Query 019973
Match_columns 333
No_of_seqs 146 out of 502
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 09:52:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p5n_A RIBU, riboflavin uptake 18.1 2.5E+02 0.0087 23.7 6.4 27 151-179 81-107 (189)
2 1jb0_J Photosystem 1 reaction 16.7 94 0.0032 20.6 2.5 22 155-176 7-28 (41)
3 2ks1_B Epidermal growth factor 15.1 1.8E+02 0.006 19.4 3.6 16 315-330 26-41 (44)
4 2k1k_A Ephrin type-A receptor 14.4 1.8E+02 0.006 18.7 3.4 11 318-328 28-38 (38)
5 4aps_A DI-OR tripeptide H+ sym 14.0 4.8E+02 0.016 23.9 7.8 52 151-202 319-370 (491)
6 1p58_A Major envelope protein 9.5 2.4E+02 0.0082 28.2 4.1 64 153-232 426-490 (495)
7 2xut_A Proton/peptide symporte 9.0 8.4E+02 0.029 22.5 7.8 26 153-178 56-81 (524)
8 2jwa_A Receptor tyrosine-prote 7.0 4.7E+02 0.016 17.3 3.4 17 315-331 26-42 (44)
9 3j27_A Envelope protein E; fla 6.4 3.7E+02 0.013 26.8 3.7 66 153-233 426-491 (495)
10 1v54_C Cytochrome C oxidase po 6.3 1.2E+03 0.04 20.7 6.9 16 208-223 186-201 (261)
No 1
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=18.10 E-value=2.5e+02 Score=23.70 Aligned_cols=27 Identities=7% Similarity=0.125 Sum_probs=14.5
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHhhccc
Q 019973 151 EPEGLLSSVSSILSTIIGVHFGHVIIHTK 179 (333)
Q Consensus 151 DPEGlLstlpai~~~l~G~~aG~~l~~~~ 179 (333)
+|-|.+.+ .++....|..+|-+.++++
T Consensus 81 ~~~g~~~~--~l~~~~~g~~~~~~y~k~~ 107 (189)
T 3p5n_A 81 DPVGPFAN--FLAGASFLLTAYAIYKNKR 107 (189)
T ss_dssp CSSHHHHH--HHHHHHHHHHHHHHHSSSC
T ss_pred chhHHHHH--HHHHHHHHHHHHHHHHhcc
Confidence 34444443 3445666777776665443
No 2
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=16.70 E-value=94 Score=20.56 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.6
Q ss_pred cchhHHHHHHHHHHHHHHHHhh
Q 019973 155 LLSSVSSILSTIIGVHFGHVII 176 (333)
Q Consensus 155 lLstlpai~~~l~G~~aG~~l~ 176 (333)
-|||-|-+++.-+++.||-++.
T Consensus 7 yLstAPVla~~w~~~tAg~lIE 28 (41)
T 1jb0_J 7 YLSTAPVLAAIWMTITAGILIE 28 (41)
T ss_dssp HTTBHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHH
Confidence 4899999999999999998874
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=15.06 E-value=1.8e+02 Score=19.37 Aligned_cols=16 Identities=13% Similarity=-0.112 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhcCcE
Q 019973 315 LFWGLVTGILHRFGIY 330 (333)
Q Consensus 315 ~~w~li~~~L~rkkIf 330 (333)
++-.++.+++.||++.
T Consensus 26 ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 26 VVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhhhhHhh
Confidence 3344445667777664
No 4
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=14.44 E-value=1.8e+02 Score=18.65 Aligned_cols=11 Identities=9% Similarity=-0.290 Sum_probs=7.6
Q ss_pred HHHHHHHHhcC
Q 019973 318 GLVTGILHRFG 328 (333)
Q Consensus 318 ~li~~~L~rkk 328 (333)
..++++++|||
T Consensus 28 ~~l~~~~~rrr 38 (38)
T 2k1k_A 28 LGILVFRSRRA 38 (38)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHHeecC
Confidence 34567788886
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=13.98 E-value=4.8e+02 Score=23.93 Aligned_cols=52 Identities=12% Similarity=0.140 Sum_probs=31.2
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHh
Q 019973 151 EPEGLLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQWVTMGFALLIFGLTL 202 (333)
Q Consensus 151 DPEGlLstlpai~~~l~G~~aG~~l~~~~~~~~~~~~l~~~G~~ll~lG~l~ 202 (333)
.+.|++.++.++...+.+...|++..+...++....+.+..|.++..++.++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~ 370 (491)
T 4aps_A 319 FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLL 370 (491)
T ss_dssp SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHH
Confidence 4568888999988888888888866543222212223344555555555544
No 6
>1p58_A Major envelope protein E; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=9.51 E-value=2.4e+02 Score=28.16 Aligned_cols=64 Identities=20% Similarity=0.434 Sum_probs=42.2
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH-HHHHHHhhhcCCcCccccCCChhHHHHHhhHHHHHH
Q 019973 153 EGLLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQWVTMGFAL-LIFGLTLHFTNAIPLNKQLYTLSYVCVTSGAAALVF 231 (333)
Q Consensus 153 EGlLstlpai~~~l~G~~aG~~l~~~~~~~~~~~~l~~~G~~l-l~lG~l~~~~~~~PinK~lWT~Sfvl~t~G~a~l~l 231 (333)
-|+++++.=.++..+|.....++-- ++-+. +++|.++- |+.+|.|--|.|-+++..|.-++.|
T Consensus 426 gg~f~sigKavh~vfg~~F~~lFGG-------------~sw~~kilig~ll~---WlG~n~rn~t~s~~~l~~G~ill~l 489 (495)
T 1p58_A 426 GGVFTSIGKALHQVFGAIYGAAFSG-------------VSWTMKILIGVIIT---WIGMNSRSTSLSVSLVLVGIVTLYL 489 (495)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhcc-------------hHHHHHHHHHHHHh---eEEeccCCchHHHHHHHHHHHhhee
Confidence 4677777766777777766554421 11111 33344432 3889999999999999999877766
Q ss_pred H
Q 019973 232 S 232 (333)
Q Consensus 232 a 232 (333)
+
T Consensus 490 ~ 490 (495)
T 1p58_A 490 G 490 (495)
T ss_pred e
Confidence 4
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=9.00 E-value=8.4e+02 Score=22.48 Aligned_cols=26 Identities=8% Similarity=-0.210 Sum_probs=19.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhcc
Q 019973 153 EGLLSSVSSILSTIIGVHFGHVIIHT 178 (333)
Q Consensus 153 EGlLstlpai~~~l~G~~aG~~l~~~ 178 (333)
-|++.++..+...+.....|++..+.
T Consensus 56 ~g~~~~~~~~~~~~~~~~~G~l~dr~ 81 (524)
T 2xut_A 56 AKDVFHSFVIGVYFFPLLGGWIADRF 81 (524)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888887777777778777543
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=7.04 E-value=4.7e+02 Score=17.33 Aligned_cols=17 Identities=6% Similarity=-0.121 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhcCcEE
Q 019973 315 LFWGLVTGILHRFGIYW 331 (333)
Q Consensus 315 ~~w~li~~~L~rkkIfi 331 (333)
++-..+..++.|||+.-
T Consensus 26 i~~l~~~~~~RRR~~~~ 42 (44)
T 2jwa_A 26 VLGVVFGILIKRRQQKI 42 (44)
T ss_dssp HHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHhheehhhhhc
Confidence 33444567788887753
No 9
>3j27_A Envelope protein E; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_A* 1p58_A
Probab=6.36 E-value=3.7e+02 Score=26.84 Aligned_cols=66 Identities=20% Similarity=0.367 Sum_probs=43.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhhhcCCcCccccCCChhHHHHHhhHHHHHHH
Q 019973 153 EGLLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQWVTMGFALLIFGLTLHFTNAIPLNKQLYTLSYVCVTSGAAALVFS 232 (333)
Q Consensus 153 EGlLstlpai~~~l~G~~aG~~l~~~~~~~~~~~~l~~~G~~ll~lG~l~~~~~~~PinK~lWT~Sfvl~t~G~a~l~la 232 (333)
-|+++++.=.++.++|.....++-- -+...|+ .+|++++ |+.+|-|--|.|-+++..|.-++.|+
T Consensus 426 gg~f~SiGKavH~vfg~~f~~lFGG-~swi~ki----lig~ll~----------Wlg~n~Rn~t~s~~~~~vG~ill~l~ 490 (495)
T 3j27_A 426 GGVFTSIGKALHQVFGAIYGAAFSG-VSWIMKI----LIGVIIT----------WIGMNSRSTSLSVSLVLVGVVTLYLG 490 (495)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGTSTB-CCHHHHH----HHHHHHH----------HHHHSSSSSTHHHHHHHHTTHHHHHH
T ss_pred ccceechHHHHHHHHHHHHHhhcCc-hHHHHHH----HHHHHHh----------eeeeccCCchHhHHHHHHhHhheeEE
Confidence 4678888877777777766554421 1222222 2343333 26689999999999999998877776
Q ss_pred H
Q 019973 233 A 233 (333)
Q Consensus 233 ~ 233 (333)
.
T Consensus 491 ~ 491 (495)
T 3j27_A 491 V 491 (495)
T ss_dssp H
T ss_pred c
Confidence 4
No 10
>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C* 2eil_C* 2eim_C* 2ein_C* 2y69_C* 2ybb_N* 2zxw_C* 3abk_C* 3abl_C* 3abm_C* 3ag1_C* 3ag2_C* 3ag3_C* 3ag4_C* 3asn_C* 3aso_C* 2occ_C* ...
Probab=6.29 E-value=1.2e+03 Score=20.71 Aligned_cols=16 Identities=13% Similarity=0.418 Sum_probs=7.9
Q ss_pred cCccccCCChhHHHHH
Q 019973 208 IPLNKQLYTLSYVCVT 223 (333)
Q Consensus 208 ~PinK~lWT~Sfvl~t 223 (333)
+-++.+...++|-+.|
T Consensus 186 f~~~~~~ygS~ff~lT 201 (261)
T 1v54_C 186 FTISDGVYGSTFFVAT 201 (261)
T ss_dssp SCTTSHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHH
Confidence 4455555555554444
Done!