Query 019975
Match_columns 333
No_of_seqs 156 out of 361
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 06:01:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09243 Rsm22: Mitochondrial 100.0 5.8E-60 1.3E-64 448.2 17.7 205 1-332 70-274 (274)
2 COG5459 Predicted rRNA methyla 100.0 2E-51 4.2E-56 394.3 6.0 213 37-333 185-403 (484)
3 KOG2539 Mitochondrial/chloropl 100.0 1.4E-44 2.9E-49 358.0 11.8 216 1-333 238-466 (491)
4 KOG2539 Mitochondrial/chloropl 99.1 5.3E-12 1.1E-16 126.6 -1.6 211 37-331 181-400 (491)
5 PLN02232 ubiquinone biosynthes 93.2 0.15 3.3E-06 44.5 5.0 47 32-81 39-87 (160)
6 PF01209 Ubie_methyltran: ubiE 93.2 0.046 1E-06 51.1 1.7 49 31-82 110-160 (233)
7 PF12847 Methyltransf_18: Meth 92.6 0.12 2.6E-06 41.1 3.2 41 35-75 68-111 (112)
8 PLN02233 ubiquinone biosynthes 91.0 0.92 2E-05 42.8 7.7 47 32-81 140-188 (261)
9 PF13489 Methyltransf_23: Meth 90.3 0.26 5.6E-06 41.4 3.0 45 33-80 74-120 (161)
10 PF08241 Methyltransf_11: Meth 89.5 0.4 8.7E-06 36.3 3.3 39 32-73 55-95 (95)
11 TIGR02752 MenG_heptapren 2-hep 88.6 0.69 1.5E-05 42.0 4.7 45 34-81 111-157 (231)
12 PF05401 NodS: Nodulation prot 88.1 0.68 1.5E-05 42.7 4.3 53 33-85 102-164 (201)
13 TIGR00740 methyltransferase, p 87.9 1.9 4.2E-05 39.6 7.3 41 37-78 122-164 (239)
14 COG2226 UbiE Methylase involve 86.9 1 2.2E-05 42.5 4.8 76 1-85 87-166 (238)
15 PRK15451 tRNA cmo(5)U34 methyl 86.8 1.1 2.3E-05 41.9 4.9 44 37-81 125-170 (247)
16 PTZ00098 phosphoethanolamine N 86.4 1.7 3.6E-05 41.1 6.1 45 34-79 114-160 (263)
17 PF08242 Methyltransf_12: Meth 86.0 0.64 1.4E-05 36.4 2.6 33 36-71 65-99 (99)
18 PF01739 CheR: CheR methyltran 85.9 0.46 1E-05 43.4 1.9 47 25-73 125-173 (196)
19 TIGR03587 Pse_Me-ase pseudamin 85.1 1.4 3E-05 40.2 4.7 45 34-79 102-146 (204)
20 PRK12335 tellurite resistance 82.5 1.9 4.1E-05 41.2 4.6 42 35-77 182-225 (287)
21 TIGR00477 tehB tellurite resis 81.7 2.5 5.5E-05 37.9 4.9 39 36-75 93-133 (195)
22 PRK11207 tellurite resistance 81.7 2.5 5.5E-05 38.0 4.9 40 35-75 93-134 (197)
23 smart00138 MeTrc Methyltransfe 81.4 1.8 3.9E-05 41.1 4.0 41 34-75 200-242 (264)
24 PRK06202 hypothetical protein; 81.1 5.4 0.00012 36.5 6.9 45 35-80 127-171 (232)
25 PRK10611 chemotaxis methyltran 80.1 1.5 3.3E-05 42.5 3.0 38 35-73 221-260 (287)
26 PLN02490 MPBQ/MSBQ methyltrans 78.8 4.1 8.8E-05 40.5 5.6 43 35-80 176-220 (340)
27 KOG4300 Predicted methyltransf 77.4 3.1 6.6E-05 39.1 4.0 46 34-80 142-187 (252)
28 COG2227 UbiG 2-polyprenyl-3-me 77.3 2.8 6.1E-05 39.8 3.8 40 32-74 119-160 (243)
29 PF11968 DUF3321: Putative met 76.7 3.8 8.2E-05 38.4 4.4 42 35-76 102-150 (219)
30 TIGR01934 MenG_MenH_UbiE ubiqu 75.6 5.7 0.00012 35.2 5.2 44 35-81 104-149 (223)
31 PRK11036 putative S-adenosyl-L 74.4 3.9 8.5E-05 38.1 4.0 40 35-77 110-151 (255)
32 PRK00216 ubiE ubiquinone/menaq 73.3 8.8 0.00019 34.4 5.9 44 35-81 119-164 (239)
33 PLN02336 phosphoethanolamine N 72.9 4.7 0.0001 41.0 4.5 43 34-77 100-144 (475)
34 PRK08317 hypothetical protein; 70.8 7.7 0.00017 34.5 4.9 40 35-77 85-126 (241)
35 PF00891 Methyltransf_2: O-met 69.6 5.8 0.00013 36.4 3.9 39 38-77 159-201 (241)
36 PRK14103 trans-aconitate 2-met 66.9 9 0.0002 35.6 4.6 41 35-78 87-129 (255)
37 PF03848 TehB: Tellurite resis 66.1 7.7 0.00017 35.5 3.9 40 35-75 92-133 (192)
38 COG1352 CheR Methylase of chem 65.7 6.5 0.00014 37.8 3.5 39 34-73 199-239 (268)
39 PRK05785 hypothetical protein; 64.1 12 0.00026 34.5 4.8 48 32-82 105-152 (226)
40 smart00828 PKS_MT Methyltransf 63.6 9 0.0002 34.5 3.9 39 36-77 66-106 (224)
41 TIGR02072 BioC biotin biosynth 62.3 11 0.00023 33.7 4.1 44 34-80 95-140 (240)
42 PRK11873 arsM arsenite S-adeno 61.6 12 0.00027 34.9 4.6 40 35-77 144-185 (272)
43 PLN02585 magnesium protoporphy 59.8 25 0.00054 34.5 6.4 40 35-75 210-249 (315)
44 PLN02244 tocopherol O-methyltr 58.8 19 0.00042 35.3 5.5 41 34-77 183-225 (340)
45 PLN03075 nicotianamine synthas 57.7 15 0.00032 35.9 4.4 37 35-73 193-231 (296)
46 PRK04457 spermidine synthase; 57.1 35 0.00077 32.3 6.8 44 35-78 134-180 (262)
47 cd02440 AdoMet_MTases S-adenos 55.8 22 0.00049 25.9 4.3 38 35-74 64-103 (107)
48 PRK05134 bifunctional 3-demeth 54.3 18 0.00038 32.8 4.1 40 35-77 112-153 (233)
49 PF13649 Methyltransf_25: Meth 54.1 14 0.00031 28.9 3.1 34 33-67 63-97 (101)
50 TIGR00537 hemK_rel_arch HemK-r 53.9 38 0.00082 29.5 6.1 50 35-84 80-149 (179)
51 PRK07580 Mg-protoporphyrin IX 53.1 24 0.00053 31.6 4.8 43 35-78 125-168 (230)
52 PF05891 Methyltransf_PK: AdoM 52.7 10 0.00022 35.6 2.2 47 35-82 120-168 (218)
53 TIGR02716 C20_methyl_CrtF C-20 51.3 24 0.00052 33.7 4.7 39 37-76 215-255 (306)
54 PLN02336 phosphoethanolamine N 50.1 25 0.00054 35.8 4.9 41 35-78 330-372 (475)
55 PF13847 Methyltransf_31: Meth 49.3 17 0.00037 30.7 3.0 39 36-77 72-112 (152)
56 KOG2361 Predicted methyltransf 48.7 32 0.00068 33.1 4.9 47 32-79 139-187 (264)
57 PLN02396 hexaprenyldihydroxybe 48.1 20 0.00043 35.3 3.6 41 34-77 195-237 (322)
58 KOG3178 Hydroxyindole-O-methyl 47.1 34 0.00074 34.1 5.1 43 37-80 236-280 (342)
59 PRK00107 gidB 16S rRNA methylt 47.0 40 0.00087 30.4 5.2 37 35-78 110-148 (187)
60 PRK01683 trans-aconitate 2-met 45.2 39 0.00085 31.1 5.0 41 36-79 92-134 (258)
61 PRK10258 biotin biosynthesis p 39.5 45 0.00097 30.7 4.4 43 34-79 100-144 (251)
62 TIGR03840 TMPT_Se_Te thiopurin 38.2 49 0.0011 30.4 4.4 38 36-74 112-151 (213)
63 PRK08287 cobalt-precorrin-6Y C 37.0 73 0.0016 27.9 5.2 38 36-79 96-135 (187)
64 TIGR01983 UbiG ubiquinone bios 36.5 42 0.00091 30.0 3.6 39 36-77 111-151 (224)
65 TIGR00452 methyltransferase, p 36.3 44 0.00094 32.8 3.9 37 36-75 187-225 (314)
66 PF01234 NNMT_PNMT_TEMT: NNMT/ 35.6 20 0.00044 34.2 1.5 44 37-80 158-204 (256)
67 PRK00121 trmB tRNA (guanine-N( 34.1 1E+02 0.0022 27.7 5.8 42 35-76 109-157 (202)
68 PRK06922 hypothetical protein; 32.2 58 0.0013 35.5 4.3 42 35-76 485-538 (677)
69 TIGR02021 BchM-ChlM magnesium 32.1 1.1E+02 0.0025 27.4 5.8 33 36-69 118-150 (219)
70 PRK11705 cyclopropane fatty ac 31.0 81 0.0018 31.6 5.0 45 35-80 226-272 (383)
71 TIGR00438 rrmJ cell division p 30.3 1E+02 0.0022 27.1 5.0 56 35-91 96-162 (188)
72 PF05219 DREV: DREV methyltran 30.0 69 0.0015 30.9 4.0 42 34-78 148-200 (265)
73 TIGR02081 metW methionine bios 28.3 81 0.0017 27.9 4.0 30 35-67 73-102 (194)
74 TIGR01352 tonB_Cterm TonB fami 26.1 1.1E+02 0.0023 22.3 3.7 39 284-327 8-51 (74)
75 KOG2198 tRNA cytosine-5-methyl 26.1 36 0.00079 34.3 1.5 13 283-295 153-165 (375)
76 PRK13942 protein-L-isoaspartat 25.0 78 0.0017 28.7 3.4 34 35-75 143-176 (212)
77 COG3963 Phospholipid N-methylt 23.9 1.5E+02 0.0033 27.2 4.8 43 34-77 114-158 (194)
78 TIGR02469 CbiT precorrin-6Y C5 23.4 86 0.0019 24.6 3.0 32 36-73 87-120 (124)
79 PRK13256 thiopurine S-methyltr 22.8 1.2E+02 0.0027 28.3 4.3 39 35-74 122-162 (226)
80 PRK01581 speE spermidine synth 22.5 4.1E+02 0.009 27.0 8.1 61 15-80 206-272 (374)
81 TIGR00406 prmA ribosomal prote 22.2 1.3E+02 0.0029 28.6 4.5 42 35-82 223-266 (288)
82 PRK13255 thiopurine S-methyltr 22.1 1.2E+02 0.0026 27.9 4.0 37 36-73 115-153 (218)
83 TIGR00080 pimt protein-L-isoas 21.2 1E+02 0.0022 27.8 3.3 31 35-74 144-176 (215)
84 PRK14967 putative methyltransf 21.2 3.1E+02 0.0066 24.8 6.5 21 59-79 141-163 (223)
85 PRK15068 tRNA mo(5)U34 methylt 20.3 1.1E+02 0.0025 29.8 3.7 37 35-74 187-225 (322)
No 1
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=100.00 E-value=5.8e-60 Score=448.20 Aligned_cols=205 Identities=43% Similarity=0.761 Sum_probs=172.4
Q ss_pred ChHHhhhhhcCCCCCCcccchhhhhhhhhhcccCCCcccEEEecccccCCCCchhHHHHHHHHHHhcCCeEEEEeCCChh
Q 019975 1 MQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 80 (333)
Q Consensus 1 m~~~~~~ll~~~~~~p~v~~~~~~~~l~~~~~~~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~~g~LVLVEpGtp~ 80 (333)
|+++|+.|+++............ .... ..+-...||||+||+|+||++ .+|.++|++||+++.++|||||||||.
T Consensus 70 ~~~l~~~l~~~~~~~~~~~~~~~--~~~~--~~~~~~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~~LVlVEpGt~~ 144 (274)
T PF09243_consen 70 MLELAKRLLRAGPNNRNAEWRRV--LYRD--FLPFPPDDLVIASYVLNELPS-AARAELVRSLWNKTAPVLVLVEPGTPA 144 (274)
T ss_pred HHHHHHHHHhcccccccchhhhh--hhcc--cccCCCCcEEEEehhhhcCCc-hHHHHHHHHHHHhccCcEEEEcCCChH
Confidence 78899999998766543222111 1111 111224499999999999998 999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhcccccccccchhhhhccCCcEEEccCCCCCCCcCCCCCCceeeeeccccChhHH
Q 019975 81 GSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQR 160 (333)
Q Consensus 81 Gf~~I~~AR~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvAPCpH~~~CPm~~~~~wChF~qr~~Rp~~~r 160 (333)
||+.|++||++|+ ..++||||||||++.|||....+||||+|+++|+++++
T Consensus 145 Gf~~i~~aR~~l~-----------------------------~~~~~v~APCph~~~CP~~~~~~wChf~~r~~~~~~~~ 195 (274)
T PF09243_consen 145 GFRRIAEARDQLL-----------------------------EKGAHVVAPCPHDGPCPLLASEDWCHFSQRVERSPFHR 195 (274)
T ss_pred HHHHHHHHHHHHh-----------------------------hCCCceECCCccCCCCCCCCCCCcccceeeeccchhhh
Confidence 9999999999996 35899999999999999988779999999999999887
Q ss_pred HhhhccCCCCCCCccceeEEEEEEeCCCCCCCCCCCCccchhhHhhhccCCCccchhhHHHHHHhhhhcccccccccccc
Q 019975 161 AYKRSKSEPLRGFEDEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLV 240 (333)
Q Consensus 161 ~~k~~~g~~~r~~ed~kFSYvvlrKg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (333)
..+ +.. .++|++|||||+.+|+++.
T Consensus 196 ~~k---~~~-~~~e~ekfSYl~~~~~~~~--------------------------------------------------- 220 (274)
T PF09243_consen 196 LAK---SAG-LPYEDEKFSYLAKGRGPRA--------------------------------------------------- 220 (274)
T ss_pred hcc---ccc-CCccccceeeeeecccccc---------------------------------------------------
Confidence 665 222 4789999999776665421
Q ss_pred cccccccccCcCCCcccccccccccccccCCCCCcccccCceeeCCeEEEeeccCCcCCCCCCCeeEEEEeccCCchhhh
Q 019975 241 NYESDEVQDDTVDSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHR 320 (333)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wpRiI~pPlKR~gHV~ldvCtp~~~~~~~G~ler~~v~Ks~~kq~Y~ 320 (333)
..|||||+||+||+|||+|||||| +|+|+|+||+||+| ++||
T Consensus 221 -------------------------------~~~~Rii~~p~~~~~hv~~~~C~~------~G~l~~~~v~K~~g-~~y~ 262 (274)
T PF09243_consen 221 -------------------------------PAWPRIIRPPLKRKGHVICDLCTP------DGQLERVVVTKRHG-ELYR 262 (274)
T ss_pred -------------------------------cccchhcchhhccCCcEEEEEECC------CCCEEEEEEcccch-HHHH
Confidence 129999999999999999999998 99999999999888 8999
Q ss_pred hhhhcCCCCCCC
Q 019975 321 LAKKSLWGDLWP 332 (333)
Q Consensus 321 dARKs~WGDLwp 332 (333)
+|||+.|||+||
T Consensus 263 ~aRk~~wGD~~p 274 (274)
T PF09243_consen 263 CARKSKWGDLWP 274 (274)
T ss_pred HHHhccccCCCC
Confidence 999999999998
No 2
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-51 Score=394.33 Aligned_cols=213 Identities=29% Similarity=0.480 Sum_probs=158.3
Q ss_pred cccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCCChhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccccc
Q 019975 37 EHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNKE 114 (333)
Q Consensus 37 ~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpGtp~Gf~~I~~AR~~lL~~~~~~~~~~~~~~~~~~~~~ 114 (333)
.|+|||+++-|.+..++..-...|+.||+.+ ||.|||||+|||+||+.|.+||+++|..++..
T Consensus 185 ~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~~ll~~~~~~--------------- 249 (484)
T COG5459 185 LYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQILLAPGNFP--------------- 249 (484)
T ss_pred eeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHHHHhcCCCCc---------------
Confidence 5666666666666555666667999999996 69999999999999999999999999643221
Q ss_pred cchhhhhccCCcEEEccCCCCCCCcCCCC----CCceeeeeccccChhHHHhhhccCCCCCCCccceeEEEEEEeCCCCC
Q 019975 115 TSKDLVTLRSGVHIVAPCPHEGRCPLENS----GKYCHFVQRLQRTTSQRAYKRSKSEPLRGFEDEKFSFVAFRRGERPR 190 (333)
Q Consensus 115 ~~~~~~~~~~~~~VvAPCpH~~~CPm~~~----~~wChF~qr~~Rp~~~r~~k~~~g~~~r~~ed~kFSYvvlrKg~~~~ 190 (333)
+ .....+||+|||||++.||+... .+||||+|++-|++|.+.++.-. -.+..+...|||++|+|+...
T Consensus 250 ~-----e~~~~ahiiAPCPH~~~CPl~v~ng~~~~~C~F~q~v~rs~fs~~~~~Rl--hr~s~D~s~~~~~~lkr~~~r- 321 (484)
T COG5459 250 D-----EFNYFAHIIAPCPHQRKCPLQVPNGKDLDWCHFSQRVARSKFSIELKKRL--HRTSKDGSQGNASRLKRRAGR- 321 (484)
T ss_pred c-----ccccceeeeccCCCCCCCCccCCCCccccccchhHhhccCcchhHHHHHH--HhhhccccccchhhhhhccCC-
Confidence 0 13567999999999999999753 48999999999999877765311 012445678999999987421
Q ss_pred CCCCCCCccchhhHhhhccCCCccchhhHHHHHHhhhhcccccccccccccccccccccCcCCCcccccccccccccccC
Q 019975 191 ERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNYESDEVQDDTVDSDKDQEKGEEETIPADL 270 (333)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (333)
+|. -+ .+++.+|++... +.....+-
T Consensus 322 -p~e-------~~------------------~er~~~DE~~l~-----------------------------~~~v~~pt 346 (484)
T COG5459 322 -PWE-------IL------------------FERSHKDEKFLK-----------------------------EAAVRRPT 346 (484)
T ss_pred -Chh-------hh------------------hhhccchHHHHH-----------------------------HHHhcCcc
Confidence 221 00 112222221100 00000111
Q ss_pred CCCCcccccCceeeCCeEEEeeccCCcCCCCCCCeeEEEEeccCCchhhhhhhhcCCCCCCCC
Q 019975 271 GGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLWPF 333 (333)
Q Consensus 271 ~~~wpRiI~pPlKR~gHV~ldvCtp~~~~~~~G~ler~~v~Ks~~kq~Y~dARKs~WGDLwp~ 333 (333)
..+|||||+||+||+|||+||+|.+ +|++++|+||||+||++||.||||.||||||.
T Consensus 347 ~~~wpRII~pP~kr~GhV~idlC~~------dg~le~~lvtKs~gk~~yrlARks~wGDlfas 403 (484)
T COG5459 347 ANSWPRIIAPPVKRKGHVMIDLCAP------DGELEEWLVTKSDGKQIYRLARKSDWGDLFAS 403 (484)
T ss_pred ccccchhcCCccCCCCeEEEeecCC------cchhhhhcccccccHHHHHHHHhhccchhhhh
Confidence 4679999999999999999999998 99999999999999999999999999999984
No 3
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-44 Score=357.99 Aligned_cols=216 Identities=31% Similarity=0.538 Sum_probs=174.9
Q ss_pred ChHHhhhhhcC--CCCCCcccc-hhhhhhhhhhcccCCCcccEEEecccccCCCCchhHHHHHHHHHHhcC---CeEEEE
Q 019975 1 MQRAGQSLMQG--PKDLPLIHS-YNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTR---DVLVLV 74 (333)
Q Consensus 1 m~~~~~~ll~~--~~~~p~v~~-~~~~~~l~~~~~~~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~~---g~LVLV 74 (333)
|+..+++.|.+ --+-|+|+. +++++.++.. ....|||||++|+|.|+.+...|..++++||.+++ ++||||
T Consensus 238 ~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~---~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViI 314 (491)
T KOG2539|consen 238 MLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPID---IKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVII 314 (491)
T ss_pred HHHHHHHhhcChhhcCchhccccchhcccCCCC---cccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEE
Confidence 56667777777 455788998 7878888542 25579999999999999999999999999999974 499999
Q ss_pred eCCChhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccccccchhhhhccCCcEEEccCCCCCCCcCCCCCC---ceeeee
Q 019975 75 EPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGK---YCHFVQ 151 (333)
Q Consensus 75 EpGtp~Gf~~I~~AR~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvAPCpH~~~CPm~~~~~---wChF~q 151 (333)
|+|++.||+.|++||+.+|..+.. .++ +...++|||||||+..||+...+. .|+|.+
T Consensus 315 e~g~~~g~e~l~eaR~~~l~~~~~------------------vd~--~~~~~~vlapcPh~l~cPl~~d~~~~~~C~f~~ 374 (491)
T KOG2539|consen 315 EKGTTMGLELLTEARQNLLDQEEE------------------VDY--EDVTGPVLAPCPHDLRCPLLRDSAVIIVCTFDA 374 (491)
T ss_pred ecCCccchhhHHHHHHhcccchhc------------------CCc--cccccceecCCCcccCCccccCCCcccccccch
Confidence 999999999999999999863211 111 235689999999999999976433 599999
Q ss_pred ccccChhHHHhhhccCCCCCCCcc---ceeEEEEEEeCCCCCCCCCCCCccchhhHhhhccCCCccchhhHHHHHHhhhh
Q 019975 152 RLQRTTSQRAYKRSKSEPLRGFED---EKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAE 228 (333)
Q Consensus 152 r~~Rp~~~r~~k~~~g~~~r~~ed---~kFSYvvlrKg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (333)
++.+-+. .|..+ ..+. .+|||+|+.+|.+..
T Consensus 375 ~~~~l~~-------s~~~~-~~e~~r~~~~sy~I~e~s~~~~-------------------------------------- 408 (491)
T KOG2539|consen 375 RYRPLPK-------SGGKL-EDEEDRKSAYSYLILEESSRQS-------------------------------------- 408 (491)
T ss_pred hcccccc-------CCCcC-chhhhhhhhhHHHHHhhccccc--------------------------------------
Confidence 9997541 11122 2222 259999988876421
Q ss_pred cccccccccccccccccccccCcCCCcccccccccccccccCCCCCcccccCceeeCCeEEEeeccCCcCCCCCCCeeEE
Q 019975 229 AEVEPCKKEDLVNYESDEVQDDTVDSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHL 308 (333)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wpRiI~pPlKR~gHV~ldvCtp~~~~~~~G~ler~ 308 (333)
+.+|||||+||+||+|||+|||||| +|.++||
T Consensus 409 ------------------------------------------~~~wpRIi~p~~kr~~hv~~dlC~p------~g~~q~~ 440 (491)
T KOG2539|consen 409 ------------------------------------------TSSWPRIIKPPLKRGGHVTCDLCTP------NGPLQRR 440 (491)
T ss_pred ------------------------------------------cCCCcccccCccccCCeeEEecCCC------CCCeeEE
Confidence 2369999999999999999999998 8999999
Q ss_pred EEeccCCc-hhhhhhhhcCCCCCCCC
Q 019975 309 VFTRSKNP-TLHRLAKKSLWGDLWPF 333 (333)
Q Consensus 309 ~v~Ks~~k-q~Y~dARKs~WGDLwp~ 333 (333)
|+|||+++ .+|.+|||+.|||||||
T Consensus 441 ~~Tkskhg~dlys~ar~s~wgdl~pl 466 (491)
T KOG2539|consen 441 VLTKSKHGKDLYSCARKSRWGDLLPL 466 (491)
T ss_pred EEecccccHHHHHHhhhhhccccccc
Confidence 99999887 69999999999999996
No 4
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=5.3e-12 Score=126.59 Aligned_cols=211 Identities=19% Similarity=0.212 Sum_probs=136.1
Q ss_pred cccEEEecccccCCCCchhHHHHHHHHHHhc---CCeEEEEeCCChhhhHHHHHHHHHHHHHHhhhhhhhhhhccccccc
Q 019975 37 EHDLVIASYVLGEVPSLQDRITIVRQLWDLT---RDVLVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNK 113 (333)
Q Consensus 37 ~~DLVias~~L~EL~s~~~R~~~v~~LW~~~---~g~LVLVEpGtp~Gf~~I~~AR~~lL~~~~~~~~~~~~~~~~~~~~ 113 (333)
.|-+|+.++.+.+..+++.|-+++..+|+-+ ..++++++++|..+|-+|.+.|.++...+.- .+
T Consensus 181 gYa~v~~~~~e~~~~~p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~--lr----------- 247 (491)
T KOG2539|consen 181 GYALVTRSNKEINMRSPKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKN--LR----------- 247 (491)
T ss_pred chHHHHHHHHHHhhcCcccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHh--hc-----------
Confidence 6777888888777766777777777777764 3477777788888887777777776642210 00
Q ss_pred ccchhhhhccCCcEEEcc-CCCCCCCcCCCCC----CceeeeeccccChhHHHhhhccCCCC-CCCccceeEEEEEEeCC
Q 019975 114 ETSKDLVTLRSGVHIVAP-CPHEGRCPLENSG----KYCHFVQRLQRTTSQRAYKRSKSEPL-RGFEDEKFSFVAFRRGE 187 (333)
Q Consensus 114 ~~~~~~~~~~~~~~VvAP-CpH~~~CPm~~~~----~wChF~qr~~Rp~~~r~~k~~~g~~~-r~~ed~kFSYvvlrKg~ 187 (333)
++ ..-+.+++++ |+|.+.||...+. ..|+|.+..--.++.|..-.. .+ +......|+||+|.+|.
T Consensus 248 -~~-----~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~---s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 248 -DG-----SHIGEPIVRKLVFHRQRLPIDIKNGYDLVICAHKLHELGSKFSRLDVPE---SLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred -Ch-----hhcCchhccccchhcccCCCCcccceeeEEeeeeeeccCCchhhhhhhH---HHHHhccCCCceEEEEecCC
Confidence 00 1346789999 9999999997653 478888765443443321100 00 11223368899999886
Q ss_pred CCCCCCCCCCccchhhHhhhccCCCccchhhHHHHHHhhhhcccccccccccccccccccccCcCCCccccccccccccc
Q 019975 188 RPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNYESDEVQDDTVDSDKDQEKGEEETIP 267 (333)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (333)
. ++++.+.++..-.-+++.+++| +. -.
T Consensus 319 ~---------~g~e~l~eaR~~~l~~~~~vd~-----------------------~~---------------------~~ 345 (491)
T KOG2539|consen 319 T---------MGLELLTEARQNLLDQEEEVDY-----------------------ED---------------------VT 345 (491)
T ss_pred c---------cchhhHHHHHHhcccchhcCCc-----------------------cc---------------------cc
Confidence 3 3344444321100011111111 00 00
Q ss_pred ccCCCCCcccccCceeeCCeEEEeeccCCcCCCCCCCeeEEEEeccCCchhhhhhhhcCCCCCC
Q 019975 268 ADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLW 331 (333)
Q Consensus 268 ~~~~~~wpRiI~pPlKR~gHV~ldvCtp~~~~~~~G~ler~~v~Ks~~kq~Y~dARKs~WGDLw 331 (333)
...-..||+.+..|++|.+||+. +|+- +-.+++ +++|.++.+|+.+||+.|+++.
T Consensus 346 ~~vlapcPh~l~cPl~~d~~~~~-~C~f------~~~~~~--l~~s~~~~~~e~~r~~~~sy~I 400 (491)
T KOG2539|consen 346 GPVLAPCPHDLRCPLLRDSAVII-VCTF------DARYRP--LPKSGGKLEDEEDRKSAYSYLI 400 (491)
T ss_pred cceecCCCcccCCccccCCCccc-cccc------chhccc--cccCCCcCchhhhhhhhhHHHH
Confidence 11123699999999999999999 9995 777888 8999999999999999999875
No 5
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=93.21 E-value=0.15 Score=44.49 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=38.5
Q ss_pred ccCCCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCCChhh
Q 019975 32 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPGTPQG 81 (333)
Q Consensus 32 ~~~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpGtp~G 81 (333)
+-....||+|+++++|..++ ++.++++++.+.+ ||.|+++|-+.+..
T Consensus 39 p~~~~~fD~v~~~~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d~~~~~~ 87 (160)
T PLN02232 39 PFDDCEFDAVTMGYGLRNVV---DRLRAMKEMYRVLKPGSRVSILDFNKSNQ 87 (160)
T ss_pred CCCCCCeeEEEecchhhcCC---CHHHHHHHHHHHcCcCeEEEEEECCCCCh
Confidence 44566899999999998885 4678888888864 99999999998764
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=93.16 E-value=0.046 Score=51.11 Aligned_cols=49 Identities=22% Similarity=0.432 Sum_probs=35.5
Q ss_pred cccCCCcccEEEecccccCCCCchhHHHHHHHHHHh--cCCeEEEEeCCChhhh
Q 019975 31 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGS 82 (333)
Q Consensus 31 ~~~~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~--~~g~LVLVEpGtp~Gf 82 (333)
.+-....||.|+++|.|-+++. +...++.+.+- +||.|+++|-+.|.+.
T Consensus 110 lp~~d~sfD~v~~~fglrn~~d---~~~~l~E~~RVLkPGG~l~ile~~~p~~~ 160 (233)
T PF01209_consen 110 LPFPDNSFDAVTCSFGLRNFPD---RERALREMYRVLKPGGRLVILEFSKPRNP 160 (233)
T ss_dssp --S-TT-EEEEEEES-GGG-SS---HHHHHHHHHHHEEEEEEEEEEEEEB-SSH
T ss_pred hcCCCCceeEEEHHhhHHhhCC---HHHHHHHHHHHcCCCeEEEEeeccCCCCc
Confidence 3445679999999999999974 45678888886 4999999999999874
No 7
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=92.56 E-value=0.12 Score=41.14 Aligned_cols=41 Identities=27% Similarity=0.290 Sum_probs=33.5
Q ss_pred CCcccEEEecc-cccCCCCchhHHHHHHHHHHhc--CCeEEEEe
Q 019975 35 EREHDLVIASY-VLGEVPSLQDRITIVRQLWDLT--RDVLVLVE 75 (333)
Q Consensus 35 ~~~~DLVias~-~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVE 75 (333)
..+||+|++.. ++..+....++.++++.+++.+ +|.|||-+
T Consensus 68 ~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 68 LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 44799999999 6666665578889999999985 88888865
No 8
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=90.97 E-value=0.92 Score=42.83 Aligned_cols=47 Identities=13% Similarity=0.258 Sum_probs=38.4
Q ss_pred ccCCCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCCChhh
Q 019975 32 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPGTPQG 81 (333)
Q Consensus 32 ~~~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpGtp~G 81 (333)
+-+...||+|+++++|..++ ++..+++++++.+ ||.|+++|-+.+..
T Consensus 140 p~~~~sfD~V~~~~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d~~~~~~ 188 (261)
T PLN02233 140 PFDDCYFDAITMGYGLRNVV---DRLKAMQEMYRVLKPGSRVSILDFNKSTQ 188 (261)
T ss_pred CCCCCCEeEEEEecccccCC---CHHHHHHHHHHHcCcCcEEEEEECCCCCc
Confidence 33456899999999999886 3567888888874 99999999988765
No 9
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=90.32 E-value=0.26 Score=41.44 Aligned_cols=45 Identities=27% Similarity=0.437 Sum_probs=38.4
Q ss_pred cCCCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCCChh
Q 019975 33 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPGTPQ 80 (333)
Q Consensus 33 ~~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpGtp~ 80 (333)
.+.+.||+|++.++|.-++ ....+++.+++.+ +|+|++..+....
T Consensus 74 ~~~~~fD~i~~~~~l~~~~---d~~~~l~~l~~~LkpgG~l~~~~~~~~~ 120 (161)
T PF13489_consen 74 FPDGSFDLIICNDVLEHLP---DPEEFLKELSRLLKPGGYLVISDPNRDD 120 (161)
T ss_dssp CHSSSEEEEEEESSGGGSS---HHHHHHHHHHHCEEEEEEEEEEEEBTTS
T ss_pred ccccchhhHhhHHHHhhcc---cHHHHHHHHHHhcCCCCEEEEEEcCCcc
Confidence 4467999999999999998 3678999999975 8999999998654
No 10
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=89.48 E-value=0.4 Score=36.28 Aligned_cols=39 Identities=21% Similarity=0.386 Sum_probs=31.5
Q ss_pred ccCCCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEE
Q 019975 32 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVL 73 (333)
Q Consensus 32 ~~~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVL 73 (333)
+-+...||+|++.+++..+ .++..+++.+++.+ +|.||+
T Consensus 55 ~~~~~sfD~v~~~~~~~~~---~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 55 PFPDNSFDVVFSNSVLHHL---EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SS-TT-EEEEEEESHGGGS---SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccccccccceeec---cCHHHHHHHHHHHcCcCeEEeC
Confidence 4446799999999999999 66788999999975 888876
No 11
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=88.58 E-value=0.69 Score=42.04 Aligned_cols=45 Identities=20% Similarity=0.434 Sum_probs=35.2
Q ss_pred CCCcccEEEecccccCCCCchhHHHHHHHHHHh--cCCeEEEEeCCChhh
Q 019975 34 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQG 81 (333)
Q Consensus 34 ~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~--~~g~LVLVEpGtp~G 81 (333)
...+||+|+++++|..++. ..++++++++. .||.||++|++.+.-
T Consensus 111 ~~~~fD~V~~~~~l~~~~~---~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 157 (231)
T TIGR02752 111 DDNSFDYVTIGFGLRNVPD---YMQVLREMYRVVKPGGKVVCLETSQPTI 157 (231)
T ss_pred CCCCccEEEEecccccCCC---HHHHHHHHHHHcCcCeEEEEEECCCCCC
Confidence 3568999999999887764 34677888776 499999999987653
No 12
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=88.12 E-value=0.68 Score=42.73 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=36.9
Q ss_pred cCCCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeC--------CChhhhHHH
Q 019975 33 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEP--------GTPQGSSII 85 (333)
Q Consensus 33 ~~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEp--------Gtp~Gf~~I 85 (333)
.+..+|||||+|=+|-=|...++...+++.+...+ +|.||+--- |.+.|-+.|
T Consensus 102 ~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv 164 (201)
T PF05401_consen 102 WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETV 164 (201)
T ss_dssp --SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHH
T ss_pred CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHH
Confidence 35679999999999999976677888999999985 899998543 444555555
No 13
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=87.94 E-value=1.9 Score=39.59 Aligned_cols=41 Identities=29% Similarity=0.481 Sum_probs=34.9
Q ss_pred cccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCCC
Q 019975 37 EHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPGT 78 (333)
Q Consensus 37 ~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpGt 78 (333)
.+|+|+++++|.-++ ..++..+++++.+.+ ||.|++.|+-.
T Consensus 122 ~~d~v~~~~~l~~~~-~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 122 NASMVILNFTLQFLP-PEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred CCCEEeeecchhhCC-HHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 589999999998886 566888999999975 99999999743
No 14
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=86.88 E-value=1 Score=42.55 Aligned_cols=76 Identities=13% Similarity=0.273 Sum_probs=52.7
Q ss_pred ChHHhhhhhcCC--CCCCcccchhhhhhhhhhcccCCCcccEEEecccccCCCCchhHHHHHHHHHHh--cCCeEEEEeC
Q 019975 1 MQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 76 (333)
Q Consensus 1 m~~~~~~ll~~~--~~~p~v~~~~~~~~l~~~~~~~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~--~~g~LVLVEp 76 (333)
|++.|+.=+.+. .++-+|. ..+...+=+...||+|+++|.|-.++ +...+++.+.+= ++|.++++|-
T Consensus 87 ML~~a~~k~~~~~~~~i~fv~------~dAe~LPf~D~sFD~vt~~fglrnv~---d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 87 MLEVAREKLKKKGVQNVEFVV------GDAENLPFPDNSFDAVTISFGLRNVT---DIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred HHHHHHHHhhccCccceEEEE------echhhCCCCCCccCEEEeeehhhcCC---CHHHHHHHHHHhhcCCeEEEEEEc
Confidence 566666555542 2233333 22333456677999999999999997 356788888885 5999999999
Q ss_pred CChhhhHHH
Q 019975 77 GTPQGSSII 85 (333)
Q Consensus 77 Gtp~Gf~~I 85 (333)
+.|.....-
T Consensus 158 ~~p~~~~~~ 166 (238)
T COG2226 158 SKPDNPVLR 166 (238)
T ss_pred CCCCchhhH
Confidence 999765433
No 15
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=86.79 E-value=1.1 Score=41.87 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=36.5
Q ss_pred cccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCCChhh
Q 019975 37 EHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPGTPQG 81 (333)
Q Consensus 37 ~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpGtp~G 81 (333)
.+|+||+.++|.-++ ..++..+++++++.+ ||.||+.|.-...+
T Consensus 125 ~~D~vv~~~~l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~ 170 (247)
T PRK15451 125 NASMVVLNFTLQFLE-PSERQALLDKIYQGLNPGGALVLSEKFSFED 170 (247)
T ss_pred CCCEEehhhHHHhCC-HHHHHHHHHHHHHhcCCCCEEEEEEecCCCc
Confidence 599999999999886 566889999999985 99999999644433
No 16
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=86.41 E-value=1.7 Score=41.14 Aligned_cols=45 Identities=9% Similarity=0.253 Sum_probs=36.3
Q ss_pred CCCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCCCh
Q 019975 34 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPGTP 79 (333)
Q Consensus 34 ~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpGtp 79 (333)
+...||+|++.+++..++ ..++..+++++.+.+ ||.||++|....
T Consensus 114 ~~~~FD~V~s~~~l~h~~-~~d~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 114 PENTFDMIYSRDAILHLS-YADKKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred CCCCeEEEEEhhhHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 356899999999888775 456788999998874 999999997543
No 17
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=86.03 E-value=0.64 Score=36.43 Aligned_cols=33 Identities=33% Similarity=0.554 Sum_probs=20.0
Q ss_pred CcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeE
Q 019975 36 REHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVL 71 (333)
Q Consensus 36 ~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~L 71 (333)
++||+|+++++|..+ ....++++++.+.+ ||.|
T Consensus 65 ~~fD~V~~~~vl~~l---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASNVLHHL---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---SEEEEE-TTS-----S-HHHHHHHHTTT-TSS-EE
T ss_pred cccceehhhhhHhhh---hhHHHHHHHHHHHcCCCCCC
Confidence 599999999999999 44568888888874 6765
No 18
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=85.91 E-value=0.46 Score=43.41 Aligned_cols=47 Identities=19% Similarity=0.160 Sum_probs=31.3
Q ss_pred hhhhhhcccCCCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEE
Q 019975 25 QALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVL 73 (333)
Q Consensus 25 ~~l~~~~~~~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVL 73 (333)
.+|-. .......||||+|-|||-=+. .+.|..+++.|.+.+ ||+|+|
T Consensus 125 ~NL~~-~~~~~~~fD~I~CRNVlIYF~-~~~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 125 HNLLD-PDPPFGRFDLIFCRNVLIYFD-PETQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp --TT--S------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred cccCC-CCcccCCccEEEecCEEEEeC-HHHHHHHHHHHHHHcCCCCEEEE
Confidence 34433 245567999999999999985 888999999999985 888876
No 19
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=85.09 E-value=1.4 Score=40.20 Aligned_cols=45 Identities=22% Similarity=0.283 Sum_probs=38.2
Q ss_pred CCCcccEEEecccccCCCCchhHHHHHHHHHHhcCCeEEEEeCCCh
Q 019975 34 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 79 (333)
Q Consensus 34 ~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~~g~LVLVEpGtp 79 (333)
...+||+|++.++|..++ .+...++++++-+..++++||.|-=.+
T Consensus 102 ~~~sfD~V~~~~vL~hl~-p~~~~~~l~el~r~~~~~v~i~e~~~~ 146 (204)
T TIGR03587 102 KDNFFDLVLTKGVLIHIN-PDNLPTAYRELYRCSNRYILIAEYYNP 146 (204)
T ss_pred CCCCEEEEEECChhhhCC-HHHHHHHHHHHHhhcCcEEEEEEeeCC
Confidence 456899999999999986 677888999999988999999996443
No 20
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=82.51 E-value=1.9 Score=41.17 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=34.5
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCC
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPG 77 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpG 77 (333)
..+||+|++..+|.-++ ...+..+++++.+.+ +|++++|+.-
T Consensus 182 ~~~fD~I~~~~vl~~l~-~~~~~~~l~~~~~~LkpgG~~l~v~~~ 225 (287)
T PRK12335 182 QEEYDFILSTVVLMFLN-RERIPAIIKNMQEHTNPGGYNLIVCAM 225 (287)
T ss_pred cCCccEEEEcchhhhCC-HHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 45899999999998885 567778999998875 8998888653
No 21
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=81.75 E-value=2.5 Score=37.93 Aligned_cols=39 Identities=10% Similarity=0.120 Sum_probs=31.1
Q ss_pred CcccEEEecccccCCCCchhHHHHHHHHHHh--cCCeEEEEe
Q 019975 36 REHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 75 (333)
Q Consensus 36 ~~~DLVias~~L~EL~s~~~R~~~v~~LW~~--~~g~LVLVE 75 (333)
.+||+|+++.+|..++ ...+..+++++.+. .||++++++
T Consensus 93 ~~fD~I~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQ-AGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred CCCCEEEEecccccCC-HHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 4799999999998885 45677888888775 489877774
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=81.65 E-value=2.5 Score=38.00 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=32.1
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEe
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVE 75 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVE 75 (333)
..+||+|++++++.-++ ...+..+++++.+.+ +|++++++
T Consensus 93 ~~~fD~I~~~~~~~~~~-~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 93 DGEYDFILSTVVLMFLE-AKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred CCCcCEEEEecchhhCC-HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 34799999999987664 567888999998875 89877775
No 23
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=81.42 E-value=1.8 Score=41.08 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=34.2
Q ss_pred CCCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEe
Q 019975 34 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVE 75 (333)
Q Consensus 34 ~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVE 75 (333)
+..+||+|++.|+|.-++ ...+..+++++.+.+ ||+|+|-.
T Consensus 200 ~~~~fD~I~crnvl~yf~-~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 200 PLGDFDLIFCRNVLIYFD-EPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred ccCCCCEEEechhHHhCC-HHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 356899999999999985 677889999998875 88888743
No 24
>PRK06202 hypothetical protein; Provisional
Probab=81.13 E-value=5.4 Score=36.49 Aligned_cols=45 Identities=11% Similarity=0.179 Sum_probs=36.4
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHhcCCeEEEEeCCChh
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 80 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~~g~LVLVEpGtp~ 80 (333)
..+||+|+++++|..++. .+...+++.+++.+.|.+++.+...+.
T Consensus 127 ~~~fD~V~~~~~lhh~~d-~~~~~~l~~~~r~~~~~~~i~dl~~~~ 171 (232)
T PRK06202 127 GERFDVVTSNHFLHHLDD-AEVVRLLADSAALARRLVLHNDLIRSR 171 (232)
T ss_pred CCCccEEEECCeeecCCh-HHHHHHHHHHHHhcCeeEEEeccccCH
Confidence 468999999999999974 445678999999888888777766664
No 25
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=80.12 E-value=1.5 Score=42.47 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=32.6
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEE
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVL 73 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVL 73 (333)
...||+|+|-|||.-+. .+.|..+++.|.+.+ ||+|+|
T Consensus 221 ~~~fD~I~cRNvliyF~-~~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFD-KTTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred CCCcceeeHhhHHhcCC-HHHHHHHHHHHHHHhCCCcEEEE
Confidence 56899999999999885 778999999999985 887655
No 26
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=78.75 E-value=4.1 Score=40.46 Aligned_cols=43 Identities=12% Similarity=0.145 Sum_probs=33.8
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCCChh
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPGTPQ 80 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpGtp~ 80 (333)
...||+||++++|..+++. ..+++++.+.+ +|.|+|+++-.+.
T Consensus 176 ~~sFDvVIs~~~L~~~~d~---~~~L~e~~rvLkPGG~LvIi~~~~p~ 220 (340)
T PLN02490 176 TDYADRYVSAGSIEYWPDP---QRGIKEAYRVLKIGGKACLIGPVHPT 220 (340)
T ss_pred CCceeEEEEcChhhhCCCH---HHHHHHHHHhcCCCcEEEEEEecCcc
Confidence 4579999999999988753 34778887764 8999999876654
No 27
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=77.36 E-value=3.1 Score=39.12 Aligned_cols=46 Identities=20% Similarity=0.300 Sum_probs=33.7
Q ss_pred CCCcccEEEecccccCCCCchhHHHHHHHHHHhcCCeEEEEeCCChh
Q 019975 34 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 80 (333)
Q Consensus 34 ~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~~g~LVLVEpGtp~ 80 (333)
...+||.||+.++|-...+...-..-+..|.+ ++|.+++||+|--.
T Consensus 142 ~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLR-pgG~iifiEHva~~ 187 (252)
T KOG4300|consen 142 ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLR-PGGRIIFIEHVAGE 187 (252)
T ss_pred ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcC-CCcEEEEEeccccc
Confidence 35689999999999988765444444444433 49999999998543
No 28
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=77.29 E-value=2.8 Score=39.78 Aligned_cols=40 Identities=25% Similarity=0.353 Sum_probs=32.5
Q ss_pred ccCCCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEE
Q 019975 32 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLV 74 (333)
Q Consensus 32 ~~~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLV 74 (333)
....++||+|++-.||-.++.++. +|++++++. +|+|++=
T Consensus 119 ~~~~~~FDvV~cmEVlEHv~dp~~---~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 119 ASAGGQFDVVTCMEVLEHVPDPES---FLRACAKLVKPGGILFLS 160 (243)
T ss_pred HhcCCCccEEEEhhHHHccCCHHH---HHHHHHHHcCCCcEEEEe
Confidence 333479999999999999997654 889999984 7888874
No 29
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=76.73 E-value=3.8 Score=38.38 Aligned_cols=42 Identities=29% Similarity=0.423 Sum_probs=35.7
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCe-----EEEEeC
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDV-----LVLVEP 76 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~-----LVLVEp 76 (333)
..+||+|++|-|||=+|+..+|-+.+...-+.+ +|. |.||=|
T Consensus 102 ~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP 150 (219)
T PF11968_consen 102 SEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP 150 (219)
T ss_pred ccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeC
Confidence 558999999999999999999999988887764 677 777733
No 30
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=75.56 E-value=5.7 Score=35.20 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=34.3
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCCChhh
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPGTPQG 81 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpGtp~G 81 (333)
..+||+|+++++|...+. ...+++++++.+ +|.|+++|.-.+..
T Consensus 104 ~~~~D~i~~~~~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~~~ 149 (223)
T TIGR01934 104 DNSFDAVTIAFGLRNVTD---IQKALREMYRVLKPGGRLVILEFSKPAN 149 (223)
T ss_pred CCcEEEEEEeeeeCCccc---HHHHHHHHHHHcCCCcEEEEEEecCCCc
Confidence 457999999999876653 457888888874 99999999866644
No 31
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=74.39 E-value=3.9 Score=38.08 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=31.3
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCC
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPG 77 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpG 77 (333)
...||+|++.++|.-+... ..++..+++.+ ||.|+++...
T Consensus 110 ~~~fD~V~~~~vl~~~~~~---~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 110 ETPVDLILFHAVLEWVADP---KSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred CCCCCEEEehhHHHhhCCH---HHHHHHHHHHcCCCeEEEEEEEC
Confidence 4589999999999887643 46788888864 8999887644
No 32
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=73.29 E-value=8.8 Score=34.37 Aligned_cols=44 Identities=23% Similarity=0.440 Sum_probs=33.7
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCCChhh
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPGTPQG 81 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpGtp~G 81 (333)
...||+|+++++|..++.. ..+++++.+.+ +|.++++|...+..
T Consensus 119 ~~~~D~I~~~~~l~~~~~~---~~~l~~~~~~L~~gG~li~~~~~~~~~ 164 (239)
T PRK00216 119 DNSFDAVTIAFGLRNVPDI---DKALREMYRVLKPGGRLVILEFSKPTN 164 (239)
T ss_pred CCCccEEEEecccccCCCH---HHHHHHHHHhccCCcEEEEEEecCCCc
Confidence 4579999999999887643 45667776664 89999999877644
No 33
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=72.86 E-value=4.7 Score=41.01 Aligned_cols=43 Identities=12% Similarity=0.207 Sum_probs=34.6
Q ss_pred CCCcccEEEecccccCCCCchhHHHHHHHHHHh--cCCeEEEEeCC
Q 019975 34 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 77 (333)
Q Consensus 34 ~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~--~~g~LVLVEpG 77 (333)
+...||+|++.++|.-++ ..+..+++..+.+. .+|.|++.|.-
T Consensus 100 ~~~~fD~I~~~~~l~~l~-~~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 100 SDGSVDLIFSNWLLMYLS-DKEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred CCCCEEEEehhhhHHhCC-HHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 356899999999999996 55667788888776 48999998854
No 34
>PRK08317 hypothetical protein; Provisional
Probab=70.75 E-value=7.7 Score=34.48 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=31.6
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHh--cCCeEEEEeCC
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 77 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~--~~g~LVLVEpG 77 (333)
..+||+|++.++|..++.. ..+++++.+. .+|.|+++|+.
T Consensus 85 ~~~~D~v~~~~~~~~~~~~---~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 85 DGSFDAVRSDRVLQHLEDP---ARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CCCceEEEEechhhccCCH---HHHHHHHHHHhcCCcEEEEEecC
Confidence 4589999999999988753 4566777665 49999999975
No 35
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=69.55 E-value=5.8 Score=36.44 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=33.7
Q ss_pred ccEEEecccccCCCCchhHHHHHHHHHHhc--C--CeEEEEeCC
Q 019975 38 HDLVIASYVLGEVPSLQDRITIVRQLWDLT--R--DVLVLVEPG 77 (333)
Q Consensus 38 ~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~--g~LVLVEpG 77 (333)
+|+|+++|+|-..+ +++-..+++++...+ + |.|+|+|.=
T Consensus 159 ~D~~~l~~vLh~~~-d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 159 ADVYLLRHVLHDWS-DEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp ESEEEEESSGGGS--HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred ccceeeehhhhhcc-hHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 99999999999997 777788999998885 6 899999964
No 36
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=66.88 E-value=9 Score=35.57 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=32.0
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHh--cCCeEEEEeCCC
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 78 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~--~~g~LVLVEpGt 78 (333)
..+||+|+++++|.-++. ...+++++.+. +||.|++..+|+
T Consensus 87 ~~~fD~v~~~~~l~~~~d---~~~~l~~~~~~LkpgG~l~~~~~~~ 129 (255)
T PRK14103 87 KPDTDVVVSNAALQWVPE---HADLLVRWVDELAPGSWIAVQVPGN 129 (255)
T ss_pred CCCceEEEEehhhhhCCC---HHHHHHHHHHhCCCCcEEEEEcCCC
Confidence 458999999999988864 24567777665 499999988775
No 37
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=66.13 E-value=7.7 Score=35.50 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=32.0
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEe
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVE 75 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVE 75 (333)
...||+|+++.|+.-|+ ...+..++++|=+.+ ||+++++.
T Consensus 92 ~~~yD~I~st~v~~fL~-~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 92 PEEYDFIVSTVVFMFLQ-RELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp TTTEEEEEEESSGGGS--GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCcCEEEEEEEeccCC-HHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 45899999999999997 777888999996664 88877764
No 38
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=65.73 E-value=6.5 Score=37.83 Aligned_cols=39 Identities=23% Similarity=0.207 Sum_probs=33.8
Q ss_pred CCCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEE
Q 019975 34 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVL 73 (333)
Q Consensus 34 ~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVL 73 (333)
..+.||||+|=|||-=+. ...+..++..++..+ ||+|+|
T Consensus 199 ~~~~fD~IfCRNVLIYFd-~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 199 FLGKFDLIFCRNVLIYFD-EETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred ccCCCCEEEEcceEEeeC-HHHHHHHHHHHHHHhCCCCEEEE
Confidence 566899999999999995 777889999999986 788876
No 39
>PRK05785 hypothetical protein; Provisional
Probab=64.08 E-value=12 Score=34.55 Aligned_cols=48 Identities=15% Similarity=0.338 Sum_probs=36.5
Q ss_pred ccCCCcccEEEecccccCCCCchhHHHHHHHHHHhcCCeEEEEeCCChhhh
Q 019975 32 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGS 82 (333)
Q Consensus 32 ~~~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~~g~LVLVEpGtp~Gf 82 (333)
+-....||+|+++++|..+++ ..++++.+.+-+...++++|-++|.+.
T Consensus 105 p~~d~sfD~v~~~~~l~~~~d---~~~~l~e~~RvLkp~~~ile~~~p~~~ 152 (226)
T PRK05785 105 PFRDKSFDVVMSSFALHASDN---IEKVIAEFTRVSRKQVGFIAMGKPDNV 152 (226)
T ss_pred CCCCCCEEEEEecChhhccCC---HHHHHHHHHHHhcCceEEEEeCCCCcH
Confidence 344668999999999977653 456778887776656778999998764
No 40
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=63.62 E-value=9 Score=34.48 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=31.5
Q ss_pred CcccEEEecccccCCCCchhHHHHHHHHHHh--cCCeEEEEeCC
Q 019975 36 REHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 77 (333)
Q Consensus 36 ~~~DLVias~~L~EL~s~~~R~~~v~~LW~~--~~g~LVLVEpG 77 (333)
.+||+|++.++|..++. ...+++++.+. .+|.|++.+..
T Consensus 66 ~~fD~I~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 66 DTYDLVFGFEVIHHIKD---KMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred CCCCEeehHHHHHhCCC---HHHHHHHHHHHcCCCCEEEEEEcc
Confidence 47999999999988864 45778888776 49999999874
No 41
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=62.30 E-value=11 Score=33.74 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=32.2
Q ss_pred CCCcccEEEecccccCCCCchhHHHHHHHHHHh--cCCeEEEEeCCChh
Q 019975 34 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 80 (333)
Q Consensus 34 ~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~--~~g~LVLVEpGtp~ 80 (333)
...+||+|+++++|.-+... ..++.++-+. .+|.|++.+++...
T Consensus 95 ~~~~fD~vi~~~~l~~~~~~---~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 95 EDSSFDLIVSNLALQWCDDL---SQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred CCCceeEEEEhhhhhhccCH---HHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 34579999999999877543 3466666665 38999999887653
No 42
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=61.64 E-value=12 Score=34.86 Aligned_cols=40 Identities=10% Similarity=0.300 Sum_probs=30.7
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCC
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPG 77 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpG 77 (333)
...||+|++..+|.-.++ ...+++.+++.+ ||.|++++..
T Consensus 144 ~~~fD~Vi~~~v~~~~~d---~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 144 DNSVDVIISNCVINLSPD---KERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred CCceeEEEEcCcccCCCC---HHHHHHHHHHHcCCCcEEEEEEee
Confidence 458999999988876553 346788888874 9999998753
No 43
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=59.82 E-value=25 Score=34.47 Aligned_cols=40 Identities=20% Similarity=0.181 Sum_probs=29.2
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHhcCCeEEEEe
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 75 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~~g~LVLVE 75 (333)
..+||+|++.++|..++. .....+++.|....+|.++|.-
T Consensus 210 ~~~fD~Vv~~~vL~H~p~-~~~~~ll~~l~~l~~g~liIs~ 249 (315)
T PLN02585 210 SGKYDTVTCLDVLIHYPQ-DKADGMIAHLASLAEKRLIISF 249 (315)
T ss_pred CCCcCEEEEcCEEEecCH-HHHHHHHHHHHhhcCCEEEEEe
Confidence 458999999999988864 3344678888776666666654
No 44
>PLN02244 tocopherol O-methyltransferase
Probab=58.84 E-value=19 Score=35.27 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=32.2
Q ss_pred CCCcccEEEecccccCCCCchhHHHHHHHHHHh--cCCeEEEEeCC
Q 019975 34 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 77 (333)
Q Consensus 34 ~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~--~~g~LVLVEpG 77 (333)
....||+|++.+++..++. +..+++.+.+. .||.|||++..
T Consensus 183 ~~~~FD~V~s~~~~~h~~d---~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 183 EDGQFDLVWSMESGEHMPD---KRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred CCCCccEEEECCchhccCC---HHHHHHHHHHHcCCCcEEEEEEec
Confidence 3568999999999988864 45677777775 48999998754
No 45
>PLN03075 nicotianamine synthase; Provisional
Probab=57.74 E-value=15 Score=35.94 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=28.8
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEE
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVL 73 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVL 73 (333)
..+||+|++. +|-... ...+.++++++++.+ ||+|++
T Consensus 193 l~~FDlVF~~-ALi~~d-k~~k~~vL~~l~~~LkPGG~Lvl 231 (296)
T PLN03075 193 LKEYDVVFLA-ALVGMD-KEEKVKVIEHLGKHMAPGALLML 231 (296)
T ss_pred cCCcCEEEEe-cccccc-cccHHHHHHHHHHhcCCCcEEEE
Confidence 4589999999 887774 466788999999985 555554
No 46
>PRK04457 spermidine synthase; Provisional
Probab=57.08 E-value=35 Score=32.25 Aligned_cols=44 Identities=5% Similarity=-0.053 Sum_probs=26.5
Q ss_pred CCcccEEEecc-cccCCCCchhHHHHHHHHHHhc--CCeEEEEeCCC
Q 019975 35 EREHDLVIASY-VLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPGT 78 (333)
Q Consensus 35 ~~~~DLVias~-~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpGt 78 (333)
..+||+|++-. .-...+......++++.+++.+ +|.|++--.+.
T Consensus 134 ~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 134 RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 35899999742 1122222223457888888874 88888843333
No 47
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=55.75 E-value=22 Score=25.91 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=27.3
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHh--cCCeEEEE
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 74 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~--~~g~LVLV 74 (333)
..+||+|++.+++... ......+++.+.+. .+|.+++.
T Consensus 64 ~~~~d~i~~~~~~~~~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 64 DESFDVIISDPPLHHL--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred CCceEEEEEccceeeh--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4579999999998875 33455667777665 37777765
No 48
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=54.29 E-value=18 Score=32.85 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=29.9
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCC
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPG 77 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpG 77 (333)
..+||+|+++++|.-++.. ..+++++.+.+ +|.|++..++
T Consensus 112 ~~~fD~Ii~~~~l~~~~~~---~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 112 PGQFDVVTCMEMLEHVPDP---ASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CCCccEEEEhhHhhccCCH---HHHHHHHHHHcCCCcEEEEEecC
Confidence 4689999999999888654 34566665553 8999888765
No 49
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=54.08 E-value=14 Score=28.92 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=25.4
Q ss_pred cCCCcccEEEeccc-ccCCCCchhHHHHHHHHHHhc
Q 019975 33 KSEREHDLVIASYV-LGEVPSLQDRITIVRQLWDLT 67 (333)
Q Consensus 33 ~~~~~~DLVias~~-L~EL~s~~~R~~~v~~LW~~~ 67 (333)
....+||+|++++. |.-+ +..+...+++++-+.+
T Consensus 63 ~~~~~~D~v~~~~~~~~~~-~~~~~~~ll~~~~~~l 97 (101)
T PF13649_consen 63 FSDGKFDLVVCSGLSLHHL-SPEELEALLRRIARLL 97 (101)
T ss_dssp HHSSSEEEEEE-TTGGGGS-SHHHHHHHHHHHHHTE
T ss_pred ccCCCeeEEEEcCCccCCC-CHHHHHHHHHHHHHHh
Confidence 34569999999766 7776 4788888888887654
No 50
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=53.94 E-value=38 Score=29.55 Aligned_cols=50 Identities=6% Similarity=0.015 Sum_probs=32.9
Q ss_pred CCcccEEEecccccCCCCchh------------------HHHHHHHHHHhc--CCeEEEEeCCChhhhHH
Q 019975 35 EREHDLVIASYVLGEVPSLQD------------------RITIVRQLWDLT--RDVLVLVEPGTPQGSSI 84 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~------------------R~~~v~~LW~~~--~g~LVLVEpGtp~Gf~~ 84 (333)
..+||+|++...+..++.... ..++++.+.+.+ +|.+++++++...-.+.
T Consensus 80 ~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~ 149 (179)
T TIGR00537 80 RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDT 149 (179)
T ss_pred CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHH
Confidence 348999999877665543211 234677776664 89999999877643333
No 51
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=53.13 E-value=24 Score=31.60 Aligned_cols=43 Identities=26% Similarity=0.284 Sum_probs=28.9
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHhc-CCeEEEEeCCC
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLT-RDVLVLVEPGT 78 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~-~g~LVLVEpGt 78 (333)
...||+|++.++|..++ ......+++.|-+.. ++.+|+..+.+
T Consensus 125 ~~~fD~v~~~~~l~~~~-~~~~~~~l~~l~~~~~~~~~i~~~~~~ 168 (230)
T PRK07580 125 LGRFDTVVCLDVLIHYP-QEDAARMLAHLASLTRGSLIFTFAPYT 168 (230)
T ss_pred cCCcCEEEEcchhhcCC-HHHHHHHHHHHHhhcCCeEEEEECCcc
Confidence 45799999999997776 344556777776665 44555554444
No 52
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=52.67 E-value=10 Score=35.57 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=36.2
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHh--cCCeEEEEeCCChhhh
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGS 82 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~--~~g~LVLVEpGtp~Gf 82 (333)
.++||||.+.++|+-|. +++-.++++..=+. .+|+|||=|+=+..|+
T Consensus 120 ~~~YDlIW~QW~lghLT-D~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~ 168 (218)
T PF05891_consen 120 EGKYDLIWIQWCLGHLT-DEDLVAFLKRCKQALKPNGVIVVKENVSSSGF 168 (218)
T ss_dssp TT-EEEEEEES-GGGS--HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE
T ss_pred CCcEeEEEehHhhccCC-HHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC
Confidence 56899999999999996 76666666666554 3899999999998886
No 53
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=51.26 E-value=24 Score=33.71 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=31.5
Q ss_pred cccEEEecccccCCCCchhHHHHHHHHHHh--cCCeEEEEeC
Q 019975 37 EHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 76 (333)
Q Consensus 37 ~~DLVias~~L~EL~s~~~R~~~v~~LW~~--~~g~LVLVEp 76 (333)
.+|+|+++++|-... .+....+++++.+. .||.|+|+|.
T Consensus 215 ~~D~v~~~~~lh~~~-~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 215 EADAVLFCRILYSAN-EQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred CCCEEEeEhhhhcCC-hHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 479999999987664 45557789999886 4899999985
No 54
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=50.13 E-value=25 Score=35.77 Aligned_cols=41 Identities=5% Similarity=0.206 Sum_probs=32.7
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCCC
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPGT 78 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpGt 78 (333)
..+||+|++.++|..++. +..+++.+.+.+ ||.|+|.+...
T Consensus 330 ~~~fD~I~s~~~l~h~~d---~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 330 DNSFDVIYSRDTILHIQD---KPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred CCCEEEEEECCcccccCC---HHHHHHHHHHHcCCCeEEEEEEecc
Confidence 458999999999988864 456788888864 99999988644
No 55
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=49.28 E-value=17 Score=30.72 Aligned_cols=39 Identities=23% Similarity=0.538 Sum_probs=31.2
Q ss_pred CcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCC
Q 019975 36 REHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPG 77 (333)
Q Consensus 36 ~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpG 77 (333)
.+||+|++..+|.-+. ....+++++.+.+ +|.++++++.
T Consensus 72 ~~~D~I~~~~~l~~~~---~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 72 EKFDIIISNGVLHHFP---DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TTEEEEEEESTGGGTS---HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCeeEEEEcCchhhcc---CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 6999999999995554 3346788888875 8999999988
No 56
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=48.73 E-value=32 Score=33.06 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=36.9
Q ss_pred ccCCCcccEEEecccccCCCCchhHHHHHHHHHHh--cCCeEEEEeCCCh
Q 019975 32 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTP 79 (333)
Q Consensus 32 ~~~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~--~~g~LVLVEpGtp 79 (333)
+......|+|++-|||+.++ .+.-..++.+|-+. +||.|++=+=|.-
T Consensus 139 ~~~~~svD~it~IFvLSAi~-pek~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 139 PPEEGSVDIITLIFVLSAIH-PEKMQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred CCCcCccceEEEEEEEeccC-hHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence 45567899999999999997 55556677887776 5999999776653
No 57
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=48.15 E-value=20 Score=35.28 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=31.0
Q ss_pred CCCcccEEEecccccCCCCchhHHHHHHHHHHh--cCCeEEEEeCC
Q 019975 34 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 77 (333)
Q Consensus 34 ~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~--~~g~LVLVEpG 77 (333)
..++||+|++.++|..++... .+++.+.+. .||.|+|-...
T Consensus 195 ~~~~FD~Vi~~~vLeHv~d~~---~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 195 EGRKFDAVLSLEVIEHVANPA---EFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred ccCCCCEEEEhhHHHhcCCHH---HHHHHHHHHcCCCcEEEEEECC
Confidence 356899999999999998654 466666665 48888887653
No 58
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=47.07 E-value=34 Score=34.15 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=38.1
Q ss_pred cccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCCChh
Q 019975 37 EHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPGTPQ 80 (333)
Q Consensus 37 ~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpGtp~ 80 (333)
+-|+|++-++|..+. +++=.+++.+-|+.+ +|.|||||+=+|.
T Consensus 236 ~~daI~mkWiLhdwt-DedcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 236 KGDAIWMKWILHDWT-DEDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred CcCeEEEEeecccCC-hHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 467999999999996 777889999999985 9999999997665
No 59
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=46.95 E-value=40 Score=30.36 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=26.2
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCCC
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPGT 78 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpGt 78 (333)
..+||+|++... .....+++.+++.+ +|.|++++...
T Consensus 110 ~~~fDlV~~~~~-------~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 110 EEKFDVVTSRAV-------ASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred CCCccEEEEccc-------cCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 558999998642 22356777777764 99999997553
No 60
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=45.16 E-value=39 Score=31.12 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=31.0
Q ss_pred CcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCCCh
Q 019975 36 REHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPGTP 79 (333)
Q Consensus 36 ~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpGtp 79 (333)
.+||+|+++++|.-++. ...+++++.+.+ ||.+++.-+++.
T Consensus 92 ~~fD~v~~~~~l~~~~d---~~~~l~~~~~~LkpgG~~~~~~~~~~ 134 (258)
T PRK01683 92 QALDLIFANASLQWLPD---HLELFPRLVSLLAPGGVLAVQMPDNL 134 (258)
T ss_pred CCccEEEEccChhhCCC---HHHHHHHHHHhcCCCcEEEEECCCCC
Confidence 48999999999988763 346788887764 888888655543
No 61
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=39.45 E-value=45 Score=30.66 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=32.0
Q ss_pred CCCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCCCh
Q 019975 34 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPGTP 79 (333)
Q Consensus 34 ~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpGtp 79 (333)
....||+|+++.+|.-++. ...++.++.+.+ +|.|++...+..
T Consensus 100 ~~~~fD~V~s~~~l~~~~d---~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 100 ATATFDLAWSNLAVQWCGN---LSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred CCCcEEEEEECchhhhcCC---HHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 3458999999998876553 346777777654 899999988754
No 62
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=38.24 E-value=49 Score=30.35 Aligned_cols=38 Identities=21% Similarity=0.153 Sum_probs=31.7
Q ss_pred CcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEE
Q 019975 36 REHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLV 74 (333)
Q Consensus 36 ~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLV 74 (333)
.+||+|+-.-+|.-|+ ...|..+++.+-+.+ +|.++++
T Consensus 112 ~~fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 112 GPVDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CCcCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEEE
Confidence 4799999998888886 788999999998885 7876665
No 63
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=37.04 E-value=73 Score=27.91 Aligned_cols=38 Identities=16% Similarity=0.003 Sum_probs=25.8
Q ss_pred CcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCCCh
Q 019975 36 REHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPGTP 79 (333)
Q Consensus 36 ~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpGtp 79 (333)
.+||+|++++++..+ .++++.+++.+ +|.||+......
T Consensus 96 ~~~D~v~~~~~~~~~------~~~l~~~~~~Lk~gG~lv~~~~~~~ 135 (187)
T PRK08287 96 GKADAIFIGGSGGNL------TAIIDWSLAHLHPGGRLVLTFILLE 135 (187)
T ss_pred cCCCEEEECCCccCH------HHHHHHHHHhcCCCeEEEEEEecHh
Confidence 479999998765332 34677777764 888888665433
No 64
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=36.54 E-value=42 Score=29.98 Aligned_cols=39 Identities=26% Similarity=0.356 Sum_probs=28.8
Q ss_pred CcccEEEecccccCCCCchhHHHHHHHHHHh--cCCeEEEEeCC
Q 019975 36 REHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 77 (333)
Q Consensus 36 ~~~DLVias~~L~EL~s~~~R~~~v~~LW~~--~~g~LVLVEpG 77 (333)
.+||+|+++++|..+.... .+++++.+. .+|.+++...+
T Consensus 111 ~~~D~i~~~~~l~~~~~~~---~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 111 KSFDVVTCMEVLEHVPDPQ---AFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred CCccEEEehhHHHhCCCHH---HHHHHHHHhcCCCcEEEEEecC
Confidence 5899999999988776443 456666665 38888887764
No 65
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=36.31 E-value=44 Score=32.80 Aligned_cols=37 Identities=27% Similarity=0.170 Sum_probs=28.9
Q ss_pred CcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEe
Q 019975 36 REHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVE 75 (333)
Q Consensus 36 ~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVE 75 (333)
..||+|++..+|-.+++. ..++.++.+.+ ||.|||-.
T Consensus 187 ~~FD~V~s~gvL~H~~dp---~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 187 YAFDTVFSMGVLYHRKSP---LEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred CCcCEEEEcchhhccCCH---HHHHHHHHHhcCCCCEEEEEE
Confidence 379999999999888654 45777777764 89888743
No 66
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=35.60 E-value=20 Score=34.21 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=32.8
Q ss_pred cccEEEecccccCCCC-chhHHHHHHHHHHhc--CCeEEEEeCCChh
Q 019975 37 EHDLVIASYVLGEVPS-LQDRITIVRQLWDLT--RDVLVLVEPGTPQ 80 (333)
Q Consensus 37 ~~DLVias~~L~EL~s-~~~R~~~v~~LW~~~--~g~LVLVEpGtp~ 80 (333)
+||+|++++.|--... .++-...|+++-+++ ||+||++.--.-.
T Consensus 158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t 204 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGST 204 (256)
T ss_dssp SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-S
T ss_pred chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCce
Confidence 5999999999987753 345566888998874 9999998754433
No 67
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=34.14 E-value=1e+02 Score=27.67 Aligned_cols=42 Identities=2% Similarity=-0.126 Sum_probs=28.3
Q ss_pred CCcccEEEecccccCCCC--ch---hHHHHHHHHHHhc--CCeEEEEeC
Q 019975 35 EREHDLVIASYVLGEVPS--LQ---DRITIVRQLWDLT--RDVLVLVEP 76 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s--~~---~R~~~v~~LW~~~--~g~LVLVEp 76 (333)
...||+|++.+..-.... .. ....+++.+++.+ +|.|+|+.+
T Consensus 109 ~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 109 DGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred ccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 457999998775422221 11 2356888998875 899999865
No 68
>PRK06922 hypothetical protein; Provisional
Probab=32.22 E-value=58 Score=35.47 Aligned_cols=42 Identities=12% Similarity=0.157 Sum_probs=31.6
Q ss_pred CCcccEEEecccccCCCC----------chhHHHHHHHHHHhc--CCeEEEEeC
Q 019975 35 EREHDLVIASYVLGEVPS----------LQDRITIVRQLWDLT--RDVLVLVEP 76 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s----------~~~R~~~v~~LW~~~--~g~LVLVEp 76 (333)
...||+|+++++|-.+.+ ......+++++.+.+ ||.+||+|.
T Consensus 485 deSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 485 KESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred CCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 347999999988876531 234567888888864 999999985
No 69
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=32.11 E-value=1.1e+02 Score=27.36 Aligned_cols=33 Identities=30% Similarity=0.384 Sum_probs=24.7
Q ss_pred CcccEEEecccccCCCCchhHHHHHHHHHHhcCC
Q 019975 36 REHDLVIASYVLGEVPSLQDRITIVRQLWDLTRD 69 (333)
Q Consensus 36 ~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~~g 69 (333)
.+||+|+++++|.-++ ......+++.+.+.+.+
T Consensus 118 ~~fD~ii~~~~l~~~~-~~~~~~~l~~i~~~~~~ 150 (219)
T TIGR02021 118 GEFDIVVCMDVLIHYP-ASDMAKALGHLASLTKE 150 (219)
T ss_pred CCcCEEEEhhHHHhCC-HHHHHHHHHHHHHHhCC
Confidence 5899999999997775 44556678888766543
No 70
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=30.97 E-value=81 Score=31.64 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=33.2
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCCChh
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPGTPQ 80 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpGtp~ 80 (333)
..+||+|++..++..++ ......+++.+.+.+ +|.++|...+.+.
T Consensus 226 ~~~fD~Ivs~~~~ehvg-~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~ 272 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVG-PKNYRTYFEVVRRCLKPDGLFLLHTIGSNK 272 (383)
T ss_pred CCCCCEEEEeCchhhCC-hHHHHHHHHHHHHHcCCCcEEEEEEccCCC
Confidence 35799999988887764 444556788887764 8999998876543
No 71
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=30.32 E-value=1e+02 Score=27.07 Aligned_cols=56 Identities=9% Similarity=0.079 Sum_probs=30.1
Q ss_pred CCcccEEEecccc--------cCCCCchhHHHHHHHHHHhc--CCeEEEEeCCChhhh-HHHHHHHHH
Q 019975 35 EREHDLVIASYVL--------GEVPSLQDRITIVRQLWDLT--RDVLVLVEPGTPQGS-SIISQMRSH 91 (333)
Q Consensus 35 ~~~~DLVias~~L--------~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpGtp~Gf-~~I~~AR~~ 91 (333)
..+||+|++..+. ..+.+......++.++++.+ +|.+++.- ..+..+ +.+..+|..
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~-~~~~~~~~~l~~l~~~ 162 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV-FQGEEIDEYLNELRKL 162 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE-ccCccHHHHHHHHHhh
Confidence 4479999985432 11111122346788888864 88888743 333333 344444444
No 72
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=30.00 E-value=69 Score=30.95 Aligned_cols=42 Identities=24% Similarity=0.348 Sum_probs=31.8
Q ss_pred CCCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEE---------EeCCC
Q 019975 34 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVL---------VEPGT 78 (333)
Q Consensus 34 ~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVL---------VEpGt 78 (333)
...+||+|.|-|+|---..+ ..+++.+++.+ +|.||| ||.|+
T Consensus 148 ~~~~fDvIscLNvLDRc~~P---~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~ 200 (265)
T PF05219_consen 148 TDFKFDVISCLNVLDRCDRP---LTLLRDIRRALKPNGRLILAVVLPFRPYVEFGG 200 (265)
T ss_pred cCCceEEEeehhhhhccCCH---HHHHHHHHHHhCCCCEEEEEEEecccccEEcCC
Confidence 35689999999999877544 56777787764 888876 67766
No 73
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=28.30 E-value=81 Score=27.87 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=22.9
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHhc
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLT 67 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~ 67 (333)
..+||+|+++++|..++. ...+++++.+..
T Consensus 73 ~~sfD~Vi~~~~l~~~~d---~~~~l~e~~r~~ 102 (194)
T TIGR02081 73 DKSFDYVILSQTLQATRN---PEEILDEMLRVG 102 (194)
T ss_pred CCCcCEEEEhhHhHcCcC---HHHHHHHHHHhC
Confidence 458999999999988864 455777776654
No 74
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=26.15 E-value=1.1e+02 Score=22.27 Aligned_cols=39 Identities=10% Similarity=0.153 Sum_probs=28.9
Q ss_pred eCCeEEEeeccCCcCCCCCCCeeEEEEeccCCch-----hhhhhhhcCC
Q 019975 284 RGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPT-----LHRLAKKSLW 327 (333)
Q Consensus 284 R~gHV~ldvCtp~~~~~~~G~ler~~v~Ks~~kq-----~Y~dARKs~W 327 (333)
-.|.|++.+.-. ++|++....|.+|.|.. +-+.+++..|
T Consensus 8 ~~G~v~v~~~i~-----~~G~v~~~~i~~ssg~~~ld~~a~~av~~~~~ 51 (74)
T TIGR01352 8 IEGTVVVRFTVD-----ADGRVTSVSVLKSSGDEALDRAALEAVRKARF 51 (74)
T ss_pred CceEEEEEEEEC-----CCCCEEEEEEEEcCCChhHHHHHHHHHHhCCC
Confidence 458899998886 59999999999887643 4455555544
No 75
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=26.11 E-value=36 Score=34.34 Aligned_cols=13 Identities=15% Similarity=0.475 Sum_probs=11.9
Q ss_pred eeCCeEEEeeccC
Q 019975 283 RRGRQVAMDVCRS 295 (333)
Q Consensus 283 KR~gHV~ldvCtp 295 (333)
.++||.+||||++
T Consensus 153 v~p~~~VLDmCAA 165 (375)
T KOG2198|consen 153 VKPGDKVLDMCAA 165 (375)
T ss_pred cCCCCeeeeeccC
Confidence 4789999999998
No 76
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=24.98 E-value=78 Score=28.72 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=22.7
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHhcCCeEEEEe
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 75 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~~g~LVLVE 75 (333)
..+||+|++...+.+++. .+.+.| +.||.||+..
T Consensus 143 ~~~fD~I~~~~~~~~~~~-----~l~~~L--kpgG~lvi~~ 176 (212)
T PRK13942 143 NAPYDRIYVTAAGPDIPK-----PLIEQL--KDGGIMVIPV 176 (212)
T ss_pred CCCcCEEEECCCcccchH-----HHHHhh--CCCcEEEEEE
Confidence 458999999888766641 233333 2489888865
No 77
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=23.86 E-value=1.5e+02 Score=27.17 Aligned_cols=43 Identities=28% Similarity=0.294 Sum_probs=37.5
Q ss_pred CCCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCC
Q 019975 34 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPG 77 (333)
Q Consensus 34 ~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpG 77 (333)
....||-||++-=|..+| ...|.++++++..++ ||.||.+-=|
T Consensus 114 ~gq~~D~viS~lPll~~P-~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 114 KGQFFDSVISGLPLLNFP-MHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred CCCeeeeEEeccccccCc-HHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 344799999999999998 888999999999985 8999998766
No 78
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=23.43 E-value=86 Score=24.63 Aligned_cols=32 Identities=25% Similarity=0.248 Sum_probs=22.5
Q ss_pred CcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEE
Q 019975 36 REHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVL 73 (333)
Q Consensus 36 ~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVL 73 (333)
.+||+|++..... ...++++.+++.+ +|.||+
T Consensus 87 ~~~D~v~~~~~~~------~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 87 PEPDRVFIGGSGG------LLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred CCCCEEEECCcch------hHHHHHHHHHHHcCCCCEEEE
Confidence 4899999976432 2346788887774 788776
No 79
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=22.83 E-value=1.2e+02 Score=28.28 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=33.1
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEE
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLV 74 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLV 74 (333)
..+||+|.-.-.|--|+ .+.|.+.++.|-+.+ +|.|++|
T Consensus 122 ~~~fD~VyDra~~~Alp-p~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 122 LPVFDIWYDRGAYIALP-NDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred cCCcCeeeeehhHhcCC-HHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45899999999999997 888999999998864 7777776
No 80
>PRK01581 speE spermidine synthase; Validated
Probab=22.54 E-value=4.1e+02 Score=26.96 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=33.1
Q ss_pred CCcccch--hhhhhhhhhcccCCCcccEEEecccc--cCCCCchhHHHHHHHHHHhc--CCeEEEEeCCChh
Q 019975 15 LPLIHSY--NSIQALNKDISKSEREHDLVIASYVL--GEVPSLQDRITIVRQLWDLT--RDVLVLVEPGTPQ 80 (333)
Q Consensus 15 ~p~v~~~--~~~~~l~~~~~~~~~~~DLVias~~L--~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpGtp~ 80 (333)
-|+|+.+ +.+.++.. ...+||+||+-..= ......--..++++.+.+.+ +|++|.- .++|.
T Consensus 206 DpRV~vvi~Da~~fL~~----~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q-s~sp~ 272 (374)
T PRK01581 206 DNRVNVHVCDAKEFLSS----PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ-SNSPA 272 (374)
T ss_pred CCceEEEECcHHHHHHh----cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe-cCChh
Confidence 4555442 34445532 24579999998421 01011122346777777775 8887776 44453
No 81
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=22.22 E-value=1.3e+02 Score=28.58 Aligned_cols=42 Identities=19% Similarity=0.170 Sum_probs=27.2
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCCChhhh
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPGTPQGS 82 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpGtp~Gf 82 (333)
..+||+|++..+. .....++..+.+.+ +|+||+........-
T Consensus 223 ~~~fDlVvan~~~------~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~ 266 (288)
T TIGR00406 223 EGKADVIVANILA------EVIKELYPQFSRLVKPGGWLILSGILETQAQ 266 (288)
T ss_pred CCCceEEEEecCH------HHHHHHHHHHHHHcCCCcEEEEEeCcHhHHH
Confidence 4589999985432 12245666666653 899999877654433
No 82
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=22.12 E-value=1.2e+02 Score=27.93 Aligned_cols=37 Identities=27% Similarity=0.139 Sum_probs=30.3
Q ss_pred CcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEE
Q 019975 36 REHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVL 73 (333)
Q Consensus 36 ~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVL 73 (333)
..||+|+-+-+|.-|+ ...|..++..|-+.+ +|.++|
T Consensus 115 ~~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 115 ADVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEE
Confidence 4799999999999996 788999999998874 775443
No 83
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=21.20 E-value=1e+02 Score=27.80 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=21.3
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHh--cCCeEEEE
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 74 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~--~~g~LVLV 74 (333)
..+||+|++......++ ..+++. .+|.||+.
T Consensus 144 ~~~fD~Ii~~~~~~~~~---------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 144 LAPYDRIYVTAAGPKIP---------EALIDQLKEGGILVMP 176 (215)
T ss_pred cCCCCEEEEcCCccccc---------HHHHHhcCcCcEEEEE
Confidence 35899999988776664 223343 48988875
No 84
>PRK14967 putative methyltransferase; Provisional
Probab=21.16 E-value=3.1e+02 Score=24.79 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=14.2
Q ss_pred HHHHHHHhc--CCeEEEEeCCCh
Q 019975 59 IVRQLWDLT--RDVLVLVEPGTP 79 (333)
Q Consensus 59 ~v~~LW~~~--~g~LVLVEpGtp 79 (333)
+++..++.+ +|.|+++.+...
T Consensus 141 ~l~~a~~~Lk~gG~l~~~~~~~~ 163 (223)
T PRK14967 141 LCDAAPALLAPGGSLLLVQSELS 163 (223)
T ss_pred HHHHHHHhcCCCcEEEEEEeccc
Confidence 445555554 899999877764
No 85
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=20.33 E-value=1.1e+02 Score=29.78 Aligned_cols=37 Identities=30% Similarity=0.203 Sum_probs=27.4
Q ss_pred CCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEE
Q 019975 35 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLV 74 (333)
Q Consensus 35 ~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLV 74 (333)
...||+|++..+|..+.+ ...+++++.+.+ ||.|||-
T Consensus 187 ~~~FD~V~s~~vl~H~~d---p~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 187 LKAFDTVFSMGVLYHRRS---PLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred cCCcCEEEECChhhccCC---HHHHHHHHHHhcCCCcEEEEE
Confidence 458999999999887654 345677777764 8888763
Done!