSRTACRW 258
Query: 291 ENFANDQESFFSNWGLSFLKVTSIG 315
++ + E + + K++ +G
Sbjct: 259 QSMTSSNEVMGQRYRAAMAKMSVLG 283
>pdb|1WYT|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Apo Form
pdb|1WYT|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Apo Form
pdb|1WYU|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|F Chain F, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|H Chain H, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYV|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|F Chain F, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|H Chain H, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
Length = 474
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 50 MVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNGTERSDPANASLGGFEV 108
M A T+ A+ + G L+ +H+ EG V+L + S+PA AS+ G++V
Sbjct: 122 MDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQV 180
>pdb|2Q7Z|A Chain A, Solution Structure Of The 30 Scr Domains Of Human
Complement Receptor 1
Length = 1931
Score = 28.5 bits (62), Expect = 5.7, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 280 LLHDERTRKQVENFANDQESFFS 302
+LH ERT++ +NF+ QE F+S
Sbjct: 262 VLHAERTQRDKDNFSPGQEVFYS 284
Score = 28.5 bits (62), Expect = 5.7, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 280 LLHDERTRKQVENFANDQESFFS 302
+LH ERT++ +NF+ QE F+S
Sbjct: 712 VLHAERTQRDKDNFSPGQEVFYS 734
>pdb|1CK6|A Chain A, Binding Mode Of Salicylhydroxamic Acid To Arthromyces
Ramosus Peroxidase
pdb|1C8I|A Chain A, Binding Mode Of Hydroxylamine To Arthromyces Ramosus
Peroxidase
pdb|1ARP|A Chain A, Crystal Structure Of The Fungal Peroxidase From
Arthromyces Ramosus At 1.9 Angstroms Resolution:
Structural Comparisons With The Lignin And Cytochrome C
Peroxidases
pdb|1ARU|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARV|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARW|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARX|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARY|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1GZA|A Chain A, Peroxidase
pdb|1GZB|A Chain A, Peroxidase
pdb|1HSR|A Chain A, Binding Mode Of Benzhydroxamic Acid To Arthromyces Ramosus
Peroxidase
pdb|2E3B|A Chain A, Crystal Structure Of The Ha-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E3A|A Chain A, Crystal Structure Of The No-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E39|A Chain A, Crystal Structure Of The Cn-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
Length = 344
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 98/265 (36%), Gaps = 46/265 (17%)
Query: 68 KLLRLLFHDCF-------------VEGCDASVLLQGNGTERSDPANASLGGFEVIDSAKR 114
K+LR++FHD G D S++ N E + PAN L D+ +
Sbjct: 49 KILRIVFHDAIGFSPALTAAGQFGGGGADGSIIAHSN-IELAFPANGGL-----TDTIEA 102
Query: 115 VLEIFCPGTVSCADIIALA-ARDSVEIAGGPAIQIPTGRRDGRASAAENVRANIVDTTFT 173
+ + VS D+I A A G P ++ TGR + + ++ I T
Sbjct: 103 LRAVGINHGVSFGDLIQFATAVGMSNCPGSPRLEFLTGRSNSSQPSPPSL---IPGPGNT 159
Query: 174 MNEMIKAFSSKGLSMDDLVTLSGAHTIGSAHCNAFNDR-FREDPKGKLTLIDTSLDSSYA 232
+ ++ G S D++V L AH++ S N FR + DT Y
Sbjct: 160 VTAILDRMGDAGFSPDEVVDLLAAHSLASQE--GLNSAIFRSPLDSTPQVFDTQF---YI 214
Query: 233 NELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLAHKGLFQ--SDSVLLHDERTRKQV 290
L++ T P F L G F+ SD++L D RT +
Sbjct: 215 ETLLKG---------TTQPGPSLGFA------EELSPFPGEFRMRSDALLARDSRTACRW 259
Query: 291 ENFANDQESFFSNWGLSFLKVTSIG 315
++ + E + + K++ +G
Sbjct: 260 QSMTSSNEVMGQRYRAAMAKMSVLG 284
>pdb|4I77|Z Chain Z, Lebrikizumab Fab Bound To Il-13
Length = 112
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 103 LGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDS-VEIA 141
+ G I+ +R+L FCP VS +L RD+ +E+A
Sbjct: 53 VSGCSAIEKTQRMLSGFCPHKVSAGQFSSLHVRDTKIEVA 92
>pdb|1IJZ|A Chain A, Solution Structure Of Human Il-13
pdb|1IK0|A Chain A, Solution Structure Of Human Il-13
pdb|3G6D|A Chain A, Crystal Structure Of The Complex Between Cnto607 Fab And
Il-13
pdb|3L5W|I Chain I, Crystal Structure Of The Complex Between Il-13 And C836
Fab
pdb|3L5W|J Chain J, Crystal Structure Of The Complex Between Il-13 And C836
Fab
pdb|3L5X|A Chain A, Crystal Structure Of The Complex Between Il-13 And H2l6
Fab
pdb|3L5Y|A Chain A, Crystal Structure Of The Complex Between Il-13 And M1295
Fab
Length = 113
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 103 LGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDS-VEIA 141
+ G I+ +R+L FCP VS +L RD+ +E+A
Sbjct: 54 VSGCSAIEKTQRMLSGFCPHKVSAGQFSSLHVRDTKIEVA 93
>pdb|1GA3|A Chain A, Nmr Structure Of Interleukin-13
Length = 113
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 103 LGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDS-VEIA 141
+ G I+ +R+L FCP VS +L RD+ +E+A
Sbjct: 54 VSGCSAIEKTQRMLSGFCPHKVSAGQFSSLHVRDTKIEVA 93
>pdb|3BPO|A Chain A, Crystal Structure Of The Il13-Il4r-Il13ra Ternary Complex
Length = 127
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 102 SLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDS-VEIA 141
++ G I+ +R+L FCP VS +L RD+ +E+A
Sbjct: 54 NVSGCSAIEKTQRMLSGFCPHKVSAGQFSSLHVRDTKIEVA 94
>pdb|1MN1|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant D179n
Length = 357
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 108/264 (40%), Gaps = 38/264 (14%)
Query: 68 KLLRLLFHDCFV----------EGCDASVLLQGNGTERSDPANASLGGFEVIDSAKRVLE 117
+++RL FHD G D S+LL +P ++ G + DS ++
Sbjct: 39 EVIRLTFHDAIAISRSQGPKAGGGADGSMLL----FPTVEPNFSANNGID--DSVNNLIP 92
Query: 118 IFCP-GTVSCADIIALAARDSVE-IAGGPAIQIPTGRRDGRASAAENVRANIVDTTFTMN 175
T+S AD++ A ++ G P ++ GR + +A + + I + ++
Sbjct: 93 FMQKHNTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGL---IPEPQDSVT 149
Query: 176 EMIKAFS-SKGLSMDDLVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANE 234
++++ F + G + ++V+L +H++ A N + P + D+ E
Sbjct: 150 KILQRFEDAGGFTPFEVVSLLASHSV--ARANKVDQTIDAAPFDSTPF---TFDTQVFLE 204
Query: 235 LMRKC---PANASSSVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVE 291
++ K P +A+++ V + D R QSD L HD RT +
Sbjct: 205 VLLKGVGFPGSANNTGEVASPLPLGSGSDTGEMR--------LQSDFALAHDPRTACIWQ 256
Query: 292 NFANDQESFFSNWGLSFLKVTSIG 315
F N+Q +++ + K+ +G
Sbjct: 257 GFVNEQAFMAASFRAAMSKLAVLG 280
>pdb|1MN2|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant E35q,
D179n
Length = 357
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 108/264 (40%), Gaps = 38/264 (14%)
Query: 68 KLLRLLFHDCFV----------EGCDASVLLQGNGTERSDPANASLGGFEVIDSAKRVLE 117
+++RL FHD G D S+LL +P ++ G + DS ++
Sbjct: 39 EVIRLTFHDAIAISRSQGPKAGGGADGSMLL----FPTVEPNFSANNGID--DSVNNLIP 92
Query: 118 IFCP-GTVSCADIIALAARDSVE-IAGGPAIQIPTGRRDGRASAAENVRANIVDTTFTMN 175
T+S AD++ A ++ G P ++ GR + +A + + I + ++
Sbjct: 93 FMQKHNTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGL---IPEPQDSVT 149
Query: 176 EMIKAFS-SKGLSMDDLVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANE 234
++++ F + G + ++V+L +H++ A N + P + D+ E
Sbjct: 150 KILQRFEDAGGFTPFEVVSLLASHSV--ARANKVDQTIDAAPFDSTPF---TFDTQVFLE 204
Query: 235 LMRKC---PANASSSVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVE 291
++ K P +A+++ V + D R QSD L HD RT +
Sbjct: 205 VLLKGVGFPGSANNTGEVASPLPLGSGSDTGEMR--------LQSDFALAHDPRTACIWQ 256
Query: 292 NFANDQESFFSNWGLSFLKVTSIG 315
F N+Q +++ + K+ +G
Sbjct: 257 GFVNEQAFMAASFRAAMSKLAVLG 280
>pdb|3LB6|A Chain A, The Structure Of Il-13 In Complex With Il-13ralpha2
Length = 132
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 105 GFEVIDSAKRVLEIFCPGTVSCADIIALAARDS-VEIA 141
G I+ +R+L FCP VS +L RD+ +E+A
Sbjct: 75 GCSAIEKTQRMLSGFCPHKVSAGQFSSLHVRDTKIEVA 112
>pdb|3LB6|B Chain B, The Structure Of Il-13 In Complex With Il-13ralpha2
Length = 132
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 105 GFEVIDSAKRVLEIFCPGTVSCADIIALAARDS-VEIA 141
G I+ +R+L FCP VS +L RD+ +E+A
Sbjct: 75 GCSAIEKTQRMLSGFCPHKVSAGQFSSLHVRDTXIEVA 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,065,180
Number of Sequences: 62578
Number of extensions: 343087
Number of successful extensions: 972
Number of sequences better than 100.0: 130
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 771
Number of HSP's gapped (non-prelim): 139
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)