BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019975
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AG5|A Chain A, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG5|B Chain B, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG5|C Chain C, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG5|D Chain D, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
Length = 392
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 1 MQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLVIAS 44
+QR GQ+L+ P L L ++A+ ++ SE EHDL++ +
Sbjct: 315 VQRYGQALLDNPTYKLLLAQGEKDLEAITTLMNLSEAEHDLLVNA 359
>pdb|1BCC|E Chain E, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|E Chain E, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|E Chain E, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 196
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 23/140 (16%)
Query: 32 SKSEREHD--------LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE-----PGT 78
+KS RE D LV A LG + ++ +T + DVL + +
Sbjct: 22 TKSSRESDPSRKGFSYLVTAVTTLGVAYAAKNVVTQFVSSMSASADVLAMSKIEIKLSDI 81
Query: 79 PQGSSIISQMRSHILWMEKRKSRKYEARKSKDTN--KETSKDLVTLRSG--VHIVAPCPH 134
P+G ++ + R L++ R ++ + + + + ++ DL ++ V ++ C H
Sbjct: 82 PEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTH 141
Query: 135 EGRCPLENSGKY------CH 148
G P+ N+G + CH
Sbjct: 142 LGCVPIANAGDFGGYYCPCH 161
>pdb|3CWB|E Chain E, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|R Chain R, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|E Chain E, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|R Chain R, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|E Chain E, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|R Chain R, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|E Chain E, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|R Chain R, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|E Chain E, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|R Chain R, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|E Chain E, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|R Chain R, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|E Chain E, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|R Chain R, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|E Chain E, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|R Chain R, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|E Chain E, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|R Chain R, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|E Chain E, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|R Chain R, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|E Chain E, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|R Chain R, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|E Chain E, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|R Chain R, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|E Chain E, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|R Chain R, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 196
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 15/124 (12%)
Query: 40 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE-----PGTPQGSSIISQMRSHILW 94
LV A+ + + ++ +T + DVL L + P+G ++ + R L+
Sbjct: 38 LVTATACVATAYAAKNVVTQFISSLSASADVLALSKIEIKLSDIPEGKNVAFKWRGKPLF 97
Query: 95 MEKRKSRKYEARKSKDTNK----ETSKDLVTLRSGVHIVAPCPHEGRCPLENSGKY---- 146
+ R + D +K + D V V +V C H G P+ NSG +
Sbjct: 98 VRHRTQAEINQEAEVDVSKLRDPQHDLDRVKKPEWVILVGVCTHLGCVPIANSGDFGGYY 157
Query: 147 --CH 148
CH
Sbjct: 158 CPCH 161
>pdb|3B59|A Chain A, Crystal Structure Of The Mn(ii)-bound Glyoxalase From
Novosphingobium Aromaticivorans
pdb|3B59|B Chain B, Crystal Structure Of The Mn(ii)-bound Glyoxalase From
Novosphingobium Aromaticivorans
pdb|3B59|C Chain C, Crystal Structure Of The Mn(ii)-bound Glyoxalase From
Novosphingobium Aromaticivorans
pdb|3B59|D Chain D, Crystal Structure Of The Mn(ii)-bound Glyoxalase From
Novosphingobium Aromaticivorans
pdb|3B59|E Chain E, Crystal Structure Of The Mn(ii)-bound Glyoxalase From
Novosphingobium Aromaticivorans
pdb|3B59|F Chain F, Crystal Structure Of The Mn(ii)-bound Glyoxalase From
Novosphingobium Aromaticivorans
Length = 310
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 263 EETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRD 299
E + A GGG+G FSP +V+ DV + KRD
Sbjct: 95 EPAVLATPGGGYGFRFFSPDGLLFEVSSDVAKGAKRD 131
>pdb|2G7H|A Chain A, Structure Of An O6-Methylguanine Dna Methyltransferase
From Methanococcus Jannaschii (Mj1529)
Length = 167
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 175 DEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPC 234
+E F + F+ + R PL + + NPED + +++ AE++
Sbjct: 6 EEYFIGMIFKGNQLVRNTIPLRREEIFNFMDGEVVSNPEDEHLKVAEIILKLYFAEIDDK 65
Query: 235 KKEDLVNY--ESDEVQDDTVDSDKDQEKGEEET 265
K +L++Y E E +D KD E G+ T
Sbjct: 66 KVRELISYKLEVPEFTKKVLDIVKDIEFGKTLT 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,019,390
Number of Sequences: 62578
Number of extensions: 418143
Number of successful extensions: 1061
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1050
Number of HSP's gapped (non-prelim): 22
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)