Query 019973
Match_columns 333
No_of_seqs 146 out of 502
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 09:52:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019973.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019973hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0j_ f.23.18.1 (J:) Subunit 26.3 26 0.0019 21.6 2.8 22 155-176 7-28 (41)
2 d1v54c_ f.25.1.1 (C:) Mitochon 14.9 2.9E+02 0.021 22.5 9.7 75 149-224 121-200 (259)
3 d1m56c_ f.25.1.1 (C:) Bacteria 9.5 3.3E+02 0.024 22.1 7.1 18 207-224 189-206 (265)
4 d2pc6a2 d.58.18.6 (A:1-77) Ace 7.6 71 0.0052 21.9 1.4 10 5-14 13-22 (77)
5 d2f1fa1 d.58.18.6 (A:2-77) Ace 7.0 80 0.0058 21.6 1.4 10 5-14 12-21 (76)
6 d2fgca2 d.58.18.6 (A:27-104) A 6.6 87 0.0063 21.5 1.4 10 5-14 14-23 (78)
7 d1knya2 d.218.1.1 (A:1-125) Ka 6.1 53 0.0039 24.4 -0.1 11 149-159 109-119 (125)
8 d1pv7a_ f.38.1.2 (A:) Lactose 5.9 3E+02 0.022 21.4 4.8 26 153-178 45-70 (417)
9 d1pw4a_ f.38.1.1 (A:) Glycerol 5.3 6.8E+02 0.049 19.7 12.8 24 154-177 288-311 (447)
10 d1mxga1 b.71.1.1 (A:362-435) B 4.9 35 0.0025 22.9 -1.7 20 98-117 31-50 (74)
No 1
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=26.32 E-value=26 Score=21.59 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.8
Q ss_pred cchhHHHHHHHHHHHHHHHHhh
Q 019973 155 LLSSVSSILSTIIGVHFGHVII 176 (333)
Q Consensus 155 lLstlpai~~~l~G~~aG~~l~ 176 (333)
-|||-|-+++..++..||-++.
T Consensus 7 ylstAPVla~~w~~~tAG~lIE 28 (41)
T d1jb0j_ 7 YLSTAPVLAAIWMTITAGILIE 28 (41)
T ss_dssp HTTBHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHH
Confidence 4899999999999999998874
No 2
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.92 E-value=2.9e+02 Score=22.49 Aligned_cols=75 Identities=13% Similarity=0.238 Sum_probs=34.3
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHhhc-cccchHHHHHHHHHHHHHHHHHHHh---hhc-CCcCccccCCChhHHHHH
Q 019973 149 PFEPEGLLSSVSSILSTIIGVHFGHVIIH-TKGHLARLKQWVTMGFALLIFGLTL---HFT-NAIPLNKQLYTLSYVCVT 223 (333)
Q Consensus 149 ~fDPEGlLstlpai~~~l~G~~aG~~l~~-~~~~~~~~~~l~~~G~~ll~lG~l~---~~~-~~~PinK~lWT~Sfvl~t 223 (333)
+.||.++ ..++.++....|+.+..-.+. +++++++.++++...+++.++=... +.. ..+.++.+...++|-+.|
T Consensus 121 ~~~~~~l-pllnT~vLl~Ss~t~~~A~~~~~~~~~~~~~~~l~~t~~lg~~Fl~~q~~Ey~~~~~~~~~~~~gS~ff~lT 199 (259)
T d1v54c_ 121 PLNPLEV-PLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVAT 199 (259)
T ss_dssp CCCTTSH-HHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHHH
T ss_pred ccchhhh-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCcchHHHHHH
Confidence 4566543 345555555555554433322 1233344444444443333222222 211 235567777766666655
Q ss_pred h
Q 019973 224 S 224 (333)
Q Consensus 224 ~ 224 (333)
+
T Consensus 200 G 200 (259)
T d1v54c_ 200 G 200 (259)
T ss_dssp H
T ss_pred H
Confidence 4
No 3
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=9.53 E-value=3.3e+02 Score=22.08 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=10.8
Q ss_pred CcCccccCCChhHHHHHh
Q 019973 207 AIPLNKQLYTLSYVCVTS 224 (333)
Q Consensus 207 ~~PinK~lWT~Sfvl~t~ 224 (333)
.+.++-+.+.++|-+.|+
T Consensus 189 ~~~~~~~~~gs~ff~lTG 206 (265)
T d1m56c_ 189 AFGFAGNIYGANFFMATG 206 (265)
T ss_dssp SSCSSSSHHHHHHHHHHH
T ss_pred CCCcccchhHHHHHHHHH
Confidence 355666666666665554
No 4
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}
Probab=7.65 E-value=71 Score=21.94 Aligned_cols=10 Identities=40% Similarity=0.504 Sum_probs=8.0
Q ss_pred ccchHHHHHH
Q 019973 5 CGVLQRIALS 14 (333)
Q Consensus 5 ~GVLQRIal~ 14 (333)
||||.||+-.
T Consensus 13 pGvL~Ris~l 22 (77)
T d2pc6a2 13 AGALSRVAGL 22 (77)
T ss_dssp TTHHHHHHHH
T ss_pred ccHHHHHHHH
Confidence 7999998754
No 5
>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}
Probab=7.00 E-value=80 Score=21.60 Aligned_cols=10 Identities=30% Similarity=0.384 Sum_probs=7.9
Q ss_pred ccchHHHHHH
Q 019973 5 CGVLQRIALS 14 (333)
Q Consensus 5 ~GVLQRIal~ 14 (333)
||||.||+-.
T Consensus 12 ~GVL~Risgl 21 (76)
T d2f1fa1 12 SGALSRVIGL 21 (76)
T ss_dssp TTHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 7999998653
No 6
>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}
Probab=6.55 E-value=87 Score=21.51 Aligned_cols=10 Identities=30% Similarity=0.477 Sum_probs=7.7
Q ss_pred ccchHHHHHH
Q 019973 5 CGVLQRIALS 14 (333)
Q Consensus 5 ~GVLQRIal~ 14 (333)
||||.||+-.
T Consensus 14 pGvL~Ri~~l 23 (78)
T d2fgca2 14 PGVMRKVANL 23 (78)
T ss_dssp TTHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 7999998653
No 7
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=6.14 E-value=53 Score=24.40 Aligned_cols=11 Identities=27% Similarity=0.579 Sum_probs=8.9
Q ss_pred CCCCcccchhH
Q 019973 149 PFEPEGLLSSV 159 (333)
Q Consensus 149 ~fDPEGlLstl 159 (333)
-|||||+++.+
T Consensus 109 LyD~~g~~~~l 119 (125)
T d1knya2 109 IYDSGGYLEKV 119 (125)
T ss_dssp EEESSSHHHHH
T ss_pred eecCcchHHHH
Confidence 48999998865
No 8
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=5.86 E-value=3e+02 Score=21.39 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=21.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhcc
Q 019973 153 EGLLSSVSSILSTIIGVHFGHVIIHT 178 (333)
Q Consensus 153 EGlLstlpai~~~l~G~~aG~~l~~~ 178 (333)
-|++.++..+...+.....|.+..+.
T Consensus 45 ~g~i~s~~~l~~~i~~~~~G~l~Dr~ 70 (417)
T d1pv7a_ 45 TGIIFAAISLFSLLFQPLFGLLSDKL 70 (417)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37888999998888889999887654
No 9
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=5.27 E-value=6.8e+02 Score=19.75 Aligned_cols=24 Identities=4% Similarity=-0.204 Sum_probs=13.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhc
Q 019973 154 GLLSSVSSILSTIIGVHFGHVIIH 177 (333)
Q Consensus 154 GlLstlpai~~~l~G~~aG~~l~~ 177 (333)
+...++..+...+.....|.+..+
T Consensus 288 ~~~~~~~~~~~~~~~~~~g~~~~~ 311 (447)
T d1pw4a_ 288 SWAYFLYEYAGIPGTLLCGWMSDK 311 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcchhhhhhhhhhhhhhhhh
Confidence 455556555555555555555544
No 10
>d1mxga1 b.71.1.1 (A:362-435) Bacterial alpha-Amylase {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=4.92 E-value=35 Score=22.91 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=14.4
Q ss_pred CCCChhhhhhhhhcCCCCcc
Q 019973 98 PPCNAVGYIDRKVLGINHMY 117 (333)
Q Consensus 98 ~~~N~~~~iDr~vlg~~Hly 117 (333)
-.+|+.+|+|+.+=.....|
T Consensus 31 ytgnlggwvdk~v~~~gwv~ 50 (74)
T d1mxga1 31 YTGNLGGWVDKRVDSSGWVY 50 (74)
T ss_dssp SSCTTSSCCEEECCTTSEEE
T ss_pred hcCCccceeeeeeccCCeEE
Confidence 34799999999876544444
Done!