BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019976
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 457 bits (1177), Expect = e-129, Method: Compositional matrix adjust.
Identities = 222/307 (72%), Positives = 256/307 (83%), Gaps = 2/307 (0%)
Query: 27 QLNSSFYATTCPNVTTIVRNALQQAMQSDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGN 86
QLN++FY+ TCPN + IVR+ +QQA+QSD RIGASLIRLHFHDCFVNGCD S+LLD G+
Sbjct: 2 QLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGS 61
Query: 87 ITQSEKDGGPNTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNV 146
I QSEK+ GPN NSARGF VVDNIKTA+EN+CPGVVSC+D+ GGPSW V
Sbjct: 62 I-QSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTV 120
Query: 147 LLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVF 206
LLGRRD L AN +GANSSIP+PI+SLSN+T KFSAVGL+T DLVALSGAHTFGRA+C VF
Sbjct: 121 LLGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVF 180
Query: 207 SGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNN 266
+ RL+NF+GTGNPDPT+N T L+TL+Q+CPQNG+ S + NLD +T D FDNNY+ NLQ+N
Sbjct: 181 NNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSN 240
Query: 267 QGLLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNISPLTGSNGEIRAD 326
GLLQSDQELFST G + I AIV +FASNQT FFQ F QSMINMGNISPLTGSNGEIR D
Sbjct: 241 DGLLQSDQELFSTTGSSTI-AIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLD 299
Query: 327 CKKVNGS 333
CKKVNGS
Sbjct: 300 CKKVNGS 306
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 422 bits (1086), Expect = e-119, Method: Compositional matrix adjust.
Identities = 216/306 (70%), Positives = 245/306 (80%), Gaps = 2/306 (0%)
Query: 28 LNSSFYATTCPNVTTIVRNALQQAMQSDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGNI 87
LN++FYA TCPN + +VR +QQA QSD RIGASLIRLHFHDCFV GCD S+LLD G+I
Sbjct: 4 LNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSI 63
Query: 88 TQSEKDGGPNTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNVL 147
SEK+ GPN NSARGF VVDNIKTA+EN+CPGVVSC D+ GGPSW V
Sbjct: 64 I-SEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVD 122
Query: 148 LGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVFS 207
LGRRD L ANQ+GANSSIP+P LSN+TSKFSAVGL+T DLVALSGAHTFGRA C VFS
Sbjct: 123 LGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFS 182
Query: 208 GRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNNQ 267
RL+NF+G GNPDPT+N T L+TL+++CPQ G GS NLD +T D FDNNY+TNLQ+N
Sbjct: 183 NRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQSNN 242
Query: 268 GLLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNISPLTGSNGEIRADC 327
GLLQSDQELFST G +A +AIV +FASNQT FFQ F QSMINMGNISPLTGS+GEIR DC
Sbjct: 243 GLLQSDQELFSTTG-SATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLDC 301
Query: 328 KKVNGS 333
KK NGS
Sbjct: 302 KKTNGS 307
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 332 bits (850), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 162/306 (52%), Positives = 209/306 (68%), Gaps = 2/306 (0%)
Query: 27 QLNSSFYATTCPNVTTIVRNALQQAMQSDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGN 86
QL +FY +CPNV+ IVR+ + ++SD RI AS++RLHFHDCFVNGCD S+LLD +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 ITQSEKDGGPNTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNV 146
++EKD N NSARGF V+D +K AVE++CP VSCAD+ GGPSW V
Sbjct: 61 F-RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 147 LLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLD-TTDLVALSGAHTFGRAQCRV 205
LGRRD L+A AN+++PAP +L L F VGL+ ++DLVALSG HTFG+ QCR
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 206 FSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQN 265
RLYNF+ TG PDPT+N TYL TLR +CP NGN SAL + D T FDN YY NL+
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 266 NQGLLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNISPLTGSNGEIRA 325
+GL+QSDQELFS+ + +V +FA++ FF FV++M MGNI+PLTG+ G+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 326 DCKKVN 331
+C+ VN
Sbjct: 300 NCRVVN 305
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 332 bits (850), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 162/306 (52%), Positives = 210/306 (68%), Gaps = 2/306 (0%)
Query: 27 QLNSSFYATTCPNVTTIVRNALQQAMQSDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGN 86
QL +FY +CPNV+ IVR+ + ++SD RI AS++RLHFHDCFVNGCD S+LLD +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 ITQSEKDGGPNTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNV 146
++EKD N NSARGF V+D +K AVE++CP VSCAD+ GGPSW V
Sbjct: 62 F-RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 147 LLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLD-TTDLVALSGAHTFGRAQCRV 205
LGRRD L+A AN+++PAP +L L F VGL+ ++DLVALSG HTFG+ QCR
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 206 FSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQN 265
RLYNF+ TG PDPT+N TYL TLR +CP NGN SAL ++D T FDN YY NL+
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNLEE 240
Query: 266 NQGLLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNISPLTGSNGEIRA 325
+GL+QSDQELFS+ + +V +FA++ FF FV++M MGNI+PLTG+ G+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 326 DCKKVN 331
+C+ VN
Sbjct: 301 NCRVVN 306
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 331 bits (848), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 162/306 (52%), Positives = 209/306 (68%), Gaps = 2/306 (0%)
Query: 27 QLNSSFYATTCPNVTTIVRNALQQAMQSDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGN 86
QL +FY +CPNV+ IVR+ + ++SD RI AS++RLHFHDCFVNGCD S+LLD +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 ITQSEKDGGPNTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNV 146
++EKD N NSARGF V+D +K AVE++CP VSCAD+ GGPSW V
Sbjct: 61 F-RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 147 LLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLD-TTDLVALSGAHTFGRAQCRV 205
LGRRD L+A AN+++PAP +L L F VGL+ ++DLVALSG HTFG+ QCR
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 206 FSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQN 265
RLYNF+ TG PDPT+N TYL TLR +CP NGN SAL + D T FDN YY NL+
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 266 NQGLLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNISPLTGSNGEIRA 325
+GL+QSDQELFS+ + +V +FA++ FF FV++M MGNI+PLTG+ G+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 326 DCKKVN 331
+C+ VN
Sbjct: 300 NCRVVN 305
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 331 bits (848), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 162/306 (52%), Positives = 209/306 (68%), Gaps = 2/306 (0%)
Query: 27 QLNSSFYATTCPNVTTIVRNALQQAMQSDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGN 86
QL +FY +CPNV+ IVR+ + ++SD RI AS++RLHFHDCFVNGCD S+LLD +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 ITQSEKDGGPNTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNV 146
++EKD N NSARGF V+D +K AVE++CP VSCAD+ GGPSW V
Sbjct: 62 F-RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 147 LLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLD-TTDLVALSGAHTFGRAQCRV 205
LGRRD L+A AN+++PAP +L L F VGL+ ++DLVALSG HTFG+ QCR
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 206 FSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQN 265
RLYNF+ TG PDPT+N TYL TLR +CP NGN SAL + D T FDN YY NL+
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 240
Query: 266 NQGLLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNISPLTGSNGEIRA 325
+GL+QSDQELFS+ + +V +FA++ FF FV++M MGNI+PLTG+ G+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 326 DCKKVN 331
+C+ VN
Sbjct: 301 NCRVVN 306
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 331 bits (848), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 162/306 (52%), Positives = 209/306 (68%), Gaps = 2/306 (0%)
Query: 27 QLNSSFYATTCPNVTTIVRNALQQAMQSDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGN 86
QL +FY +CPNV+ IVR+ + ++SD RI AS++RLHFHDCFVNGCD S+LLD +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 ITQSEKDGGPNTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNV 146
++EKD N NSARGF V+D +K AVE++CP VSCAD+ GGPSW V
Sbjct: 61 F-RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 147 LLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLD-TTDLVALSGAHTFGRAQCRV 205
LGRRD L+A AN+++PAP +L L F VGL+ ++DLVALSG HTFG+ QCR
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 206 FSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQN 265
RLYNF+ TG PDPT+N TYL TLR +CP NGN SAL + D T FDN YY NL+
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 266 NQGLLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNISPLTGSNGEIRA 325
+GL+QSDQELFS+ + +V +FA++ FF FV++M MGNI+PLTG+ G+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 326 DCKKVN 331
+C+ VN
Sbjct: 300 NCRVVN 305
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 330 bits (847), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 162/306 (52%), Positives = 209/306 (68%), Gaps = 2/306 (0%)
Query: 27 QLNSSFYATTCPNVTTIVRNALQQAMQSDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGN 86
QL +FY +CPNV+ IVR+ + ++SD RI AS++RLHFHDCFVNGCD S+LLD +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 ITQSEKDGGPNTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNV 146
++EKD N NSARGF V+D +K AVE++CP VSCAD+ GGPSW V
Sbjct: 62 F-RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 147 LLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLD-TTDLVALSGAHTFGRAQCRV 205
LGRRD L+A AN+++PAP +L L F VGL+ ++DLVALSG HTFG+ QCR
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRS 180
Query: 206 FSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQN 265
RLYNF+ TG PDPT+N TYL TLR +CP NGN SAL + D T FDN YY NL+
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 240
Query: 266 NQGLLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNISPLTGSNGEIRA 325
+GL+QSDQELFS+ + +V +FA++ FF FV++M MGNI+PLTG+ G+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 326 DCKKVN 331
+C+ VN
Sbjct: 301 NCRVVN 306
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 329 bits (844), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 161/306 (52%), Positives = 209/306 (68%), Gaps = 2/306 (0%)
Query: 27 QLNSSFYATTCPNVTTIVRNALQQAMQSDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGN 86
QL +FY +CPNV+ IVR+ + ++SD RI AS++RLHFHDCFVNGCD S+LLD +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 ITQSEKDGGPNTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNV 146
++EKD N NSARGF V+D +K AVE++CP VSCAD+ GGPSW V
Sbjct: 61 F-RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 147 LLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLD-TTDLVALSGAHTFGRAQCRV 205
LGRRD L+A AN+++PAP +L L F VGL+ ++DLVALSG H+FG+ QCR
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRF 179
Query: 206 FSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQN 265
RLYNF+ TG PDPT+N TYL TLR +CP NGN SAL + D T FDN YY NL+
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 266 NQGLLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNISPLTGSNGEIRA 325
+GL+QSDQELFS+ + +V +FA++ FF FV++M MGNI+PLTG+ G+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 326 DCKKVN 331
+C+ VN
Sbjct: 300 NCRVVN 305
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 329 bits (843), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 161/306 (52%), Positives = 208/306 (67%), Gaps = 2/306 (0%)
Query: 27 QLNSSFYATTCPNVTTIVRNALQQAMQSDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGN 86
QL +FY +CPNV+ IVR+ + ++SD RI AS++RLHFHDCFVNGCD S+LLD +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 ITQSEKDGGPNTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNV 146
++EKD N NSARGF V+D +K AVE++CP VSCAD+ GGPSW V
Sbjct: 62 F-RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 147 LLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLD-TTDLVALSGAHTFGRAQCRV 205
LGRRD L+A AN+++P P +L L F VGL+ ++DLVALSG HTFG+ QCR
Sbjct: 121 PLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 206 FSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQN 265
RLYNF+ TG PDPT+N TYL TLR +CP NGN SAL + D T FDN YY NL+
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 240
Query: 266 NQGLLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNISPLTGSNGEIRA 325
+GL+QSDQELFS+ + +V +FA++ FF FV++M MGNI+PLTG+ G+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 326 DCKKVN 331
+C+ VN
Sbjct: 301 NCRVVN 306
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 329 bits (843), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 161/306 (52%), Positives = 208/306 (67%), Gaps = 2/306 (0%)
Query: 27 QLNSSFYATTCPNVTTIVRNALQQAMQSDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGN 86
QL +FY +CPNV+ IVR+ + ++SD RI AS++RLHFHDCFVNGCD S+LLD +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 ITQSEKDGGPNTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNV 146
++EKD N NSARGF V+D +K AVE++CP VSCAD+ GGPSW V
Sbjct: 62 F-RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 147 LLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLD-TTDLVALSGAHTFGRAQCRV 205
LGRRD L+A AN+++P P +L L F VGL+ ++DLVALSG HTFG+ QCR
Sbjct: 121 PLGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 206 FSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQN 265
RLYNF+ TG PDPT+N TYL TLR +CP NGN SAL + D T FDN YY NL+
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 240
Query: 266 NQGLLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNISPLTGSNGEIRA 325
+GL+QSDQELFS+ + +V +FA++ FF FV++M MGNI+PLTG+ G+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 326 DCKKVN 331
+C+ VN
Sbjct: 301 NCRVVN 306
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 328 bits (842), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 161/306 (52%), Positives = 208/306 (67%), Gaps = 2/306 (0%)
Query: 27 QLNSSFYATTCPNVTTIVRNALQQAMQSDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGN 86
QL +FY +CPNV+ IVR+ + ++SD RI AS++RLHFHDCFVNGCD S+LLD +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 ITQSEKDGGPNTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNV 146
++EKD N NSARGF V+D +K AVE++CP VSCAD+ GGPSW V
Sbjct: 61 F-RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 147 LLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLD-TTDLVALSGAHTFGRAQCRV 205
LGRRD L+A AN+++PAP +L L F VGL+ ++DLVAL G HTFG+ QCR
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRF 179
Query: 206 FSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQN 265
RLYNF+ TG PDPT+N TYL TLR +CP NGN SAL + D T FDN YY NL+
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 266 NQGLLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNISPLTGSNGEIRA 325
+GL+QSDQELFS+ + +V +FA++ FF FV++M MGNI+PLTG+ G+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 326 DCKKVN 331
+C+ VN
Sbjct: 300 NCRVVN 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 328 bits (840), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 161/306 (52%), Positives = 208/306 (67%), Gaps = 2/306 (0%)
Query: 27 QLNSSFYATTCPNVTTIVRNALQQAMQSDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGN 86
QL +FY +CPNV+ IVR+ + ++SD RI AS++RLHF DCFVNGCD S+LLD +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTS 61
Query: 87 ITQSEKDGGPNTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNV 146
++EKD N NSARGF V+D +K AVE++CP VSCAD+ GGPSW V
Sbjct: 62 F-RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 147 LLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLD-TTDLVALSGAHTFGRAQCRV 205
LGRRD L+A AN+++PAP +L L F VGL+ ++DLVALSG HTFG+ QCR
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 206 FSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQN 265
RLYNF+ TG PDPT+N TYL TLR +CP NGN SAL + D T FDN YY NL+
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 240
Query: 266 NQGLLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNISPLTGSNGEIRA 325
+GL+QSDQELFS+ + +V +FA++ FF FV++M MGNI+PLTG+ G+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 326 DCKKVN 331
+C+ VN
Sbjct: 301 NCRVVN 306
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 327 bits (839), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 179/306 (58%), Positives = 206/306 (67%), Gaps = 2/306 (0%)
Query: 27 QLNSSFYATTCPNVTTIVRNALQQAMQSDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGN 86
QL +FY TCPN+ IV + A +D RIGASL+RLHFHDCFV GCDGSVLL+
Sbjct: 1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDT 60
Query: 87 ITQSEKDGGPNTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNV 146
I +SE+D PN NS RG VV++IKTAVENSCP VSCADI GGP W V
Sbjct: 61 I-ESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPV 119
Query: 147 LLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVF 206
LGRRD L AN++ AN ++PAP +L+ L + F+ GL+T DLV LSG HTFGRA+C F
Sbjct: 120 PLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTF 179
Query: 207 SGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNN 266
RLYNF+ TGNPDPT+N TYL LR CPQN G L NLD +T D FDN YY+NL
Sbjct: 180 INRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQL 239
Query: 267 QGLLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNISPLTGSNGEIRAD 326
GLLQSDQELFST G A + IVN+F+SNQ FF F SMI MGNI LTG GEIR
Sbjct: 240 NGLLQSDQELFSTPG-ADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQ 298
Query: 327 CKKVNG 332
C VNG
Sbjct: 299 CNFVNG 304
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 325 bits (833), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 160/306 (52%), Positives = 207/306 (67%), Gaps = 2/306 (0%)
Query: 27 QLNSSFYATTCPNVTTIVRNALQQAMQSDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGN 86
QL +FY +CPNV+ IVR+ + ++SD RI AS++ LHF DCFVNGCD S+LLD +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTS 60
Query: 87 ITQSEKDGGPNTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNV 146
++EKD N NSARGF V+D +K AVE++CP VSCAD+ GGPSW V
Sbjct: 61 F-RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 147 LLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLD-TTDLVALSGAHTFGRAQCRV 205
LGRRD L+A AN+++PAP +L L F VGL+ ++DLVALSG HTFG+ QCR
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 206 FSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQN 265
RLYNF+ TG PDPT+N TYL TLR +CP NGN SAL + D T FDN YY NL+
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 266 NQGLLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNISPLTGSNGEIRA 325
+GL+QSDQELFS+ + +V +FA++ FF FV++M MGNI+PLTG+ G+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 326 DCKKVN 331
+C+ VN
Sbjct: 300 NCRVVN 305
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 320 bits (821), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 160/306 (52%), Positives = 209/306 (68%), Gaps = 8/306 (2%)
Query: 27 QLNSSFYATTCPNVTTIVRNALQQAMQSDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGN 86
QL+ YA +CPN+ IVR + A++++IR+ ASLIRLHFHDCFVNGCD S+LLD
Sbjct: 1 QLSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGA-- 58
Query: 87 ITQSEKDGGPNTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNV 146
SEK PN NSARGF V+D IK AVEN+CPGVVSCADI GGP W V
Sbjct: 59 --DSEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRV 116
Query: 147 LLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVF 206
LGR+DGL ANQ+ AN+ +P+P + L + +KF AV L+ TD+VALSGAHTFG+A+C VF
Sbjct: 117 ALGRKDGLVANQNSANN-LPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVF 175
Query: 207 SGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNN 266
S RL+NF G GNPD T+ + L+ L+ +CP GN + A LD +T DTFDNNY+ NL
Sbjct: 176 SNRLFNFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLEG 235
Query: 267 QGLLQSDQELFSTNGPA-AIVAIVNNFASNQTAFFQQFVQSMINMGNISPLTGSNGEIRA 325
+GLL SDQ LFS++ +V ++ +Q+ FF+ F +MI MGNIS G++GE+R
Sbjct: 236 KGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS--NGASGEVRT 293
Query: 326 DCKKVN 331
+C+ +N
Sbjct: 294 NCRVIN 299
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 294 bits (753), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 156/304 (51%), Positives = 196/304 (64%), Gaps = 11/304 (3%)
Query: 28 LNSSFYATTCPNVTTIVRNALQQAMQSDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGNI 87
L+S+FYAT CPN + +++A+ A+ + R+GASL+RLHFHDCFV GCD SVLLD N
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 88 TQSEKDGGPNTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNVL 147
T EK GPN NS RGF V+D IK+ VE+ CPGVVSCADI GG SWNVL
Sbjct: 62 T-GEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVL 120
Query: 148 LGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVFS 207
LGRRD A+ S ANS +PAP +LS L S FS G T +LV LSGAHT G+AQC F
Sbjct: 121 LGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFR 180
Query: 208 GRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNNQ 267
R+YN N DP TY +L+ CP G + L+ D TT + FDN YY NL+N +
Sbjct: 181 TRIYN---ESNIDP----TYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKK 233
Query: 268 GLLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNISPLTGSNGEIRADC 327
GLL SDQ+LF NG + + V +++N F F +MI MGN+SPLTG++G+IR +C
Sbjct: 234 GLLHSDQQLF--NG-VSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNC 290
Query: 328 KKVN 331
+K N
Sbjct: 291 RKTN 294
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 226 bits (577), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/306 (43%), Positives = 171/306 (55%), Gaps = 6/306 (1%)
Query: 28 LNSSFYATTCPNVTTIVRNALQQAMQSDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGNI 87
L FY T+CP ++V+ A+ A ++ I LIR+HFHDCFV GCD SVLLD N
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 88 TQSEKDGGPNTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNVL 147
T +EKD PN S RGF V+ K+AVE +CP VSCADI G ++ V
Sbjct: 62 T-AEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVP 120
Query: 148 LGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVFS 207
GRRDG + S AN+ IP+P+ + + L + F+ L ++V LSGAH+ G A C F+
Sbjct: 121 SGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFT 180
Query: 208 GRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGN--GSALANLDPTTADTFDNNYYTNLQN 265
RLYNFN DPT++ +Y LR CP N +LD T DN YYT +Q
Sbjct: 181 NRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQL 240
Query: 266 NQGLLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNISPLTGSNGEIRA 325
GLL SDQ L + A + A V A N TA+ +F Q+M+ MG I LTG+ GEIR
Sbjct: 241 TLGLLTSDQALVTE---ANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRT 297
Query: 326 DCKKVN 331
+C VN
Sbjct: 298 NCSVVN 303
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 214 bits (546), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 126/307 (41%), Positives = 167/307 (54%), Gaps = 13/307 (4%)
Query: 28 LNSSFYATTCPNVTTIVRNALQQAMQSDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGNI 87
L+ FY TCP +IVR +Q+A++ DI + A L+RLHFHDCFV GCD SVLLD G
Sbjct: 9 LSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLD-GSAT 67
Query: 88 TQSEKDGGPN-TNSARGFGVVDNIKTAVENSCPG-VVSCADIXXXXXXXXXXXXGGPSWN 145
E+ PN T F V++I+ +E C G VVSC+DI GGP +
Sbjct: 68 GPGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYR 127
Query: 146 VLLGRRDGLR-ANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCR 204
V LGRRD A+ S +P P ++ +L + +GLD TDLV +SG HT G A C
Sbjct: 128 VPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCS 187
Query: 205 VFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQ 264
F RL+ PDPT++ T+L+ L++ CP G LD T + FDN YY +L
Sbjct: 188 SFEDRLFP-----RPDPTISPTFLSRLKRTCPAKGTDRRTV-LDVRTPNVFDNKYYIDLV 241
Query: 265 NNQGLLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNISPLTGSNGEIR 324
N +GL SDQ+LF+ A IV FA +Q FF+QF S+ MG + T GE+R
Sbjct: 242 NREGLFVSDQDLFTN---AITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVR 298
Query: 325 ADCKKVN 331
+C N
Sbjct: 299 RNCSVRN 305
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 29/198 (14%)
Query: 122 VSCADIXXXXXXXXXXXXGGPSWNVLLGRRDGLRANQSGANSSIP--APIDSLSNLTSKF 179
V+ AD+ GGP + GR D Q +P P +L F
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 180 SAVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNG 239
+GL+ ++VALSGAHT GR++ + +G G P+ T T ++G
Sbjct: 147 YRMGLNDKEIVALSGAHTLGRSRP--------DRSGWGKPE-----TKYT-------KDG 186
Query: 240 NGSALANLDPTTADTFDNNYYTNLQNNQG----LLQSDQELFSTNGPAAIVAIVNNFASN 295
G+ FDN+Y+ +++ + +L +D LF + +A++
Sbjct: 187 PGAPGGQSWTAQWLKFDNSYFKDIKERRDEDLLVLPTDAALFED---PSFKVYAEKYAAD 243
Query: 296 QTAFFQQFVQSMINMGNI 313
AFF+ + ++ + N+
Sbjct: 244 PEAFFKDYAEAHAKLSNL 261
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 72/182 (39%), Gaps = 39/182 (21%)
Query: 44 VRNALQQAMQSDIRIGASLIRLHFH-----DCFVNGCDGSVLLDRGGNITQSEKDGGPNT 98
+R ++ + + +G SLIRL +H DCF +KDG PN+
Sbjct: 12 LRADIEDMISEKLELGPSLIRLAWHEAASYDCF-------------------KKDGSPNS 52
Query: 99 NSAR-----------GFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNVL 147
S R G + ++ P + S AD+ GGP+
Sbjct: 53 ASMRFKPECLYAGNKGLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFC 111
Query: 148 LGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRV-F 206
GR D + G + +P + S++ F +G + + VAL GAHT G +C + F
Sbjct: 112 WGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCG--ECHIEF 169
Query: 207 SG 208
SG
Sbjct: 170 SG 171
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 72/182 (39%), Gaps = 39/182 (21%)
Query: 44 VRNALQQAMQSDIRIGASLIRLHFH-----DCFVNGCDGSVLLDRGGNITQSEKDGGPNT 98
+R ++ + + +G SLIRL +H DCF +KDG PN+
Sbjct: 11 LRADIEDMISEKLELGPSLIRLAWHEAASYDCF-------------------KKDGSPNS 51
Query: 99 NSAR-----------GFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNVL 147
S R G + ++ P + S AD+ GGP+
Sbjct: 52 ASMRFKPECLYAGNKGLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFC 110
Query: 148 LGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRV-F 206
GR D + G + +P + S++ F +G + + VAL GAHT G +C + F
Sbjct: 111 WGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCG--ECHIEF 168
Query: 207 SG 208
SG
Sbjct: 169 SG 170
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 107/298 (35%), Gaps = 76/298 (25%)
Query: 36 TCPNVTTIVRNALQQAMQ------SDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGNITQ 89
+ P V+ + A+++A + ++ R ++RL +H G +
Sbjct: 15 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSA--------------GTFDK 60
Query: 90 SEKDGGP----------NTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXX 139
K GGP ++ G + + ++ P ++S AD
Sbjct: 61 GTKTGGPFGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVT 119
Query: 140 GGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFG 199
GGP GR D G D L ++ K A+GL D+VALSG HT G
Sbjct: 120 GGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIG 177
Query: 200 RAQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNY 259
A SG F G +P + FDN+Y
Sbjct: 178 AAHKEA-SG----FEGPWTSNPLI-------------------------------FDNSY 201
Query: 260 YTNLQ--NNQGLLQ--SDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNI 313
+T L +GLLQ SD+ L S +V+ +A+++ AFF + ++ + +
Sbjct: 202 FTELLSGEKEGLLQLPSDKALLSD---PVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 108/298 (36%), Gaps = 76/298 (25%)
Query: 36 TCPNVTTIVRNALQQAMQ------SDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGNITQ 89
+ P V+ + A+++A + ++ R ++RL +H G +
Sbjct: 15 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSA--------------GTFDK 60
Query: 90 SEKDGGP----------NTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXX 139
K GGP ++ G + + ++ P ++S AD
Sbjct: 61 GTKTGGPFGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVT 119
Query: 140 GGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFG 199
GGP GR D G D L ++ K A+GL D+VALSG HT G
Sbjct: 120 GGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIG 177
Query: 200 RAQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNY 259
A + SG F G +P + FDN+Y
Sbjct: 178 AAH-KERSG----FEGPWTSNPLI-------------------------------FDNSY 201
Query: 260 YTNLQ--NNQGLLQ--SDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNI 313
+T L +GLLQ SD+ L S +V+ +A+++ AFF + ++ + +
Sbjct: 202 FTELLSGEKEGLLQLPSDKALLSD---PVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 108/298 (36%), Gaps = 76/298 (25%)
Query: 36 TCPNVTTIVRNALQQAMQ------SDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGNITQ 89
+ P V+ + A+++A + ++ R ++RL +H G +
Sbjct: 3 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSA--------------GTFDK 48
Query: 90 SEKDGGP----------NTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXX 139
K GGP ++ G + + ++ P ++S AD
Sbjct: 49 GTKTGGPFGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVT 107
Query: 140 GGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFG 199
GGP GR D G D L ++ K A+GL D+VALSG HT G
Sbjct: 108 GGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIG 165
Query: 200 RAQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNY 259
A + SG F G +P + FDN+Y
Sbjct: 166 AAH-KERSG----FEGPWTSNPLI-------------------------------FDNSY 189
Query: 260 YTNLQ--NNQGLLQ--SDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNI 313
+T L +GLLQ SD+ L S +V+ +A+++ AFF + ++ + +
Sbjct: 190 FTELLSGEKEGLLQLPSDKALLSD---PVFRPLVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 68/176 (38%), Gaps = 27/176 (15%)
Query: 44 VRNALQQAMQSDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGNITQSEKDGGPNTNSAR- 102
+R ++ + + +G SLIRL +H+ C +KDG PN+ S R
Sbjct: 12 LRADIEDMISEKLELGPSLIRLAWHEAASYDC--------------FKKDGSPNSASMRF 57
Query: 103 ----------GFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNVLLGRRD 152
G + ++ P + S AD+ GGP+ GR D
Sbjct: 58 KPECLYAGNKGLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVD 116
Query: 153 GLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVFSG 208
+ G + +P + S++ F +G + + VAL GAHT G FSG
Sbjct: 117 AKDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGETHIE-FSG 171
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 108/298 (36%), Gaps = 76/298 (25%)
Query: 36 TCPNVTTIVRNALQQAMQ------SDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGNITQ 89
+ P V+ + A+++A + ++ R ++RL +H G +
Sbjct: 15 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSA--------------GTFDK 60
Query: 90 SEKDGGP----------NTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXX 139
K GGP ++ G + + ++ P ++S AD
Sbjct: 61 GTKTGGPFGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVT 119
Query: 140 GGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFG 199
GGP GR D G D L ++ K A+GL D+VALSG HT G
Sbjct: 120 GGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIG 177
Query: 200 RAQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNY 259
A + SG F G +P + FDN+Y
Sbjct: 178 AAH-KERSG----FEGPWTSNPLI-------------------------------FDNSY 201
Query: 260 YTNLQ--NNQGLLQ--SDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNI 313
+T L +GLLQ SD+ L S +V+ +A+++ AFF + ++ + +
Sbjct: 202 FTELLSGEKEGLLQLPSDKALLSD---PVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 103/297 (34%), Gaps = 72/297 (24%)
Query: 33 YATTCPNVTTIVRNALQQ--AMQSDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGNITQS 90
Y T P+ + A ++ ++ + ++RL +H G
Sbjct: 4 YPTVSPDYQKAIEKAKRKLRGFIAEKKCAPLILRLAWHSA--------------GTFDSK 49
Query: 91 EKDGGP----------NTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXG 140
K GGP + G + + ++ P +VS AD G
Sbjct: 50 TKTGGPFGTIKHQAELAHGANNGLDIAVRLLEPIKEQFP-IVSYADFYQLAGVVAVEITG 108
Query: 141 GPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGR 200
GP GR D G D L ++ K A+GL D+VALSG HT G
Sbjct: 109 GPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGK--AMGLSDQDIVALSGGHTIGA 166
Query: 201 AQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYY 260
A + SG F G +P + FDN+Y+
Sbjct: 167 AH-KERSG----FEGPWTSNPLI-------------------------------FDNSYF 190
Query: 261 TNLQNNQ--GLLQ--SDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNI 313
T L + GLLQ SD+ L + + +V +A+++ FF + ++ + + +
Sbjct: 191 TELLTGEKDGLLQLPSDKALLTDS---VFRPLVEKYAADEDVFFADYAEAHLKLSEL 244
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/298 (21%), Positives = 108/298 (36%), Gaps = 76/298 (25%)
Query: 36 TCPNVTTIVRNALQQAMQ------SDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGNITQ 89
+ P V+ + A+++A + ++ R +++L +H G +
Sbjct: 3 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLKLAWHSA--------------GTFDK 48
Query: 90 SEKDGGP----------NTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXX 139
K GGP ++ G + + ++ P ++S AD
Sbjct: 49 GTKTGGPFGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVT 107
Query: 140 GGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFG 199
GGP GR D G D L ++ K A+GL D+VALSG HT G
Sbjct: 108 GGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIG 165
Query: 200 RAQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNY 259
A + SG F G +P + FDN+Y
Sbjct: 166 AAH-KERSG----FEGPWTSNPLI-------------------------------FDNSY 189
Query: 260 YTNLQ--NNQGLLQ--SDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNI 313
+T L +GLLQ SD+ L S +V+ +A+++ AFF + ++ + +
Sbjct: 190 FTELLSGEKEGLLQLPSDKALLSD---PVFRPLVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 74/197 (37%), Gaps = 45/197 (22%)
Query: 121 VVSCADIXXXXXXXXXXXXGGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFS 180
++S AD GGP GR D G D L ++ K
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGK-- 158
Query: 181 AVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGN 240
A+GL D+VALSG HT G A + SG F G +P +
Sbjct: 159 AMGLTDQDIVALSGGHTIGAAH-KERSG----FEGPWTSNPLI----------------- 196
Query: 241 GSALANLDPTTADTFDNNYYTNLQ--NNQGLLQ--SDQELFSTNGPAAIVAIVNNFASNQ 296
FDN+Y+T L +GLLQ SD+ L S +V+ +A+++
Sbjct: 197 --------------FDNSYFTELLSGEKEGLLQLPSDKALLSD---PVFRPLVDKYAADE 239
Query: 297 TAFFQQFVQSMINMGNI 313
AFF + ++ + +
Sbjct: 240 DAFFADYAEAHQKLSEL 256
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 74/197 (37%), Gaps = 45/197 (22%)
Query: 121 VVSCADIXXXXXXXXXXXXGGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFS 180
++S AD GGP GR D G D L ++ K
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGK-- 158
Query: 181 AVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGN 240
A+GL D+VALSG HT G A + SG F G +P +
Sbjct: 159 AMGLTDQDIVALSGGHTIGAAH-KERSG----FEGPWTSNPLI----------------- 196
Query: 241 GSALANLDPTTADTFDNNYYTNLQ--NNQGLLQ--SDQELFSTNGPAAIVAIVNNFASNQ 296
FDN+Y+T L +GLLQ SD+ L S +V+ +A+++
Sbjct: 197 --------------FDNSYFTELLSGEKEGLLQLPSDKALLSD---PVFRPLVDKYAADE 239
Query: 297 TAFFQQFVQSMINMGNI 313
AFF + ++ + +
Sbjct: 240 DAFFADYAEAHQKLSEL 256
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 74/197 (37%), Gaps = 45/197 (22%)
Query: 121 VVSCADIXXXXXXXXXXXXGGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFS 180
++S AD GGP GR D G D L ++ K
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGK-- 158
Query: 181 AVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGN 240
A+GL D+VALSG HT G A + SG F G +P +
Sbjct: 159 AMGLTDQDIVALSGGHTIGAAH-KERSG----FEGPWTSNPLI----------------- 196
Query: 241 GSALANLDPTTADTFDNNYYTNLQ--NNQGLLQ--SDQELFSTNGPAAIVAIVNNFASNQ 296
FDN+Y+T L +GLLQ SD+ L S +V+ +A+++
Sbjct: 197 --------------FDNSYFTELLSGEKEGLLQLPSDKALLSD---PVFRPLVDKYAADE 239
Query: 297 TAFFQQFVQSMINMGNI 313
AFF + ++ + +
Sbjct: 240 DAFFADYAEAHQKLSEL 256
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 74/197 (37%), Gaps = 45/197 (22%)
Query: 121 VVSCADIXXXXXXXXXXXXGGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFS 180
++S AD GGP GR D G D L ++ K
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGK-- 146
Query: 181 AVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGN 240
A+GL D+VALSG HT G A + SG F G +P +
Sbjct: 147 AMGLTDQDIVALSGGHTIGAAH-KERSG----FEGPWTSNPLI----------------- 184
Query: 241 GSALANLDPTTADTFDNNYYTNLQ--NNQGLLQ--SDQELFSTNGPAAIVAIVNNFASNQ 296
FDN+Y+T L +GLLQ SD+ L S +V+ +A+++
Sbjct: 185 --------------FDNSYFTELLSGEKEGLLQLPSDKALLSD---PVFRPLVDKYAADE 227
Query: 297 TAFFQQFVQSMINMGNI 313
AFF + ++ + +
Sbjct: 228 DAFFADYAEAHQKLSEL 244
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 74/197 (37%), Gaps = 45/197 (22%)
Query: 121 VVSCADIXXXXXXXXXXXXGGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFS 180
++S AD GGP GR D G D L ++ K
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGK-- 146
Query: 181 AVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGN 240
A+GL D+VALSG HT G A + SG F G +P +
Sbjct: 147 AMGLTDQDIVALSGGHTIGAAH-KERSG----FEGPWTSNPLI----------------- 184
Query: 241 GSALANLDPTTADTFDNNYYTNLQ--NNQGLLQ--SDQELFSTNGPAAIVAIVNNFASNQ 296
FDN+Y+T L +GLLQ SD+ L S +V+ +A+++
Sbjct: 185 --------------FDNSYFTELLSGEKEGLLQLPSDKALLSD---PVFRPLVDKYAADE 227
Query: 297 TAFFQQFVQSMINMGNI 313
AFF + ++ + +
Sbjct: 228 DAFFADYAEAHQKLSEL 244
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 74/197 (37%), Gaps = 45/197 (22%)
Query: 121 VVSCADIXXXXXXXXXXXXGGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFS 180
++S AD GGP GR D G D L ++ K
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGK-- 158
Query: 181 AVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGN 240
A+GL D+VALSG HT G A + SG F G +P +
Sbjct: 159 AMGLTDQDIVALSGGHTIGAAH-KERSG----FEGPWTSNPLI----------------- 196
Query: 241 GSALANLDPTTADTFDNNYYTNLQ--NNQGLLQ--SDQELFSTNGPAAIVAIVNNFASNQ 296
FDN+Y+T L +GLLQ SD+ L S +V+ +A+++
Sbjct: 197 --------------FDNSYFTELLSGEKEGLLQLPSDKALLSD---PVFRPLVDKYAADE 239
Query: 297 TAFFQQFVQSMINMGNI 313
AFF + ++ + +
Sbjct: 240 DAFFADYAEAHQKLSEL 256
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 98/274 (35%), Gaps = 33/274 (12%)
Query: 44 VRNALQQAMQSD------IRIGASLIRLHFHDCFVNGCDGSVLLDRGGNITQSEKDGGP- 96
V NA+ ++ D I G L+RL +H + GG ++ P
Sbjct: 22 VYNAIALKLREDDEYDNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPS 81
Query: 97 NTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNVLLGRRDGLRA 156
N GF ++ I +S D+ GP GR D
Sbjct: 82 NAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPE 135
Query: 157 NQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGT 216
+ + N +P + + F + ++ ++VAL GAHT G+ + SG Y T
Sbjct: 136 DTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLKN-SG--YEGPWT 192
Query: 217 GNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNNQGLLQSDQEL 276
NP+ N YL L + N + D + Y L + L+Q + L
Sbjct: 193 ANPNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSG-------YMMLPTDYSLIQDPKYL 245
Query: 277 FSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINM 310
+IV +A++Q FF+ F ++ +
Sbjct: 246 ----------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 98/274 (35%), Gaps = 33/274 (12%)
Query: 44 VRNALQQAMQSD------IRIGASLIRLHFHDCFVNGCDGSVLLDRGGNITQSEKDGGP- 96
V NA+ ++ D I G L+RL +H + GG ++ P
Sbjct: 22 VYNAIALKLREDDEYDNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPS 81
Query: 97 NTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNVLLGRRDGLRA 156
N GF ++ I +S D+ GP GR D
Sbjct: 82 NAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPE 135
Query: 157 NQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGT 216
+ + N +P + + F + ++ ++VALSGAHT G+ + SG Y T
Sbjct: 136 DTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALSGAHTLGKTHLKN-SG--YEGPWT 192
Query: 217 GNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNNQGLLQSDQEL 276
N + N YL L + N + D + Y L + L+Q + L
Sbjct: 193 ANNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSG-------YLQLPTDYSLIQDPKYL 245
Query: 277 FSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINM 310
+IV +A++Q FF+ F ++ +
Sbjct: 246 ----------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 97/274 (35%), Gaps = 33/274 (12%)
Query: 44 VRNALQQAMQSD------IRIGASLIRLHFHDCFVNGCDGSVLLDRGGNITQSEKDGGP- 96
V NA+ ++ D I G L+RL +H + GG ++ P
Sbjct: 22 VYNAIALKLREDDEYDNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPS 81
Query: 97 NTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNVLLGRRDGLRA 156
N GF ++ I +S D+ GP GR D
Sbjct: 82 NAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPE 135
Query: 157 NQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGT 216
+ + N +P + + F + ++ ++VAL GAHT G+ + SG Y T
Sbjct: 136 DTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLKN-SG--YEGPWT 192
Query: 217 GNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNNQGLLQSDQEL 276
N + N YL L + N + D + Y L + L+Q + L
Sbjct: 193 ANNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSG-------YLQLPTDYSLIQDPKYL 245
Query: 277 FSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINM 310
+IV +A++Q FF+ F ++ +
Sbjct: 246 ----------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 97/274 (35%), Gaps = 33/274 (12%)
Query: 44 VRNALQQAMQSD------IRIGASLIRLHFHDCFVNGCDGSVLLDRGGNITQSEKDGGP- 96
V NA+ ++ D I G L+RL +H + GG ++ P
Sbjct: 22 VYNAIALKLREDDEYDNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPS 81
Query: 97 NTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNVLLGRRDGLRA 156
N GF ++ I +S D+ GP GR D
Sbjct: 82 NAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPE 135
Query: 157 NQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGT 216
+ + N +P + + F + ++ ++VAL GAHT G+ + SG Y T
Sbjct: 136 DTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLKN-SG--YEGPWT 192
Query: 217 GNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNNQGLLQSDQEL 276
N + N YL L + N + D + Y L + L+Q + L
Sbjct: 193 ANNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSG-------YMMLPTDYSLIQDPKYL 245
Query: 277 FSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINM 310
+IV +A++Q FF+ F ++ +
Sbjct: 246 ----------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 57/274 (20%), Positives = 97/274 (35%), Gaps = 33/274 (12%)
Query: 44 VRNALQQAMQSD------IRIGASLIRLHFHDCFVNGCDGSVLLDRGGNITQSEKDGGP- 96
V NA+ ++ D I G L+RL +H + GG ++ P
Sbjct: 22 VYNAIALKLREDDEYDNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPS 81
Query: 97 NTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNVLLGRRDGLRA 156
N GF ++ I +S D+ GP GR D
Sbjct: 82 NAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPE 135
Query: 157 NQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGT 216
+ + N +P + + F + ++ ++VAL GAHT G+ + SG ++ T
Sbjct: 136 DTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLKN-SGYEGPWDAT 194
Query: 217 GNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNNQGLLQSDQEL 276
N N YL L + N + D + Y L + L+Q + L
Sbjct: 195 NN--VFDNSFYLNLLNEDWKLEKNDANNEQWDSKSG-------YMMLPTDYSLIQDPKYL 245
Query: 277 FSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINM 310
+IV +A++Q FF+ F ++ +
Sbjct: 246 ----------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 22/149 (14%)
Query: 162 NSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGTGNPDP 221
N +P + + F + ++ ++VAL GAH G+ + SG + G G +
Sbjct: 138 NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN-SG----YEGGGANNV 192
Query: 222 TVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNNQGLLQSDQELFSTNG 281
N YL L + N + D + Y L + L+Q + L
Sbjct: 193 FTNEFYLNLLNEDWKLEKNDANNEQWDSKSG-------YMMLPTDYSLIQDPKYL----- 240
Query: 282 PAAIVAIVNNFASNQTAFFQQFVQSMINM 310
+IV +A++Q FF+ F ++ +
Sbjct: 241 -----SIVKEYANDQDKFFKDFSKAFEKL 264
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 22/149 (14%)
Query: 162 NSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGTGNPDP 221
N +P + + F + ++ ++VAL GAH G+ + SG + G G +
Sbjct: 139 NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN-SG----YEGGGANNV 193
Query: 222 TVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNNQGLLQSDQELFSTNG 281
N YL L + N + D + Y L + L+Q + L
Sbjct: 194 FTNEFYLNLLNEDWKLEKNDANNEQWDSKSG-------YMMLPTDYSLIQDPKYL----- 241
Query: 282 PAAIVAIVNNFASNQTAFFQQFVQSMINM 310
+IV +A++Q FF+ F ++ +
Sbjct: 242 -----SIVKEYANDQDKFFKDFSKAFEKL 265
>pdb|3GFG|A Chain A, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|B Chain B, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|C Chain C, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|D Chain D, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|E Chain E, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|F Chain F, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|G Chain G, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|H Chain H, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|I Chain I, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|J Chain J, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|K Chain K, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|L Chain L, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
Length = 367
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 206 FSGRLYNFNGTGNPD---PTVNGTYLTTLRQICPQNGNGSALANLDPTTAD 253
F G+L G+ P+VNG+YLT R+I G+AL P TA+
Sbjct: 287 FYGKLTTIRGSDKKTETIPSVNGSYLTYYRKIAESIREGAAL----PVTAE 333
>pdb|3GDO|A Chain A, Crystal Structure Of Putative Oxidoreductase Yvaa From
Bacillus Subtilis
pdb|3GDO|B Chain B, Crystal Structure Of Putative Oxidoreductase Yvaa From
Bacillus Subtilis
Length = 358
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 206 FSGRLYNFNGTGNPD---PTVNGTYLTTLRQICPQNGNGSALANLDPTTAD 253
F G+L G+ P+VNG+YLT R+I G+AL P TA+
Sbjct: 278 FYGKLTTIRGSDKKTETIPSVNGSYLTYYRKIAESIREGAAL----PVTAE 324
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 22/149 (14%)
Query: 162 NSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGTGNPDP 221
N +P + + F + ++ ++VAL GAH G+ + SG + G G +
Sbjct: 144 NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN-SG----YEGGGANNV 198
Query: 222 TVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNNQGLLQSDQELFSTNG 281
N YL L + N + D + Y L + L+Q + L
Sbjct: 199 FTNEFYLNLLNEDWKLEKNDANNEQWDSKSG-------YMMLPTDYSLIQDPKYL----- 246
Query: 282 PAAIVAIVNNFASNQTAFFQQFVQSMINM 310
+IV +A++Q FF+ F ++ +
Sbjct: 247 -----SIVKEYANDQDKFFKDFSKAFEKL 270
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 24/151 (15%)
Query: 162 NSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGTGNPDP 221
N +P + + F + ++ ++VAL GAH G+ + SG + G G
Sbjct: 141 NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN-SG----YEGPGGAAN 195
Query: 222 TV--NGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNNQGLLQSDQELFST 279
V N YL L + N + D + Y L N L+Q + L
Sbjct: 196 NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSG-------YMMLPTNYSLIQDPKYL--- 245
Query: 280 NGPAAIVAIVNNFASNQTAFFQQFVQSMINM 310
+IV +A++Q FF+ F ++ +
Sbjct: 246 -------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 140 GGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFG 199
GG LGR D + A+ + +P P DS+ ++ ++ G ++V+L +H+
Sbjct: 116 GGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSILARMGDAGFSPVEVVSLLASHSIA 172
Query: 200 RA 201
A
Sbjct: 173 AA 174
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 56/274 (20%), Positives = 94/274 (34%), Gaps = 33/274 (12%)
Query: 44 VRNALQQAMQSD------IRIGASLIRLHFHDCFVNGCDGSVLLDRGGNITQSEKDGGP- 96
V NA+ ++ D I G L+RL +H + GG ++ P
Sbjct: 21 VYNAIALKLREDDEADNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPS 80
Query: 97 NTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNVLLGRRDGLRA 156
N GF ++ I +S D+ GP GR D
Sbjct: 81 NAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPE 134
Query: 157 NQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGT 216
+ + N +P + + F + ++ ++VAL GAH G+ + SG F
Sbjct: 135 DTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKR-SGYEGPFGAA 193
Query: 217 GNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNNQGLLQSDQEL 276
N N YL L + N + D + Y L + L+Q + L
Sbjct: 194 NN--VFTNEFYLNLLNEDWKLEKNDANNEQWDSKSG-------YMMLPTDYSLIQDPKYL 244
Query: 277 FSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINM 310
+IV +A++Q FF+ F ++ +
Sbjct: 245 ----------SIVKEYANDQDRFFKDFSKAFEKL 268
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 18/95 (18%)
Query: 140 GGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFG 199
GG LGR D + A+ + +P P DS+ ++ ++ G ++V L +H+
Sbjct: 116 GGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 200 RAQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQI 234
A +V DP++ GT + Q+
Sbjct: 173 AAD-KV--------------DPSIPGTPFDSTPQV 192
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 20/149 (13%)
Query: 162 NSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGTGNPDP 221
N +P + + F + ++ ++VAL GAH G+ + SG F N
Sbjct: 134 NGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKR-SGYEGPFGAANN--V 190
Query: 222 TVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNNQGLLQSDQELFSTNG 281
N YL L + N + D + Y L + L+Q + L
Sbjct: 191 FTNEFYLNLLNEDWKLEKNDANNEQWDSKSG-------YMMLPTDYSLIQDPKYL----- 238
Query: 282 PAAIVAIVNNFASNQTAFFQQFVQSMINM 310
+IV +A++Q FF+ F ++ +
Sbjct: 239 -----SIVKEYANDQDKFFKDFSKAFEKL 262
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 140 GGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFG 199
GG LGR D + A+ + +P P DS+ ++ ++ G ++V L +H+
Sbjct: 116 GGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSILARMGDAGFSPVEVVYLLASHSIA 172
Query: 200 RA 201
A
Sbjct: 173 AA 174
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 140 GGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFG 199
GG LGR D + A+ + +P P DS+ ++ ++ G ++V L +H+
Sbjct: 116 GGVRIPFFLGRPDAVAAS---PDHLVPGPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 200 RA 201
A
Sbjct: 173 AA 174
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 140 GGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFG 199
GG LGR D + A+ + +P P DS+ ++ ++ G ++V L +H+
Sbjct: 116 GGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 200 RA 201
A
Sbjct: 173 AA 174
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 140 GGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFG 199
GG LGR D + A+ + +P P DS+ ++ ++ G ++V L +H+
Sbjct: 116 GGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 200 RA 201
A
Sbjct: 173 AA 174
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 140 GGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFG 199
GG LGR D + A+ + +P P DS+ ++ ++ G ++V L +H+
Sbjct: 116 GGVRIPFFLGRPDAVAAS---PDHLVPGPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 200 RA 201
A
Sbjct: 173 AA 174
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 140 GGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFG 199
GG LGR D + A+ + +P P DS+ ++ ++ G ++V L +H+
Sbjct: 116 GGVRIPFFLGRPDAVAAS---PDHLVPGPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 200 RA 201
A
Sbjct: 173 AA 174
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 140 GGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFG 199
GG LGR D + A+ + +P P DS+ ++ ++ G ++V L +H+
Sbjct: 116 GGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 200 RA 201
A
Sbjct: 173 AA 174
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 140 GGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFG 199
GG LGR D + A+ + +P P DS+ ++ ++ G ++V L +H+
Sbjct: 116 GGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 200 RA 201
A
Sbjct: 173 AA 174
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 140 GGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFG 199
GG LGR D + A+ + +P P DS+ ++ ++ G ++V L +H+
Sbjct: 116 GGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 200 RA 201
A
Sbjct: 173 AA 174
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 140 GGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFG 199
GG LGR D + A+ + +P P DS+ ++ ++ G ++V L +H+
Sbjct: 116 GGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 200 RA 201
A
Sbjct: 173 AA 174
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 56/274 (20%), Positives = 94/274 (34%), Gaps = 33/274 (12%)
Query: 44 VRNALQQAMQSD------IRIGASLIRLHFHDCFVNGCDGSVLLDRGGNITQSEKDGGP- 96
V NA+ ++ D I G L+RL +H + GG ++ P
Sbjct: 24 VYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPS 83
Query: 97 NTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNVLLGRRDGLRA 156
N GF ++ I +S D+ GP GR D
Sbjct: 84 NAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPE 137
Query: 157 NQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGT 216
+ + N +P + + F + ++ ++VAL GAH G+ + SG F
Sbjct: 138 DTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN-SGYEGPFGAA 196
Query: 217 GNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNNQGLLQSDQEL 276
N N YL L + N + D + Y L + L+Q + L
Sbjct: 197 NN--VFTNEFYLNLLNEDWKLEKNDANNEQWDSKSG-------YMMLPTDYSLIQDPKYL 247
Query: 277 FSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINM 310
+IV +A++Q FF+ F ++ +
Sbjct: 248 ----------SIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|3UT2|A Chain A, Crystal Structure Of Fungal Magkatg2
pdb|3UT2|B Chain B, Crystal Structure Of Fungal Magkatg2
Length = 764
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 157 NQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVAL-SGAHTFGRAQCRV 205
N G N + P P S ++ F +G++ T+ VAL +G H FG+ V
Sbjct: 253 NPEGPNGT-PDPAASAKDIREAFGRMGMNDTETVALIAGGHAFGKTHGAV 301
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 24/151 (15%)
Query: 162 NSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGTGNPDP 221
N +P + + F + ++ ++VAL GAH G+ + SG + G G
Sbjct: 138 NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN-SG----YEGPGGAAN 192
Query: 222 TV--NGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNNQGLLQSDQELFST 279
V N YL L + N + D + Y L + L+Q + L
Sbjct: 193 NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSG-------YMMLPTDYSLIQDPKYL--- 242
Query: 280 NGPAAIVAIVNNFASNQTAFFQQFVQSMINM 310
+IV +A++Q FF+ F ++ +
Sbjct: 243 -------SIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 24/151 (15%)
Query: 162 NSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGTGNPDP 221
N +P + + F + ++ ++VAL GAH G+ + SG + G G
Sbjct: 139 NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN-SG----YEGPGGAAN 193
Query: 222 TV--NGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNNQGLLQSDQELFST 279
V N YL L + N + D + Y L + L+Q + L
Sbjct: 194 NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSG-------YMMLPTDYSLIQDPKYL--- 243
Query: 280 NGPAAIVAIVNNFASNQTAFFQQFVQSMINM 310
+IV +A++Q FF+ F ++ +
Sbjct: 244 -------SIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 24/151 (15%)
Query: 162 NSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGTGNPDP 221
N +P + + F + ++ ++VAL GAH G+ + SG + G G
Sbjct: 141 NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN-SG----YEGPGGAAN 195
Query: 222 TV--NGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNNQGLLQSDQELFST 279
V N YL L + N + D + Y L + L+Q + L
Sbjct: 196 NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSG-------YMMLPTDYSLIQDPKYL--- 245
Query: 280 NGPAAIVAIVNNFASNQTAFFQQFVQSMINM 310
+IV +A++Q FF+ F ++ +
Sbjct: 246 -------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 96/276 (34%), Gaps = 37/276 (13%)
Query: 44 VRNALQQAMQSD------IRIGASLIRLHFHDCFVNGCDGSVLLDRGGNITQSEKDGGP- 96
V NA+ ++ D I G L+RL +H + GG ++ P
Sbjct: 24 VYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPS 83
Query: 97 NTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNVLLGRRDGLRA 156
N GF ++ I +S D+ GP GR D
Sbjct: 84 NAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPE 137
Query: 157 NQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGT 216
+ + N +P + + F + ++ ++VAL GAH G+ + SG + G
Sbjct: 138 DTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN-SG----YEGP 192
Query: 217 GNPDPTV--NGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNNQGLLQSDQ 274
G V N YL L + N + D + Y L + L+Q +
Sbjct: 193 GGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSG-------YMMLPTDYSLIQDPK 245
Query: 275 ELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINM 310
L +IV +A++Q FF+ F ++ +
Sbjct: 246 YL----------SIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 24/151 (15%)
Query: 162 NSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGTGNPDP 221
N +P + + F + ++ ++VAL GAH G+ + SG + G G
Sbjct: 141 NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN-SG----YEGPGGAAN 195
Query: 222 TV--NGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNNQGLLQSDQELFST 279
V N YL L + N + D + Y L + L+Q + L
Sbjct: 196 NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSG-------YMMLPTDYSLIQDPKYL--- 245
Query: 280 NGPAAIVAIVNNFASNQTAFFQQFVQSMINM 310
+IV +A++Q FF+ F ++ +
Sbjct: 246 -------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 20/149 (13%)
Query: 162 NSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGTGNPDP 221
N +P + + F + ++ ++VAL GAH G+ + SG + N
Sbjct: 138 NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN-SGYEGPWGAANN--V 194
Query: 222 TVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNNQGLLQSDQELFSTNG 281
N YL L + N + D + Y +L + L+Q + L
Sbjct: 195 FTNEFYLNLLNEDWKLEKNDANNEQWDSKSG-------YMHLPTDYSLIQDPKYL----- 242
Query: 282 PAAIVAIVNNFASNQTAFFQQFVQSMINM 310
+IV +A++Q FF+ F ++ +
Sbjct: 243 -----SIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 56/274 (20%), Positives = 94/274 (34%), Gaps = 33/274 (12%)
Query: 44 VRNALQQAMQSD------IRIGASLIRLHFHDCFVNGCDGSVLLDRGGNITQSEKDGGP- 96
V NA+ ++ D I G L+RL +H + GG ++ P
Sbjct: 24 VYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPS 83
Query: 97 NTNSARGFGVVDNIKTAVENSCPGVVSCADIXXXXXXXXXXXXGGPSWNVLLGRRDGLRA 156
N GF ++ I +S D+ GP GR D
Sbjct: 84 NAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPE 137
Query: 157 NQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGT 216
+ + N +P + + F + ++ ++VAL GAH G+ + SG +
Sbjct: 138 DTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN-SGYEGPWGAA 196
Query: 217 GNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNNQGLLQSDQEL 276
N N YL L + N + D + Y L N L+Q + L
Sbjct: 197 NN--VFTNEFYLNLLNEDWKLEKNDANNEQWDSKSG-------YMMLPTNYSLIQDPKYL 247
Query: 277 FSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINM 310
+IV +A++Q FF+ F ++ +
Sbjct: 248 ----------SIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 140 GGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFG 199
GG LGR D + A+ + +P P DS+ ++ ++ G ++V L +H+
Sbjct: 116 GGVRIPFFLGRPDAVAAS---PDHLVPEPQDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 200 RA 201
A
Sbjct: 173 AA 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,532,082
Number of Sequences: 62578
Number of extensions: 395287
Number of successful extensions: 1392
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1303
Number of HSP's gapped (non-prelim): 77
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)