Query 019973
Match_columns 333
No_of_seqs 146 out of 502
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:00:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4683 Uncharacterized conser 100.0 7.7E-61 1.7E-65 457.9 12.6 301 1-333 247-549 (549)
2 COG4299 Uncharacterized protei 100.0 6.1E-54 1.3E-58 397.8 20.1 257 2-333 112-371 (371)
3 PF06423 GWT1: GWT1; InterPro 98.4 2.7E-06 5.9E-11 73.2 10.0 116 152-270 3-132 (136)
4 PF04235 DUF418: Protein of un 97.2 0.0046 1E-07 54.0 10.9 92 179-272 11-107 (163)
5 PF07786 DUF1624: Protein of u 97.1 0.0044 9.4E-08 56.7 10.0 31 150-180 160-190 (223)
6 PF10129 OpgC_C: OpgC protein; 92.7 1.5 3.2E-05 43.6 11.7 119 153-274 188-322 (358)
7 PRK10835 hypothetical protein; 92.0 4.8 0.0001 40.1 14.4 39 231-271 276-314 (373)
8 PF01757 Acyl_transf_3: Acyltr 90.6 4 8.7E-05 37.0 11.5 21 248-270 284-304 (340)
9 PF15345 TMEM51: Transmembrane 86.5 0.55 1.2E-05 43.9 2.7 57 188-244 9-87 (233)
10 COG2311 Predicted membrane pro 85.0 22 0.00047 36.1 13.4 45 227-273 285-329 (394)
11 COG3594 NolL Fucose 4-O-acetyl 80.6 29 0.00063 34.5 12.1 58 210-274 228-286 (343)
12 COG5062 Uncharacterized membra 67.9 15 0.00032 36.8 6.4 161 151-333 266-429 (429)
13 KOG4683 Uncharacterized conser 45.9 15 0.00033 37.0 2.4 46 46-91 281-326 (549)
14 PRK05771 V-type ATP synthase s 39.6 68 0.0015 34.3 6.4 16 188-203 396-411 (646)
15 cd08764 Cyt_b561_CG1275_like N 30.0 1.8E+02 0.004 27.0 6.7 28 150-177 169-196 (214)
16 KOG0721 Molecular chaperone (D 29.0 47 0.001 31.2 2.6 49 209-258 62-110 (230)
17 PF10658 DUF2484: Protein of u 28.6 1.1E+02 0.0023 24.1 4.1 35 192-229 8-42 (77)
18 PF11255 DUF3054: Protein of u 27.0 3.7E+02 0.008 22.3 7.5 75 150-232 24-105 (112)
19 PRK03854 opgC glucans biosynth 26.8 4.1E+02 0.0088 26.0 9.1 18 247-264 303-320 (375)
20 TIGR02230 ATPase_gene1 F0F1-AT 25.6 2.4E+02 0.0052 23.2 5.9 29 150-178 39-69 (100)
21 PRK11089 PTS system glucose-sp 25.4 5.9E+02 0.013 26.6 10.2 40 165-204 260-299 (477)
22 PLN02810 carbon-monoxide oxyge 24.3 3.6E+02 0.0078 25.5 7.6 26 3-28 81-106 (231)
23 PF05628 Borrelia_P13: Borreli 23.9 1.7E+02 0.0037 25.3 5.0 77 153-230 8-84 (135)
24 TIGR00924 yjdL_sub1_fam amino 22.1 6.1E+02 0.013 25.6 9.6 107 152-264 313-430 (475)
No 1
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.7e-61 Score=457.89 Aligned_cols=301 Identities=33% Similarity=0.624 Sum_probs=248.0
Q ss_pred CcccccchHHHHHHHHHHHHHHHHhcCCCCccCccc--chhhhhhhHHHHHHHHHHHHHHHHHHHhcccCCCcccccCCC
Q 019973 1 MIRLCGVLQRIALSYLLVSLVEIFTKDVQDKDQSVG--RFSIFRLYCWHWLMAACVLVVYLALLYGTYVPDWQFTIINKD 78 (333)
Q Consensus 1 ~iRi~GVLQRIal~Y~~~all~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ll~~y~~l~~~~~vp~~~~~~~~~g 78 (333)
++|+||+|||+|++|+++|++..++.+... +|..- .++..........+-.+++..|..++|+..+|+||.+|++|+
T Consensus 247 ~lR~mGILQr~~~ayLVvAi~~~~~~~~~~-~~~S~~R~V~~~~L~~~~~~~~~~~V~~~~~~~~~~~~~~~~r~~~~~~ 325 (549)
T KOG4683|consen 247 QLRIMGILQRFGVAYLVVAILHTLCCRPIS-PQRSWQRAVHDVCLFSGELAVLLALVATYLGLTFGLRVPGCPRGYLGPG 325 (549)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhhhccCCCc-cccchhhhhhHHHHHHHHHHHHHHhhhhhhceecccccCCCCcccccCC
Confidence 479999999999999999999998876321 11000 000111111222333344445555677778888888888887
Q ss_pred CCCcCccccccccccCCCCCCCChhhhhhhhhcCCCCcccCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCcccchh
Q 019973 79 SADYGKVFNVTCGVRAKLNPPCNAVGYIDRKVLGINHMYHHPAWRRSKACTQDSPFEGPLRKDAPSWCHAPFEPEGLLSS 158 (333)
Q Consensus 79 ~~~~~~~~~~~c~~~~~~~~~~N~~~~iDr~vlg~~Hly~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~fDPEGlLst 158 (333)
|.+|.+ -.|.||+++|.||++||.+||||+|++||.|+||.|+|+.|++|+|+|.||+.||||||+||+
T Consensus 326 G~~~~~-----------~~P~CnAvGy~DrqvLGi~HiY~hP~~~r~k~cs~n~P~nG~l~~DAPSWCqapFdPEGilss 394 (549)
T KOG4683|consen 326 GKHDYN-----------AHPKCNAVGYADRQVLGIAHIYQHPTAKRVKDCSINYPNNGPLPPDAPSWCQAPFDPEGILSS 394 (549)
T ss_pred cccccC-----------CCCCccchhhhHHhhhhhHHHhcCchHHHhhhcccCCCCCCCCCCCCchhhcCCCChHHHHHH
Confidence 754321 135699999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhhhcCCcCccccCCChhHHHHHhhHHHHHHHHHHHHH
Q 019973 159 VSSILSTIIGVHFGHVIIHTKGHLARLKQWVTMGFALLIFGLTLHFTNAIPLNKQLYTLSYVCVTSGAAALVFSAIYALV 238 (333)
Q Consensus 159 lpai~~~l~G~~aG~~l~~~~~~~~~~~~l~~~G~~ll~lG~l~~~~~~~PinK~lWT~Sfvl~t~G~a~l~la~~y~li 238 (333)
+.|++++++|+++|+++...+....|+++|...+.++.++|..++....+|+||+||+.||+++|+|.|.++++..|+++
T Consensus 395 i~avv~~llG~h~Ghiilh~k~~~sRir~wis~~~~l~llg~tL~~~s~~Plnk~L~slsfvCVT~~~A~Li~S~mY~~i 474 (549)
T KOG4683|consen 395 ILAVVQVLLGAHAGHIILHHKNFQSRIRRWISLAILLGLLGGTLCGFSAIPLNKNLWSLSFVCVTVSLALLILSLMYYFI 474 (549)
T ss_pred HHHHHHHHHHhhcCeEEEEccchHHHHHHHHHHHHHHHHHhhhhhcccccchhHhHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999965568999999999999999999999999999999
Q ss_pred hccCccccccchhhcchhHHHHHHHhhhhhHhhhhhcceecCCCCCHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHH
Q 019973 239 DIWNLKYPFLPLAWIGMNAMLVYVMAAEGIFAGFINGWYYGDPHNTLPYWIKKHAFLGVWRSRKVSTILYVIFVEILFWG 318 (333)
Q Consensus 239 Dv~~~~~~~~pf~~~G~N~L~~Yv~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Sl~~al~~~~~~w~ 318 (333)
|+++|+.-..||+..|||+|++||++ +++.+.+. |+|+.++++.. ++...+ ..+ -+++|.
T Consensus 475 Dv~EW~~~~~P~~~~GMNAi~~YV~~--~vL~~~~~-W~~R~~~~~~H------~~l~~~--~t~---------~~L~W~ 534 (549)
T KOG4683|consen 475 DVREWSWSGYPFTECGMNAIVMYVGH--SVLHKMLP-WHWRIGEMNTH------FMLLLE--ATW---------NTLVWV 534 (549)
T ss_pred hHHHhhhccCChhhhccchhHHHHhH--HHHHHhcc-hhhccCCCcee------EEEeee--hhh---------hhhhhh
Confidence 99998877899999999999999998 89988877 89998888752 111111 111 235699
Q ss_pred HHHHHHHhcCcEEeC
Q 019973 319 LVTGILHRFGIYWKL 333 (333)
Q Consensus 319 li~~~L~rkkIfiKL 333 (333)
+++.+++|.+||+|+
T Consensus 535 ~i~~~~~~~~~Y~~~ 549 (549)
T KOG4683|consen 535 GIALYLDAQEFYYSV 549 (549)
T ss_pred hhheeeeheeeEecC
Confidence 999999999999986
No 2
>COG4299 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=6.1e-54 Score=397.85 Aligned_cols=257 Identities=29% Similarity=0.423 Sum_probs=224.4
Q ss_pred cccccchHHHHHHHHHHHHHHHHhcCCCCccCcccchhhhhhhHHHHHHHHHHHHHHHHHHHhcccCCCcccccCCCCCC
Q 019973 2 IRLCGVLQRIALSYLLVSLVEIFTKDVQDKDQSVGRFSIFRLYCWHWLMAACVLVVYLALLYGTYVPDWQFTIINKDSAD 81 (333)
Q Consensus 2 iRi~GVLQRIal~Y~~~all~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~y~~l~~~~~vp~~~~~~~~~g~~~ 81 (333)
.|+||||||||+||+++|+....++ .|+||+.++.++++||+++..+|+|+.+
T Consensus 112 tr~mGVLQrIaL~ylfAal~v~~L~-----------------~r~q~~laavLL~gYwl~lm~~p~P~~~---------- 164 (371)
T COG4299 112 TRGMGVLQRIALAYLFAALLVRQLR-----------------GRWQALLAAVLLAGYWLFLMFTPHPAAP---------- 164 (371)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC-----------------hHHHHHHHHHHHHHHHHHHhhcCCCccc----------
Confidence 6999999999999999999987766 3799999999999999999888888754
Q ss_pred cCccccccccccCCCCCCCChhhhhhhhhcCCCCcccCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHH
Q 019973 82 YGKVFNVTCGVRAKLNPPCNAVGYIDRKVLGINHMYHHPAWRRSKACTQDSPFEGPLRKDAPSWCHAPFEPEGLLSSVSS 161 (333)
Q Consensus 82 ~~~~~~~~c~~~~~~~~~~N~~~~iDr~vlg~~Hly~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~fDPEGlLstlpa 161 (333)
++..+|..+++|+...+.+|+|.. +| .|||||++||+|+
T Consensus 165 --------------l~~~Gn~g~~~d~l~i~~~hLy~~---------------dG------------~~dpeGLlstvPt 203 (371)
T COG4299 165 --------------LGGIGNVGESADPLQILNDHLYSA---------------DG------------GFDPEGLLSTVPT 203 (371)
T ss_pred --------------cccccccccccchhhhhhhhhhcc---------------cC------------CCCchhhhhcchH
Confidence 344689999999999999999974 33 3899999999999
Q ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhhhcCCcCccccCCChhHHHHHhhHHHHHHHHHHHHHhcc
Q 019973 162 ILSTIIGVHFGHVIIHTKGHLARLKQWVTMGFALLIFGLTLHFTNAIPLNKQLYTLSYVCVTSGAAALVFSAIYALVDIW 241 (333)
Q Consensus 162 i~~~l~G~~aG~~l~~~~~~~~~~~~l~~~G~~ll~lG~l~~~~~~~PinK~lWT~Sfvl~t~G~a~l~la~~y~liDv~ 241 (333)
+++++.|.+++|.+++++.+.+....+++.|++++++|+.|... +||||++||||||++|+|++.++++.|+.++|.+
T Consensus 204 tv~VLaGylaar~l~~~p~~~ra~l~la~~Gvvl~~~G~gW~~~--fPi~KkLWTssyvl~t~G~~llllaac~~l~e~~ 281 (371)
T COG4299 204 TVLVLAGYLAARPLQQKPGNPRAPLLLAGLGVVLTALGYGWAGR--FPISKKLWTSSYVLYTAGLGLLLLAACWVLAESP 281 (371)
T ss_pred HHHHHHHHHhhhHHhhCCCCCcchHHHHHHHHHHHHhccccccc--cccchhhcCCceeehhhhHHHHHHHHHHHHHcCc
Confidence 99999999999999998777777778999999999999999964 9999999999999999999999999999999999
Q ss_pred CccccccchhhcchhHHHHHHHhhhhhHhhhhh-cceec--CCCCCHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHH
Q 019973 242 NLKYPFLPLAWIGMNAMLVYVMAAEGIFAGFIN-GWYYG--DPHNTLPYWIKKHAFLGVWRSRKVSTILYVIFVEILFWG 318 (333)
Q Consensus 242 ~~~~~~~pf~~~G~N~L~~Yv~~~~~l~~~~l~-~~~~~--~~~~~l~~~~~~~l~~~~~~~~~~~Sl~~al~~~~~~w~ 318 (333)
..|++..||+++|.|||..|++| +++..++- .+... .|+.+ .+|.++.++++. .++..+|+.|++.+..++|
T Consensus 282 ~~kr~~~pf~i~GlNalalyvls--~L~~v~l~~~~g~getaps~~-~~w~~~n~f~s~-~g~~~Gsll~aL~yvl~~W- 356 (371)
T COG4299 282 GGKRLLAPFTIPGLNALALYVLS--ILIKVWLLLDWGVGETAPSQS-IAWSLLNMFRSS-FGPVGGSLLYALGYVLAVW- 356 (371)
T ss_pred ccCcCcCceeecCcchhHHHHHH--HHHHHHHhhccccccccCCcc-hhHHHHHHHHHh-cCCCCchhHHHHHHHHHHH-
Confidence 99999999999999999999999 77765442 22221 23334 689999988755 5889999999998555555
Q ss_pred HHHHHHHhcCcEEeC
Q 019973 319 LVTGILHRFGIYWKL 333 (333)
Q Consensus 319 li~~~L~rkkIfiKL 333 (333)
+.+++|+||+|++|+
T Consensus 357 l~~~~MaRrg~~~Kl 371 (371)
T COG4299 357 LGLAWMARRGIIWKL 371 (371)
T ss_pred HHHHHHHhcceeeeC
Confidence 789999999999996
No 3
>PF06423 GWT1: GWT1; InterPro: IPR009447 Glycosylphosphatidylinositol (GPI) is a conserved post-translational modification to anchor cell surface proteins to plasma membrane in eukaryotes. GWT1 is involved in GPI anchor biosynthesis; it is required for inositol acylation in yeast [].; GO: 0016746 transferase activity, transferring acyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=98.38 E-value=2.7e-06 Score=73.21 Aligned_cols=116 Identities=18% Similarity=0.248 Sum_probs=91.9
Q ss_pred CcccchhHHHHHHHHHHHHHHHHhhccccch---------HHHHHHHHHHHHHHHHHHHhhhcCCcCccccCCChhHHHH
Q 019973 152 PEGLLSSVSSILSTIIGVHFGHVIIHTKGHL---------ARLKQWVTMGFALLIFGLTLHFTNAIPLNKQLYTLSYVCV 222 (333)
Q Consensus 152 PEGlLstlpai~~~l~G~~aG~~l~~~~~~~---------~~~~~l~~~G~~ll~lG~l~~~~~~~PinK~lWT~Sfvl~ 222 (333)
-||++|...-++-=++|+..|+.+.+.++.. ++..+++.+.+++.++-.+++.. ..|++.++...+||+.
T Consensus 3 rEGi~S~~GY~aIyl~g~~~G~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~vSRRlaNl~Yvlw 81 (136)
T PF06423_consen 3 REGIFSLPGYLAIYLIGVSLGRYILPPSSSSNSSSRRQWIKLLIKLLILSFIFWALYYLLNSY-IEPVSRRLANLPYVLW 81 (136)
T ss_pred cchhhhHHHHHHHHHHHHHHhhhhhCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCchhHHhcchHHHHH
Confidence 4999999999999999999999986544322 33356777777777777777532 5899999999999999
Q ss_pred HhhHHHHHHHHHHHHHhccCccc-----cccchhhcchhHHHHHHHhhhhhHh
Q 019973 223 TSGAAALVFSAIYALVDIWNLKY-----PFLPLAWIGMNAMLVYVMAAEGIFA 270 (333)
Q Consensus 223 t~G~a~l~la~~y~liDv~~~~~-----~~~pf~~~G~N~L~~Yv~~~~~l~~ 270 (333)
+.+.....++.+..+-++....+ ....++.+.+|.|++|+++ .++.
T Consensus 82 v~a~n~~~l~~~~~i~~~~~~~~~~~~~~~~l~~aiN~N~L~~FLla--NllT 132 (136)
T PF06423_consen 82 VLAFNTFFLALYLLIELLLFRPKASYSKTPCLLDAINRNGLFVFLLA--NLLT 132 (136)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccHHHHHHcccccHHHHHH--HHHH
Confidence 99999988888776666654332 4567889999999999999 5654
No 4
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=97.18 E-value=0.0046 Score=53.99 Aligned_cols=92 Identities=18% Similarity=0.173 Sum_probs=61.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhh-----cCCcCccccCCChhHHHHHhhHHHHHHHHHHHHHhccCccccccchhhc
Q 019973 179 KGHLARLKQWVTMGFALLIFGLTLHF-----TNAIPLNKQLYTLSYVCVTSGAAALVFSAIYALVDIWNLKYPFLPLAWI 253 (333)
Q Consensus 179 ~~~~~~~~~l~~~G~~ll~lG~l~~~-----~~~~PinK~lWT~Sfvl~t~G~a~l~la~~y~liDv~~~~~~~~pf~~~ 253 (333)
+++++..++.+..++...+...+... ....+.+....+....+.....++...+++..+.+-.+.++..+||...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~y~~l~~ll~~~~~~~~~~~~l~~~ 90 (163)
T PF04235_consen 11 EEHRKLLRRLLLIGLAVGLPLALLSAASWLSAWPSPPAAHLSSVLYMLGGPLLALGYVALLILLCQKRPRQRLLRPLAAV 90 (163)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence 34444455555554444333222221 1113455555666666677778888889999999988877789999999
Q ss_pred chhHHHHHHHhhhhhHhhh
Q 019973 254 GMNAMLVYVMAAEGIFAGF 272 (333)
Q Consensus 254 G~N~L~~Yv~~~~~l~~~~ 272 (333)
|+-|++.|+.+ .++...
T Consensus 91 GrmaLT~Yi~q--sii~~~ 107 (163)
T PF04235_consen 91 GRMALTNYILQ--SIIGTL 107 (163)
T ss_pred hhHHHHHHHHH--HHHHHH
Confidence 99999999998 665543
No 5
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=97.06 E-value=0.0044 Score=56.71 Aligned_cols=31 Identities=13% Similarity=0.306 Sum_probs=27.9
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHhhcccc
Q 019973 150 FEPEGLLSSVSSILSTIIGVHFGHVIIHTKG 180 (333)
Q Consensus 150 fDPEGlLstlpai~~~l~G~~aG~~l~~~~~ 180 (333)
+++||....+|.+...++|+.+|+...++.+
T Consensus 160 ~~~~~~~Pl~PW~~~~l~G~~~G~~~~~~~~ 190 (223)
T PF07786_consen 160 FFSNGYFPLFPWLGFFLLGMALGRLFLRKGR 190 (223)
T ss_pred CCcCCcCccHHHHHHHHHHHHHHHHHHHhcc
Confidence 6889999999999999999999999977643
No 6
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.68 E-value=1.5 Score=43.63 Aligned_cols=119 Identities=15% Similarity=0.107 Sum_probs=63.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhhh----c------------CCcCccccCCC
Q 019973 153 EGLLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQWVTMGFALLIFGLTLHF----T------------NAIPLNKQLYT 216 (333)
Q Consensus 153 EGlLstlpai~~~l~G~~aG~~l~~~~~~~~~~~~l~~~G~~ll~lG~l~~~----~------------~~~PinK~lWT 216 (333)
|+..+-+..=..-.+|+.+|..-++.++....-..+...+++.++.+..+.. . ...|.+|.-=+
T Consensus 188 ~w~FNP~aWQllFv~G~~~g~~~~~~~~~~~~~~~l~~la~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dK~~L~ 267 (358)
T PF10129_consen 188 GWFFNPFAWQLLFVLGLWLGWGWRRGRRFLPRRRWLVWLAVAYVLFAFFWRLFWGFPPLPALLPDWLPFYFYPFDKTDLG 267 (358)
T ss_pred ccccChHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCCCCcccCC
Confidence 4444444444456678888876655441111112233333333333333321 1 12358888888
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHhccCccccccchhhcchhHHHHHHHhhhhhHhhhhh
Q 019973 217 LSYVCVTSGAAALVFSAIYALVDIWNLKYPFLPLAWIGMNAMLVYVMAAEGIFAGFIN 274 (333)
Q Consensus 217 ~Sfvl~t~G~a~l~la~~y~liDv~~~~~~~~pf~~~G~N~L~~Yv~~~~~l~~~~l~ 274 (333)
+-.++=-..++.++..++-..-.- ..+++.+|+...|+|||-+|+.+ .++....+
T Consensus 268 ~~Rllhflala~lv~~l~~~~~~~-~~~~~~~~l~~~Gr~SL~VF~~~--~vl~~~~~ 322 (358)
T PF10129_consen 268 PLRLLHFLALAYLVAWLLPAGWRW-LRRRWLRPLILLGRHSLPVFCVG--VVLSLAGQ 322 (358)
T ss_pred HHHHHHHHHHHHHHHHHhccccHh-HhhhhhhHHHHHccCchHHHHHH--HHHHHHHH
Confidence 887775444444433322211110 01346799999999999999998 55554333
No 7
>PRK10835 hypothetical protein; Provisional
Probab=91.97 E-value=4.8 Score=40.10 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=28.1
Q ss_pred HHHHHHHHhccCccccccchhhcchhHHHHHHHhhhhhHhh
Q 019973 231 FSAIYALVDIWNLKYPFLPLAWIGMNAMLVYVMAAEGIFAG 271 (333)
Q Consensus 231 la~~y~liDv~~~~~~~~pf~~~G~N~L~~Yv~~~~~l~~~ 271 (333)
.+++..+.+-++++++.++|...|+-|++.|+.. +++..
T Consensus 276 ~~~~~ll~~~~~~~~~~~~la~~GrmaLTnYl~Q--Sii~~ 314 (373)
T PRK10835 276 AALIYGFWPQLSRWRLTLAIACVGRMALTNYLLQ--TLICT 314 (373)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 3344444554444567799999999999999988 67644
No 8
>PF01757 Acyl_transf_3: Acyltransferase family; InterPro: IPR002656 This entry contains a range of acyltransferase enzymes as well as yet uncharacterised proteins from Caenorhabditis elegans. It also includes the protein OatA. The pathogenic bacteria, Staphylococcus aureus, is able to cause persistent infections due to its ability to resist the immune defence system. Lysozyme, a cell wall-lytic enzyme, is one of the first defence compounds induced in serum and tissues after the onset of infection. S. aureus has complete resistance to lysozyme action by O-acetylating its peptidoglycan (PG) by O-acetyltransferase (OatA) [, ]. Staphylococcus bacteria are one of the only bacterial genera that are resistant to lysozyme and tend to colonise the skin and mucosa of humans and animals []. OatA is an integral membrane protein. This entry also includes NolL proteins. NolL-dependent acetylation is specific for the fucosyl penta-N-acetylglucosamine species. In addition, the NolL protein caused elevated production of lipo-chitin oligosaccharides (LCOs). The NolL protein obtained from Rhizobium loti (Mesorhizobium loti) functions as an acetyl transferase [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=90.64 E-value=4 Score=37.01 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=18.0
Q ss_pred cchhhcchhHHHHHHHhhhhhHh
Q 019973 248 LPLAWIGMNAMLVYVMAAEGIFA 270 (333)
Q Consensus 248 ~pf~~~G~N~L~~Yv~~~~~l~~ 270 (333)
++++.+|.++..+|+.| ..+.
T Consensus 284 ~~l~~lg~~S~~iYl~H--~~v~ 304 (340)
T PF01757_consen 284 KILSFLGRYSYGIYLIH--FPVI 304 (340)
T ss_pred HHHHHHHHHHHHHHHHH--HHHH
Confidence 68999999999999999 4444
No 9
>PF15345 TMEM51: Transmembrane protein 51
Probab=86.50 E-value=0.55 Score=43.92 Aligned_cols=57 Identities=26% Similarity=0.500 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCcC----------------------ccccCCChhHHHHHhhHHHHHHHHHHHHHhccCcc
Q 019973 188 WVTMGFALLIFGLTLHFTNAIP----------------------LNKQLYTLSYVCVTSGAAALVFSAIYALVDIWNLK 244 (333)
Q Consensus 188 l~~~G~~ll~lG~l~~~~~~~P----------------------inK~lWT~Sfvl~t~G~a~l~la~~y~liDv~~~~ 244 (333)
|-+.|+.++++|.++--|+++| -+++--|..|||+-+|.++|+|++|.-+=|-|+.+
T Consensus 9 L~AiG~Gml~LGiiM~vW~~VPg~~~~~~~~~~~~n~~~~~~~~~ksKt~SVAyVLVG~Gv~LLLLSICL~IR~KRr~r 87 (233)
T PF15345_consen 9 LTAIGVGMLALGIIMIVWNLVPGFSSGNKPTPQGSNSTEPSDGNLKSKTFSVAYVLVGSGVALLLLSICLSIRDKRRRR 87 (233)
T ss_pred HHHHhHhHHHHhhHheeeeecccccCCCCCCCCCCCCcCCCCCcccceeEEEEEehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 5578888888888886543344 23345667799999999999999999888755443
No 10
>COG2311 Predicted membrane protein [Function unknown]
Probab=84.98 E-value=22 Score=36.10 Aligned_cols=45 Identities=20% Similarity=0.069 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhccCccccccchhhcchhHHHHHHHhhhhhHhhhh
Q 019973 227 AALVFSAIYALVDIWNLKYPFLPLAWIGMNAMLVYVMAAEGIFAGFI 273 (333)
Q Consensus 227 a~l~la~~y~liDv~~~~~~~~pf~~~G~N~L~~Yv~~~~~l~~~~l 273 (333)
++...+++.++.--.+..+..++|...|+=|++.|++. +++.+++
T Consensus 285 ~~gY~~li~ll~~~~~~~~~~~~~A~vGRmALTNYLlQ--Siv~T~i 329 (394)
T COG2311 285 ALGYASLVGLLWPKLRRGALLRAFAAVGRMALTNYLLQ--SIVCTTI 329 (394)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 33334444555544445557789999999999999998 7776644
No 11
>COG3594 NolL Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]
Probab=80.64 E-value=29 Score=34.54 Aligned_cols=58 Identities=12% Similarity=0.155 Sum_probs=36.3
Q ss_pred ccccCCChhH-HHHHhhHHHHHHHHHHHHHhccCccccccchhhcchhHHHHHHHhhhhhHhhhhh
Q 019973 210 LNKQLYTLSY-VCVTSGAAALVFSAIYALVDIWNLKYPFLPLAWIGMNAMLVYVMAAEGIFAGFIN 274 (333)
Q Consensus 210 inK~lWT~Sf-vl~t~G~a~l~la~~y~liDv~~~~~~~~pf~~~G~N~L~~Yv~~~~~l~~~~l~ 274 (333)
.+++.|..++ +...+|+++..+..+...+|. ..++++..|+|+|.+|.+| +++-+.+.
T Consensus 228 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~lG~~TL~I~~lH--g~v~~~~~ 286 (343)
T COG3594 228 SFGNIFVGGLLRALVLGLALNALVRFAAKIPQ-----LRKLVTKLGKNTLYIYLLH--GFVFKVLR 286 (343)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHHHHhhhhHHHHHHH--HHHHHHHH
Confidence 4454333333 344455555555555554443 2478999999999999999 66665554
No 12
>COG5062 Uncharacterized membrane protein [Function unknown]
Probab=67.93 E-value=15 Score=36.85 Aligned_cols=161 Identities=19% Similarity=0.225 Sum_probs=88.9
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHhhccccchHHH-HHHHHHHHHHHHHHHHhhhcCCcCccccCCChhHHHHHhhHHHH
Q 019973 151 EPEGLLSSVSSILSTIIGVHFGHVIIHTKGHLARL-KQWVTMGFALLIFGLTLHFTNAIPLNKQLYTLSYVCVTSGAAAL 229 (333)
Q Consensus 151 DPEGlLstlpai~~~l~G~~aG~~l~~~~~~~~~~-~~l~~~G~~ll~lG~l~~~~~~~PinK~lWT~Sfvl~t~G~a~l 229 (333)
.-||+.|++|-+..-+.|.-.|++..++++.+++. ..+...-+..+.+=.+.++. -.. +.++-...||+...-+-.+
T Consensus 266 NrEGI~sll~yisIfl~g~~tg~vvf~~kpTr~~~wk~~~~~~af~lciylVfnf~-s~s-sRRlaNlpfv~wi~~lh~f 343 (429)
T COG5062 266 NREGITSLLPYISIFLMGADTGKVVFKKKPTRKKAWKIIILYNAFFLCVYLVFNFY-STS-SRRLANLPFVMWIMLLHTF 343 (429)
T ss_pred chhhhhhcchhhhheeeecccceEEecCCCchHHHHHHHHHHHHHHHHHHHHHhhc-ccc-hhhhcCccHHHHHHHHHHH
Confidence 45999999999999999999999887655433332 22211112222333333432 123 8999999999987766554
Q ss_pred HHHHHHHHHhccCc--cccccchhhcchhHHHHHHHhhhhhHhhhhhcceecCCCCCHHHHHHHHHhhhhhcccchhHHH
Q 019973 230 VFSAIYALVDIWNL--KYPFLPLAWIGMNAMLVYVMAAEGIFAGFINGWYYGDPHNTLPYWIKKHAFLGVWRSRKVSTIL 307 (333)
Q Consensus 230 ~la~~y~liDv~~~--~~~~~pf~~~G~N~L~~Yv~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Sl~ 307 (333)
....|.+.|---. .+-..-|+-.-+|-++++... .+....++.- ..+. .+. +....++.
T Consensus 344 -~lt~y~lfd~ts~~yn~v~~~fes~n~n~llvfs~a--nVltg~vn~s-----~kt~---------ss~--~Shak~lt 404 (429)
T COG5062 344 -HLTVYELFDRTSKIYNLVMHRFESKNLNFLLVFSNA--NVLTGKVNSS-----SKTM---------SSC--SSHAKCLT 404 (429)
T ss_pred -HhheeeeeecccchhhhHHHHHHhcccchHHHHHHH--HHHhchhhhc-----hhhh---------ccc--cchhHHHH
Confidence 3345667775221 222334444555555555544 3322211100 0000 000 11234555
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcEEeC
Q 019973 308 YVIFVEILFWGLVTGILHRFGIYWKL 333 (333)
Q Consensus 308 ~al~~~~~~w~li~~~L~rkkIfiKL 333 (333)
|.+.++-+.. .++.++++|+|++|+
T Consensus 405 ~Lva~fsi~c-~i~s~la~k~i~~~l 429 (429)
T COG5062 405 YLVAVFSIPC-AINSKLAGKLIVSGL 429 (429)
T ss_pred HHHHHHHHHH-HHHHHHhhhhhcccC
Confidence 5444444445 478999999999875
No 13
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.87 E-value=15 Score=37.01 Aligned_cols=46 Identities=9% Similarity=0.026 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcccccCCCCCCcCcccccccc
Q 019973 46 WHWLMAACVLVVYLALLYGTYVPDWQFTIINKDSADYGKVFNVTCG 91 (333)
Q Consensus 46 ~~~~~~~~ll~~y~~l~~~~~vp~~~~~~~~~g~~~~~~~~~~~c~ 91 (333)
+|-++....+..|.+..++..||++.+-..+...+.+++.+..+||
T Consensus 281 ~~R~V~~~~L~~~~~~~~~~~V~~~~~~~~~~~~~~~~r~~~~~~G 326 (549)
T KOG4683|consen 281 WQRAVHDVCLFSGELAVLLALVATYLGLTFGLRVPGCPRGYLGPGG 326 (549)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhhceecccccCCCCcccccCCc
Confidence 4556777778888888888889988754334444445566655554
No 14
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=39.62 E-value=68 Score=34.28 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhh
Q 019973 188 WVTMGFALLIFGLTLH 203 (333)
Q Consensus 188 l~~~G~~ll~lG~l~~ 203 (333)
++.+|+..++.|++.+
T Consensus 396 l~~~gi~sii~G~lyG 411 (646)
T PRK05771 396 LIYLGISTIIWGLLTG 411 (646)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4466666666777665
No 15
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=30.03 E-value=1.8e+02 Score=27.01 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=23.2
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHhhc
Q 019973 150 FEPEGLLSSVSSILSTIIGVHFGHVIIH 177 (333)
Q Consensus 150 fDPEGlLstlpai~~~l~G~~aG~~l~~ 177 (333)
+.||+.+...-.+..+++|.+..-...+
T Consensus 169 ~~~e~~l~N~~gl~~~~fg~~V~~~~~~ 196 (214)
T cd08764 169 LPAEGVLGNFIGIVLVIFGGLVVYLVTE 196 (214)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHhccC
Confidence 6889999998888888889888776643
No 16
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=29.05 E-value=47 Score=31.16 Aligned_cols=49 Identities=22% Similarity=0.326 Sum_probs=37.9
Q ss_pred CccccCCChhHHHHHhhHHHHHHHHHHHHHhccCccccccchhhcchhHH
Q 019973 209 PLNKQLYTLSYVCVTSGAAALVFSAIYALVDIWNLKYPFLPLAWIGMNAM 258 (333)
Q Consensus 209 PinK~lWT~Sfvl~t~G~a~l~la~~y~liDv~~~~~~~~pf~~~G~N~L 258 (333)
+=+|++||-+.+.++.||+.+++ +.|-+...+..++...|++++|..|=
T Consensus 62 ~~~k~~~~~~~i~lv~~W~v~~f-L~y~i~~~~~~~~~fDPyEILGl~pg 110 (230)
T KOG0721|consen 62 VSPKSISTKRKVFLVVGWAVIAF-LIYKIMNSRRERQKFDPYEILGLDPG 110 (230)
T ss_pred cCcccchhHHHHHHHHHHHHHHH-HHHHHhhhhHHhhcCCcHHhhCCCCC
Confidence 35679999999999999998655 45666666566667899999997763
No 17
>PF10658 DUF2484: Protein of unknown function (DUF2484); InterPro: IPR018919 A role of this family in UDP-N-acetylenolpyruvoylglucosamine reductase, as MurB, could not be confirmed.
Probab=28.59 E-value=1.1e+02 Score=24.14 Aligned_cols=35 Identities=14% Similarity=0.330 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhcCCcCccccCCChhHHHHHhhHHHH
Q 019973 192 GFALLIFGLTLHFTNAIPLNKQLYTLSYVCVTSGAAAL 229 (333)
Q Consensus 192 G~~ll~lG~l~~~~~~~PinK~lWT~Sfvl~t~G~a~l 229 (333)
+.+..+.+-+... .|...+-|++.|+|+..|.-++
T Consensus 8 a~lWvv~A~~~Am---LP~rd~hw~~a~~Lia~g~pLl 42 (77)
T PF10658_consen 8 ACLWVVAANVVAM---LPSRDNHWRPAYVLIAAGIPLL 42 (77)
T ss_pred HHHHHHHHHHHHH---cCchhhcchhHHHHHHHHhhHh
Confidence 3344444444433 7888899999999999987765
No 18
>PF11255 DUF3054: Protein of unknown function (DUF3054); InterPro: IPR021414 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=26.97 E-value=3.7e+02 Score=22.33 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=41.4
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHhhc-cc----cchHHHHH--HHHHHHHHHHHHHHhhhcCCcCccccCCChhHHHH
Q 019973 150 FEPEGLLSSVSSILSTIIGVHFGHVIIH-TK----GHLARLKQ--WVTMGFALLIFGLTLHFTNAIPLNKQLYTLSYVCV 222 (333)
Q Consensus 150 fDPEGlLstlpai~~~l~G~~aG~~l~~-~~----~~~~~~~~--l~~~G~~ll~lG~l~~~~~~~PinK~lWT~Sfvl~ 222 (333)
.+|.|.+.|. .--++|..++..+.. ++ +..++... ...| +....+|.+++.. .+...=.+||+++
T Consensus 24 ~~~~~~l~Ta---~PFl~Gw~~~~~~~~~~~~~~~~~~~~~~~~g~~~W-~~a~~vG~~LR~~----~~~~~~~~~FiiV 95 (112)
T PF11255_consen 24 LSPAGVLRTA---WPFLVGWLLGWPLLGAYRRDARGSPGRAWPTGVVVW-LVAVPVGMALRAL----LFGGGPAWSFIIV 95 (112)
T ss_pred ccHHHHHHHH---HHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHH-HHHHHHHHHHHHH----HhCCCCCcchHHH
Confidence 4777777764 233556555554432 11 12222211 1122 2235577777642 4556666899999
Q ss_pred HhhHHHHHHH
Q 019973 223 TSGAAALVFS 232 (333)
Q Consensus 223 t~G~a~l~la 232 (333)
+.+...+++.
T Consensus 96 a~~~~~vlL~ 105 (112)
T PF11255_consen 96 ALVFLAVLLL 105 (112)
T ss_pred HHHHHHHHHH
Confidence 9998877664
No 19
>PRK03854 opgC glucans biosynthesis protein; Provisional
Probab=26.82 E-value=4.1e+02 Score=25.97 Aligned_cols=18 Identities=6% Similarity=0.314 Sum_probs=16.2
Q ss_pred ccchhhcchhHHHHHHHh
Q 019973 247 FLPLAWIGMNAMLVYVMA 264 (333)
Q Consensus 247 ~~pf~~~G~N~L~~Yv~~ 264 (333)
..+++.+|.++--+|+.|
T Consensus 303 ~~~l~~lg~~Sy~iYL~H 320 (375)
T PRK03854 303 SPRVTYLVNASLFIYLVH 320 (375)
T ss_pred cHHHHHhhhhhhHHHHHH
Confidence 456899999999999999
No 20
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=25.63 E-value=2.4e+02 Score=23.17 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=19.1
Q ss_pred CCCcccchhHHH--HHHHHHHHHHHHHhhcc
Q 019973 150 FEPEGLLSSVSS--ILSTIIGVHFGHVIIHT 178 (333)
Q Consensus 150 fDPEGlLstlpa--i~~~l~G~~aG~~l~~~ 178 (333)
+.--|++|++.. ++.+++|++.|++|-++
T Consensus 39 ~~~l~~~g~IG~~~v~pil~G~~lG~WLD~~ 69 (100)
T TIGR02230 39 WEGLGMFGLIGWSVAIPTLLGVAVGIWLDRH 69 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556676654 34678888888888653
No 21
>PRK11089 PTS system glucose-specific transporter subunits IIBC; Provisional
Probab=25.43 E-value=5.9e+02 Score=26.57 Aligned_cols=40 Identities=3% Similarity=-0.189 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhhh
Q 019973 165 TIIGVHFGHVIIHTKGHLARLKQWVTMGFALLIFGLTLHF 204 (333)
Q Consensus 165 ~l~G~~aG~~l~~~~~~~~~~~~l~~~G~~ll~lG~l~~~ 204 (333)
.+.|...+.+.+.+++++++.+.++..+++.-.++-+.++
T Consensus 260 glpgaalA~y~~ak~~~kk~vk~l~~sa~lta~ltGITEP 299 (477)
T PRK11089 260 GLPAAAIAIWHSAKPENRAKVGGIMISAALTSFLTGITEP 299 (477)
T ss_pred hHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhcCchH
Confidence 3445555556666666666776666666555555445553
No 22
>PLN02810 carbon-monoxide oxygenase
Probab=24.30 E-value=3.6e+02 Score=25.50 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=20.6
Q ss_pred ccccchHHHHHHHHHHHHHHHHhcCC
Q 019973 3 RLCGVLQRIALSYLLVSLVEIFTKDV 28 (333)
Q Consensus 3 Ri~GVLQRIal~Y~~~all~l~~~~~ 28 (333)
|+-..||-+|++-.++++...+-.++
T Consensus 81 ~iH~~lh~~Al~l~vvGl~Avf~~Hn 106 (231)
T PLN02810 81 LIHLVLHAIALILGIFGICAAFKNHN 106 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567999999999999988776554
No 23
>PF05628 Borrelia_P13: Borrelia membrane protein P13; InterPro: IPR008420 Lyme borreliosis (or Lyme's disease) is one of the most common tick-borne diseases. It is caused by bacteria from the genus Borrelia. This family consists of P13 proteins from Borrelia species. P13 is a 13 kDa integral membrane protein which is post-translationally processed at both ends and modified by an unknown mechanism [].
Probab=23.91 E-value=1.7e+02 Score=25.35 Aligned_cols=77 Identities=13% Similarity=0.166 Sum_probs=49.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhhhcCCcCccccCCChhHHHHHhhHHHHH
Q 019973 153 EGLLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQWVTMGFALLIFGLTLHFTNAIPLNKQLYTLSYVCVTSGAAALV 230 (333)
Q Consensus 153 EGlLstlpai~~~l~G~~aG~~l~~~~~~~~~~~~l~~~G~~ll~lG~l~~~~~~~PinK~lWT~Sfvl~t~G~a~l~ 230 (333)
|=.-...|...+.++|.-.|.+.+...-.--.....-+.|+.++..|...+.. ---..-+.|+.+.++.+.|...++
T Consensus 8 ~k~~~l~P~LLNlFlgfGIGSFvqGD~igGg~~lg~~~lg~~L~~tG~~~~~~-~~~~~~~~~~~g~~l~~iG~~tm~ 84 (135)
T PF05628_consen 8 EKQTILVPFLLNLFLGFGIGSFVQGDYIGGGAVLGFDVLGGILILTGYIININ-ANSKDDKMSITGSILMGIGGLTMA 84 (135)
T ss_pred hccchhHHHHHHHHHhcCcchhhccceeCchhhhhHHHHhHHHHHhhheeecc-cccccccccchhHHHHHHhHHHHH
Confidence 33445599999999999999999754322222334456777778888876531 011233458888888887766543
No 24
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=22.13 E-value=6.1e+02 Score=25.63 Aligned_cols=107 Identities=11% Similarity=0.045 Sum_probs=58.1
Q ss_pred CcccchhHHHHHHHHHHHHHHHHhh---ccccchHHHHHHHHHHHHHHHHHHHh-----hhcCCcCccccCC--ChhHHH
Q 019973 152 PEGLLSSVSSILSTIIGVHFGHVII---HTKGHLARLKQWVTMGFALLIFGLTL-----HFTNAIPLNKQLY--TLSYVC 221 (333)
Q Consensus 152 PEGlLstlpai~~~l~G~~aG~~l~---~~~~~~~~~~~l~~~G~~ll~lG~l~-----~~~~~~PinK~lW--T~Sfvl 221 (333)
|-+.+.+++++..++++-...++.. ++..+.....+ +..|.++..+|++. +.. .-+...+.| -+.+++
T Consensus 313 p~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k-~~~G~~l~~~~~~~~~~~~~~~-~~~~~~s~~~~i~~~~~ 390 (475)
T TIGR00924 313 PVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLK-FTLGMLFCGASFLTFAASIWFA-DAGGLTSPWFMVLIYLF 390 (475)
T ss_pred CHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHH-HHHHHHHHHHHHHHHHHHHhhc-CCCCccCHHHHHHHHHH
Confidence 4557778889888888877766432 21111111111 23333333333322 111 011223444 778888
Q ss_pred HHhhHHHHHHHHHHHHHhccCcc-ccccchhhcchhHHHHHHHh
Q 019973 222 VTSGAAALVFSAIYALVDIWNLK-YPFLPLAWIGMNAMLVYVMA 264 (333)
Q Consensus 222 ~t~G~a~l~la~~y~liDv~~~~-~~~~pf~~~G~N~L~~Yv~~ 264 (333)
.|.|-.+..=...-++.|.-..+ +. ++.|.+.+..++.+
T Consensus 391 ~~~ge~~~~p~~~~~~~~~aP~~~~g----~~~g~~~l~~~~g~ 430 (475)
T TIGR00924 391 QTLGELMISPLGLSWWTKIAPQRLMG----QMLGMWFLAQAMGS 430 (475)
T ss_pred HHHHHHHHhHHHHHHHHHhCCHHHHH----HHHHHHHHHHHHHH
Confidence 88887776666666666654221 21 47888888777755
Done!