Query 019972
Match_columns 333
No_of_seqs 179 out of 1515
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:00:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 1E-108 3E-113 788.6 25.6 310 20-332 9-324 (324)
2 cd00693 secretory_peroxidase H 100.0 1E-100 3E-105 731.0 25.0 295 34-331 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 2E-72 4.4E-77 520.2 9.5 228 51-296 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 1.3E-69 2.7E-74 513.0 21.4 231 49-329 15-257 (289)
5 cd00691 ascorbate_peroxidase A 100.0 1.1E-66 2.5E-71 487.3 19.6 227 46-318 11-252 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 1.3E-65 2.7E-70 478.9 21.3 230 38-317 4-248 (250)
7 cd00692 ligninase Ligninase an 100.0 9E-65 1.9E-69 487.8 20.5 237 47-333 16-288 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 2E-63 4.3E-68 463.6 21.3 220 48-317 17-248 (251)
9 cd00314 plant_peroxidase_like 100.0 1E-59 2.2E-64 441.1 17.4 223 50-313 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 8E-56 1.7E-60 432.4 18.8 258 49-322 45-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 3.5E-53 7.5E-58 437.2 20.5 256 49-320 55-406 (716)
12 cd08201 plant_peroxidase_like_ 100.0 1.8E-50 3.9E-55 376.5 12.8 219 51-313 27-264 (264)
13 PRK15061 catalase/hydroperoxid 100.0 2.1E-49 4.5E-54 407.2 19.9 258 49-322 57-414 (726)
14 cd08200 catalase_peroxidase_2 100.0 8.3E-39 1.8E-43 301.7 17.4 219 53-315 17-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 8.6E-34 1.9E-38 293.5 16.9 220 50-316 429-710 (716)
16 PRK15061 catalase/hydroperoxid 100.0 2.2E-33 4.8E-38 289.1 18.2 220 53-316 442-722 (726)
17 COG0376 KatG Catalase (peroxid 100.0 1.3E-28 2.8E-33 243.9 16.1 250 50-315 71-416 (730)
18 COG0376 KatG Catalase (peroxid 99.4 1.6E-12 3.4E-17 130.2 15.1 214 54-315 453-725 (730)
19 PTZ00411 transaldolase-like pr 69.2 16 0.00035 36.0 7.1 66 124-189 161-231 (333)
20 PRK05269 transaldolase B; Prov 59.0 26 0.00056 34.4 6.4 68 124-191 151-223 (318)
21 PRK12346 transaldolase A; Prov 57.6 25 0.00054 34.5 6.0 66 123-189 149-220 (316)
22 PF11895 DUF3415: Domain of un 53.2 12 0.00025 29.4 2.3 19 299-317 2-20 (80)
23 TIGR00874 talAB transaldolase. 52.6 49 0.0011 32.5 7.1 147 130-302 155-311 (317)
24 PRK12309 transaldolase/EF-hand 45.8 1.1E+02 0.0024 30.9 8.5 65 124-189 155-225 (391)
25 KOG0400 40S ribosomal protein 45.5 16 0.00034 31.4 2.1 33 172-204 31-64 (151)
26 PLN02161 beta-amylase 24.5 90 0.0019 32.7 4.0 34 289-326 234-272 (531)
27 PF15176 LRR19-TM: Leucine-ric 22.6 43 0.00093 27.5 1.0 28 1-28 6-35 (102)
28 PRK05264 transcriptional repre 21.2 1E+02 0.0022 25.0 2.8 45 279-328 35-81 (105)
29 cd00490 Met_repressor_MetJ Met 20.9 1E+02 0.0022 24.8 2.8 45 279-328 34-80 (103)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.3e-108 Score=788.59 Aligned_cols=310 Identities=42% Similarity=0.668 Sum_probs=289.0
Q ss_pred HHHHHHhhc-ccCCCCCCcccccccChhHHHHHHHHHHhhhhcCCCchhhHHHHhhhcccccCCCceeecCCCCCCCCCc
Q 019972 20 VFVLFRLAA-SPCCASLSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNGTERSDP 98 (333)
Q Consensus 20 ~~~~~~~~~-~~~~~~l~~~fY~~sCP~~e~iVr~~v~~~~~~d~~~aa~llRL~FHDcfv~GcDgSill~~~~~E~~~~ 98 (333)
.+++++.++ ...+++|+++||++|||++|+||+++|++++.+||+++|++|||+||||||+||||||||+++..||+++
T Consensus 9 ~~~~~~~~~~~~~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~~~Ek~a~ 88 (324)
T PLN03030 9 FFLLAMMATTLVQGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGSNTEKTAL 88 (324)
T ss_pred HHHHHHHhcccchhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCCcccccCC
Confidence 333333333 3345679999999999999999999999999999999999999999999999999999999766899999
Q ss_pred CCCCCchhHHHHHHHHHHHhhCCCCCCHHHHHHHhhHHHHHHcCCCcccCCCCCCCCCCccccccccCCCCCCCCHHHHH
Q 019972 99 ANASLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRANIVDTTFTMNEMI 178 (333)
Q Consensus 99 ~N~~l~g~~~I~~iK~~le~~cp~~VScADilalAar~aV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~ 178 (333)
+|.+|+||++|+.||++||++||++||||||||+||||||+++|||.|+|++||||+++|...++. +||+|+.++++|+
T Consensus 89 ~N~~l~Gf~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~ 167 (324)
T PLN03030 89 PNLLLRGYDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQK 167 (324)
T ss_pred CCcCcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998877664 8999999999999
Q ss_pred HHHHhCCCCCCCceeeeccccccccccccccccccCCCCCCCc-CCCCcCCHHHHHHHhhhCCCCCCCCccccCCCCCcc
Q 019972 179 KAFSSKGLSMDDLVTLSGAHTIGSAHCNAFNDRFREDPKGKLT-LIDTSLDSSYANELMRKCPANASSSVTVNNDPETSF 257 (333)
Q Consensus 179 ~~F~~~Gl~~~dlVaLsGaHTiG~~hc~~f~~Rl~~~nf~g~~-~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~Tp~ 257 (333)
+.|+++||+.+|||+||||||||++||.+|.+|| |||.+++ .+||+||+.|+.+||+.||..++.+..+++|+.||.
T Consensus 168 ~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rl--ynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~ 245 (324)
T PLN03030 168 QKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRL--YNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSN 245 (324)
T ss_pred HHHHHcCCCHHHheeeeeccccceeeeecccccc--ccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCc
Confidence 9999999999999999999999999999999999 9998875 479999999999999999963333346889999999
Q ss_pred ccchHHHHHhhhCcccccchhhhccChhhHHHHHHhhhCH----HHHHHHHHHHHHHHhcCCCCCCCCCcccccccCCC
Q 019972 258 VFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQ----ESFFSNWGLSFLKVTSIGVKTEDEGEIRQTCSMTN 332 (333)
Q Consensus 258 ~FDN~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~yA~~~----~~F~~~Fa~Am~Km~~lgv~tg~~GeIR~~C~~~N 332 (333)
+|||+||+||+.++|+|+|||+|++|++|+.+|++||.|+ +.|+++|++||+|||+|+|+||.+||||++|+++|
T Consensus 246 ~FDn~Yy~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 246 RFDASFFSNLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred ccccHHHHHHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 9999999999999999999999999999999999999875 59999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.4e-100 Score=731.03 Aligned_cols=295 Identities=50% Similarity=0.864 Sum_probs=284.5
Q ss_pred CCCcccccccChhHHHHHHHHHHhhhhcCCCchhhHHHHhhhcccccCCCceeecCCCC---CCCCCcCCCCCchhHHHH
Q 019972 34 SLSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNG---TERSDPANASLGGFEVID 110 (333)
Q Consensus 34 ~l~~~fY~~sCP~~e~iVr~~v~~~~~~d~~~aa~llRL~FHDcfv~GcDgSill~~~~---~E~~~~~N~~l~g~~~I~ 110 (333)
||+++||++|||++|+||+++|++.+.+|++++|++|||+||||||+||||||||+++. +|+++++|.+|+||++|+
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~~l~g~~~i~ 80 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNLSLRGFDVID 80 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCCCcchhHHHH
Confidence 69999999999999999999999999999999999999999999999999999999753 799999999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHhhHHHHHHcCCCcccCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHhCCCCCCC
Q 019972 111 SAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD 190 (333)
Q Consensus 111 ~iK~~le~~cp~~VScADilalAar~aV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d 190 (333)
.||++||+.||++|||||||+||||+||+++|||.|+|++||+|+.++.+..+ +.||.|+.+++++++.|+++||+++|
T Consensus 81 ~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~~d 159 (298)
T cd00693 81 DIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTVTD 159 (298)
T ss_pred HHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCCCHHH
Confidence 99999999999999999999999999999999999999999999998876555 78999999999999999999999999
Q ss_pred ceeeeccccccccccccccccccCCCCCCCcCCCCcCCHHHHHHHhhhCCCCCCCCccccCCCCCccccchHHHHHhhhC
Q 019972 191 LVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLAH 270 (333)
Q Consensus 191 lVaLsGaHTiG~~hc~~f~~Rl~~~nf~g~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~Tp~~FDN~Yy~~l~~~ 270 (333)
||||+||||||++||.+|.+|| |||+|++.+||+||+.|+..|++.||...+.+..+++|+.||.+|||+||++|+.+
T Consensus 160 ~VaL~GaHTiG~~hc~~f~~Rl--~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~ 237 (298)
T cd00693 160 LVALSGAHTIGRAHCSSFSDRL--YNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAG 237 (298)
T ss_pred heeecccceeeeeecccccccc--cCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHHhc
Confidence 9999999999999999999999 99999988999999999999999999755455678999999999999999999999
Q ss_pred cccccchhhhccChhhHHHHHHhhhCHHHHHHHHHHHHHHHhcCCCCCCCCCcccccccCC
Q 019972 271 KGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQTCSMT 331 (333)
Q Consensus 271 ~glL~SD~~L~~d~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~lgv~tg~~GeIR~~C~~~ 331 (333)
+|+|+|||+|+.|++|+++|++||.||+.|+++|++||+||++|||+||.+||||++|+++
T Consensus 238 ~glL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 238 RGLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred ccCccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 9999999999999999999999999999999999999999999999999999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=2e-72 Score=520.25 Aligned_cols=228 Identities=50% Similarity=0.841 Sum_probs=209.6
Q ss_pred HHHHHHhhhhcCCCchhhHHHHhhhcccc-cCCCceeecCCCCCCCCCcCCCCCc-hhHHHHHHHHHHHhhCCCCCCHHH
Q 019972 51 VANTVRSASSFDRTIPGKLLRLLFHDCFV-EGCDASVLLQGNGTERSDPANASLG-GFEVIDSAKRVLEIFCPGTVSCAD 128 (333)
Q Consensus 51 Vr~~v~~~~~~d~~~aa~llRL~FHDcfv-~GcDgSill~~~~~E~~~~~N~~l~-g~~~I~~iK~~le~~cp~~VScAD 128 (333)
||++|++++.++++++|++|||+|||||+ +|||||||+.. .|+++++|.+|+ ++++|+.||+++|++||++|||||
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~~--~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS~AD 78 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLFS--AEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVSCAD 78 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGST--TGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-HHH
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceeccc--cccccccccCcceeeechhhHHhhhcccccCCCCHHH
Confidence 79999999999999999999999999999 99999999944 799999999997 999999999999999999999999
Q ss_pred HHHHhhHHHHHHcCCCcccCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHhCCCCCCCceeeeccccccccccccc
Q 019972 129 IIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAHTIGSAHCNAF 208 (333)
Q Consensus 129 ilalAar~aV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHTiG~~hc~~f 208 (333)
||+||+|+||+.+|||.|+|++||+|+.++...++ .+||.|+.++++|++.|+++|||++|||||+||||||++||.+|
T Consensus 79 iialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c~~f 157 (230)
T PF00141_consen 79 IIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHCSSF 157 (230)
T ss_dssp HHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESGGCT
T ss_pred HHHHHhhhccccccccccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcceecccccccceeccc
Confidence 99999999999999999999999999999988777 78999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCcCCCCcCCHHHHHHHhhhCCCCCCCCccccCCCCCccccchHHHHHhhhCcccccchhhhccChhhHH
Q 019972 209 NDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRK 288 (333)
Q Consensus 209 ~~Rl~~~nf~g~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~Tp~~FDN~Yy~~l~~~~glL~SD~~L~~d~~t~~ 288 (333)
. || | | .+||+||+.|+.. .| ..++. ..+++| ||.+|||+||++|++++|+|+||++|++|++|+.
T Consensus 158 ~-rl--~-~----~~dp~~d~~~~~~---~C-~~~~~-~~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~t~~ 222 (230)
T PF00141_consen 158 S-RL--Y-F----PPDPTMDPGYAGQ---NC-NSGGD-NGVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDPETRP 222 (230)
T ss_dssp G-GT--S-C----SSGTTSTHHHHHH---SS-STSGC-TCEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHSTTHHH
T ss_pred c-cc--c-c----cccccccccccee---cc-CCCcc-cccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCHHHHH
Confidence 9 99 7 4 5799999999987 99 33322 377888 9999999999999999999999999999999999
Q ss_pred HHHHhhhC
Q 019972 289 QVENFAND 296 (333)
Q Consensus 289 ~V~~yA~~ 296 (333)
+|++||+|
T Consensus 223 ~V~~yA~d 230 (230)
T PF00141_consen 223 IVERYAQD 230 (230)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhcC
Confidence 99999976
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=1.3e-69 Score=513.03 Aligned_cols=231 Identities=29% Similarity=0.431 Sum_probs=210.0
Q ss_pred HHHHHHHHhhhhcCCCchhhHHHHhhhccc-------ccCCCceeecCCCCCCCCCcCCCCC-chhHHHHHHHHHHHhhC
Q 019972 49 FMVANTVRSASSFDRTIPGKLLRLLFHDCF-------VEGCDASVLLQGNGTERSDPANASL-GGFEVIDSAKRVLEIFC 120 (333)
Q Consensus 49 ~iVr~~v~~~~~~d~~~aa~llRL~FHDcf-------v~GcDgSill~~~~~E~~~~~N~~l-~g~~~I~~iK~~le~~c 120 (333)
+.++++|. .+.+||.++|.+|||+||||| ++||||||++. .|+++++|.+| +||++|+.||+++
T Consensus 15 ~~~~~~~~-~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~---~E~~~~~N~gL~~g~~vid~iK~~~---- 86 (289)
T PLN02608 15 EKARRDLR-ALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE---EEYSHGANNGLKIAIDLCEPVKAKH---- 86 (289)
T ss_pred HHHHHHHH-HHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc---cccCCccccchHHHHHHHHHHHHHc----
Confidence 35566664 477899999999999999999 99999999996 79999999999 6999999999986
Q ss_pred CCCCCHHHHHHHhhHHHHHHcCCCcccCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHhCCCCCCCceeeeccccc
Q 019972 121 PGTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAHTI 200 (333)
Q Consensus 121 p~~VScADilalAar~aV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHTi 200 (333)
++|||||||+||||+||+.+|||.|+|++||+|++++. ++++||+|+.+++++++.|+++||+++|||+|+|||||
T Consensus 87 -~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~---~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAHTi 162 (289)
T PLN02608 87 -PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACP---EEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGHTL 162 (289)
T ss_pred -CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCC---ccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcccccc
Confidence 38999999999999999999999999999999999884 45689999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCCCCcCCCCcCCHHHHHHHhhhCCCCCCCCccccCCCCCccccchHHHHHhhhC--ccc--ccc
Q 019972 201 GSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLAH--KGL--FQS 276 (333)
Q Consensus 201 G~~hc~~f~~Rl~~~nf~g~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~Tp~~FDN~Yy~~l~~~--~gl--L~S 276 (333)
|++||. |+ +|.|. +..||.+|||+||++++.+ +|+ |+|
T Consensus 163 G~ahc~----r~---g~~g~-------------------------------~~~Tp~~FDN~Yy~~ll~~~~~gll~L~S 204 (289)
T PLN02608 163 GRAHPE----RS---GFDGP-------------------------------WTKEPLKFDNSYFVELLKGESEGLLKLPT 204 (289)
T ss_pred cccccc----CC---CCCCC-------------------------------CCCCCCccChHHHHHHHcCCcCCcccccc
Confidence 999994 54 33220 1268999999999999999 788 799
Q ss_pred hhhhccChhhHHHHHHhhhCHHHHHHHHHHHHHHHhcCCCCCCCCCccccccc
Q 019972 277 DSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQTCS 329 (333)
Q Consensus 277 D~~L~~d~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~lgv~tg~~GeIR~~C~ 329 (333)
|++|+.|++|+.+|+.||.||+.|+++|++||+||++|||+||.+||+.+.-+
T Consensus 205 D~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~~ 257 (289)
T PLN02608 205 DKALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKSTS 257 (289)
T ss_pred CHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccCc
Confidence 99999999999999999999999999999999999999999999999987543
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.1e-66 Score=487.34 Aligned_cols=227 Identities=27% Similarity=0.419 Sum_probs=205.8
Q ss_pred hHHHHHHHHHHhhhhcCCCchhhHHHHhhhcccccCCCceeecCCCC------CCCCCcCCCCC-chhHHHHHHHHHHHh
Q 019972 46 SAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNG------TERSDPANASL-GGFEVIDSAKRVLEI 118 (333)
Q Consensus 46 ~~e~iVr~~v~~~~~~d~~~aa~llRL~FHDcfv~GcDgSill~~~~------~E~~~~~N~~l-~g~~~I~~iK~~le~ 118 (333)
..++||+++|++.+. +++++|++|||+|||||+ ||+|+++++.. +|+++++|.+| +||++|++||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~-- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY-- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc--
Confidence 457899999999999 999999999999999984 66666554321 59999999999 8999999999876
Q ss_pred hCCCCCCHHHHHHHhhHHHHHHcCCCcccCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHhCCCCCCCceeeeccc
Q 019972 119 FCPGTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAH 198 (333)
Q Consensus 119 ~cp~~VScADilalAar~aV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaH 198 (333)
| +|||||||+||||+||+.+|||.|+|++||+|+.++....++.+||.|+.+++++++.|+++||+++|||+|+|||
T Consensus 86 --~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGaH 162 (253)
T cd00691 86 --P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGAH 162 (253)
T ss_pred --C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcccc
Confidence 4 8999999999999999999999999999999999998777788999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCCCCcCCCCcCCHHHHHHHhhhCCCCCCCCccccCCCCCccccchHHHHHhhhCcc------
Q 019972 199 TIGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLAHKG------ 272 (333)
Q Consensus 199 TiG~~hc~~f~~Rl~~~nf~g~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~Tp~~FDN~Yy~~l~~~~g------ 272 (333)
|||++||.. ++|.|+ |..||.+|||+||++|+.++|
T Consensus 163 TiG~a~c~~-------~~~~g~-------------------------------~~~tp~~FDn~Yy~~ll~~~g~~~~~~ 204 (253)
T cd00691 163 TLGRCHKER-------SGYDGP-------------------------------WTKNPLKFDNSYFKELLEEDWKLPTPG 204 (253)
T ss_pred eeecccccC-------CCCCCC-------------------------------CCCCCCcccHHHHHHHhcCCCccCcCc
Confidence 999999952 233221 125899999999999999999
Q ss_pred --cccchhhhccChhhHHHHHHhhhCHHHHHHHHHHHHHHHhcCCCCC
Q 019972 273 --LFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGVKT 318 (333)
Q Consensus 273 --lL~SD~~L~~d~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~lgv~t 318 (333)
+|+||++|+.|++|+.+|+.||.|+++|+++|++||+||++|||..
T Consensus 205 ~~~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~~ 252 (253)
T cd00691 205 LLMLPTDKALLEDPKFRPYVELYAKDQDAFFKDYAEAHKKLSELGVPF 252 (253)
T ss_pred ceechhhHHHHcCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999963
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=1.3e-65 Score=478.89 Aligned_cols=230 Identities=30% Similarity=0.498 Sum_probs=208.2
Q ss_pred ccccc--cChhHHHHHHHHHHhhhhcCCCchhhHHHHhhh-----ccccc--CCCceeecCCCCCCCCCcCCCCC-chhH
Q 019972 38 NFYAA--SCPSAEFMVANTVRSASSFDRTIPGKLLRLLFH-----DCFVE--GCDASVLLQGNGTERSDPANASL-GGFE 107 (333)
Q Consensus 38 ~fY~~--sCP~~e~iVr~~v~~~~~~d~~~aa~llRL~FH-----Dcfv~--GcDgSill~~~~~E~~~~~N~~l-~g~~ 107 (333)
+||.. -|+.+++.+++.+++.+ .+++++|.+|||+|| ||+++ ||||||..+ +|+++++|.+| +||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~---~E~~~~~N~gl~~~~~ 79 (250)
T PLN02364 4 NYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFD---AEQAHGANSGIHIALR 79 (250)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCcccccc---ccccCCCccCHHHHHH
Confidence 46663 38899999999999988 789999999999999 88886 999999765 69999999999 8999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHhhHHHHHHcCCCcccCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHh-CCC
Q 019972 108 VIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRANIVDTTFTMNEMIKAFSS-KGL 186 (333)
Q Consensus 108 ~I~~iK~~le~~cp~~VScADilalAar~aV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~-~Gl 186 (333)
+|+.||+++ ++|||||||+||||+||+.+|||.|+|++||+|++++. ++++||.|+.++++|++.|++ +||
T Consensus 80 ~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~---~~~~lP~p~~~~~~l~~~F~~~~Gl 151 (250)
T PLN02364 80 LLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPP---PEGRLPDATKGCDHLRDVFAKQMGL 151 (250)
T ss_pred HHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCccccc---ccCCCCCCCcCHHHHHHHHHHhcCC
Confidence 999999987 48999999999999999999999999999999999874 356899999999999999997 599
Q ss_pred CCCCceeeeccccccccccccccccccCCCCCCCcCCCCcCCHHHHHHHhhhCCCCCCCCccccCCCCCccccchHHHHH
Q 019972 187 SMDDLVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRN 266 (333)
Q Consensus 187 ~~~dlVaLsGaHTiG~~hc~~f~~Rl~~~nf~g~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~Tp~~FDN~Yy~~ 266 (333)
|++|||||+||||||++|| .|+ +|.|. +..||.+|||+||++
T Consensus 152 ~~~d~VaLsGaHTiG~~hc----~r~---~~~g~-------------------------------~~~tp~~fDn~Yy~~ 193 (250)
T PLN02364 152 SDKDIVALSGAHTLGRCHK----DRS---GFEGA-------------------------------WTSNPLIFDNSYFKE 193 (250)
T ss_pred CHHHheeeecceeeccccC----CCC---CCCCC-------------------------------CCCCCCccchHHHHH
Confidence 9999999999999999999 454 33321 126899999999999
Q ss_pred hhhC--ccccc--chhhhccChhhHHHHHHhhhCHHHHHHHHHHHHHHHhcCCCC
Q 019972 267 LLAH--KGLFQ--SDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGVK 317 (333)
Q Consensus 267 l~~~--~glL~--SD~~L~~d~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~lgv~ 317 (333)
|+.+ +|+|. ||++|+.|++|+.+|+.||.||+.|+++|++||+||++||+-
T Consensus 194 ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 194 LLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred HhcCCcCCCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 9999 89865 999999999999999999999999999999999999999974
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=9e-65 Score=487.75 Aligned_cols=237 Identities=26% Similarity=0.380 Sum_probs=213.5
Q ss_pred HHHHHHHHHHhhhhc---CCCchhhHHHHhhhcccc------------cCCCceeecCCCCCCCCCcCCCCCchhHHHHH
Q 019972 47 AEFMVANTVRSASSF---DRTIPGKLLRLLFHDCFV------------EGCDASVLLQGNGTERSDPANASLGGFEVIDS 111 (333)
Q Consensus 47 ~e~iVr~~v~~~~~~---d~~~aa~llRL~FHDcfv------------~GcDgSill~~~~~E~~~~~N~~l~g~~~I~~ 111 (333)
+|..|+++|++.+.. ....|+.+|||+||||++ +||||||||+.+ .|+++++|.+|+ ++|+.
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~-~E~~~~~N~gL~--~vvd~ 92 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD-IETAFHANIGLD--EIVEA 92 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc-ccccCCCCCCHH--HHHHH
Confidence 588999999999984 456788899999999996 899999999854 699999999998 99999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHhhHHHHHH-cCCCcccCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHhCCCCCCC
Q 019972 112 AKRVLEIFCPGTVSCADIIALAARDSVEI-AGGPAIQIPTGRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD 190 (333)
Q Consensus 112 iK~~le~~cp~~VScADilalAar~aV~~-~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d 190 (333)
||..+|+.| |||||||+||||+||+. .|||.|+|++||+|++++. ++++||.|+.++++|++.|+++||+++|
T Consensus 93 lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~---~~g~LP~p~~sv~~l~~~F~~~Gf~~~E 166 (328)
T cd00692 93 LRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPA---PDGLVPEPFDSVDKILARFADAGFSPDE 166 (328)
T ss_pred HHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 999999998 99999999999999996 5999999999999999884 4568999999999999999999999999
Q ss_pred ceeeeccccccccccccccccccCCCCCCCcCCCCcCCHHHHHHHhhhCCCCCCCCccccCCCCCccccchHHHHHhh-h
Q 019972 191 LVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLL-A 269 (333)
Q Consensus 191 lVaLsGaHTiG~~hc~~f~~Rl~~~nf~g~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~Tp~~FDN~Yy~~l~-~ 269 (333)
||+|+||||||++|. .||+++. .++| .||.+|||+||+|++ .
T Consensus 167 ~VaLsGAHTiG~a~~-----------------~Dps~~g-------------------~p~D-~TP~~FDn~Yf~~ll~~ 209 (328)
T cd00692 167 LVALLAAHSVAAQDF-----------------VDPSIAG-------------------TPFD-STPGVFDTQFFIETLLK 209 (328)
T ss_pred HhhhcccccccccCC-----------------CCCCCCC-------------------CCCC-CCcchhcHHHHHHHHHc
Confidence 999999999999971 3676641 3467 699999999999987 5
Q ss_pred Ccc-------------------cccchhhhccChhhHHHHHHhhhCHHHHHHHHHHHHHHHhcCCCCCCCCCcccccccC
Q 019972 270 HKG-------------------LFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQTCSM 330 (333)
Q Consensus 270 ~~g-------------------lL~SD~~L~~d~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~lgv~tg~~GeIR~~C~~ 330 (333)
+++ +|+||++|+.|++|+.+|++||+||++|+++|++||+||++|||. ...+.+|+.
T Consensus 210 ~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~----~~~l~dcs~ 285 (328)
T cd00692 210 GTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD----NISLTDCSD 285 (328)
T ss_pred CCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC----cchhccCcc
Confidence 555 499999999999999999999999999999999999999999986 347889999
Q ss_pred CCC
Q 019972 331 TNG 333 (333)
Q Consensus 331 ~N~ 333 (333)
|++
T Consensus 286 v~p 288 (328)
T cd00692 286 VIP 288 (328)
T ss_pred cCC
Confidence 874
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=2e-63 Score=463.57 Aligned_cols=220 Identities=28% Similarity=0.445 Sum_probs=198.8
Q ss_pred HHHHHHHHHhhhhcCCCchhhHHHHhhhccc-------ccCCCceeecCCCCCCCCCcCCCCCc-hhHHHHHHHHHHHhh
Q 019972 48 EFMVANTVRSASSFDRTIPGKLLRLLFHDCF-------VEGCDASVLLQGNGTERSDPANASLG-GFEVIDSAKRVLEIF 119 (333)
Q Consensus 48 e~iVr~~v~~~~~~d~~~aa~llRL~FHDcf-------v~GcDgSill~~~~~E~~~~~N~~l~-g~~~I~~iK~~le~~ 119 (333)
.+-+++.+.+.+ ++...+|.+|||+||||. .+||||||++. .|+++++|.||+ ++++|+.||+++
T Consensus 17 ~~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~---~E~~~~~N~gL~~~~~~i~~iK~~~--- 89 (251)
T PLN02879 17 VQRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP---QELAHDANNGLDIAVRLLDPIKELF--- 89 (251)
T ss_pred HHHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh---hhccCCCcCChHHHHHHHHHHHHHc---
Confidence 345677788876 456889999999999996 48999999975 699999999997 999999999987
Q ss_pred CCCCCCHHHHHHHhhHHHHHHcCCCcccCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHhCCCCCCCceeeecccc
Q 019972 120 CPGTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAHT 199 (333)
Q Consensus 120 cp~~VScADilalAar~aV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHT 199 (333)
++|||||||+||+|+||+.+|||.|+|++||+|+..+. ++++||.|+.++++|++.|+++||+++|||||+||||
T Consensus 90 --~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~---~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaHT 164 (251)
T PLN02879 90 --PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPP---PEGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHT 164 (251)
T ss_pred --CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeecccc
Confidence 48999999999999999999999999999999999873 4678999999999999999999999999999999999
Q ss_pred ccccccccccccccCCCCCCCcCCCCcCCHHHHHHHhhhCCCCCCCCccccCCCCCccccchHHHHHhhhC--ccc--cc
Q 019972 200 IGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLAH--KGL--FQ 275 (333)
Q Consensus 200 iG~~hc~~f~~Rl~~~nf~g~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~Tp~~FDN~Yy~~l~~~--~gl--L~ 275 (333)
||++||. | ++|.|.| +.||.+|||+||++|+.+ +|+ |+
T Consensus 165 iG~ah~~----r---~g~~g~~-------------------------------d~tp~~FDN~Yy~~ll~~~~~gll~L~ 206 (251)
T PLN02879 165 LGRCHKE----R---SGFEGAW-------------------------------TPNPLIFDNSYFKEILSGEKEGLLQLP 206 (251)
T ss_pred ccccccc----c---ccCCCCC-------------------------------CCCccceeHHHHHHHHcCCcCCCccch
Confidence 9999995 4 3443321 258999999999999999 888 67
Q ss_pred chhhhccChhhHHHHHHhhhCHHHHHHHHHHHHHHHhcCCCC
Q 019972 276 SDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGVK 317 (333)
Q Consensus 276 SD~~L~~d~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~lgv~ 317 (333)
||++|+.|++|+.+|++||.||++|+++|++||+||++||+.
T Consensus 207 SD~aL~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 207 TDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred hhHHHhcCCcHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999999985
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=1e-59 Score=441.08 Aligned_cols=223 Identities=35% Similarity=0.527 Sum_probs=206.7
Q ss_pred HHHHHHHhhhhcCCCchhhHHHHhhhccccc--------CCCceeecCCCCCCCCCcCCCCC-chhHHHHHHHHHHHhhC
Q 019972 50 MVANTVRSASSFDRTIPGKLLRLLFHDCFVE--------GCDASVLLQGNGTERSDPANASL-GGFEVIDSAKRVLEIFC 120 (333)
Q Consensus 50 iVr~~v~~~~~~d~~~aa~llRL~FHDcfv~--------GcDgSill~~~~~E~~~~~N~~l-~g~~~I~~iK~~le~~c 120 (333)
.|++.|++.+.+++.+++++|||+||||++. ||||||+++ +|+++++|.+| +++++|+.||+++|+
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~---~e~~~~~N~~l~~~~~~l~~ik~~~~~-- 76 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE---PELDRPENGGLDKALRALEPIKSAYDG-- 76 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc---ccccCcccccHHHHHHHHHHHHHHcCC--
Confidence 5888999999999999999999999999996 999999998 59999999996 899999999999998
Q ss_pred CCCCCHHHHHHHhhHHHHHHc--CCCcccCCCCCCCCCCcc--ccccccCCCCCCCCHHHHHHHHHhCCCCCCCceeee-
Q 019972 121 PGTVSCADIIALAARDSVEIA--GGPAIQIPTGRRDGRASA--AENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLS- 195 (333)
Q Consensus 121 p~~VScADilalAar~aV~~~--GGP~~~v~~GR~D~~~s~--~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLs- 195 (333)
|++|||||||++|+++||+.+ |||.|+|++||+|+..+. ..++..++|.|..+++++++.|+++||+++|||||+
T Consensus 77 ~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~~ 156 (255)
T cd00314 77 GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALSA 156 (255)
T ss_pred CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhcc
Confidence 899999999999999999999 999999999999999764 345667788888899999999999999999999999
Q ss_pred ccccc-cccccccccccccCCCCCCCcCCCCcCCHHHHHHHhhhCCCCCCCCccccCCCCCccccchHHHHHhhhCc---
Q 019972 196 GAHTI-GSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLAHK--- 271 (333)
Q Consensus 196 GaHTi-G~~hc~~f~~Rl~~~nf~g~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~Tp~~FDN~Yy~~l~~~~--- 271 (333)
||||| |++||..+..|+ | .+|+.||.+|||+||++|+.++
T Consensus 157 GaHti~G~~~~~~~~~~~--------------------------~----------~~~~~tp~~fDN~yy~~l~~~~~~~ 200 (255)
T cd00314 157 GAHTLGGKNHGDLLNYEG--------------------------S----------GLWTSTPFTFDNAYFKNLLDMNWEW 200 (255)
T ss_pred CCeeccCcccCCCCCccc--------------------------C----------CCCCCCCCccchHHHHHHhcCCccc
Confidence 99999 999998776554 1 1356899999999999999998
Q ss_pred -------------ccccchhhhccChhhHHHHHHhhhCHHHHHHHHHHHHHHHhc
Q 019972 272 -------------GLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTS 313 (333)
Q Consensus 272 -------------glL~SD~~L~~d~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~ 313 (333)
++|+||++|+.|++|+.+|+.||.|+++|+++|++||+||++
T Consensus 201 ~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 201 RVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred ccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999999999984
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=8e-56 Score=432.38 Aligned_cols=258 Identities=18% Similarity=0.253 Sum_probs=228.3
Q ss_pred HHHHHHHHhhhhcC--------CCchhhHHHHhhhcccc-------cCCC-ceeecCCCCCCCCCcCCCCC-chhHHHHH
Q 019972 49 FMVANTVRSASSFD--------RTIPGKLLRLLFHDCFV-------EGCD-ASVLLQGNGTERSDPANASL-GGFEVIDS 111 (333)
Q Consensus 49 ~iVr~~v~~~~~~d--------~~~aa~llRL~FHDcfv-------~GcD-gSill~~~~~E~~~~~N~~l-~g~~~I~~ 111 (333)
+.|+++|++.+... ...+|.+|||+|||+.+ +|++ |+|.+. +|++++.|.+| ++..+++.
T Consensus 45 ~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~---pe~~~~~N~gL~~a~~~L~p 121 (409)
T cd00649 45 EALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA---PLNSWPDNVNLDKARRLLWP 121 (409)
T ss_pred HHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc---cccCcHhhhhHHHHHHHHHH
Confidence 68899999998764 47999999999999985 7996 799998 69999999999 68899999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHhhHHHHHHcCCCcccCCCCCCCCCCcccc------------------------------
Q 019972 112 AKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAE------------------------------ 161 (333)
Q Consensus 112 iK~~le~~cp~~VScADilalAar~aV~~~GGP~~~v~~GR~D~~~s~~~------------------------------ 161 (333)
||+++ |..||+||+|+||+..||+.+|||.|++.+||.|...+...
T Consensus 122 ik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~m 197 (409)
T cd00649 122 IKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQM 197 (409)
T ss_pred HHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhhhhc
Confidence 99876 45799999999999999999999999999999999754320
Q ss_pred -----cccc--CCCCCCCCHHHHHHHHHhCCCCCCCceee-eccccccccccccccccccCCCCCCCcCCCCcCCHHHHH
Q 019972 162 -----NVRA--NIVDTTFTMNEMIKAFSSKGLSMDDLVTL-SGAHTIGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYAN 233 (333)
Q Consensus 162 -----~~~~--~lP~p~~~~~~l~~~F~~~Gl~~~dlVaL-sGaHTiG~~hc~~f~~Rl~~~nf~g~~~~Dp~~d~~~~~ 233 (333)
.+++ .||+|..++.+|++.|.+||||++||||| +||||||++||.+|.+|| .+||++++.|++
T Consensus 198 gliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rl---------g~dP~~~~~~~~ 268 (409)
T cd00649 198 GLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHV---------GPEPEAAPIEQQ 268 (409)
T ss_pred cccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccC---------CCCCCcCHHHHH
Confidence 1223 79999999999999999999999999999 599999999999999998 269999999999
Q ss_pred HHh--hhCCCCCC-CCccccCC---CCCccccchHHHHHhhh------------------------------------Cc
Q 019972 234 ELM--RKCPANAS-SSVTVNND---PETSFVFDNQYYRNLLA------------------------------------HK 271 (333)
Q Consensus 234 ~L~--~~Cp~~~~-~~~~~~~d---~~Tp~~FDN~Yy~~l~~------------------------------------~~ 271 (333)
.|+ ..||...+ .+....+| +.||.+|||+||++|+. ++
T Consensus 269 gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~ 348 (409)
T cd00649 269 GLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKHAP 348 (409)
T ss_pred hhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccccCc
Confidence 995 89997432 33345677 58999999999999998 56
Q ss_pred ccccchhhhccChhhHHHHHHhhhCHHHHHHHHHHHHHHH--hcCCCCCCCCC
Q 019972 272 GLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKV--TSIGVKTEDEG 322 (333)
Q Consensus 272 glL~SD~~L~~d~~t~~~V~~yA~~~~~F~~~Fa~Am~Km--~~lgv~tg~~G 322 (333)
++|+||++|+.|++++++|++||+|+++||++|++||+|| +.+|+++..-|
T Consensus 349 gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 349 MMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred ccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 8999999999999999999999999999999999999999 68999986555
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=3.5e-53 Score=437.17 Aligned_cols=256 Identities=20% Similarity=0.241 Sum_probs=224.0
Q ss_pred HHHHHHHHhhhhcC--------CCchhhHHHHhhhcccc-------cCC-CceeecCCCCCCCCCcCCCCC-chhHHHHH
Q 019972 49 FMVANTVRSASSFD--------RTIPGKLLRLLFHDCFV-------EGC-DASVLLQGNGTERSDPANASL-GGFEVIDS 111 (333)
Q Consensus 49 ~iVr~~v~~~~~~d--------~~~aa~llRL~FHDcfv-------~Gc-DgSill~~~~~E~~~~~N~~l-~g~~~I~~ 111 (333)
+.|+++|++.+... ...+|-+|||+||++.+ +|| .|+|.+. +|++++.|.+| +++.+++.
T Consensus 55 ~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~---P~~sw~~N~~Ldka~~lL~p 131 (716)
T TIGR00198 55 AAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA---PLNSWPDNVNLDKARRLLWP 131 (716)
T ss_pred HHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc---cccCchhhhhHHHHHHHHHH
Confidence 46899999998864 47899999999999985 788 5889998 69999999999 68899999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHhhHHHHHHcCCCcccCCCCCCCCCCccc--------------------------c----
Q 019972 112 AKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAA--------------------------E---- 161 (333)
Q Consensus 112 iK~~le~~cp~~VScADilalAar~aV~~~GGP~~~v~~GR~D~~~s~~--------------------------~---- 161 (333)
||++ ||++|||||||+||+++||+.+|||.|+|.+||+|+..+.. .
T Consensus 132 Ik~k----yp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~G 207 (716)
T TIGR00198 132 IKKK----YGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAATEMG 207 (716)
T ss_pred HHHH----CCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhhhcc
Confidence 9975 89999999999999999999999999999999999943310 0
Q ss_pred ------ccccCCCCCCCCHHHHHHHHHhCCCCCCCceeee-ccccccccccccccccccCCCCCCCcCCCCcCCHHHHHH
Q 019972 162 ------NVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLS-GAHTIGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANE 234 (333)
Q Consensus 162 ------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHTiG~~hc~~f~~Rl~~~nf~g~~~~Dp~~d~~~~~~ 234 (333)
+....+|.|..++++|++.|++||||++|||||+ ||||||++||.+|.+|| ++||++++.|++.
T Consensus 208 liyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl---------g~dP~~~~~~~~g 278 (716)
T TIGR00198 208 LIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI---------GPDPEGAPIEEQG 278 (716)
T ss_pred ccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC---------CCCCCcCHHHHHH
Confidence 1122699999999999999999999999999996 99999999999999998 3799999999999
Q ss_pred HhhhCCCCC---CCCccccCC---CCCccccchHHHHHhhhC----------------------------------cccc
Q 019972 235 LMRKCPANA---SSSVTVNND---PETSFVFDNQYYRNLLAH----------------------------------KGLF 274 (333)
Q Consensus 235 L~~~Cp~~~---~~~~~~~~d---~~Tp~~FDN~Yy~~l~~~----------------------------------~glL 274 (333)
|+..||.+. ..+....+| +.||.+|||+||+||+.+ .++|
T Consensus 279 Lg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~mL 358 (716)
T TIGR00198 279 LGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPIML 358 (716)
T ss_pred hcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccccCcc
Confidence 999998532 222345666 689999999999999975 6899
Q ss_pred cchhhhccChhhHHHHHHhhhCHHHHHHHHHHHHHHHh--cCCCCCCC
Q 019972 275 QSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVT--SIGVKTED 320 (333)
Q Consensus 275 ~SD~~L~~d~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~--~lgv~tg~ 320 (333)
+||++|..|++++++|+.||.|+++|+++|++||+||+ .+|++...
T Consensus 359 ~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~~y 406 (716)
T TIGR00198 359 DADLALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKSRY 406 (716)
T ss_pred chhHHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchhhh
Confidence 99999999999999999999999999999999999998 56766543
No 12
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=1.8e-50 Score=376.51 Aligned_cols=219 Identities=22% Similarity=0.334 Sum_probs=180.2
Q ss_pred HHHHHHhhhhcCCCchhhHHHHhhhccc-------ccCCCceeecCCCCCCCC-CcCCCCCchhHHHHHHHHHHHhhCCC
Q 019972 51 VANTVRSASSFDRTIPGKLLRLLFHDCF-------VEGCDASVLLQGNGTERS-DPANASLGGFEVIDSAKRVLEIFCPG 122 (333)
Q Consensus 51 Vr~~v~~~~~~d~~~aa~llRL~FHDcf-------v~GcDgSill~~~~~E~~-~~~N~~l~g~~~I~~iK~~le~~cp~ 122 (333)
|...-..+...++++++++|||+||||| ++||||||+++...+|+. .+.|.++++|+.|+.+
T Consensus 27 v~~c~~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~~~En~G~~~n~~l~~~~~i~~~---------- 96 (264)
T cd08201 27 VTPCTDCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELDRPENIGSGFNTTLNFFVNFYSP---------- 96 (264)
T ss_pred cccccccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCCChhhccCchhhccccceeeccC----------
Confidence 3333344566889999999999999999 899999999985547776 5556678888887543
Q ss_pred CCCHHHHHHHhhHHHHHHcCCCcccCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHhCCCCCCCceeeec-ccccc
Q 019972 123 TVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSG-AHTIG 201 (333)
Q Consensus 123 ~VScADilalAar~aV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsG-aHTiG 201 (333)
+||||||||||+|+||+.+|||.|+|++||+|++++.. . .||.|+.++++|++.|++|||+++|||+||| |||||
T Consensus 97 ~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~---~-glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG 172 (264)
T cd08201 97 RSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQ---A-GVPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLG 172 (264)
T ss_pred ccCHHHHHHHHHHHHHHHcCCCeecccccCCCcccccc---c-cCCCCccCHHHHHHHHHHcCCChHHHheeecCCeeee
Confidence 69999999999999999999999999999999998753 2 4999999999999999999999999999996 99999
Q ss_pred ccccccccccccCCCCCCCcCCCCcCCHHHHHHHhhhCCCCCCCCccccCCCCCccccchHHHHHhhhCcc---------
Q 019972 202 SAHCNAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLAHKG--------- 272 (333)
Q Consensus 202 ~~hc~~f~~Rl~~~nf~g~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~Tp~~FDN~Yy~~l~~~~g--------- 272 (333)
++||..|.++. +|.. ..+...++| .||.+|||+||.+++++..
T Consensus 173 ~ahc~~f~~~~-----------~~g~----------------~~~~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~~ 224 (264)
T cd08201 173 GVHSEDFPEIV-----------PPGS----------------VPDTVLQFF-DTTIQFDNKVVTEYLSGTTNNPLVVGPN 224 (264)
T ss_pred ecccccchhhc-----------CCcc----------------ccCCCCCCC-CCccccchHHHHHHhcCCCCCceeecCC
Confidence 99999887765 1100 000123455 6999999999999998752
Q ss_pred -cccchhhhccChhhHHHHHHhhhCHHHHHHHHHHHHHHHhc
Q 019972 273 -LFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTS 313 (333)
Q Consensus 273 -lL~SD~~L~~d~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~ 313 (333)
.+.||..+++.+.-.. ++..| +++.|.+..+..+.||.+
T Consensus 225 ~~~~sd~r~f~~d~n~t-~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 225 NTTNSDLRIFSSDGNVT-MNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred CCccchhhheecCccHH-HHHhc-ChHHHHHHHHHHHHHHhC
Confidence 3689999998765543 56777 699999999999999974
No 13
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2.1e-49 Score=407.17 Aligned_cols=258 Identities=19% Similarity=0.255 Sum_probs=224.1
Q ss_pred HHHHHHHHhhhhcC--------CCchhhHHHHhhhcccc-------cCCC-ceeecCCCCCCCCCcCCCCC-chhHHHHH
Q 019972 49 FMVANTVRSASSFD--------RTIPGKLLRLLFHDCFV-------EGCD-ASVLLQGNGTERSDPANASL-GGFEVIDS 111 (333)
Q Consensus 49 ~iVr~~v~~~~~~d--------~~~aa~llRL~FHDcfv-------~GcD-gSill~~~~~E~~~~~N~~l-~g~~~I~~ 111 (333)
+.|+++|++.+... ...+|-+|||+||++.+ +||+ |+|.+. +|.+++.|.+| ++..+++.
T Consensus 57 ~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~---pe~~w~~N~gL~ka~~~L~p 133 (726)
T PRK15061 57 EALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA---PLNSWPDNVNLDKARRLLWP 133 (726)
T ss_pred HHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCc---ccccchhhhhHHHHHHHHHH
Confidence 57999999988764 47899999999999985 7996 789988 69999999999 68999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHhhHHHHHHcCCCcccCCCCCCCCCCcccc------------------------------
Q 019972 112 AKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAE------------------------------ 161 (333)
Q Consensus 112 iK~~le~~cp~~VScADilalAar~aV~~~GGP~~~v~~GR~D~~~s~~~------------------------------ 161 (333)
||+++ |..||+||+|+||+..|||.+|||.|++.+||.|...+...
T Consensus 134 ik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~~ 209 (726)
T PRK15061 134 IKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPLAAVQ 209 (726)
T ss_pred HHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccchhhhh
Confidence 99886 45799999999999999999999999999999998654321
Q ss_pred ------cc--ccCCCCCCCCHHHHHHHHHhCCCCCCCceeee-ccccccccccccccccccCCCCCCCcCCCCcCCHHHH
Q 019972 162 ------NV--RANIVDTTFTMNEMIKAFSSKGLSMDDLVTLS-GAHTIGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYA 232 (333)
Q Consensus 162 ------~~--~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHTiG~~hc~~f~~Rl~~~nf~g~~~~Dp~~d~~~~ 232 (333)
++ ...+|+|..++.+|++.|.+||||++|||||+ ||||||++||..|.+|| ++||.+++.++
T Consensus 210 mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rl---------gpdP~~a~~~~ 280 (726)
T PRK15061 210 MGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHV---------GPEPEAAPIEE 280 (726)
T ss_pred ccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccccc---------CCCCCcCHHHH
Confidence 01 12379999999999999999999999999995 99999999999999998 37999999999
Q ss_pred HHHh--hhCCCCC-CCCccccCC---CCCccccchHHHHHhhhC------------------------------------
Q 019972 233 NELM--RKCPANA-SSSVTVNND---PETSFVFDNQYYRNLLAH------------------------------------ 270 (333)
Q Consensus 233 ~~L~--~~Cp~~~-~~~~~~~~d---~~Tp~~FDN~Yy~~l~~~------------------------------------ 270 (333)
+.|. +.||.+. .++....+| +.||.+|||+||++|+.+
T Consensus 281 qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~~~ 360 (726)
T PRK15061 281 QGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKKHA 360 (726)
T ss_pred HhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCcccccccccC
Confidence 9985 8999743 233345676 689999999999999985
Q ss_pred cccccchhhhccChhhHHHHHHhhhCHHHHHHHHHHHHHHHh--cCCCCCCCCC
Q 019972 271 KGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVT--SIGVKTEDEG 322 (333)
Q Consensus 271 ~glL~SD~~L~~d~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~--~lgv~tg~~G 322 (333)
.++|+||++|..|++++++|++||+|+++|+++|++||.||+ .+|+++..-|
T Consensus 361 ~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ry~g 414 (726)
T PRK15061 361 PTMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSRYLG 414 (726)
T ss_pred cccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhhhcC
Confidence 589999999999999999999999999999999999999994 4777664433
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=8.3e-39 Score=301.71 Aligned_cols=219 Identities=19% Similarity=0.257 Sum_probs=179.7
Q ss_pred HHHHhhhhcCCCchhhHHHHhhhcccc-------cCCCce-eecCCCCCCCCCcCCCC--C-chhHHHHHHHHHHHhh-C
Q 019972 53 NTVRSASSFDRTIPGKLLRLLFHDCFV-------EGCDAS-VLLQGNGTERSDPANAS--L-GGFEVIDSAKRVLEIF-C 120 (333)
Q Consensus 53 ~~v~~~~~~d~~~aa~llRL~FHDcfv-------~GcDgS-ill~~~~~E~~~~~N~~--l-~g~~~I~~iK~~le~~-c 120 (333)
+.+++.+......++.||||+||++.+ +|++|+ |.|. +|++++.|.+ | +.+.+++.||++.... -
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~---pe~~w~~N~~~~L~~~~~~Le~ik~~~~~~~~ 93 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLA---PQKDWEVNEPEELAKVLAVLEGIQKEFNESQS 93 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCc---cccCcCccCcHHHHHHHHHHHHHHHHhccccc
Confidence 467777777778899999999999975 899999 8887 6999999998 8 5889999999987422 1
Q ss_pred C-CCCCHHHHHHHhhHHHHHHcCC-----CcccCCCCCCCCCCccccccc---cCCCCCC------------CCHHHHHH
Q 019972 121 P-GTVSCADIIALAARDSVEIAGG-----PAIQIPTGRRDGRASAAENVR---ANIVDTT------------FTMNEMIK 179 (333)
Q Consensus 121 p-~~VScADilalAar~aV~~~GG-----P~~~v~~GR~D~~~s~~~~~~---~~lP~p~------------~~~~~l~~ 179 (333)
+ ..||.||+|+||+..|||.+|| |.+++.+||.|...... +++ ..+|.+. ...+.|++
T Consensus 94 ~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~t-d~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd 172 (297)
T cd08200 94 GGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQT-DVESFEVLEPKADGFRNYLKKGYRVPPEEMLVD 172 (297)
T ss_pred CCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCC-CcccccccCCCCcccccccccCCCCCHHHHHHH
Confidence 2 2699999999999999999999 99999999999987532 222 1345332 23578999
Q ss_pred HHHhCCCCCCCceeeeccc-cccccccccccccccCCCCCCCcCCCCcCCHHHHHHHhhhCCCCCCCCccccCCCCCccc
Q 019972 180 AFSSKGLSMDDLVTLSGAH-TIGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFV 258 (333)
Q Consensus 180 ~F~~~Gl~~~dlVaLsGaH-TiG~~hc~~f~~Rl~~~nf~g~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~Tp~~ 258 (333)
.|.++|||++|||||+||| ++|+.|..+ +.|. +..+|.+
T Consensus 173 ~f~rlglsd~EmvaL~Gg~r~lG~~~~~s---------~~G~-------------------------------wT~~p~~ 212 (297)
T cd08200 173 KAQLLTLTAPEMTVLVGGLRVLGANYGGS---------KHGV-------------------------------FTDRPGV 212 (297)
T ss_pred HHHhCCCChHHHhheecchhhcccCCCCC---------CCCC-------------------------------CcCCCCc
Confidence 9999999999999999998 799876321 1111 2368999
Q ss_pred cchHHHHHhhhC--------------------cc-----cccchhhhccChhhHHHHHHhhhC--HHHHHHHHHHHHHHH
Q 019972 259 FDNQYYRNLLAH--------------------KG-----LFQSDSVLLHDERTRKQVENFAND--QESFFSNWGLSFLKV 311 (333)
Q Consensus 259 FDN~Yy~~l~~~--------------------~g-----lL~SD~~L~~d~~t~~~V~~yA~~--~~~F~~~Fa~Am~Km 311 (333)
|||.||+||++. .| .+.+|.+|.+|++.|++|+.||+| +++||+||++||.||
T Consensus 213 f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~Kl 292 (297)
T cd08200 213 LTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTKV 292 (297)
T ss_pred cccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 999999999951 01 267899999999999999999998 999999999999999
Q ss_pred hcCC
Q 019972 312 TSIG 315 (333)
Q Consensus 312 ~~lg 315 (333)
+++.
T Consensus 293 meld 296 (297)
T cd08200 293 MNLD 296 (297)
T ss_pred HhcC
Confidence 9874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=8.6e-34 Score=293.49 Aligned_cols=220 Identities=20% Similarity=0.285 Sum_probs=176.9
Q ss_pred HHHHHHHh---hhhcCCCchhhHHHHhhhcccc-------cCCCce-eecCCCCCCCCCcCC--CCC-chhHHHHHHHHH
Q 019972 50 MVANTVRS---ASSFDRTIPGKLLRLLFHDCFV-------EGCDAS-VLLQGNGTERSDPAN--ASL-GGFEVIDSAKRV 115 (333)
Q Consensus 50 iVr~~v~~---~~~~d~~~aa~llRL~FHDcfv-------~GcDgS-ill~~~~~E~~~~~N--~~l-~g~~~I~~iK~~ 115 (333)
+|+++|.+ .+......++.||||+||++.+ +|++|+ |.|. +|++++.| .+| +.+++++.||++
T Consensus 429 ~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~---pe~~w~~N~p~gL~~vl~~Le~Ik~~ 505 (716)
T TIGR00198 429 LSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE---PQKNWPVNEPTRLAKVLAVLEKIQAE 505 (716)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc---hhcCcccCCHHHHHHHHHHHHHHHHH
Confidence 34555554 3555677889999999999975 899998 8888 69999999 788 688999999998
Q ss_pred HHhhCCCCCCHHHHHHHhhHHHHHHc---CCC--cccCCCCCCCCCCccccccccCCC---CC------------CCCHH
Q 019972 116 LEIFCPGTVSCADIIALAARDSVEIA---GGP--AIQIPTGRRDGRASAAENVRANIV---DT------------TFTMN 175 (333)
Q Consensus 116 le~~cp~~VScADilalAar~aV~~~---GGP--~~~v~~GR~D~~~s~~~~~~~~lP---~p------------~~~~~ 175 (333)
... ..||.||+|+||+..|||.+ ||| .+++.+||.|...... +++...| .+ ....+
T Consensus 506 f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~~~~~~ 581 (716)
T TIGR00198 506 FAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYAVTPEE 581 (716)
T ss_pred cCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-CccccccCCCCCcccchhccccccCCHHH
Confidence 742 27999999999999999999 898 5799999999987642 3333222 11 12356
Q ss_pred HHHHHHHhCCCCCCCceeeeccc-cccccccccccccccCCCCCCCcCCCCcCCHHHHHHHhhhCCCCCCCCccccCCCC
Q 019972 176 EMIKAFSSKGLSMDDLVTLSGAH-TIGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPE 254 (333)
Q Consensus 176 ~l~~~F~~~Gl~~~dlVaLsGaH-TiG~~hc~~f~~Rl~~~nf~g~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~ 254 (333)
.|++.|.++|||++|||||+||| ++|+.|..+ +.|. ...
T Consensus 582 ~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s---------~~G~-------------------------------~T~ 621 (716)
T TIGR00198 582 LLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGS---------KHGV-------------------------------FTD 621 (716)
T ss_pred HHHHHHHhCCCChHHHHheecchhhccccCCCC---------CCCC-------------------------------CcC
Confidence 68999999999999999999985 999988421 1111 235
Q ss_pred CccccchHHHHHhhhCc--------------------c---cc--cchhhhccChhhHHHHHHhhhCH--HHHHHHHHHH
Q 019972 255 TSFVFDNQYYRNLLAHK--------------------G---LF--QSDSVLLHDERTRKQVENFANDQ--ESFFSNWGLS 307 (333)
Q Consensus 255 Tp~~FDN~Yy~~l~~~~--------------------g---lL--~SD~~L~~d~~t~~~V~~yA~~~--~~F~~~Fa~A 307 (333)
+|.+|||.||+||++.. | ++ .+|.+|..|++.|++|+.||+|+ ++|++||++|
T Consensus 622 ~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~A 701 (716)
T TIGR00198 622 RVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVAA 701 (716)
T ss_pred CCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHHHH
Confidence 79999999999998621 1 22 67999999999999999999997 8999999999
Q ss_pred HHHHhcCCC
Q 019972 308 FLKVTSIGV 316 (333)
Q Consensus 308 m~Km~~lgv 316 (333)
|.|+++++-
T Consensus 702 w~Klm~ldr 710 (716)
T TIGR00198 702 WTKVMNLDR 710 (716)
T ss_pred HHHHHhCCC
Confidence 999999874
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2.2e-33 Score=289.09 Aligned_cols=220 Identities=19% Similarity=0.260 Sum_probs=180.7
Q ss_pred HHHHhhhhcCCCchhhHHHHhhhcccc-------cCCCce-eecCCCCCCCCCcCCC--CC-chhHHHHHHHHHHHhhC-
Q 019972 53 NTVRSASSFDRTIPGKLLRLLFHDCFV-------EGCDAS-VLLQGNGTERSDPANA--SL-GGFEVIDSAKRVLEIFC- 120 (333)
Q Consensus 53 ~~v~~~~~~d~~~aa~llRL~FHDcfv-------~GcDgS-ill~~~~~E~~~~~N~--~l-~g~~~I~~iK~~le~~c- 120 (333)
..+++.+....-..+.||||+||++.+ +|++|+ |.|. +|++++.|. +| +.+++++.||++....-
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~---Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~~~~ 518 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA---PQKDWEVNEPAQLAKVLAVLEGIQAEFNAAQS 518 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc---cccCccccCHHHHHHHHHHHHHHHHHHhhccC
Confidence 467777777778899999999999975 899998 9988 699999998 78 58999999999986432
Q ss_pred -CCCCCHHHHHHHhhHHHHHHc---CC--CcccCCCCCCCCCCcccccccc---CCCCCC------------CCHHHHHH
Q 019972 121 -PGTVSCADIIALAARDSVEIA---GG--PAIQIPTGRRDGRASAAENVRA---NIVDTT------------FTMNEMIK 179 (333)
Q Consensus 121 -p~~VScADilalAar~aV~~~---GG--P~~~v~~GR~D~~~s~~~~~~~---~lP~p~------------~~~~~l~~ 179 (333)
...||.||+|+||+..|||.+ || |.+++.+||.|.+... .+++. .+|.+. ...+.|++
T Consensus 519 ~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~-td~esf~~l~P~Adgfrny~~~~~~~~~e~~L~d 597 (726)
T PRK15061 519 GGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQ-TDVESFAVLEPKADGFRNYLKKGYSVSPEELLVD 597 (726)
T ss_pred CCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCC-CCcccccccCCCCccccccccccCCCCHHHHHHH
Confidence 136999999999999999998 68 9999999999998753 23332 456543 13478999
Q ss_pred HHHhCCCCCCCceeeeccc-cccccccccccccccCCCCCCCcCCCCcCCHHHHHHHhhhCCCCCCCCccccCCCCCccc
Q 019972 180 AFSSKGLSMDDLVTLSGAH-TIGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFV 258 (333)
Q Consensus 180 ~F~~~Gl~~~dlVaLsGaH-TiG~~hc~~f~~Rl~~~nf~g~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~Tp~~ 258 (333)
.|.++|||++|||||+||| ++|+.|-.+ +.| ....+|.+
T Consensus 598 ~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S---------~~G-------------------------------~~T~~p~~ 637 (726)
T PRK15061 598 KAQLLTLTAPEMTVLVGGLRVLGANYGGS---------KHG-------------------------------VFTDRPGV 637 (726)
T ss_pred HHHhCCCChHHHhheecchhhcccCCCCC---------CCC-------------------------------CCcCCCCc
Confidence 9999999999999999997 788876321 011 12357999
Q ss_pred cchHHHHHhhhC----------c----------c---c--ccchhhhccChhhHHHHHHhhhC--HHHHHHHHHHHHHHH
Q 019972 259 FDNQYYRNLLAH----------K----------G---L--FQSDSVLLHDERTRKQVENFAND--QESFFSNWGLSFLKV 311 (333)
Q Consensus 259 FDN~Yy~~l~~~----------~----------g---l--L~SD~~L~~d~~t~~~V~~yA~~--~~~F~~~Fa~Am~Km 311 (333)
|||.||+||++- . | + +.+|.+|.+|++.|++|+.||+| +++|++||++||.|+
T Consensus 638 fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kv 717 (726)
T PRK15061 638 LTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTKV 717 (726)
T ss_pred cccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 999999999951 1 1 1 47899999999999999999998 999999999999999
Q ss_pred hcCCC
Q 019972 312 TSIGV 316 (333)
Q Consensus 312 ~~lgv 316 (333)
++++-
T Consensus 718 meldr 722 (726)
T PRK15061 718 MNLDR 722 (726)
T ss_pred HhCCC
Confidence 99874
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.3e-28 Score=243.88 Aligned_cols=250 Identities=17% Similarity=0.221 Sum_probs=195.0
Q ss_pred HHHHHHHhhhhcC--------CCchhhHHHHhhhcccc-------cCC-CceeecCCCCCCCCCcCCCCC-chhHHHHHH
Q 019972 50 MVANTVRSASSFD--------RTIPGKLLRLLFHDCFV-------EGC-DASVLLQGNGTERSDPANASL-GGFEVIDSA 112 (333)
Q Consensus 50 iVr~~v~~~~~~d--------~~~aa~llRL~FHDcfv-------~Gc-DgSill~~~~~E~~~~~N~~l-~g~~~I~~i 112 (333)
.|++.+.+..... ...+|-+|||+||-+.+ +|. .|...+. ++..+|.|.+| +++.++..|
T Consensus 71 Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRFa---PlnSWPDN~nLDKarRLLWPI 147 (730)
T COG0376 71 AVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA---PLNSWPDNANLDKARRLLWPI 147 (730)
T ss_pred HHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceecc---cccCCCcccchHHHHHHhhhH
Confidence 4666666666553 35889999999999975 344 3445544 57789999999 699999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHhhHHHHHHcCCCcccCCCCCCCCCCcccc-------------------------------
Q 019972 113 KRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAE------------------------------- 161 (333)
Q Consensus 113 K~~le~~cp~~VScADilalAar~aV~~~GGP~~~v~~GR~D~~~s~~~------------------------------- 161 (333)
|+++ +..+|+||+++|++..|++.+|++++.+..||.|-..+...
T Consensus 148 KkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMG 223 (730)
T COG0376 148 KKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMG 223 (730)
T ss_pred hHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheee
Confidence 9885 67999999999999999999999999999999998776541
Q ss_pred ------ccccCCCCCCCCHHHHHHHHHhCCCCCCCceeeec-cccccccccccccccccCCCCCCCcCCCCcCCHHHHHH
Q 019972 162 ------NVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSG-AHTIGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANE 234 (333)
Q Consensus 162 ------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsG-aHTiG~~hc~~f~~Rl~~~nf~g~~~~Dp~~d~~~~~~ 234 (333)
+-++..|+|..+..++++.|++|+++.+|.|||++ |||+|++|...-.+-+ +++|.--+--.+-
T Consensus 224 LIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~v---------g~ePe~a~ie~qG 294 (730)
T COG0376 224 LIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNV---------GPEPEAAPIEQQG 294 (730)
T ss_pred eEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhc---------CCCccccchhhhc
Confidence 11245788999999999999999999999999995 9999999965422222 3566543333333
Q ss_pred H--hhhCCCCCC-CCc---cccCCCCCccccchHHHHHhhhC-----------------------------------ccc
Q 019972 235 L--MRKCPANAS-SSV---TVNNDPETSFVFDNQYYRNLLAH-----------------------------------KGL 273 (333)
Q Consensus 235 L--~~~Cp~~~~-~~~---~~~~d~~Tp~~FDN~Yy~~l~~~-----------------------------------~gl 273 (333)
| +..|-.+.+ ++. +...+..||++|||+||.+|+.. ..+
T Consensus 295 lGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~M 374 (730)
T COG0376 295 LGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMM 374 (730)
T ss_pred cccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCcee
Confidence 3 223333222 121 23346789999999999999863 147
Q ss_pred ccchhhhccChhhHHHHHHhhhCHHHHHHHHHHHHHHHhcCC
Q 019972 274 FQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIG 315 (333)
Q Consensus 274 L~SD~~L~~d~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~lg 315 (333)
|.+|.+|.-||..+++.++|.+|++.|.+.|++||.||.+-.
T Consensus 375 lttDlaLr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 375 LTTDLALRFDPEYEKISRRFLEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred eccchhhhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999997643
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.45 E-value=1.6e-12 Score=130.22 Aligned_cols=214 Identities=20% Similarity=0.294 Sum_probs=157.1
Q ss_pred HHHhhhhcCCCchhhHHHHhhhcccc-------cCCCce-eecCCCCCCCCCcCCCC--C-chhHHHHHHHHHHHhhCCC
Q 019972 54 TVRSASSFDRTIPGKLLRLLFHDCFV-------EGCDAS-VLLQGNGTERSDPANAS--L-GGFEVIDSAKRVLEIFCPG 122 (333)
Q Consensus 54 ~v~~~~~~d~~~aa~llRL~FHDcfv-------~GcDgS-ill~~~~~E~~~~~N~~--l-~g~~~I~~iK~~le~~cp~ 122 (333)
.+++.+....-....|+-.+|-.+-+ +|.+|. |.|. +.++++.|.. | +-+.+++.|.+... .
T Consensus 453 ~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa---PqkdWevN~P~~l~kvl~~le~iq~~fn----k 525 (730)
T COG0376 453 ALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA---PQKDWEVNQPAELAKVLAVLEKIQKEFN----K 525 (730)
T ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec---ccccCCCCCHHHHHHHHHHHHHHHHHhc----C
Confidence 56777777778889999999998854 677774 7787 6899999954 4 57788888888775 4
Q ss_pred CCCHHHHHHHhhHHHHHHc---CCCc--ccCCCCCCCCCCccccccccC--C-CCC------------CCCHHHHHHHHH
Q 019972 123 TVSCADIIALAARDSVEIA---GGPA--IQIPTGRRDGRASAAENVRAN--I-VDT------------TFTMNEMIKAFS 182 (333)
Q Consensus 123 ~VScADilalAar~aV~~~---GGP~--~~v~~GR~D~~~s~~~~~~~~--l-P~p------------~~~~~~l~~~F~ 182 (333)
.||.||+|+|++..+|+.+ +|-. +++.+||.|+..... +++.. | |-. ...-.-|++.-+
T Consensus 526 kvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqt-Dv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkAq 604 (730)
T COG0376 526 KVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQT-DVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKAQ 604 (730)
T ss_pred ccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhc-chhhhhcccccchhhhhhccCCCcCCHHHHHHHHHH
Confidence 7999999999999999985 6654 577899999976533 22221 1 111 112344788888
Q ss_pred hCCCCCCCceeeeccc-cccccccccccccccCCCCCCCcCCCCcCCHHHHHHHhhhCCCCCCCCccccCCCCCccccch
Q 019972 183 SKGLSMDDLVTLSGAH-TIGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDN 261 (333)
Q Consensus 183 ~~Gl~~~dlVaLsGaH-TiG~~hc~~f~~Rl~~~nf~g~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~Tp~~FDN 261 (333)
-.+||..||++|.|+- .+|. |+.|+. ..+.- ..|..+.|
T Consensus 605 lL~LtapemtVLiGGlRvLg~-------------n~g~s~-------------------------~GVfT--~~pg~Ltn 644 (730)
T COG0376 605 LLTLTAPEMTVLIGGLRVLGA-------------NYGGSK-------------------------HGVFT--DRPGVLTN 644 (730)
T ss_pred HhccCCccceEEEcceEeecc-------------CCCCCc-------------------------cceec--cCcccccc
Confidence 8999999999999975 3443 332221 11211 35777778
Q ss_pred HHHHHhhhC----------c----------cc-----ccchhhhccChhhHHHHHHhhhC--HHHHHHHHHHHHHHHhcC
Q 019972 262 QYYRNLLAH----------K----------GL-----FQSDSVLLHDERTRKQVENFAND--QESFFSNWGLSFLKVTSI 314 (333)
Q Consensus 262 ~Yy~~l~~~----------~----------gl-----L~SD~~L~~d~~t~~~V~~yA~~--~~~F~~~Fa~Am~Km~~l 314 (333)
.||.||+.- + |- -..|..+-+++..|.+.+-||++ +++|.+||+.||.|..++
T Consensus 645 dFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn~ 724 (730)
T COG0376 645 DFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKVMNL 724 (730)
T ss_pred hhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc
Confidence 888887752 1 21 25788888899999999999975 899999999999999987
Q ss_pred C
Q 019972 315 G 315 (333)
Q Consensus 315 g 315 (333)
.
T Consensus 725 D 725 (730)
T COG0376 725 D 725 (730)
T ss_pred c
Confidence 5
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=69.23 E-value=16 Score=36.04 Aligned_cols=66 Identities=14% Similarity=0.188 Sum_probs=35.5
Q ss_pred CCHHHHHHHhhHHHHH--HcCCCcccCCCCCCCCCCccccccccCCCCC---CCCHHHHHHHHHhCCCCCC
Q 019972 124 VSCADIIALAARDSVE--IAGGPAIQIPTGRRDGRASAAENVRANIVDT---TFTMNEMIKAFSSKGLSMD 189 (333)
Q Consensus 124 VScADilalAar~aV~--~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p---~~~~~~l~~~F~~~Gl~~~ 189 (333)
|.|-=.+.+....|+. .+|-..+..+.||.+...-.........+.. -..+.++.+.|++.|+..+
T Consensus 161 I~~N~TlvFS~~QA~aaaeAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~ 231 (333)
T PTZ00411 161 IHCNLTLLFSFAQAVACAQAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTI 231 (333)
T ss_pred CceeEeEecCHHHHHHHHHcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeE
Confidence 3333333444444433 3477888999999855422111111111111 2357788889999998753
No 20
>PRK05269 transaldolase B; Provisional
Probab=59.03 E-value=26 Score=34.37 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=37.8
Q ss_pred CCHHHHHHHhhHHHHH--HcCCCcccCCCCCCCCCCccccccccC---CCCCCCCHHHHHHHHHhCCCCCCCc
Q 019972 124 VSCADIIALAARDSVE--IAGGPAIQIPTGRRDGRASAAENVRAN---IVDTTFTMNEMIKAFSSKGLSMDDL 191 (333)
Q Consensus 124 VScADilalAar~aV~--~~GGP~~~v~~GR~D~~~s~~~~~~~~---lP~p~~~~~~l~~~F~~~Gl~~~dl 191 (333)
|.|-=.+.+....|+. .+|-..+..+.||-|...-...+.... --++-..+.++.+.|++.|+..+-|
T Consensus 151 I~vn~TlvFs~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im 223 (318)
T PRK05269 151 INCNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVVM 223 (318)
T ss_pred CceeEeEecCHHHHHHHHHcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceEE
Confidence 4443333444443333 347788999999987542211000000 1112346888889999999987633
No 21
>PRK12346 transaldolase A; Provisional
Probab=57.60 E-value=25 Score=34.50 Aligned_cols=66 Identities=12% Similarity=0.050 Sum_probs=39.1
Q ss_pred CCCHHHHHHHhhHHHHH--HcCCCcccCCCCCCCCCCccccccccCCCC----CCCCHHHHHHHHHhCCCCCC
Q 019972 123 TVSCADIIALAARDSVE--IAGGPAIQIPTGRRDGRASAAENVRANIVD----TTFTMNEMIKAFSSKGLSMD 189 (333)
Q Consensus 123 ~VScADilalAar~aV~--~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~----p~~~~~~l~~~F~~~Gl~~~ 189 (333)
.|+|-=.+.+....++. .+|-..+..+.||-|-....... ...++. +-..+.++.+.|++.|+..+
T Consensus 149 GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~-~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~ 220 (316)
T PRK12346 149 GINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKP-MDPYVVEEDPGVKSVRNIYDYYKQHRYETI 220 (316)
T ss_pred CCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccc-cccccccCCChHHHHHHHHHHHHHcCCCcE
Confidence 35554445555555544 35888899999998864322111 111211 12357788889999998754
No 22
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=53.16 E-value=12 Score=29.44 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhcCCCC
Q 019972 299 SFFSNWGLSFLKVTSIGVK 317 (333)
Q Consensus 299 ~F~~~Fa~Am~Km~~lgv~ 317 (333)
+..++|..||.||+.||..
T Consensus 2 ~m~~~F~~am~KlavLG~d 20 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHD 20 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-
T ss_pred hHHHHHHHHHHHHHHhcCC
Confidence 3568999999999999763
No 23
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=52.61 E-value=49 Score=32.51 Aligned_cols=147 Identities=13% Similarity=0.159 Sum_probs=70.5
Q ss_pred HHHhhHHHH--HHcCCCcccCCCCCCCCCCccccccccCCC----CCCCCHHHHHHHHHhCCCCCCCceeeecccccccc
Q 019972 130 IALAARDSV--EIAGGPAIQIPTGRRDGRASAAENVRANIV----DTTFTMNEMIKAFSSKGLSMDDLVTLSGAHTIGSA 203 (333)
Q Consensus 130 lalAar~aV--~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP----~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHTiG~~ 203 (333)
+.+....++ ..+|-..+..+.||-|-..-..... ...+ ++-..+.++.+.|++.|+..+=|.|=. .++...
T Consensus 155 liFS~~Qa~aaa~AGa~~ISPFVgRi~dw~~~~~g~-~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASf--Rn~~qv 231 (317)
T TIGR00874 155 LLFSFVQAIACAEAKVTLISPFVGRILDWYKAATGK-KEYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASF--RNKEEI 231 (317)
T ss_pred eecCHHHHHHHHHcCCCEEEeecchHhHhhhhccCc-cccccccCchHHHHHHHHHHHHHcCCCcEEEeecc--CCHHHH
Confidence 344444433 3358888999999987632211100 0111 123467788889999998764333210 111111
Q ss_pred ccccccccccCCCCCCCcCCC-CcCCHHHHHHHhhhCCC-CC--CCCccccCCCCCccccchHHHHHhhhCcccccchhh
Q 019972 204 HCNAFNDRFREDPKGKLTLID-TSLDSSYANELMRKCPA-NA--SSSVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSV 279 (333)
Q Consensus 204 hc~~f~~Rl~~~nf~g~~~~D-p~~d~~~~~~L~~~Cp~-~~--~~~~~~~~d~~Tp~~FDN~Yy~~l~~~~glL~SD~~ 279 (333)
.. + .| .| =+++|....+|...-.. .. ........ ...|..+|...|+...+..++
T Consensus 232 ~~------l-----aG---~d~~Ti~p~ll~~L~~~~~~~~~~l~~~~~~~~-~~~~~~~~e~~fr~~~~~d~m------ 290 (317)
T TIGR00874 232 LA------L-----AG---CDRLTISPALLDELKESTGPVERKLDPESAKKV-DKQPIILDESEFRFLHNEDAM------ 290 (317)
T ss_pred HH------H-----HC---CCeEeCCHHHHHHHHhCCCCcCccCCccccccc-cccCCCCCHHHHHHHhCCCcc------
Confidence 10 1 01 11 25778888877653211 00 00000001 123456788888754443322
Q ss_pred hccChhhHHHHHHhhhCHHHHHH
Q 019972 280 LLHDERTRKQVENFANDQESFFS 302 (333)
Q Consensus 280 L~~d~~t~~~V~~yA~~~~~F~~ 302 (333)
.-.....-++.|+.|+....+
T Consensus 291 --a~ekl~~gir~F~~d~~~Le~ 311 (317)
T TIGR00874 291 --ATEKLAEGIRKFAADQEKLEK 311 (317)
T ss_pred --hHHHHHHHHHHHHHHHHHHHH
Confidence 112234456677776655443
No 24
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=45.79 E-value=1.1e+02 Score=30.95 Aligned_cols=65 Identities=12% Similarity=0.182 Sum_probs=38.2
Q ss_pred CCHHHHHHHhhHHHHH--HcCCCcccCCCCCCCCCCccccccccCCCCCC----CCHHHHHHHHHhCCCCCC
Q 019972 124 VSCADIIALAARDSVE--IAGGPAIQIPTGRRDGRASAAENVRANIVDTT----FTMNEMIKAFSSKGLSMD 189 (333)
Q Consensus 124 VScADilalAar~aV~--~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~----~~~~~l~~~F~~~Gl~~~ 189 (333)
|.|-=.+.+....|+. .+|-..+..+.||.|-..-.... ...+|... ..+.++.+.|++.|+..+
T Consensus 155 I~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g-~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~ 225 (391)
T PRK12309 155 IHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETG-RDSYPGAEDPGVQSVTQIYNYYKKFGYKTE 225 (391)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccC-CCccccccchHHHHHHHHHHHHHhcCCCcE
Confidence 4444444454444443 35888899999998774322111 11244332 247788889999998653
No 25
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=45.48 E-value=16 Score=31.42 Aligned_cols=33 Identities=30% Similarity=0.471 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHhCCCCCCCc-eeeeccccccccc
Q 019972 172 FTMNEMIKAFSSKGLSMDDL-VTLSGAHTIGSAH 204 (333)
Q Consensus 172 ~~~~~l~~~F~~~Gl~~~dl-VaLsGaHTiG~~h 204 (333)
+++.+.+-.|++|||++.++ |.|--+|-||++.
T Consensus 31 ddvkeqI~K~akKGltpsqIGviLRDshGi~q~r 64 (151)
T KOG0400|consen 31 DDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVR 64 (151)
T ss_pred HHHHHHHHHHHHcCCChhHceeeeecccCcchhh
Confidence 35666777999999999998 5566799999975
No 26
>PLN02161 beta-amylase
Probab=24.55 E-value=90 Score=32.71 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=23.6
Q ss_pred HHHHhhhCHHHHHHHHHHHHHHHh-----cCCCCCCCCCcccc
Q 019972 289 QVENFANDQESFFSNWGLSFLKVT-----SIGVKTEDEGEIRQ 326 (333)
Q Consensus 289 ~V~~yA~~~~~F~~~Fa~Am~Km~-----~lgv~tg~~GeIR~ 326 (333)
-++.|.+ |++.|...|.-+. +|.|=-|+.||.|=
T Consensus 234 plq~Y~D----fm~SFr~~F~~~~~~~I~eI~VGlGP~GELRY 272 (531)
T PLN02161 234 AVQCYED----FMLSFSTKFEPYIGNVIEEISIGLGPSGELRY 272 (531)
T ss_pred HHHHHHH----HHHHHHHHHHHHhcCceEEEEeccccCccccC
Confidence 3566764 7777777777654 55555589999984
No 27
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=22.56 E-value=43 Score=27.48 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=15.8
Q ss_pred CCCCCCCCc--cchhhHHHHHHHHHHHhhc
Q 019972 1 MSSNPGIGS--FCKANGYVLFVFVLFRLAA 28 (333)
Q Consensus 1 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 28 (333)
|.+.||.|| +++..|.|+.++++.++.+
T Consensus 6 ~~~~~~~~g~sW~~LVGVv~~al~~SlLIa 35 (102)
T PF15176_consen 6 NAPGPGEGGRSWPFLVGVVVTALVTSLLIA 35 (102)
T ss_pred cCCCCCCCCcccHhHHHHHHHHHHHHHHHH
Confidence 457777774 5555666555555443433
No 28
>PRK05264 transcriptional repressor protein MetJ; Provisional
Probab=21.24 E-value=1e+02 Score=24.95 Aligned_cols=45 Identities=33% Similarity=0.528 Sum_probs=32.4
Q ss_pred hhccChhhHHHHHHh--hhCHHHHHHHHHHHHHHHhcCCCCCCCCCcccccc
Q 019972 279 VLLHDERTRKQVENF--ANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQTC 328 (333)
Q Consensus 279 ~L~~d~~t~~~V~~y--A~~~~~F~~~Fa~Am~Km~~lgv~tg~~GeIR~~C 328 (333)
.+++|.+||+.|+.. |.|.++.-+.|--||. |..--.+..+|+.+
T Consensus 35 kiLTdERTRRQvnNLRHATNSELLCEAFLHA~T-----GQPLP~D~Dl~Kd~ 81 (105)
T PRK05264 35 KILTDERTRRQVNNLRHATNSELLCEAFLHAFT-----GQPLPDDEDLRKER 81 (105)
T ss_pred HHHhhHHHHHHHhhhhhcccHHHHHHHHHHHHc-----CCCCCChhhhhhcC
Confidence 467899999999765 7899999999999885 32223445555544
No 29
>cd00490 Met_repressor_MetJ Met Repressor, MetJ. MetJ is a bacterial regulatory protein that uses S-adenosylmethionine (SAM) as a corepressor to regulate the production of Methionine. MetJ binds arrays of two to five adjacent copies of an eight base-pair 'metbox' sequence. MetJ forms sufficiently strong interactions with the sugar-phosphate backbone to accomodate sequence variation in natural operators. However, it is very sensitive to particular base changes in the operator. MetJ exists as a homodimer.
Probab=20.88 E-value=1e+02 Score=24.76 Aligned_cols=45 Identities=33% Similarity=0.538 Sum_probs=32.5
Q ss_pred hhccChhhHHHHHHh--hhCHHHHHHHHHHHHHHHhcCCCCCCCCCcccccc
Q 019972 279 VLLHDERTRKQVENF--ANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQTC 328 (333)
Q Consensus 279 ~L~~d~~t~~~V~~y--A~~~~~F~~~Fa~Am~Km~~lgv~tg~~GeIR~~C 328 (333)
..++|.+||..|+.. |.|.+..-+.|--||. |..--.+..+|+.+
T Consensus 34 kiLTdERTRRQvnnlRHATNSELLCEAFLHAfT-----GQPLP~D~Dl~K~~ 80 (103)
T cd00490 34 KILTDERTRRQVNNLRHATNSELLCEAFLHAFT-----GQPLPDDADLRKER 80 (103)
T ss_pred HHHhhHHHHHHHhhhhhcccHHHHHHHHHHHhc-----CCCCCChhhhhhcC
Confidence 456899999999765 7799999999999885 33223445555554
Done!