Query 019976
Match_columns 333
No_of_seqs 192 out of 1495
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:02:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 2E-108 4E-113 786.8 26.3 299 24-331 21-324 (324)
2 cd00693 secretory_peroxidase H 100.0 1E-101 3E-106 737.3 26.0 298 27-330 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 1.3E-72 2.7E-77 521.3 10.7 229 44-295 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 7.8E-70 1.7E-74 514.0 22.2 231 42-327 15-256 (289)
5 cd00691 ascorbate_peroxidase A 100.0 3.6E-67 7.8E-72 490.4 20.6 231 39-316 11-251 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 8.6E-66 1.9E-70 479.6 21.0 232 30-316 3-248 (250)
7 cd00692 ligninase Ligninase an 100.0 4.2E-64 9.1E-69 482.7 22.4 237 40-332 16-288 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 4.4E-63 9.5E-68 460.8 21.0 220 42-316 18-248 (251)
9 cd00314 plant_peroxidase_like 100.0 1.3E-59 2.7E-64 440.3 19.9 224 43-312 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 3.4E-55 7.3E-60 427.6 19.5 259 42-321 45-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 9.7E-53 2.1E-57 433.5 19.5 255 42-318 55-405 (716)
12 cd08201 plant_peroxidase_like_ 100.0 1.2E-49 2.6E-54 370.6 14.2 214 49-312 32-264 (264)
13 PRK15061 catalase/hydroperoxid 100.0 9E-49 2E-53 402.1 20.0 266 33-319 47-412 (726)
14 cd08200 catalase_peroxidase_2 100.0 4.2E-38 9.2E-43 296.6 18.3 221 46-314 17-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 3.9E-33 8.5E-38 288.4 17.9 221 43-315 429-710 (716)
16 PRK15061 catalase/hydroperoxid 100.0 1.6E-32 3.4E-37 282.5 18.4 221 46-315 442-722 (726)
17 COG0376 KatG Catalase (peroxid 100.0 4E-28 8.7E-33 240.1 17.8 250 43-314 71-416 (730)
18 COG0376 KatG Catalase (peroxid 99.4 6.1E-12 1.3E-16 125.9 13.4 217 46-314 452-725 (730)
19 PTZ00411 transaldolase-like pr 75.9 21 0.00045 35.3 9.6 130 139-303 180-326 (333)
20 PRK12346 transaldolase A; Prov 62.8 71 0.0015 31.4 10.1 76 121-197 149-240 (316)
21 PRK05269 transaldolase B; Prov 58.6 85 0.0018 30.8 9.8 49 139-187 170-221 (318)
22 TIGR00874 talAB transaldolase. 58.6 87 0.0019 30.7 9.9 129 138-301 167-311 (317)
23 PRK12309 transaldolase/EF-hand 55.9 1.7E+02 0.0037 29.5 11.7 64 122-186 155-224 (391)
24 PF11895 DUF3415: Domain of un 52.5 12 0.00027 29.3 2.3 19 298-316 2-20 (80)
25 cd00957 Transaldolase_TalAB Tr 47.4 99 0.0022 30.3 8.3 77 103-187 137-219 (313)
26 KOG0400 40S ribosomal protein 27.3 44 0.00096 28.7 2.0 33 170-202 31-64 (151)
27 cd00439 Transaldolase Transald 24.9 71 0.0015 30.1 3.2 77 102-187 127-210 (252)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.9e-108 Score=786.81 Aligned_cols=299 Identities=45% Similarity=0.811 Sum_probs=284.4
Q ss_pred cccccCcchhccCCccHHHHHHHHHHHHHHhCccchhhhHHhhhccccccCCCcceeecCCCCCCCcccCCCCCCCchhh
Q 019976 24 SQAQLNSSFYATTCPNVTTIVRNALQQAMQSDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGNITQSEKDGGPNTNSARG 103 (333)
Q Consensus 24 ~~~~l~~~fY~~sCP~~e~iV~~~v~~~~~~~~~~aa~llRL~FHDcfv~GcDgSiLl~~~~~~~~~E~~~~~N~~~~~g 103 (333)
+.++|+++||++|||++|+||+++|++++.++|+++|++|||+||||||+||||||||+++ ..||++++|. +++|
T Consensus 21 ~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~----~~Ek~a~~N~-~l~G 95 (324)
T PLN03030 21 QGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS----NTEKTALPNL-LLRG 95 (324)
T ss_pred hhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC----cccccCCCCc-Ccch
Confidence 4567999999999999999999999999999999999999999999999999999999963 4799999998 7899
Q ss_pred HHHHHHHHHHhhhcCCCCCchhhHHHhhhhhhhhhcCCCceeEecCCCCCCCCCcCCCCCCCCCCCCChHHHHHHHHHCC
Q 019976 104 FGVVDNIKTAVENSCPGVVSCADILALAAESSVSLAGGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVG 183 (333)
Q Consensus 104 ~~~I~~iK~~le~~cp~~VScADilalAardaV~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~G 183 (333)
|++|+.||++||++||++|||||||||||||||+++|||.|+|++||||+++|.+.++. +||+|+.++++|++.|+++|
T Consensus 96 f~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~G 174 (324)
T PLN03030 96 YDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAKG 174 (324)
T ss_pred HHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999887775 89999999999999999999
Q ss_pred CChhhhhhcccccccccccccccccccccCCCCC-CCCCCCchHHHHHHhhcCCCCCCCCCcccCCCCCCCCcChHHHHH
Q 019976 184 LDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGTG-NPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTN 262 (333)
Q Consensus 184 lt~~dlVaLsGaHTiG~~hc~~f~~Rly~f~g~~-~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~FDn~Yy~~ 262 (333)
|+.+|||+||||||||++||.+|.+|||||+|++ .+||+||+.|++.|++.||..+++.+.+++|+.||.+|||+||+|
T Consensus 175 l~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~n 254 (324)
T PLN03030 175 LNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSN 254 (324)
T ss_pred CCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHH
Confidence 9999999999999999999999999999999875 579999999999999999964333457889999999999999999
Q ss_pred hhhCcccccchhhhhcCCCchhHHHHHHHhhhcH----HHHHHHHHHHHHHhhcCCCCCCCCCcccccccccc
Q 019976 263 LQNNQGLLQSDQELFSTNGPAAIVAIVNNFASNQ----TAFFQQFVQSMINMGNISPLTGSNGEIRADCKKVN 331 (333)
Q Consensus 263 l~~~~glL~SD~~L~~d~~~~~t~~~V~~yA~d~----~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~~~n 331 (333)
|++++|+|+|||+|++| + +|+++|++||.|+ +.|+++|++||+|||+|+|+||.+|||||+|+++|
T Consensus 255 ll~~rGlL~SDq~L~~d--~-~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 255 LKNGRGILESDQKLWTD--A-STRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred HHhcCCCcCCchHhhcC--c-cHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 99999999999999999 9 9999999999875 59999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.4e-101 Score=737.31 Aligned_cols=298 Identities=57% Similarity=0.984 Sum_probs=287.4
Q ss_pred ccCcchhccCCccHHHHHHHHHHHHHHhCccchhhhHHhhhccccccCCCcceeecCCCCCCCcccCCCCCCCchhhHHH
Q 019976 27 QLNSSFYATTCPNVTTIVRNALQQAMQSDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGNITQSEKDGGPNTNSARGFGV 106 (333)
Q Consensus 27 ~l~~~fY~~sCP~~e~iV~~~v~~~~~~~~~~aa~llRL~FHDcfv~GcDgSiLl~~~~~~~~~E~~~~~N~~~~~g~~~ 106 (333)
||+++||+++||++|+||+++|++.+.++++++|++|||+||||||+||||||||+++++ ..+|+++++|. +++||++
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~-~~~E~~~~~N~-~l~g~~~ 78 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTAN-NTSEKDAPPNL-SLRGFDV 78 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCC-CchhccCCCCC-CcchhHH
Confidence 599999999999999999999999999999999999999999999999999999998765 67899999999 6799999
Q ss_pred HHHHHHHhhhcCCCCCchhhHHHhhhhhhhhhcCCCceeEecCCCCCCCCCcCCCCCCCCCCCCChHHHHHHHHHCCCCh
Q 019976 107 VDNIKTAVENSCPGVVSCADILALAAESSVSLAGGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDT 186 (333)
Q Consensus 107 I~~iK~~le~~cp~~VScADilalAardaV~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Glt~ 186 (333)
|+.||+++|+.||++||||||||||||+||+++|||.|+|++||+|+.++.+..+ +.||+|+.+++++++.|+++||++
T Consensus 79 i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~ 157 (298)
T cd00693 79 IDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTV 157 (298)
T ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCCCH
Confidence 9999999999999999999999999999999999999999999999998887766 789999999999999999999999
Q ss_pred hhhhhcccccccccccccccccccccCCCCCCCCCCCchHHHHHHhhcCCCCCCCCCcccCCCCCCCCcChHHHHHhhhC
Q 019976 187 TDLVALSGAHTFGRAQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNN 266 (333)
Q Consensus 187 ~dlVaLsGaHTiG~~hc~~f~~Rly~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~ 266 (333)
+|||+|+||||||++||.+|.+|||||+|++.+||+||+.|+..|++.||..+++.+.++||+.||.+|||+||+||+.+
T Consensus 158 ~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~ 237 (298)
T cd00693 158 TDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAG 237 (298)
T ss_pred HHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHHhc
Confidence 99999999999999999999999999999988999999999999999999765556678999999999999999999999
Q ss_pred cccccchhhhhcCCCchhHHHHHHHhhhcHHHHHHHHHHHHHHhhcCCCCCCCCCccccccccc
Q 019976 267 QGLLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNISPLTGSNGEIRADCKKV 330 (333)
Q Consensus 267 ~glL~SD~~L~~d~~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~~~ 330 (333)
+|+|+|||+|+.| + +|+++|++||.||+.|+++|++||+||++|+|+||.+||||++|+++
T Consensus 238 ~glL~SD~~L~~d--~-~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 238 RGLLTSDQALLSD--P-RTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred ccCccCCHHhccC--c-cHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 9999999999999 9 99999999999999999999999999999999999999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=1.3e-72 Score=521.33 Aligned_cols=229 Identities=51% Similarity=0.888 Sum_probs=209.6
Q ss_pred HHHHHHHHHHhCccchhhhHHhhhccccc-cCCCcceeecCCCCCCCcccCCCCCCCchhhHHHHHHHHHHhhhcCCCCC
Q 019976 44 VRNALQQAMQSDIRIGASLIRLHFHDCFV-NGCDGSVLLDRGGNITQSEKDGGPNTNSARGFGVVDNIKTAVENSCPGVV 122 (333)
Q Consensus 44 V~~~v~~~~~~~~~~aa~llRL~FHDcfv-~GcDgSiLl~~~~~~~~~E~~~~~N~~~~~g~~~I~~iK~~le~~cp~~V 122 (333)
||++|++++.++++++|+||||+|||||+ +|||||||+. ..|+++++|.++.+++++|+.||+++|++||++|
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~------~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~V 74 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF------SAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVV 74 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS------TTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc------ccccccccccCcceeeechhhHHhhhcccccCCC
Confidence 79999999999999999999999999999 9999999983 5799999999655599999999999999999999
Q ss_pred chhhHHHhhhhhhhhhcCCCceeEecCCCCCCCCCcCCCCCCCCCCCCChHHHHHHHHHCCCChhhhhhccccccccccc
Q 019976 123 SCADILALAAESSVSLAGGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAHTFGRAQ 202 (333)
Q Consensus 123 ScADilalAardaV~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Glt~~dlVaLsGaHTiG~~h 202 (333)
||||||+||||+||+.+|||.|+|++||+|+.++++.++ .+||.|+.++++|++.|+++|||++|||||+||||||++|
T Consensus 75 S~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~ 153 (230)
T PF00141_consen 75 SCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAH 153 (230)
T ss_dssp -HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEES
T ss_pred CHHHHHHHHhhhccccccccccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcceecccccccce
Confidence 999999999999999999999999999999999999766 6799999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCCCCCCchHHHHHHhhcCCCCCCCCCcccCCCCCCCCcChHHHHHhhhCcccccchhhhhcCCCc
Q 019976 203 CRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNNQGLLQSDQELFSTNGP 282 (333)
Q Consensus 203 c~~f~~Rly~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~~ 282 (333)
|.+|. ||| + .+||.||+.|+.. .| ..++++ .+++| ||.+|||+||++|+.++|+|+||++|++| +
T Consensus 154 c~~f~-rl~-~----~~dp~~d~~~~~~---~C-~~~~~~-~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d--~ 218 (230)
T PF00141_consen 154 CSSFS-RLY-F----PPDPTMDPGYAGQ---NC-NSGGDN-GVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLND--P 218 (230)
T ss_dssp GGCTG-GTS-C----SSGTTSTHHHHHH---SS-STSGCT-CEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHS--T
T ss_pred ecccc-ccc-c----cccccccccccee---cc-CCCccc-ccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcC--H
Confidence 99999 999 5 5799999999988 99 433333 78899 99999999999999999999999999999 9
Q ss_pred hhHHHHHHHhhhc
Q 019976 283 AAIVAIVNNFASN 295 (333)
Q Consensus 283 ~~t~~~V~~yA~d 295 (333)
+|+++|++||+|
T Consensus 219 -~t~~~V~~yA~d 230 (230)
T PF00141_consen 219 -ETRPIVERYAQD 230 (230)
T ss_dssp -THHHHHHHHHHT
T ss_pred -HHHHHHHHHhcC
Confidence 999999999986
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=7.8e-70 Score=513.98 Aligned_cols=231 Identities=27% Similarity=0.474 Sum_probs=209.2
Q ss_pred HHHHHHHHHHHHhCccchhhhHHhhhcccc-------ccCCCcceeecCCCCCCCcccCCCCCCCchhhHHHHHHHHHHh
Q 019976 42 TIVRNALQQAMQSDIRIGASLIRLHFHDCF-------VNGCDGSVLLDRGGNITQSEKDGGPNTNSARGFGVVDNIKTAV 114 (333)
Q Consensus 42 ~iV~~~v~~~~~~~~~~aa~llRL~FHDcf-------v~GcDgSiLl~~~~~~~~~E~~~~~N~~~~~g~~~I~~iK~~l 114 (333)
+.++++|. .+.++|+++|.+|||+||||| ++||||||+++ .|+++++|.++.+||++|++||+++
T Consensus 15 ~~~~~~~~-~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~-------~E~~~~~N~gL~~g~~vid~iK~~~ 86 (289)
T PLN02608 15 EKARRDLR-ALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE-------EEYSHGANNGLKIAIDLCEPVKAKH 86 (289)
T ss_pred HHHHHHHH-HHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc-------cccCCccccchHHHHHHHHHHHHHc
Confidence 45667774 467789999999999999999 99999999973 5999999995557999999999987
Q ss_pred hhcCCCCCchhhHHHhhhhhhhhhcCCCceeEecCCCCCCCCCcCCCCCCCCCCCCChHHHHHHHHHCCCChhhhhhccc
Q 019976 115 ENSCPGVVSCADILALAAESSVSLAGGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSG 194 (333)
Q Consensus 115 e~~cp~~VScADilalAardaV~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Glt~~dlVaLsG 194 (333)
++|||||||+||||+||+.+|||.|+|++||+|++++++ +++||+|+.+++++++.|+++||+++|||+|+|
T Consensus 87 -----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsG 158 (289)
T PLN02608 87 -----PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPE---EGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSG 158 (289)
T ss_pred -----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCc---cCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcc
Confidence 389999999999999999999999999999999999864 468999999999999999999999999999999
Q ss_pred ccccccccccccccccccCCCCCCCCCCCchHHHHHHhhcCCCCCCCCCcccCCCCCCCCcChHHHHHhhhC--ccc--c
Q 019976 195 AHTFGRAQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNN--QGL--L 270 (333)
Q Consensus 195 aHTiG~~hc~~f~~Rly~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~--~gl--L 270 (333)
|||||++||. |+ +|.| +++ .||.+|||+||++|+.+ +|+ |
T Consensus 159 AHTiG~ahc~----r~-g~~g------------------------------~~~-~Tp~~FDN~Yy~~ll~~~~~gll~L 202 (289)
T PLN02608 159 GHTLGRAHPE----RS-GFDG------------------------------PWT-KEPLKFDNSYFVELLKGESEGLLKL 202 (289)
T ss_pred cccccccccc----CC-CCCC------------------------------CCC-CCCCccChHHHHHHHcCCcCCcccc
Confidence 9999999995 55 4422 012 69999999999999998 788 7
Q ss_pred cchhhhhcCCCchhHHHHHHHhhhcHHHHHHHHHHHHHHhhcCCCCCCCCCcccccc
Q 019976 271 QSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNISPLTGSNGEIRADC 327 (333)
Q Consensus 271 ~SD~~L~~d~~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C 327 (333)
+||++|+.| + +|+++|+.||.||++|+++|++||+||++|+|+||++||+.+.-
T Consensus 203 ~SD~~L~~d--~-~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~ 256 (289)
T PLN02608 203 PTDKALLED--P-EFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKST 256 (289)
T ss_pred ccCHhhhcC--h-hHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccC
Confidence 999999999 9 99999999999999999999999999999999999999998754
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=3.6e-67 Score=490.36 Aligned_cols=231 Identities=24% Similarity=0.412 Sum_probs=209.1
Q ss_pred cHHHHHHHHHHHHHHhCccchhhhHHhhhccccccCCCcceeecCCCCC--CCcccCCCCCCCchhhHHHHHHHHHHhhh
Q 019976 39 NVTTIVRNALQQAMQSDIRIGASLIRLHFHDCFVNGCDGSVLLDRGGNI--TQSEKDGGPNTNSARGFGVVDNIKTAVEN 116 (333)
Q Consensus 39 ~~e~iV~~~v~~~~~~~~~~aa~llRL~FHDcfv~GcDgSiLl~~~~~~--~~~E~~~~~N~~~~~g~~~I~~iK~~le~ 116 (333)
..++||+++|++.+. +++++|++|||+||||| +||+|+++++..++ +.+|+++++|.++.+||++|++||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~--~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~-- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSG--TYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY-- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHh--ccccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc--
Confidence 457899999999999 99999999999999999 48888877543221 347999999996669999999999986
Q ss_pred cCCCCCchhhHHHhhhhhhhhhcCCCceeEecCCCCCCCCCcCCCCCCCCCCCCChHHHHHHHHHCCCChhhhhhccccc
Q 019976 117 SCPGVVSCADILALAAESSVSLAGGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSGAH 196 (333)
Q Consensus 117 ~cp~~VScADilalAardaV~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Glt~~dlVaLsGaH 196 (333)
| +||||||||||||+||+.+|||.|+|++||+|+.++....++++||.|+.+++++++.|+++||+++|||+|+|||
T Consensus 86 --~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGaH 162 (253)
T cd00691 86 --P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGAH 162 (253)
T ss_pred --C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcccc
Confidence 4 8999999999999999999999999999999999998877778899999999999999999999999999999999
Q ss_pred ccccccccccccccccCCCCCCCCCCCchHHHHHHhhcCCCCCCCCCcccCCCCCCCCcChHHHHHhhhCcc--------
Q 019976 197 TFGRAQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNNQG-------- 268 (333)
Q Consensus 197 TiG~~hc~~f~~Rly~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~~g-------- 268 (333)
|||++||.. ++|.|. + ..||.+|||+||+||+.++|
T Consensus 163 TiG~a~c~~-----~~~~g~------------------------------~-~~tp~~FDn~Yy~~ll~~~g~~~~~~~~ 206 (253)
T cd00691 163 TLGRCHKER-----SGYDGP------------------------------W-TKNPLKFDNSYFKELLEEDWKLPTPGLL 206 (253)
T ss_pred eeecccccC-----CCCCCC------------------------------C-CCCCCcccHHHHHHHhcCCCccCcCcce
Confidence 999999953 243321 1 15999999999999999999
Q ss_pred cccchhhhhcCCCchhHHHHHHHhhhcHHHHHHHHHHHHHHhhcCCCC
Q 019976 269 LLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNISPL 316 (333)
Q Consensus 269 lL~SD~~L~~d~~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~ 316 (333)
+|+||++|+.| + +|+++|+.||.|+++|+++|++||+||++++|.
T Consensus 207 ~L~sD~~L~~d--~-~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 207 MLPTDKALLED--P-KFRPYVELYAKDQDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred echhhHHHHcC--c-cHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999 9 999999999999999999999999999999985
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=8.6e-66 Score=479.62 Aligned_cols=232 Identities=27% Similarity=0.510 Sum_probs=208.4
Q ss_pred cchhccC--CccHHHHHHHHHHHHHHhCccchhhhHHhhhc-----ccccc--CCCcceeecCCCCCCCcccCCCCCCCc
Q 019976 30 SSFYATT--CPNVTTIVRNALQQAMQSDIRIGASLIRLHFH-----DCFVN--GCDGSVLLDRGGNITQSEKDGGPNTNS 100 (333)
Q Consensus 30 ~~fY~~s--CP~~e~iV~~~v~~~~~~~~~~aa~llRL~FH-----Dcfv~--GcDgSiLl~~~~~~~~~E~~~~~N~~~ 100 (333)
.+||..+ |+.+++.|++.+++.+ .+++++|.||||+|| ||+++ ||||||. +.+|+++++|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~-------~~~E~~~~~N~gl 74 (250)
T PLN02364 3 KNYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMR-------FDAEQAHGANSGI 74 (250)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCcccc-------ccccccCCCccCH
Confidence 3566543 8899999999999988 788999999999999 88887 9999993 3579999999966
Q ss_pred hhhHHHHHHHHHHhhhcCCCCCchhhHHHhhhhhhhhhcCCCceeEecCCCCCCCCCcCCCCCCCCCCCCChHHHHHHHH
Q 019976 101 ARGFGVVDNIKTAVENSCPGVVSCADILALAAESSVSLAGGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFS 180 (333)
Q Consensus 101 ~~g~~~I~~iK~~le~~cp~~VScADilalAardaV~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~ 180 (333)
.+||++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|++++++ +++||.|+.++++|++.|+
T Consensus 75 ~~~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~lP~p~~~~~~l~~~F~ 146 (250)
T PLN02364 75 HIALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPP---EGRLPDATKGCDHLRDVFA 146 (250)
T ss_pred HHHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccc---cCCCCCCCcCHHHHHHHHH
Confidence 69999999999998 489999999999999999999999999999999999875 3679999999999999999
Q ss_pred H-CCCChhhhhhcccccccccccccccccccccCCCCCCCCCCCchHHHHHHhhcCCCCCCCCCcccCCCCCCCCcChHH
Q 019976 181 A-VGLDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNY 259 (333)
Q Consensus 181 ~-~Glt~~dlVaLsGaHTiG~~hc~~f~~Rly~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~FDn~Y 259 (333)
+ +|||++|||+|+||||||++|| .|+ +|.|. ++ .||.+|||+|
T Consensus 147 ~~~Gl~~~d~VaLsGaHTiG~~hc----~r~-~~~g~------------------------------~~-~tp~~fDn~Y 190 (250)
T PLN02364 147 KQMGLSDKDIVALSGAHTLGRCHK----DRS-GFEGA------------------------------WT-SNPLIFDNSY 190 (250)
T ss_pred HhcCCCHHHheeeecceeeccccC----CCC-CCCCC------------------------------CC-CCCCccchHH
Confidence 7 5999999999999999999999 354 43221 12 6899999999
Q ss_pred HHHhhhC--ccccc--chhhhhcCCCchhHHHHHHHhhhcHHHHHHHHHHHHHHhhcCCCC
Q 019976 260 YTNLQNN--QGLLQ--SDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNISPL 316 (333)
Q Consensus 260 y~~l~~~--~glL~--SD~~L~~d~~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~ 316 (333)
|++|+.+ +|+|. ||++|+.| + +|+.+|+.||.|++.|+++|++||+||++|++-
T Consensus 191 y~~ll~~~~~gll~l~sD~~L~~d--~-~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 191 FKELLSGEKEGLLQLVSDKALLDD--P-VFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred HHHHhcCCcCCCccccchHHHccC--c-hHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 9999999 89875 99999999 9 999999999999999999999999999999973
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=4.2e-64 Score=482.71 Aligned_cols=237 Identities=25% Similarity=0.391 Sum_probs=212.0
Q ss_pred HHHHHHHHHHHHHHhCc---cchhhhHHhhhccccc------------cCCCcceeecCCCCCCCcccCCCCCCCchhhH
Q 019976 40 VTTIVRNALQQAMQSDI---RIGASLIRLHFHDCFV------------NGCDGSVLLDRGGNITQSEKDGGPNTNSARGF 104 (333)
Q Consensus 40 ~e~iV~~~v~~~~~~~~---~~aa~llRL~FHDcfv------------~GcDgSiLl~~~~~~~~~E~~~~~N~~~~~g~ 104 (333)
+|..|++.|++.+..+. ..|+.+|||+||||++ +||||||||++ ..|+++++|.+ ++
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~-----~~E~~~~~N~g-L~-- 87 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFD-----DIETAFHANIG-LD-- 87 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCC-----cccccCCCCCC-HH--
Confidence 68899999999998554 4677899999999996 79999999974 36999999984 55
Q ss_pred HHHHHHHHHhhhcCCCCCchhhHHHhhhhhhhhh-cCCCceeEecCCCCCCCCCcCCCCCCCCCCCCChHHHHHHHHHCC
Q 019976 105 GVVDNIKTAVENSCPGVVSCADILALAAESSVSL-AGGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVG 183 (333)
Q Consensus 105 ~~I~~iK~~le~~cp~~VScADilalAardaV~~-~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~G 183 (333)
++|+.||..+|+.| |||||||+||||+||+. .|||.|+|++||+|++++.+. ++||.|+.++++|++.|+++|
T Consensus 88 ~vvd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~---g~LP~p~~sv~~l~~~F~~~G 161 (328)
T cd00692 88 EIVEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPD---GLVPEPFDSVDKILARFADAG 161 (328)
T ss_pred HHHHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcc---cCCCCCCCCHHHHHHHHHHcC
Confidence 89999999999998 99999999999999995 599999999999999998653 689999999999999999999
Q ss_pred CChhhhhhcccccccccccccccccccccCCCCCCCCCCCchHHHHHHhhcCCCCCCCCCcccCCCCCCCCcChHHHHHh
Q 019976 184 LDTTDLVALSGAHTFGRAQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNL 263 (333)
Q Consensus 184 lt~~dlVaLsGaHTiG~~hc~~f~~Rly~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~FDn~Yy~~l 263 (333)
|+.+|||+|+||||||++|. .||+++ .+++| .||.+|||+||+|+
T Consensus 162 f~~~E~VaLsGAHTiG~a~~---------------~Dps~~-------------------g~p~D-~TP~~FDn~Yf~~l 206 (328)
T cd00692 162 FSPDELVALLAAHSVAAQDF---------------VDPSIA-------------------GTPFD-STPGVFDTQFFIET 206 (328)
T ss_pred CCHHHHhhhcccccccccCC---------------CCCCCC-------------------CCCCC-CCcchhcHHHHHHH
Confidence 99999999999999999982 366654 14688 69999999999998
Q ss_pred h-hCcc-------------------cccchhhhhcCCCchhHHHHHHHhhhcHHHHHHHHHHHHHHhhcCCCCCCCCCcc
Q 019976 264 Q-NNQG-------------------LLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNISPLTGSNGEI 323 (333)
Q Consensus 264 ~-~~~g-------------------lL~SD~~L~~d~~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tg~~Gei 323 (333)
+ ++++ +|+||++|+.| + +|+.+|++||+||++|+++|++||+||++|||. ...
T Consensus 207 l~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D--~-~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~----~~~ 279 (328)
T cd00692 207 LLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARD--P-RTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD----NIS 279 (328)
T ss_pred HHcCCCCCCccccccccccCccccccccchHHHhcC--C-cHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC----cch
Confidence 7 5555 49999999999 9 999999999999999999999999999999986 337
Q ss_pred ccccccccC
Q 019976 324 RADCKKVNG 332 (333)
Q Consensus 324 R~~C~~~n~ 332 (333)
+.+|+.|+.
T Consensus 280 l~dcs~v~p 288 (328)
T cd00692 280 LTDCSDVIP 288 (328)
T ss_pred hccCcccCC
Confidence 779999883
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=4.4e-63 Score=460.84 Aligned_cols=220 Identities=25% Similarity=0.487 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHhCccchhhhHHhhhccccc-------cCCCcceeecCCCCCCCcccCCCCCCCchhhHHHHHHHHHHh
Q 019976 42 TIVRNALQQAMQSDIRIGASLIRLHFHDCFV-------NGCDGSVLLDRGGNITQSEKDGGPNTNSARGFGVVDNIKTAV 114 (333)
Q Consensus 42 ~iV~~~v~~~~~~~~~~aa~llRL~FHDcfv-------~GcDgSiLl~~~~~~~~~E~~~~~N~~~~~g~~~I~~iK~~l 114 (333)
+-+++.+.+.+ .+...+|.+|||+||||.+ +||||||.+ ..|+++++|.++..++++|++||+++
T Consensus 18 ~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf-------~~E~~~~~N~gL~~~~~~i~~iK~~~ 89 (251)
T PLN02879 18 QRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRH-------PQELAHDANNGLDIAVRLLDPIKELF 89 (251)
T ss_pred HHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecC-------hhhccCCCcCChHHHHHHHHHHHHHc
Confidence 44577777766 4579999999999999974 799999974 36999999997666999999999988
Q ss_pred hhcCCCCCchhhHHHhhhhhhhhhcCCCceeEecCCCCCCCCCcCCCCCCCCCCCCChHHHHHHHHHCCCChhhhhhccc
Q 019976 115 ENSCPGVVSCADILALAAESSVSLAGGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSG 194 (333)
Q Consensus 115 e~~cp~~VScADilalAardaV~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Glt~~dlVaLsG 194 (333)
++|||||||+||||+||+.+|||.|+|++||+|+.++.+ +++||.|+.++++|++.|+++||+++|||||+|
T Consensus 90 -----~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~---~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsG 161 (251)
T PLN02879 90 -----PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPP---EGRLPQATKGVDHLRDVFGRMGLNDKDIVALSG 161 (251)
T ss_pred -----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeec
Confidence 489999999999999999999999999999999998854 468999999999999999999999999999999
Q ss_pred ccccccccccccccccccCCCCCCCCCCCchHHHHHHhhcCCCCCCCCCcccCCCCCCCCcChHHHHHhhhC--ccc--c
Q 019976 195 AHTFGRAQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNN--QGL--L 270 (333)
Q Consensus 195 aHTiG~~hc~~f~~Rly~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~--~gl--L 270 (333)
|||||++||. | ++|.|. +| .||.+|||+||++|+.+ +|+ |
T Consensus 162 aHTiG~ah~~----r-~g~~g~------------------------------~d-~tp~~FDN~Yy~~ll~~~~~gll~L 205 (251)
T PLN02879 162 GHTLGRCHKE----R-SGFEGA------------------------------WT-PNPLIFDNSYFKEILSGEKEGLLQL 205 (251)
T ss_pred cccccccccc----c-ccCCCC------------------------------CC-CCccceeHHHHHHHHcCCcCCCccc
Confidence 9999999995 3 344321 34 68999999999999999 888 6
Q ss_pred cchhhhhcCCCchhHHHHHHHhhhcHHHHHHHHHHHHHHhhcCCCC
Q 019976 271 QSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNISPL 316 (333)
Q Consensus 271 ~SD~~L~~d~~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~ 316 (333)
+||++|+.| + +|+++|++||.||++|+++|++||+||++||+.
T Consensus 206 ~SD~aL~~D--~-~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 206 PTDKALLDD--P-LFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred hhhHHHhcC--C-cHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 799999999 9 999999999999999999999999999999974
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=1.3e-59 Score=440.32 Aligned_cols=224 Identities=34% Similarity=0.519 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHhCccchhhhHHhhhcccccc--------CCCcceeecCCCCCCCcccCCCCCCCchhhHHHHHHHHHHh
Q 019976 43 IVRNALQQAMQSDIRIGASLIRLHFHDCFVN--------GCDGSVLLDRGGNITQSEKDGGPNTNSARGFGVVDNIKTAV 114 (333)
Q Consensus 43 iV~~~v~~~~~~~~~~aa~llRL~FHDcfv~--------GcDgSiLl~~~~~~~~~E~~~~~N~~~~~g~~~I~~iK~~l 114 (333)
.|++.|++.+.+++++++++|||+||||+++ ||||||+++ +|+++++|.++.+++++|+.||.++
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~-------~e~~~~~N~~l~~~~~~l~~ik~~~ 74 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE-------PELDRPENGGLDKALRALEPIKSAY 74 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc-------ccccCcccccHHHHHHHHHHHHHHc
Confidence 5889999999999999999999999999997 999999986 3999999997789999999999999
Q ss_pred hhcCCCCCchhhHHHhhhhhhhhhc--CCCceeEecCCCCCCCCC--cCCCCCCCCCCCCChHHHHHHHHHCCCChhhhh
Q 019976 115 ENSCPGVVSCADILALAAESSVSLA--GGPSWNVLLGRRDGLRAN--QSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLV 190 (333)
Q Consensus 115 e~~cp~~VScADilalAardaV~~~--GGP~~~v~~GRrD~~~s~--~~~~~~~lP~p~~~~~~l~~~F~~~Glt~~dlV 190 (333)
|. |++|||||||++|+++||+.+ |||.|+|++||+|+..+. ...+..++|.|..+++++++.|+++||+++|||
T Consensus 75 ~~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~V 152 (255)
T cd00314 75 DG--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELV 152 (255)
T ss_pred CC--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHH
Confidence 98 899999999999999999999 999999999999999764 333456788889999999999999999999999
Q ss_pred hcc-ccccc-ccccccccccccccCCCCCCCCCCCchHHHHHHhhcCCCCCCCCCcccCCCCCCCCcChHHHHHhhhCc-
Q 019976 191 ALS-GAHTF-GRAQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNNQ- 267 (333)
Q Consensus 191 aLs-GaHTi-G~~hc~~f~~Rly~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~~- 267 (333)
||+ ||||| |++||..+..|+ |+ +|..||.+|||+||++|+.++
T Consensus 153 AL~~GaHti~G~~~~~~~~~~~------------------------~~----------~~~~tp~~fDN~yy~~l~~~~~ 198 (255)
T cd00314 153 ALSAGAHTLGGKNHGDLLNYEG------------------------SG----------LWTSTPFTFDNAYFKNLLDMNW 198 (255)
T ss_pred hhccCCeeccCcccCCCCCccc------------------------CC----------CCCCCCCccchHHHHHHhcCCc
Confidence 999 99999 999999876664 11 344899999999999999998
Q ss_pred ---------------ccccchhhhhcCCCchhHHHHHHHhhhcHHHHHHHHHHHHHHhhc
Q 019976 268 ---------------GLLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGN 312 (333)
Q Consensus 268 ---------------glL~SD~~L~~d~~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 312 (333)
++|+||++|+.| + +|+.+|++||.|+++|+++|++||+||++
T Consensus 199 ~~~~~~~~~~~~~~~~~l~sD~~L~~d--~-~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 199 EWRVGSPDPDGVKGPGLLPSDYALLSD--S-ETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred ccccCCccCCCcccCCCchhhHHHhcC--H-hHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 899999999999 9 99999999999999999999999999984
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=3.4e-55 Score=427.56 Aligned_cols=259 Identities=21% Similarity=0.336 Sum_probs=227.4
Q ss_pred HHHHHHHHHHHHhC--------ccchhhhHHhhhccccc-------cCCC-cceeecCCCCCCCcccCCCCCCCchhhHH
Q 019976 42 TIVRNALQQAMQSD--------IRIGASLIRLHFHDCFV-------NGCD-GSVLLDRGGNITQSEKDGGPNTNSARGFG 105 (333)
Q Consensus 42 ~iV~~~v~~~~~~~--------~~~aa~llRL~FHDcfv-------~GcD-gSiLl~~~~~~~~~E~~~~~N~~~~~g~~ 105 (333)
+.|++.|++.+... ...+|.+|||+||++.+ +|++ |+|-+ .+|++++.|.++.++..
T Consensus 45 ~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf-------~pe~~~~~N~gL~~a~~ 117 (409)
T cd00649 45 EALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRF-------APLNSWPDNVNLDKARR 117 (409)
T ss_pred HHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCcccc-------ccccCcHhhhhHHHHHH
Confidence 68899999998764 37999999999999986 6886 77754 57999999998889999
Q ss_pred HHHHHHHHhhhcCCCCCchhhHHHhhhhhhhhhcCCCceeEecCCCCCCCCCcC--------------------------
Q 019976 106 VVDNIKTAVENSCPGVVSCADILALAAESSVSLAGGPSWNVLLGRRDGLRANQS-------------------------- 159 (333)
Q Consensus 106 ~I~~iK~~le~~cp~~VScADilalAardaV~~~GGP~~~v~~GRrD~~~s~~~-------------------------- 159 (333)
+++.||+++. ..||+||+|+||+..|||.+|||.|++.+||.|...+...
T Consensus 118 ~L~pik~k~~----~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~ 193 (409)
T cd00649 118 LLWPIKQKYG----NKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLA 193 (409)
T ss_pred HHHHHHHHcC----CCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchh
Confidence 9999999873 4799999999999999999999999999999999654320
Q ss_pred ---------CCCC--CCCCCCCChHHHHHHHHHCCCChhhhhhc-ccccccccccccccccccccCCCCCCCCCCCchHH
Q 019976 160 ---------GANS--SIPAPIDSLSNLTSKFSAVGLDTTDLVAL-SGAHTFGRAQCRVFSGRLYNFNGTGNPDPTVNGTY 227 (333)
Q Consensus 160 ---------~~~~--~lP~p~~~~~~l~~~F~~~Glt~~dlVaL-sGaHTiG~~hc~~f~~Rly~f~g~~~~dp~~d~~~ 227 (333)
.+++ .||+|..++.+|++.|++||||++||||| +||||||++||..|.+||. +||.+++.|
T Consensus 194 a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg-------~dP~~~~~~ 266 (409)
T cd00649 194 AVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVG-------PEPEAAPIE 266 (409)
T ss_pred hhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCC-------CCCCcCHHH
Confidence 0123 69999999999999999999999999999 5999999999999999982 599999999
Q ss_pred HHHHh--hcCCCCCC-CCCcccCC---CCCCCCcChHHHHHhhh------------------------------------
Q 019976 228 LTTLR--QICPQNGN-GSALANLD---PTTADTFDNNYYTNLQN------------------------------------ 265 (333)
Q Consensus 228 ~~~L~--~~Cp~~~~-~~~~~~lD---~~tp~~FDn~Yy~~l~~------------------------------------ 265 (333)
+..|+ ..||...+ +..+..+| ..||.+|||+||++|+.
T Consensus 267 ~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~ 346 (409)
T cd00649 267 QQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKH 346 (409)
T ss_pred HHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCcccccccc
Confidence 99995 89997433 23355788 47999999999999998
Q ss_pred CcccccchhhhhcCCCchhHHHHHHHhhhcHHHHHHHHHHHHHHh--hcCCCCCCCCC
Q 019976 266 NQGLLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINM--GNISPLTGSNG 321 (333)
Q Consensus 266 ~~glL~SD~~L~~d~~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km--~~lgv~tg~~G 321 (333)
+.|||+||++|+.| + +|+++|++||+|+++||++|++||+|| +.+|+++--.|
T Consensus 347 ~~gmL~SD~aL~~D--p-~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 347 APMMLTTDLALRFD--P-EYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred CcccchhhHhhhcC--c-cHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 56899999999999 9 999999999999999999999999999 68999886555
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=9.7e-53 Score=433.50 Aligned_cols=255 Identities=22% Similarity=0.315 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHHhC--------ccchhhhHHhhhccccc-------cCC-CcceeecCCCCCCCcccCCCCCCCchhhHH
Q 019976 42 TIVRNALQQAMQSD--------IRIGASLIRLHFHDCFV-------NGC-DGSVLLDRGGNITQSEKDGGPNTNSARGFG 105 (333)
Q Consensus 42 ~iV~~~v~~~~~~~--------~~~aa~llRL~FHDcfv-------~Gc-DgSiLl~~~~~~~~~E~~~~~N~~~~~g~~ 105 (333)
+.|++.|++.+... ...+|-+|||+||++.+ +|| .|+|-+ .+|++++.|.++.++..
T Consensus 55 ~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf-------~P~~sw~~N~~Ldka~~ 127 (716)
T TIGR00198 55 AAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRF-------APLNSWPDNVNLDKARR 127 (716)
T ss_pred HHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceec-------ccccCchhhhhHHHHHH
Confidence 56899999999764 37999999999999986 577 466654 57999999998889999
Q ss_pred HHHHHHHHhhhcCCCCCchhhHHHhhhhhhhhhcCCCceeEecCCCCCCCCC----------------------------
Q 019976 106 VVDNIKTAVENSCPGVVSCADILALAAESSVSLAGGPSWNVLLGRRDGLRAN---------------------------- 157 (333)
Q Consensus 106 ~I~~iK~~le~~cp~~VScADilalAardaV~~~GGP~~~v~~GRrD~~~s~---------------------------- 157 (333)
+++.||+ .||++|||||||+||+++||+.+|||.|+|.+||+|+..+.
T Consensus 128 lL~pIk~----kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~ 203 (716)
T TIGR00198 128 LLWPIKK----KYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAA 203 (716)
T ss_pred HHHHHHH----HCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchh
Confidence 9999987 58899999999999999999999999999999999994321
Q ss_pred ---------cCCCCCCCCCCCCChHHHHHHHHHCCCChhhhhhcc-cccccccccccccccccccCCCCCCCCCCCchHH
Q 019976 158 ---------QSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALS-GAHTFGRAQCRVFSGRLYNFNGTGNPDPTVNGTY 227 (333)
Q Consensus 158 ---------~~~~~~~lP~p~~~~~~l~~~F~~~Glt~~dlVaLs-GaHTiG~~hc~~f~~Rly~f~g~~~~dp~~d~~~ 227 (333)
+.. ...+|.|..++++|++.|++||||++|||||+ ||||||++||.+|.+|| ++||++++.|
T Consensus 204 ~~~Gliyvnpeg-~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl-------g~dP~~~~~~ 275 (716)
T TIGR00198 204 TEMGLIYVNPEG-PDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI-------GPDPEGAPIE 275 (716)
T ss_pred hhccccccCccc-ccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC-------CCCCCcCHHH
Confidence 111 12699999999999999999999999999996 99999999999999998 2799999999
Q ss_pred HHHHhhcCCCCC---CCCCcccCC---CCCCCCcChHHHHHhhhC----------------------------------c
Q 019976 228 LTTLRQICPQNG---NGSALANLD---PTTADTFDNNYYTNLQNN----------------------------------Q 267 (333)
Q Consensus 228 ~~~L~~~Cp~~~---~~~~~~~lD---~~tp~~FDn~Yy~~l~~~----------------------------------~ 267 (333)
++.|+..||... .+..++.+| ..||.+|||+||+||+.+ .
T Consensus 276 ~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~ 355 (716)
T TIGR00198 276 EQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNP 355 (716)
T ss_pred HHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeeccccccccccccccccccc
Confidence 999999998532 222356777 579999999999999975 6
Q ss_pred ccccchhhhhcCCCchhHHHHHHHhhhcHHHHHHHHHHHHHHhh--cCCCCCC
Q 019976 268 GLLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMG--NISPLTG 318 (333)
Q Consensus 268 glL~SD~~L~~d~~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~--~lgv~tg 318 (333)
++|+||++|..| + +++++|+.||.|++.|+++|++||+||+ .+|++.-
T Consensus 356 ~mL~SDlaL~~D--p-~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~~ 405 (716)
T TIGR00198 356 IMLDADLALRFD--P-EFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKSR 405 (716)
T ss_pred CccchhHHhccC--c-cHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchhh
Confidence 899999999999 9 9999999999999999999999999999 4565543
No 12
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=1.2e-49 Score=370.56 Aligned_cols=214 Identities=26% Similarity=0.358 Sum_probs=177.6
Q ss_pred HHHHHhCccchhhhHHhhhcccc-------ccCCCcceeecCCCCCCCcccC-CCCCCCchhhHHHHHHHHHHhhhcCCC
Q 019976 49 QQAMQSDIRIGASLIRLHFHDCF-------VNGCDGSVLLDRGGNITQSEKD-GGPNTNSARGFGVVDNIKTAVENSCPG 120 (333)
Q Consensus 49 ~~~~~~~~~~aa~llRL~FHDcf-------v~GcDgSiLl~~~~~~~~~E~~-~~~N~~~~~g~~~I~~iK~~le~~cp~ 120 (333)
..+...+++++|++|||+||||| ++||||||+++. ..+|+. .+.|. .+++|+.|+.+
T Consensus 32 ~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~----~~~En~G~~~n~-~l~~~~~i~~~---------- 96 (264)
T cd08201 32 DCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYEL----DRPENIGSGFNT-TLNFFVNFYSP---------- 96 (264)
T ss_pred ccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecC----CChhhccCchhh-ccccceeeccC----------
Confidence 33445788999999999999999 889999999984 357887 44454 67888877543
Q ss_pred CCchhhHHHhhhhhhhhhcCCCceeEecCCCCCCCCCcCCCCCCCCCCCCChHHHHHHHHHCCCChhhhhhccc-ccccc
Q 019976 121 VVSCADILALAAESSVSLAGGPSWNVLLGRRDGLRANQSGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALSG-AHTFG 199 (333)
Q Consensus 121 ~VScADilalAardaV~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Glt~~dlVaLsG-aHTiG 199 (333)
+||||||||||||+||+.+|||.|+|++||+|++++.+. .||.|+.++++|++.|++|||+++|||+|+| |||||
T Consensus 97 ~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~----glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG 172 (264)
T cd08201 97 RSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA----GVPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLG 172 (264)
T ss_pred ccCHHHHHHHHHHHHHHHcCCCeecccccCCCccccccc----cCCCCccCHHHHHHHHHHcCCChHHHheeecCCeeee
Confidence 699999999999999999999999999999999988764 3999999999999999999999999999995 99999
Q ss_pred cccccccccccccCCCCCCCCCCCchHHHHHHhhcCCCCCCCCCcccCCCCCCCCcChHHHHHhhhCcc----------c
Q 019976 200 RAQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTFDNNYYTNLQNNQG----------L 269 (333)
Q Consensus 200 ~~hc~~f~~Rly~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~~g----------l 269 (333)
++||..|.++.- |. ...+...++| .||.+|||+||.+++.+.. .
T Consensus 173 ~ahc~~f~~~~~---------~g----------------~~~~~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~~~~ 226 (264)
T cd08201 173 GVHSEDFPEIVP---------PG----------------SVPDTVLQFF-DTTIQFDNKVVTEYLSGTTNNPLVVGPNNT 226 (264)
T ss_pred ecccccchhhcC---------Cc----------------cccCCCCCCC-CCccccchHHHHHHhcCCCCCceeecCCCC
Confidence 999998766531 10 0001245688 7999999999999998753 3
Q ss_pred ccchhhhhcCCCchhHHHHHHHhhhcHHHHHHHHHHHHHHhhc
Q 019976 270 LQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGN 312 (333)
Q Consensus 270 L~SD~~L~~d~~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 312 (333)
++||..++..++. . .++..| +++.|.+.++..+.||.+
T Consensus 227 ~~sd~r~f~~d~n-~---t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 227 TNSDLRIFSSDGN-V---TMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred ccchhhheecCcc-H---HHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 6899999976333 3 467777 799999999999999974
No 13
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=9e-49 Score=402.12 Aligned_cols=266 Identities=21% Similarity=0.330 Sum_probs=225.3
Q ss_pred hccCCccH-HHHHHHHHHHHHHhC--------ccchhhhHHhhhccccc-------cCCC-cceeecCCCCCCCcccCCC
Q 019976 33 YATTCPNV-TTIVRNALQQAMQSD--------IRIGASLIRLHFHDCFV-------NGCD-GSVLLDRGGNITQSEKDGG 95 (333)
Q Consensus 33 Y~~sCP~~-e~iV~~~v~~~~~~~--------~~~aa~llRL~FHDcfv-------~GcD-gSiLl~~~~~~~~~E~~~~ 95 (333)
|.+.+-+. .+.|++.|++.+... ...+|-+|||+||++.+ +||+ |+|- +.+|++++
T Consensus 47 y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iR-------f~pe~~w~ 119 (726)
T PRK15061 47 YAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQR-------FAPLNSWP 119 (726)
T ss_pred HHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCccc-------Ccccccch
Confidence 34444333 357999999998764 47999999999999996 5785 6664 45799999
Q ss_pred CCCCchhhHHHHHHHHHHhhhcCCCCCchhhHHHhhhhhhhhhcCCCceeEecCCCCCCCCCcC----------------
Q 019976 96 PNTNSARGFGVVDNIKTAVENSCPGVVSCADILALAAESSVSLAGGPSWNVLLGRRDGLRANQS---------------- 159 (333)
Q Consensus 96 ~N~~~~~g~~~I~~iK~~le~~cp~~VScADilalAardaV~~~GGP~~~v~~GRrD~~~s~~~---------------- 159 (333)
.|.++.++..++++||+++ |..||.||+|+||+..|||.+|||.|++.+||.|...+...
T Consensus 120 ~N~gL~ka~~~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~ 195 (726)
T PRK15061 120 DNVNLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERY 195 (726)
T ss_pred hhhhHHHHHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCcccccccccccc
Confidence 9998889999999999987 35799999999999999999999999999999998643321
Q ss_pred ----------------------CCCCCCCCCCCChHHHHHHHHHCCCChhhhhhcc-cccccccccccccccccccCCCC
Q 019976 160 ----------------------GANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALS-GAHTFGRAQCRVFSGRLYNFNGT 216 (333)
Q Consensus 160 ----------------------~~~~~lP~p~~~~~~l~~~F~~~Glt~~dlVaLs-GaHTiG~~hc~~f~~Rly~f~g~ 216 (333)
+-...+|+|..++.+|++.|++||||++|||||+ ||||||++||..|.+||
T Consensus 196 ~~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rl------ 269 (726)
T PRK15061 196 SGERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHV------ 269 (726)
T ss_pred ccccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccccc------
Confidence 0012379999999999999999999999999995 99999999999999998
Q ss_pred CCCCCCCchHHHHHHh--hcCCCCCC-CCCcccCC---CCCCCCcChHHHHHhhhC------------------------
Q 019976 217 GNPDPTVNGTYLTTLR--QICPQNGN-GSALANLD---PTTADTFDNNYYTNLQNN------------------------ 266 (333)
Q Consensus 217 ~~~dp~~d~~~~~~L~--~~Cp~~~~-~~~~~~lD---~~tp~~FDn~Yy~~l~~~------------------------ 266 (333)
++||.+++.+++.|. ..||...+ +..+..+| ..||.+|||+||++|+.+
T Consensus 270 -gpdP~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~ 348 (726)
T PRK15061 270 -GPEPEAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDT 348 (726)
T ss_pred -CCCCCcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCcccccc
Confidence 269999999999985 89997433 33355688 579999999999999985
Q ss_pred ------------cccccchhhhhcCCCchhHHHHHHHhhhcHHHHHHHHHHHHHHhh--cCCCCCCC
Q 019976 267 ------------QGLLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMG--NISPLTGS 319 (333)
Q Consensus 267 ------------~glL~SD~~L~~d~~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~--~lgv~tg~ 319 (333)
.+||+||++|..| | +++++|++||.|+++|+++|++||+||. .+|+++--
T Consensus 349 ~pd~~~~~~~~~~~MLtSD~AL~~D--P-~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ry 412 (726)
T PRK15061 349 VPDAHDPSKKHAPTMLTTDLALRFD--P-EYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSRY 412 (726)
T ss_pred CCcccccccccCcccccccHHhhcC--C-cHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhhh
Confidence 5899999999999 9 9999999999999999999999999995 46665543
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=4.2e-38 Score=296.59 Aligned_cols=221 Identities=20% Similarity=0.266 Sum_probs=179.6
Q ss_pred HHHHHHHHhCccchhhhHHhhhccccc-------cCCCcc-eeecCCCCCCCcccCCCCCCC--chhhHHHHHHHHHHhh
Q 019976 46 NALQQAMQSDIRIGASLIRLHFHDCFV-------NGCDGS-VLLDRGGNITQSEKDGGPNTN--SARGFGVVDNIKTAVE 115 (333)
Q Consensus 46 ~~v~~~~~~~~~~aa~llRL~FHDcfv-------~GcDgS-iLl~~~~~~~~~E~~~~~N~~--~~~g~~~I~~iK~~le 115 (333)
+.+++.+....-..+.||||+||++.+ +|++|+ |- +.+|++++.|.+ +.+.+.++++||++..
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariR-------l~pe~~w~~N~~~~L~~~~~~Le~ik~~~~ 89 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIR-------LAPQKDWEVNEPEELAKVLAVLEGIQKEFN 89 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCccccc-------CccccCcCccCcHHHHHHHHHHHHHHHHhc
Confidence 667777777778899999999999986 689998 53 457999999998 7789999999999885
Q ss_pred hc-CCC-CCchhhHHHhhhhhhhhhcCC-----CceeEecCCCCCCCCCcCCC--CCCCCCCC------------CChHH
Q 019976 116 NS-CPG-VVSCADILALAAESSVSLAGG-----PSWNVLLGRRDGLRANQSGA--NSSIPAPI------------DSLSN 174 (333)
Q Consensus 116 ~~-cp~-~VScADilalAardaV~~~GG-----P~~~v~~GRrD~~~s~~~~~--~~~lP~p~------------~~~~~ 174 (333)
.. -++ .||.||+|+||+..|||.+|| |.|++.+||.|...+..... ...+|.+. ...+.
T Consensus 90 ~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~ 169 (297)
T cd08200 90 ESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEM 169 (297)
T ss_pred ccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHH
Confidence 22 122 699999999999999999999 99999999999987543211 11335332 23467
Q ss_pred HHHHHHHCCCChhhhhhccccc-ccccccccccccccccCCCCCCCCCCCchHHHHHHhhcCCCCCCCCCcccCCCCCCC
Q 019976 175 LTSKFSAVGLDTTDLVALSGAH-TFGRAQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTAD 253 (333)
Q Consensus 175 l~~~F~~~Glt~~dlVaLsGaH-TiG~~hc~~f~~Rly~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~ 253 (333)
|++.|.++|||++|||||+||| ++|.+|..+ +.| .++ .+|.
T Consensus 170 Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s-------~~G-------------------------~wT------~~p~ 211 (297)
T cd08200 170 LVDKAQLLTLTAPEMTVLVGGLRVLGANYGGS-------KHG-------------------------VFT------DRPG 211 (297)
T ss_pred HHHHHHhCCCChHHHhheecchhhcccCCCCC-------CCC-------------------------CCc------CCCC
Confidence 9999999999999999999997 699887432 112 122 5899
Q ss_pred CcChHHHHHhhhCc--------------------c-----cccchhhhhcCCCchhHHHHHHHhhhc--HHHHHHHHHHH
Q 019976 254 TFDNNYYTNLQNNQ--------------------G-----LLQSDQELFSTNGPAAIVAIVNNFASN--QTAFFQQFVQS 306 (333)
Q Consensus 254 ~FDn~Yy~~l~~~~--------------------g-----lL~SD~~L~~d~~~~~t~~~V~~yA~d--~~~F~~~Fa~A 306 (333)
+|||.||+||+... | .+.+|..|.+| + +.|++|+.||.| +++||+||++|
T Consensus 212 ~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd--~-~~R~~ve~YA~dd~~~~F~~DF~~A 288 (297)
T cd08200 212 VLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSN--S-ELRAVAEVYASDDAQEKFVKDFVAA 288 (297)
T ss_pred ccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccC--H-HHHHHHHHHhcccchhHHHHHHHHH
Confidence 99999999999521 1 26789999999 9 999999999998 99999999999
Q ss_pred HHHhhcCC
Q 019976 307 MINMGNIS 314 (333)
Q Consensus 307 m~Km~~lg 314 (333)
|.||+++.
T Consensus 289 ~~Klmeld 296 (297)
T cd08200 289 WTKVMNLD 296 (297)
T ss_pred HHHHHhcC
Confidence 99999874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=3.9e-33 Score=288.37 Aligned_cols=221 Identities=21% Similarity=0.327 Sum_probs=176.0
Q ss_pred HHHHHHHHH---HHhCccchhhhHHhhhccccc-------cCCCcc-eeecCCCCCCCcccCCCCC--CCchhhHHHHHH
Q 019976 43 IVRNALQQA---MQSDIRIGASLIRLHFHDCFV-------NGCDGS-VLLDRGGNITQSEKDGGPN--TNSARGFGVVDN 109 (333)
Q Consensus 43 iV~~~v~~~---~~~~~~~aa~llRL~FHDcfv-------~GcDgS-iLl~~~~~~~~~E~~~~~N--~~~~~g~~~I~~ 109 (333)
+|++.|.+. +....-..+.|||++||++.+ +|++|+ |-| .+|++++.| .++.+.+.+++.
T Consensus 429 ~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl-------~pe~~w~~N~p~gL~~vl~~Le~ 501 (716)
T TIGR00198 429 LSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRL-------EPQKNWPVNEPTRLAKVLAVLEK 501 (716)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeec-------chhcCcccCCHHHHHHHHHHHHH
Confidence 345555553 445566789999999999986 699998 544 479999999 778889999999
Q ss_pred HHHHhhhcCCCCCchhhHHHhhhhhhhhhc---CCC--ceeEecCCCCCCCCCcCCCCCCCC-CC--------------C
Q 019976 110 IKTAVENSCPGVVSCADILALAAESSVSLA---GGP--SWNVLLGRRDGLRANQSGANSSIP-AP--------------I 169 (333)
Q Consensus 110 iK~~le~~cp~~VScADilalAardaV~~~---GGP--~~~v~~GRrD~~~s~~~~~~~~lP-~p--------------~ 169 (333)
||++... ..||.||+|+||+..|||.+ ||| .|++.+||.|.+..... ++...| .| .
T Consensus 502 Ik~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td-~~~~~~l~p~adgfRn~~~~~~~~ 577 (716)
T TIGR00198 502 IQAEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTD-AESFTPLEPIADGFRNYLKRDYAV 577 (716)
T ss_pred HHHHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCC-ccccccCCCCCcccchhccccccC
Confidence 9998852 27999999999999999999 998 57889999999876432 222222 11 1
Q ss_pred CChHHHHHHHHHCCCChhhhhhcccc-cccccccccccccccccCCCCCCCCCCCchHHHHHHhhcCCCCCCCCCcccCC
Q 019976 170 DSLSNLTSKFSAVGLDTTDLVALSGA-HTFGRAQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLD 248 (333)
Q Consensus 170 ~~~~~l~~~F~~~Glt~~dlVaLsGa-HTiG~~hc~~f~~Rly~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD 248 (333)
...+.|++.|.++|||++|||||+|| |++|++|..+ +.| .++
T Consensus 578 ~~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s-------~~G-------------------------~~T----- 620 (716)
T TIGR00198 578 TPEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGS-------KHG-------------------------VFT----- 620 (716)
T ss_pred CHHHHHHHHHHhCCCChHHHHheecchhhccccCCCC-------CCC-------------------------CCc-----
Confidence 23566889999999999999999999 5999998532 111 121
Q ss_pred CCCCCCcChHHHHHhhhCc--------------------c---c--ccchhhhhcCCCchhHHHHHHHhhhcH--HHHHH
Q 019976 249 PTTADTFDNNYYTNLQNNQ--------------------G---L--LQSDQELFSTNGPAAIVAIVNNFASNQ--TAFFQ 301 (333)
Q Consensus 249 ~~tp~~FDn~Yy~~l~~~~--------------------g---l--L~SD~~L~~d~~~~~t~~~V~~yA~d~--~~F~~ 301 (333)
.+|.+|||.||+||+... | + ..+|..|.+| + +.|++|+.||.|+ ++|++
T Consensus 621 -~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd--~-~lra~aE~YA~dd~~~~F~~ 696 (716)
T TIGR00198 621 -DRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSN--S-ILRAVAEVYAQDDAREKFVK 696 (716)
T ss_pred -CCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccC--H-HHHHHHHHHhcccccchHHH
Confidence 589999999999999621 1 2 2679999999 9 9999999999997 89999
Q ss_pred HHHHHHHHhhcCCC
Q 019976 302 QFVQSMINMGNISP 315 (333)
Q Consensus 302 ~Fa~Am~Km~~lgv 315 (333)
||++||.|+++++-
T Consensus 697 DF~~Aw~Klm~ldr 710 (716)
T TIGR00198 697 DFVAAWTKVMNLDR 710 (716)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999999874
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1.6e-32 Score=282.53 Aligned_cols=221 Identities=20% Similarity=0.282 Sum_probs=179.4
Q ss_pred HHHHHHHHhCccchhhhHHhhhccccc-------cCCCcc-eeecCCCCCCCcccCCCCCC--CchhhHHHHHHHHHHhh
Q 019976 46 NALQQAMQSDIRIGASLIRLHFHDCFV-------NGCDGS-VLLDRGGNITQSEKDGGPNT--NSARGFGVVDNIKTAVE 115 (333)
Q Consensus 46 ~~v~~~~~~~~~~aa~llRL~FHDcfv-------~GcDgS-iLl~~~~~~~~~E~~~~~N~--~~~~g~~~I~~iK~~le 115 (333)
..+++.+....-..+.|||++||++.+ +|++|+ |-| .+|++++.|. ++.+.+++++.||++..
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl-------~Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~ 514 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRL-------APQKDWEVNEPAQLAKVLAVLEGIQAEFN 514 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceec-------ccccCccccCHHHHHHHHHHHHHHHHHHh
Confidence 566677777777899999999999986 689988 654 4699999998 77789999999999986
Q ss_pred hcCC--CCCchhhHHHhhhhhhhhhc---CC--CceeEecCCCCCCCCCcCCCC---CCCCCCC------------CChH
Q 019976 116 NSCP--GVVSCADILALAAESSVSLA---GG--PSWNVLLGRRDGLRANQSGAN---SSIPAPI------------DSLS 173 (333)
Q Consensus 116 ~~cp--~~VScADilalAardaV~~~---GG--P~~~v~~GRrD~~~s~~~~~~---~~lP~p~------------~~~~ 173 (333)
..-. ..||.||+|+||+..|||.+ || |.|++.+||.|.+..... ++ ..+|... ...+
T Consensus 515 ~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td-~esf~~l~P~Adgfrny~~~~~~~~~e~ 593 (726)
T PRK15061 515 AAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTD-VESFAVLEPKADGFRNYLKKGYSVSPEE 593 (726)
T ss_pred hccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCC-cccccccCCCCccccccccccCCCCHHH
Confidence 4321 26999999999999999999 68 999999999999875432 22 2456432 1347
Q ss_pred HHHHHHHHCCCChhhhhhccccc-ccccccccccccccccCCCCCCCCCCCchHHHHHHhhcCCCCCCCCCcccCCCCCC
Q 019976 174 NLTSKFSAVGLDTTDLVALSGAH-TFGRAQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTA 252 (333)
Q Consensus 174 ~l~~~F~~~Glt~~dlVaLsGaH-TiG~~hc~~f~~Rly~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp 252 (333)
.|++.|.++|||++|||||+||| ++|.+|-.++ .| .++ .+|
T Consensus 594 ~L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~-------~G-------------------------~~T------~~p 635 (726)
T PRK15061 594 LLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK-------HG-------------------------VFT------DRP 635 (726)
T ss_pred HHHHHHHhCCCChHHHhheecchhhcccCCCCCC-------CC-------------------------CCc------CCC
Confidence 79999999999999999999997 7888874321 11 121 589
Q ss_pred CCcChHHHHHhhhCc--------------------c---c--ccchhhhhcCCCchhHHHHHHHhhhc--HHHHHHHHHH
Q 019976 253 DTFDNNYYTNLQNNQ--------------------G---L--LQSDQELFSTNGPAAIVAIVNNFASN--QTAFFQQFVQ 305 (333)
Q Consensus 253 ~~FDn~Yy~~l~~~~--------------------g---l--L~SD~~L~~d~~~~~t~~~V~~yA~d--~~~F~~~Fa~ 305 (333)
.+|||.||+||+... | + +.+|..|.+| + +.|++|+.||.| +++|++||++
T Consensus 636 ~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsd--s-~lRa~aEvYA~dd~~~kF~~DF~~ 712 (726)
T PRK15061 636 GVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSN--S-QLRALAEVYASDDAKEKFVRDFVA 712 (726)
T ss_pred CccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccC--H-HHHHHHHHHhcccchhHHHHHHHH
Confidence 999999999999521 1 1 4789999999 9 999999999999 9999999999
Q ss_pred HHHHhhcCCC
Q 019976 306 SMINMGNISP 315 (333)
Q Consensus 306 Am~Km~~lgv 315 (333)
||.|+++++-
T Consensus 713 Aw~Kvmeldr 722 (726)
T PRK15061 713 AWTKVMNLDR 722 (726)
T ss_pred HHHHHHhCCC
Confidence 9999999874
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4e-28 Score=240.11 Aligned_cols=250 Identities=20% Similarity=0.318 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHhC--------ccchhhhHHhhhcccccc-------CCCcceeecCCCCCCCcccCCCCCCCchhhHHHH
Q 019976 43 IVRNALQQAMQSD--------IRIGASLIRLHFHDCFVN-------GCDGSVLLDRGGNITQSEKDGGPNTNSARGFGVV 107 (333)
Q Consensus 43 iV~~~v~~~~~~~--------~~~aa~llRL~FHDcfv~-------GcDgSiLl~~~~~~~~~E~~~~~N~~~~~g~~~I 107 (333)
.|+..+...+... ...+|-+|||+||-+.++ |..+.- .++.++.++|.|.++.+++.++
T Consensus 71 Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~------qRFaPlnSWPDN~nLDKarRLL 144 (730)
T COG0376 71 AVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQ------QRFAPLNSWPDNANLDKARRLL 144 (730)
T ss_pred HHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCc------eecccccCCCcccchHHHHHHh
Confidence 4556666666543 258999999999999862 332221 1267889999999999999999
Q ss_pred HHHHHHhhhcCCCCCchhhHHHhhhhhhhhhcCCCceeEecCCCCCCCCCc-----------------------------
Q 019976 108 DNIKTAVENSCPGVVSCADILALAAESSVSLAGGPSWNVLLGRRDGLRANQ----------------------------- 158 (333)
Q Consensus 108 ~~iK~~le~~cp~~VScADilalAardaV~~~GGP~~~v~~GRrD~~~s~~----------------------------- 158 (333)
..||+++ +..||.||+++|++..|++.+|++.+.+..||.|--.+..
T Consensus 145 WPIKkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~Plaav 220 (730)
T COG0376 145 WPIKKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAV 220 (730)
T ss_pred hhHhHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhh
Confidence 9999987 4589999999999999999999999999999999765543
Q ss_pred ---------CCCCCCCCCCCCChHHHHHHHHHCCCChhhhhhcc-cccccccccccccccccccCCCCCCCCCCCchHHH
Q 019976 159 ---------SGANSSIPAPIDSLSNLTSKFSAVGLDTTDLVALS-GAHTFGRAQCRVFSGRLYNFNGTGNPDPTVNGTYL 228 (333)
Q Consensus 159 ---------~~~~~~lP~p~~~~~~l~~~F~~~Glt~~dlVaLs-GaHTiG~~hc~~f~~Rly~f~g~~~~dp~~d~~~~ 228 (333)
.. .+..|+|-.+..+++..|++|+++++|.|||+ ||||+|++|...-.+-+ +++|.--+--.
T Consensus 221 qMGLIYVNPEG-png~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~v-------g~ePe~a~ie~ 292 (730)
T COG0376 221 QMGLIYVNPEG-PNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNV-------GPEPEAAPIEQ 292 (730)
T ss_pred eeeeEEeCCCC-CCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhc-------CCCccccchhh
Confidence 22 23578999999999999999999999999998 69999999965321111 24453222111
Q ss_pred HHH--hhcCCCCCCCCC-c----ccCCCCCCCCcChHHHHHhhhCc----------------------------------
Q 019976 229 TTL--RQICPQNGNGSA-L----ANLDPTTADTFDNNYYTNLQNNQ---------------------------------- 267 (333)
Q Consensus 229 ~~L--~~~Cp~~~~~~~-~----~~lD~~tp~~FDn~Yy~~l~~~~---------------------------------- 267 (333)
+.| ...|-...+..+ + +.+- .||++|||.||.+|+...
T Consensus 293 qGlGW~~~~g~G~G~dtitsGlE~~Wt-~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~ 371 (730)
T COG0376 293 QGLGWANTYGSGKGPDTITSGLEGAWT-TTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHG 371 (730)
T ss_pred hccccccccCCCcCcccccccccccCC-CCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccC
Confidence 211 233332222211 1 2333 689999999999998631
Q ss_pred -ccccchhhhhcCCCchhHHHHHHHhhhcHHHHHHHHHHHHHHhhcCC
Q 019976 268 -GLLQSDQELFSTNGPAAIVAIVNNFASNQTAFFQQFVQSMINMGNIS 314 (333)
Q Consensus 268 -glL~SD~~L~~d~~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lg 314 (333)
.||++|.+|.-| | ..++|.++|..|++.|.+.|++||.||..-+
T Consensus 372 p~MlttDlaLr~D--P-~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 372 PMMLTTDLALRFD--P-EYEKISRRFLEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred ceeeccchhhhcC--h-HHHHHHHHHHhCHHHHHHHHHHHHHHHhhcc
Confidence 489999999999 9 9999999999999999999999999998754
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.37 E-value=6.1e-12 Score=125.93 Aligned_cols=217 Identities=22% Similarity=0.319 Sum_probs=153.0
Q ss_pred HHHHHHHHhCccchhhhHHhhhccccc-------cCCCcceeecCCCCCCCcccCCCCCCC--chhhHHHHHHHHHHhhh
Q 019976 46 NALQQAMQSDIRIGASLIRLHFHDCFV-------NGCDGSVLLDRGGNITQSEKDGGPNTN--SARGFGVVDNIKTAVEN 116 (333)
Q Consensus 46 ~~v~~~~~~~~~~aa~llRL~FHDcfv-------~GcDgSiLl~~~~~~~~~E~~~~~N~~--~~~g~~~I~~iK~~le~ 116 (333)
..++..+....-....|+-.+|-.+-+ +|.+|.-+- -.+.|+++.|.. +.+-+.+++.|.+...+
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRir------LaPqkdWevN~P~~l~kvl~~le~iq~~fnk 525 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIR------LAPQKDWEVNQPAELAKVLAVLEKIQKEFNK 525 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEe------ecccccCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 455666666666788889999887764 466555331 235788888852 34678899999988873
Q ss_pred cCCCCCchhhHHHhhhhhhhhhc---CCCceeE--ecCCCCCCCCCcCCCCCC--C-CC------------CCCChHHHH
Q 019976 117 SCPGVVSCADILALAAESSVSLA---GGPSWNV--LLGRRDGLRANQSGANSS--I-PA------------PIDSLSNLT 176 (333)
Q Consensus 117 ~cp~~VScADilalAardaV~~~---GGP~~~v--~~GRrD~~~s~~~~~~~~--l-P~------------p~~~~~~l~ 176 (333)
.||.||+|+|++..+||.+ +|-.+.| .+||.|+...... ++.. | |- ....-.-|+
T Consensus 526 ----kvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtD-v~sf~~LeP~aDGfRNy~~~~~~~~pe~~Lv 600 (730)
T COG0376 526 ----KVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTD-VESFAVLEPIADGFRNYVKKDYVLTPEELLV 600 (730)
T ss_pred ----ccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcc-hhhhhcccccchhhhhhccCCCcCCHHHHHH
Confidence 6999999999999999985 7776655 5899999765432 1110 1 11 111234477
Q ss_pred HHHHHCCCChhhhhhccccc-ccccccccccccccccCCCCCCCCCCCchHHHHHHhhcCCCCCCCCCcccCCCCCCCCc
Q 019976 177 SKFSAVGLDTTDLVALSGAH-TFGRAQCRVFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNGNGSALANLDPTTADTF 255 (333)
Q Consensus 177 ~~F~~~Glt~~dlVaLsGaH-TiG~~hc~~f~~Rly~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~F 255 (333)
+.-+-.+||..||++|+||- .+|. ||.|+ ...|.- ..|.++
T Consensus 601 DkAqlL~LtapemtVLiGGlRvLg~-----------n~g~s-------------------------~~GVfT--~~pg~L 642 (730)
T COG0376 601 DKAQLLTLTAPEMTVLIGGLRVLGA-----------NYGGS-------------------------KHGVFT--DRPGVL 642 (730)
T ss_pred HHHHHhccCCccceEEEcceEeecc-----------CCCCC-------------------------ccceec--cCcccc
Confidence 88888999999999999875 3443 22221 122333 368888
Q ss_pred ChHHHHHhhhCc--------------------cc-----ccchhhhhcCCCchhHHHHHHHhhhc--HHHHHHHHHHHHH
Q 019976 256 DNNYYTNLQNNQ--------------------GL-----LQSDQELFSTNGPAAIVAIVNNFASN--QTAFFQQFVQSMI 308 (333)
Q Consensus 256 Dn~Yy~~l~~~~--------------------gl-----L~SD~~L~~d~~~~~t~~~V~~yA~d--~~~F~~~Fa~Am~ 308 (333)
.|.||.||+... |- -..|..+-++ + ..|.+.+.||.| ++.|.+||+.||.
T Consensus 643 tndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsn--s-~LRA~aEVYa~dda~ekFv~DFvaaw~ 719 (730)
T COG0376 643 TNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSN--S-ELRALAEVYASDDAKEKFVKDFVAAWT 719 (730)
T ss_pred cchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCc--H-HHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 899999998531 21 2457777777 8 999999999975 7999999999999
Q ss_pred HhhcCC
Q 019976 309 NMGNIS 314 (333)
Q Consensus 309 Km~~lg 314 (333)
|..++.
T Consensus 720 kVMn~D 725 (730)
T COG0376 720 KVMNLD 725 (730)
T ss_pred HHhccc
Confidence 999875
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=75.94 E-value=21 Score=35.27 Aligned_cols=130 Identities=15% Similarity=0.196 Sum_probs=66.4
Q ss_pred cCCCceeEecCCCCCCCCCcCCCCCCCCCC---CCChHHHHHHHHHCCCC----------hhhhhhcccccccccccccc
Q 019976 139 AGGPSWNVLLGRRDGLRANQSGANSSIPAP---IDSLSNLTSKFSAVGLD----------TTDLVALSGAHTFGRAQCRV 205 (333)
Q Consensus 139 ~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p---~~~~~~l~~~F~~~Glt----------~~dlVaLsGaHTiG~~hc~~ 205 (333)
+|-..+..+.||.+-..-.+.......+.. -..+.++.+.|++.|+. .+|+..|.|+|.+
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~laG~D~l------- 252 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILELAGCDKL------- 252 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHHHCCCEE-------
Confidence 477889999999855322221111111211 23567778888888875 4555666666543
Q ss_pred cccccccCCCCCCCCCCCchHHHHHHhhcC-CCCC---CCCCcccCCCCCCCCcChHHHHHhhhCcccccchhhhhcCCC
Q 019976 206 FSGRLYNFNGTGNPDPTVNGTYLTTLRQIC-PQNG---NGSALANLDPTTADTFDNNYYTNLQNNQGLLQSDQELFSTNG 281 (333)
Q Consensus 206 f~~Rly~f~g~~~~dp~~d~~~~~~L~~~C-p~~~---~~~~~~~lD~~tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~ 281 (333)
+++|...++|...- ..-. .+......+ ..+..+|-..|+...+..++ ..
T Consensus 253 ----------------Ti~p~ll~~L~~~~~~~~~~~l~~~~~~~~~-~~~~~~~e~~fr~~~~~d~m-------a~--- 305 (333)
T PTZ00411 253 ----------------TISPKLLEELANTEDGPVERKLDPEKLTEDT-EKLPELTEKEFRWELNEDAM-------AT--- 305 (333)
T ss_pred ----------------eCCHHHHHHHHhCCCcccCcccCcccccccc-cccCCCCHHHHHHHhCCCcc-------hH---
Confidence 34455555554321 1000 000000011 22356688888765443332 11
Q ss_pred chhHHHHHHHhhhcHHHHHHHH
Q 019976 282 PAAIVAIVNNFASNQTAFFQQF 303 (333)
Q Consensus 282 ~~~t~~~V~~yA~d~~~F~~~F 303 (333)
. ....-++.|+.|+....+-.
T Consensus 306 e-kl~~gir~F~~d~~~Le~~i 326 (333)
T PTZ00411 306 E-KLAEGIRNFAKDLEKLENVI 326 (333)
T ss_pred H-HHHHHHHHHHHHHHHHHHHH
Confidence 1 44455677887776654433
No 20
>PRK12346 transaldolase A; Provisional
Probab=62.76 E-value=71 Score=31.35 Aligned_cols=76 Identities=16% Similarity=0.207 Sum_probs=42.5
Q ss_pred CCchhhHHHhhhhhhhh--hcCCCceeEecCCCCCCCCCcCCCCCCCCC----CCCChHHHHHHHHHCCCCh--------
Q 019976 121 VVSCADILALAAESSVS--LAGGPSWNVLLGRRDGLRANQSGANSSIPA----PIDSLSNLTSKFSAVGLDT-------- 186 (333)
Q Consensus 121 ~VScADilalAardaV~--~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~----p~~~~~~l~~~F~~~Glt~-------- 186 (333)
.|+|-=.+.|....++. .+|-..+..+.||.|-........ ..++. +-..+.++.+.|++.|+..
T Consensus 149 GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~-~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~ASfR 227 (316)
T PRK12346 149 GINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPM-DPYVVEEDPGVKSVRNIYDYYKQHRYETIVMGASFR 227 (316)
T ss_pred CCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhcccc-ccccccCCChHHHHHHHHHHHHHcCCCcEEEecccC
Confidence 34444444444444433 358889999999998632221110 11211 2235777888888888753
Q ss_pred --hhhhhcccccc
Q 019976 187 --TDLVALSGAHT 197 (333)
Q Consensus 187 --~dlVaLsGaHT 197 (333)
+|+.+|.|+|.
T Consensus 228 n~~qi~alaG~d~ 240 (316)
T PRK12346 228 RTEQILALAGCDR 240 (316)
T ss_pred CHHHHHHHhCCCE
Confidence 45555556553
No 21
>PRK05269 transaldolase B; Provisional
Probab=58.57 E-value=85 Score=30.79 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=29.6
Q ss_pred cCCCceeEecCCCCCCCCCcCCCCCC---CCCCCCChHHHHHHHHHCCCChh
Q 019976 139 AGGPSWNVLLGRRDGLRANQSGANSS---IPAPIDSLSNLTSKFSAVGLDTT 187 (333)
Q Consensus 139 ~GGP~~~v~~GRrD~~~s~~~~~~~~---lP~p~~~~~~l~~~F~~~Glt~~ 187 (333)
+|-..+..+.||.|-..-........ --++-..+.++.+.|++.|+..+
T Consensus 170 AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~ 221 (318)
T PRK05269 170 AGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTV 221 (318)
T ss_pred cCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCce
Confidence 47788999999997532211000000 11133457788889999998765
No 22
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=58.55 E-value=87 Score=30.73 Aligned_cols=129 Identities=16% Similarity=0.246 Sum_probs=66.4
Q ss_pred hcCCCceeEecCCCCCCCCCcCCCCC---CCCCCCCChHHHHHHHHHCCCChh----------hhhhccccccccccccc
Q 019976 138 LAGGPSWNVLLGRRDGLRANQSGANS---SIPAPIDSLSNLTSKFSAVGLDTT----------DLVALSGAHTFGRAQCR 204 (333)
Q Consensus 138 ~~GGP~~~v~~GRrD~~~s~~~~~~~---~lP~p~~~~~~l~~~F~~~Glt~~----------dlVaLsGaHTiG~~hc~ 204 (333)
.+|-..+..+.||.|--.-....... ..-++-..+.++.+.|++.|+..+ |+.+|.|+|.+
T Consensus 167 ~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qv~~laG~d~~------ 240 (317)
T TIGR00874 167 EAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASFRNKEEILALAGCDRL------ 240 (317)
T ss_pred HcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEEEeeccCCHHHHHHHHCCCeE------
Confidence 35888999999998652111110000 011233467778889989888643 34444444422
Q ss_pred ccccccccCCCCCCCCCCCchHHHHHHhhcCCCCC---CCCCcccCCCCCCCCcChHHHHHhhhCcccccchhhhhcCCC
Q 019976 205 VFSGRLYNFNGTGNPDPTVNGTYLTTLRQICPQNG---NGSALANLDPTTADTFDNNYYTNLQNNQGLLQSDQELFSTNG 281 (333)
Q Consensus 205 ~f~~Rly~f~g~~~~dp~~d~~~~~~L~~~Cp~~~---~~~~~~~lD~~tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~ 281 (333)
+++|...++|...-..-. ........+ ..|..+|...|+..+...+| ..+
T Consensus 241 -----------------Ti~p~ll~~L~~~~~~~~~~l~~~~~~~~~-~~~~~~~e~~fr~~~~~d~m-------a~e-- 293 (317)
T TIGR00874 241 -----------------TISPALLDELKESTGPVERKLDPESAKKVD-KQPIILDESEFRFLHNEDAM-------ATE-- 293 (317)
T ss_pred -----------------eCCHHHHHHHHhCCCCcCccCCcccccccc-ccCCCCCHHHHHHHhCCCcc-------hHH--
Confidence 455666666654211100 000001111 23456788888765544432 121
Q ss_pred chhHHHHHHHhhhcHHHHHH
Q 019976 282 PAAIVAIVNNFASNQTAFFQ 301 (333)
Q Consensus 282 ~~~t~~~V~~yA~d~~~F~~ 301 (333)
....-++.|+.|+....+
T Consensus 294 --kl~~gir~F~~d~~~Le~ 311 (317)
T TIGR00874 294 --KLAEGIRKFAADQEKLEK 311 (317)
T ss_pred --HHHHHHHHHHHHHHHHHH
Confidence 455557778877765543
No 23
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=55.90 E-value=1.7e+02 Score=29.51 Aligned_cols=64 Identities=19% Similarity=0.322 Sum_probs=35.2
Q ss_pred CchhhHHHhhhhhhhh--hcCCCceeEecCCCCCCCCCcCCCCCCCCCCC----CChHHHHHHHHHCCCCh
Q 019976 122 VSCADILALAAESSVS--LAGGPSWNVLLGRRDGLRANQSGANSSIPAPI----DSLSNLTSKFSAVGLDT 186 (333)
Q Consensus 122 VScADilalAardaV~--~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~----~~~~~l~~~F~~~Glt~ 186 (333)
|.|-=.+.+....|+. .+|-..+..+.||.|--.-..... ..+|.+. ..+.++.+.|++.|+..
T Consensus 155 I~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~-~~~~~~~dpGv~~v~~i~~~~~~~~~~T 224 (391)
T PRK12309 155 IHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGR-DSYPGAEDPGVQSVTQIYNYYKKFGYKT 224 (391)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCC-CccccccchHHHHHHHHHHHHHhcCCCc
Confidence 4443334444443332 348888999999987622211110 1134322 24777888888888754
No 24
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=52.53 E-value=12 Score=29.26 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q 019976 298 AFFQQFVQSMINMGNISPL 316 (333)
Q Consensus 298 ~F~~~Fa~Am~Km~~lgv~ 316 (333)
...++|..||.||+.||..
T Consensus 2 ~m~~~F~~am~KlavLG~d 20 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHD 20 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-
T ss_pred hHHHHHHHHHHHHHHhcCC
Confidence 4578999999999998753
No 25
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=47.40 E-value=99 Score=30.27 Aligned_cols=77 Identities=17% Similarity=0.277 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHhhhcCCCCCchhhHHHhhhhhhhh--hcCCCceeEecCCCCCCCCCcCCCCCCCC----CCCCChHHHH
Q 019976 103 GFGVVDNIKTAVENSCPGVVSCADILALAAESSVS--LAGGPSWNVLLGRRDGLRANQSGANSSIP----APIDSLSNLT 176 (333)
Q Consensus 103 g~~~I~~iK~~le~~cp~~VScADilalAardaV~--~~GGP~~~v~~GRrD~~~s~~~~~~~~lP----~p~~~~~~l~ 176 (333)
|+..+..+++. .|+|-=.+.+....|+. .+|-..+..+.||.|-..-..... ...+ ++-..+.++.
T Consensus 137 Gi~A~~~L~~~-------GI~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~-~~~~~~~d~Gv~~v~~i~ 208 (313)
T cd00957 137 GIQAAKQLEKE-------GIHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGD-KAYTAEEDPGVASVKKIY 208 (313)
T ss_pred HHHHHHHHHHC-------CCceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhcccc-ccCCccCCcHHHHHHHHH
Confidence 55555444321 34444444444443333 247788899999987532111100 0111 1223577788
Q ss_pred HHHHHCCCChh
Q 019976 177 SKFSAVGLDTT 187 (333)
Q Consensus 177 ~~F~~~Glt~~ 187 (333)
+.|++.|+..+
T Consensus 209 ~~~~~~~~~T~ 219 (313)
T cd00957 209 NYYKKFGYKTK 219 (313)
T ss_pred HHHHHcCCCcE
Confidence 88989998654
No 26
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=27.27 E-value=44 Score=28.73 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=26.0
Q ss_pred CChHHHHHHHHHCCCChhhhhh-ccccccccccc
Q 019976 170 DSLSNLTSKFSAVGLDTTDLVA-LSGAHTFGRAQ 202 (333)
Q Consensus 170 ~~~~~l~~~F~~~Glt~~dlVa-LsGaHTiG~~h 202 (333)
+++.+.+-.|++|||++.++=+ |--+|-||+++
T Consensus 31 ddvkeqI~K~akKGltpsqIGviLRDshGi~q~r 64 (151)
T KOG0400|consen 31 DDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVR 64 (151)
T ss_pred HHHHHHHHHHHHcCCChhHceeeeecccCcchhh
Confidence 3566666789999999999754 45899999876
No 27
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=24.89 E-value=71 Score=30.13 Aligned_cols=77 Identities=12% Similarity=0.031 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHhhhcCCCCCchhhHHHhhhhhhhh--hcCCCceeEecCCCCCCCCCcCCCCCCCCCCC--C---ChHH
Q 019976 102 RGFGVVDNIKTAVENSCPGVVSCADILALAAESSVS--LAGGPSWNVLLGRRDGLRANQSGANSSIPAPI--D---SLSN 174 (333)
Q Consensus 102 ~g~~~I~~iK~~le~~cp~~VScADilalAardaV~--~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~--~---~~~~ 174 (333)
.|++.+..+++. .|++-=.+.+....++. .+|...+.++.||.|...-......+ +++. . .+.+
T Consensus 127 ~Gl~A~~~L~~~-------GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~--~d~~~~~gi~~~~~ 197 (252)
T cd00439 127 EGIPAIKDLIAA-------GISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIG--LDLRGKAGVAQVTL 197 (252)
T ss_pred HHHHHHHHHHHC-------CCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccc--cccccCcHHHHHHH
Confidence 366666655432 34433333444443333 34777889999999976553322111 2221 2 3446
Q ss_pred HHHHHHHCCCChh
Q 019976 175 LTSKFSAVGLDTT 187 (333)
Q Consensus 175 l~~~F~~~Glt~~ 187 (333)
+.+.|++.|...+
T Consensus 198 ~~~~~~~~~~~tk 210 (252)
T cd00439 198 AYKLYKQKFKKQR 210 (252)
T ss_pred HHHHHHHhCCCCe
Confidence 6677777777544
Done!