Query 019978
Match_columns 333
No_of_seqs 195 out of 2427
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:03:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019978.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019978hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0240 GpsA Glycerol-3-phosph 100.0 4.4E-49 9.6E-54 375.2 24.3 229 43-329 1-231 (329)
2 PTZ00345 glycerol-3-phosphate 100.0 5.1E-46 1.1E-50 363.1 25.5 248 33-327 1-254 (365)
3 TIGR03376 glycerol3P_DH glycer 100.0 5.4E-44 1.2E-48 346.5 25.2 239 45-330 1-248 (342)
4 KOG2711 Glycerol-3-phosphate d 100.0 1.9E-40 4.2E-45 313.5 23.1 261 25-327 3-268 (372)
5 PRK12439 NAD(P)H-dependent gly 100.0 2.1E-38 4.6E-43 307.7 27.1 232 41-330 5-238 (341)
6 PRK14620 NAD(P)H-dependent gly 100.0 8.9E-34 1.9E-38 273.0 26.0 230 44-331 1-234 (326)
7 PRK14618 NAD(P)H-dependent gly 100.0 7.9E-31 1.7E-35 252.8 25.5 229 41-330 2-232 (328)
8 PRK14619 NAD(P)H-dependent gly 100.0 8.5E-29 1.8E-33 237.1 25.7 204 42-330 3-209 (308)
9 PRK00094 gpsA NAD(P)H-dependen 100.0 1.7E-28 3.8E-33 234.7 26.0 231 43-330 1-233 (325)
10 PF01210 NAD_Gly3P_dh_N: NAD-d 99.9 5.9E-27 1.3E-31 203.8 13.9 153 45-254 1-154 (157)
11 PRK06522 2-dehydropantoate 2-r 99.9 5.8E-21 1.2E-25 180.9 17.2 223 44-331 1-233 (304)
12 PRK12921 2-dehydropantoate 2-r 99.8 3.5E-19 7.5E-24 169.2 17.1 222 44-331 1-236 (305)
13 PRK08229 2-dehydropantoate 2-r 99.8 3.1E-18 6.8E-23 165.5 18.4 223 43-330 2-234 (341)
14 PRK06249 2-dehydropantoate 2-r 99.8 4.3E-18 9.4E-23 163.4 16.8 226 42-331 4-245 (313)
15 PRK05708 2-dehydropantoate 2-r 99.8 6.6E-18 1.4E-22 161.8 14.8 222 43-330 2-231 (305)
16 COG1893 ApbA Ketopantoate redu 99.7 4.1E-17 9E-22 156.7 15.5 224 44-331 1-235 (307)
17 TIGR03026 NDP-sugDHase nucleot 99.7 2.4E-16 5.3E-21 156.7 18.6 218 44-329 1-236 (411)
18 PRK12491 pyrroline-5-carboxyla 99.7 1E-15 2.2E-20 144.7 18.4 164 44-280 3-167 (272)
19 TIGR00745 apbA_panE 2-dehydrop 99.7 3.4E-16 7.4E-21 147.3 14.7 215 53-331 1-226 (293)
20 PRK07634 pyrroline-5-carboxyla 99.7 1.1E-14 2.4E-19 134.4 20.1 161 43-277 4-166 (245)
21 COG0345 ProC Pyrroline-5-carbo 99.7 4.2E-15 9.1E-20 139.6 17.2 185 43-302 1-194 (266)
22 PRK06928 pyrroline-5-carboxyla 99.6 6.1E-15 1.3E-19 139.6 15.8 164 43-279 1-166 (277)
23 PRK07680 late competence prote 99.6 6.1E-14 1.3E-18 132.1 20.0 162 44-280 1-164 (273)
24 PRK07679 pyrroline-5-carboxyla 99.6 1.5E-13 3.2E-18 130.0 20.7 163 43-279 3-168 (279)
25 PTZ00431 pyrroline carboxylate 99.6 9.4E-14 2E-18 130.3 18.4 155 44-279 4-159 (260)
26 PLN02688 pyrroline-5-carboxyla 99.5 4E-13 8.6E-18 125.7 19.1 157 44-275 1-159 (266)
27 PRK11880 pyrroline-5-carboxyla 99.5 1E-12 2.2E-17 123.0 19.6 155 43-274 2-158 (267)
28 TIGR01915 npdG NADPH-dependent 99.5 9.8E-13 2.1E-17 120.2 17.3 179 44-278 1-191 (219)
29 PF03807 F420_oxidored: NADP o 99.5 4.8E-13 1E-17 106.1 9.7 94 45-199 1-96 (96)
30 PRK06035 3-hydroxyacyl-CoA deh 99.4 3.6E-12 7.9E-17 121.1 15.5 201 43-297 3-207 (291)
31 PRK06130 3-hydroxybutyryl-CoA 99.4 6.3E-12 1.4E-16 120.3 17.0 181 42-283 3-188 (311)
32 TIGR00872 gnd_rel 6-phosphoglu 99.4 5.3E-12 1.2E-16 120.7 16.1 183 44-300 1-189 (298)
33 COG1004 Ugd Predicted UDP-gluc 99.4 4.8E-12 1E-16 123.5 15.7 193 44-289 1-211 (414)
34 PF03446 NAD_binding_2: NAD bi 99.4 1.1E-12 2.4E-17 114.6 9.3 152 43-272 1-158 (163)
35 PRK11064 wecC UDP-N-acetyl-D-m 99.4 1.2E-11 2.6E-16 123.5 18.0 192 43-289 3-217 (415)
36 PRK15057 UDP-glucose 6-dehydro 99.4 2.5E-11 5.5E-16 120.2 19.0 184 44-289 1-202 (388)
37 PRK12490 6-phosphogluconate de 99.4 1.1E-11 2.4E-16 118.5 15.4 179 44-300 1-190 (299)
38 PRK15461 NADH-dependent gamma- 99.4 1.1E-11 2.3E-16 118.4 15.2 170 44-290 2-177 (296)
39 PRK05808 3-hydroxybutyryl-CoA 99.4 1.6E-11 3.4E-16 116.2 15.4 180 43-280 3-187 (282)
40 PRK08293 3-hydroxybutyryl-CoA 99.4 2.1E-11 4.4E-16 115.8 16.0 182 43-279 3-189 (287)
41 PRK05479 ketol-acid reductoiso 99.4 6E-11 1.3E-15 114.9 19.3 196 44-322 18-235 (330)
42 TIGR01505 tartro_sem_red 2-hyd 99.4 1.5E-11 3.3E-16 116.7 14.9 171 45-291 1-176 (291)
43 PRK09599 6-phosphogluconate de 99.4 1.9E-11 4.1E-16 116.9 15.4 179 44-300 1-191 (301)
44 COG2084 MmsB 3-hydroxyisobutyr 99.3 1.5E-11 3.2E-16 116.7 14.4 183 44-300 1-189 (286)
45 TIGR01692 HIBADH 3-hydroxyisob 99.3 1.2E-11 2.7E-16 117.4 13.9 177 48-301 1-185 (288)
46 PRK11559 garR tartronate semia 99.3 2.6E-11 5.5E-16 115.3 15.7 170 43-289 2-177 (296)
47 PF03721 UDPG_MGDP_dh_N: UDP-g 99.3 9.1E-12 2E-16 111.5 11.4 168 44-262 1-184 (185)
48 PTZ00142 6-phosphogluconate de 99.3 2E-11 4.2E-16 123.7 15.0 186 43-300 1-200 (470)
49 PRK07531 bifunctional 3-hydrox 99.3 8.4E-11 1.8E-15 120.0 19.4 177 43-280 4-186 (495)
50 PRK15182 Vi polysaccharide bio 99.3 6E-11 1.3E-15 118.9 18.0 194 41-289 4-213 (425)
51 TIGR00465 ilvC ketol-acid redu 99.3 6.1E-11 1.3E-15 114.4 17.1 163 44-286 4-189 (314)
52 PF07479 NAD_Gly3P_dh_C: NAD-d 99.3 1.3E-12 2.7E-17 113.2 4.9 55 275-330 1-56 (149)
53 PRK07530 3-hydroxybutyryl-CoA 99.3 7.3E-11 1.6E-15 112.2 17.5 180 43-280 4-188 (292)
54 PLN02353 probable UDP-glucose 99.3 8.2E-11 1.8E-15 119.3 18.2 197 43-290 1-222 (473)
55 PF02737 3HCDH_N: 3-hydroxyacy 99.3 1.3E-11 2.7E-16 110.0 10.3 173 45-276 1-179 (180)
56 PRK09260 3-hydroxybutyryl-CoA 99.3 2.1E-10 4.6E-15 108.9 19.1 177 44-279 2-185 (288)
57 PLN02545 3-hydroxybutyryl-CoA 99.3 2.8E-10 6E-15 108.4 19.2 182 42-280 3-188 (295)
58 PRK06476 pyrroline-5-carboxyla 99.3 2.8E-10 6E-15 106.3 17.5 149 44-273 1-149 (258)
59 PF02558 ApbA: Ketopantoate re 99.3 1.3E-11 2.8E-16 105.6 7.7 116 46-223 1-116 (151)
60 PRK12557 H(2)-dependent methyl 99.2 1.7E-10 3.7E-15 112.6 15.6 189 44-301 1-220 (342)
61 PRK06129 3-hydroxyacyl-CoA deh 99.2 4.7E-10 1E-14 107.6 18.2 181 43-280 2-188 (308)
62 PLN02350 phosphogluconate dehy 99.2 1.1E-10 2.5E-15 118.6 14.5 192 39-300 2-206 (493)
63 PRK08655 prephenate dehydrogen 99.2 4.8E-10 1E-14 112.8 18.1 159 44-278 1-165 (437)
64 PRK07066 3-hydroxybutyryl-CoA 99.2 3E-10 6.5E-15 109.9 15.9 176 42-280 6-189 (321)
65 PRK07417 arogenate dehydrogena 99.2 2.2E-10 4.9E-15 108.4 14.7 170 44-289 1-180 (279)
66 COG2085 Predicted dinucleotide 99.2 2.6E-10 5.6E-15 103.3 13.7 164 43-272 1-176 (211)
67 PRK08507 prephenate dehydrogen 99.2 3.4E-10 7.5E-15 106.8 14.7 169 44-289 1-181 (275)
68 PRK07819 3-hydroxybutyryl-CoA 99.2 1E-09 2.2E-14 104.5 17.0 120 43-203 5-127 (286)
69 PRK15059 tartronate semialdehy 99.2 5E-10 1.1E-14 107.0 14.5 179 44-300 1-187 (292)
70 TIGR00873 gnd 6-phosphoglucona 99.1 4.5E-10 9.8E-15 113.8 13.6 185 45-301 1-198 (467)
71 PRK07502 cyclohexadienyl dehyd 99.1 2.3E-09 5E-14 102.7 17.6 163 39-274 2-177 (307)
72 COG0677 WecC UDP-N-acetyl-D-ma 99.1 1.1E-09 2.3E-14 107.0 15.1 196 44-290 10-221 (436)
73 PRK11730 fadB multifunctional 99.1 1.9E-09 4.1E-14 114.6 16.0 121 42-203 312-434 (715)
74 COG1250 FadB 3-hydroxyacyl-CoA 99.1 2.5E-10 5.4E-15 109.4 8.4 121 42-203 2-124 (307)
75 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.1 6.4E-09 1.4E-13 106.4 18.7 179 42-279 4-188 (503)
76 TIGR00112 proC pyrroline-5-car 99.1 4.1E-09 8.9E-14 98.2 15.6 116 148-280 31-147 (245)
77 PLN02858 fructose-bisphosphate 99.1 3.8E-09 8.3E-14 118.8 17.5 192 34-300 315-515 (1378)
78 TIGR02440 FadJ fatty oxidation 99.1 4.2E-09 9E-14 111.7 16.8 121 42-203 303-426 (699)
79 PLN02256 arogenate dehydrogena 99.0 1.1E-08 2.4E-13 98.4 16.8 157 42-275 35-203 (304)
80 PRK11154 fadJ multifunctional 99.0 6.5E-09 1.4E-13 110.4 16.1 121 42-203 308-431 (708)
81 TIGR02437 FadB fatty oxidation 99.0 7.9E-09 1.7E-13 109.8 16.1 122 41-203 311-434 (714)
82 PRK06545 prephenate dehydrogen 99.0 8.6E-09 1.9E-13 101.1 14.9 160 44-273 1-171 (359)
83 TIGR02441 fa_ox_alpha_mit fatt 99.0 7.8E-09 1.7E-13 110.2 15.2 122 41-203 333-456 (737)
84 PRK08268 3-hydroxy-acyl-CoA de 99.0 3.2E-08 7E-13 101.4 19.2 179 42-279 6-190 (507)
85 PRK14806 bifunctional cyclohex 98.9 2E-08 4.4E-13 106.9 15.4 157 44-274 4-175 (735)
86 PF10727 Rossmann-like: Rossma 98.9 8.8E-10 1.9E-14 93.0 3.9 98 42-202 9-109 (127)
87 PRK11199 tyrA bifunctional cho 98.9 6.1E-08 1.3E-12 95.8 16.4 149 39-278 94-244 (374)
88 KOG0409 Predicted dehydrogenas 98.9 3.6E-08 7.7E-13 93.4 13.5 184 43-302 35-226 (327)
89 PLN02858 fructose-bisphosphate 98.8 8.5E-08 1.8E-12 108.2 17.2 182 44-300 5-195 (1378)
90 COG0287 TyrA Prephenate dehydr 98.8 8.5E-08 1.8E-12 91.2 14.1 166 43-279 3-174 (279)
91 PRK13403 ketol-acid reductoiso 98.7 1.2E-06 2.7E-11 84.5 17.5 196 44-322 17-233 (335)
92 KOG3124 Pyrroline-5-carboxylat 98.7 1.2E-07 2.6E-12 88.0 10.1 164 44-280 1-165 (267)
93 PLN02712 arogenate dehydrogena 98.7 6E-07 1.3E-11 94.9 16.5 156 42-274 368-535 (667)
94 PLN02712 arogenate dehydrogena 98.7 4.2E-07 9.1E-12 96.0 14.7 160 43-279 52-223 (667)
95 PRK08818 prephenate dehydrogen 98.6 1.2E-06 2.5E-11 86.5 16.8 146 42-276 3-155 (370)
96 KOG2304 3-hydroxyacyl-CoA dehy 98.6 8.9E-09 1.9E-13 94.0 0.2 163 42-241 10-178 (298)
97 TIGR01724 hmd_rel H2-forming N 98.6 2.2E-06 4.7E-11 82.6 15.2 95 44-197 1-116 (341)
98 PRK12480 D-lactate dehydrogena 98.5 3.4E-07 7.3E-12 89.1 9.5 92 44-203 147-240 (330)
99 PRK06223 malate dehydrogenase; 98.5 1.7E-06 3.6E-11 82.9 12.9 105 43-201 2-123 (307)
100 PRK02318 mannitol-1-phosphate 98.5 1.4E-07 3E-12 93.4 5.4 226 44-327 1-264 (381)
101 PRK09287 6-phosphogluconate de 98.5 1.9E-06 4.1E-11 87.4 12.8 175 54-300 1-189 (459)
102 PF07991 IlvN: Acetohydroxy ac 98.4 1.7E-06 3.7E-11 75.7 9.7 93 44-202 5-99 (165)
103 TIGR01763 MalateDH_bact malate 98.4 3.7E-06 7.9E-11 81.0 12.0 104 44-201 2-122 (305)
104 cd05297 GH4_alpha_glucosidase_ 98.4 2.1E-06 4.6E-11 86.2 10.1 78 44-170 1-84 (423)
105 PRK08605 D-lactate dehydrogena 98.3 2.5E-06 5.5E-11 83.0 9.6 95 43-203 146-242 (332)
106 PRK08269 3-hydroxybutyryl-CoA 98.3 1.7E-05 3.7E-10 76.7 15.1 174 54-279 1-183 (314)
107 PTZ00082 L-lactate dehydrogena 98.3 7.4E-06 1.6E-10 79.4 11.8 39 42-85 5-43 (321)
108 PTZ00117 malate dehydrogenase; 98.2 1.9E-05 4.1E-10 76.5 12.2 105 43-200 5-125 (319)
109 PRK05225 ketol-acid reductoiso 98.1 1.5E-05 3.3E-10 80.0 10.9 100 44-203 37-136 (487)
110 COG1023 Gnd Predicted 6-phosph 98.1 2.2E-05 4.7E-10 72.7 10.4 147 44-266 1-151 (300)
111 PF01113 DapB_N: Dihydrodipico 98.1 5.3E-05 1.2E-09 63.4 11.7 122 44-236 1-124 (124)
112 PF00056 Ldh_1_N: lactate/mala 98.1 2.6E-05 5.7E-10 66.7 9.4 39 44-86 1-40 (141)
113 cd01339 LDH-like_MDH L-lactate 98.1 3.1E-05 6.6E-10 74.2 10.9 34 46-85 1-35 (300)
114 PRK13304 L-aspartate dehydroge 98.1 2.3E-05 5E-10 73.9 9.7 82 43-182 1-83 (265)
115 cd00650 LDH_MDH_like NAD-depen 98.1 6.3E-05 1.4E-09 70.6 12.6 106 46-201 1-123 (263)
116 PRK13302 putative L-aspartate 98.0 3E-05 6.6E-10 73.4 10.2 83 42-182 5-89 (271)
117 KOG2666 UDP-glucose/GDP-mannos 98.0 0.00013 2.7E-09 70.1 13.7 194 43-289 1-221 (481)
118 PRK15076 alpha-galactosidase; 98.0 4.5E-05 9.7E-10 76.9 11.0 82 43-169 1-84 (431)
119 COG0059 IlvC Ketol-acid reduct 98.0 0.00044 9.6E-09 66.1 16.7 164 44-286 19-204 (338)
120 PLN02602 lactate dehydrogenase 98.0 0.00011 2.4E-09 72.2 12.8 67 15-86 5-76 (350)
121 PRK15469 ghrA bifunctional gly 97.9 6.7E-05 1.4E-09 72.6 10.9 95 43-203 136-232 (312)
122 COG0362 Gnd 6-phosphogluconate 97.9 4.9E-05 1.1E-09 74.8 9.2 154 44-265 4-158 (473)
123 PF01408 GFO_IDH_MocA: Oxidore 97.9 0.00011 2.3E-09 60.0 9.4 94 44-202 1-97 (120)
124 COG4007 Predicted dehydrogenas 97.8 0.0005 1.1E-08 64.4 13.9 169 43-279 1-199 (340)
125 cd05292 LDH_2 A subgroup of L- 97.8 0.00017 3.7E-09 69.5 11.4 39 44-86 1-39 (308)
126 PRK13243 glyoxylate reductase; 97.8 6.6E-05 1.4E-09 73.2 8.6 95 43-203 150-246 (333)
127 PRK07574 formate dehydrogenase 97.8 0.00012 2.6E-09 72.8 10.4 96 44-203 193-290 (385)
128 PRK00066 ldh L-lactate dehydro 97.8 0.00022 4.8E-09 69.0 11.7 42 41-86 4-45 (315)
129 cd05291 HicDH_like L-2-hydroxy 97.8 0.0002 4.4E-09 68.8 11.0 39 44-86 1-39 (306)
130 PLN03139 formate dehydrogenase 97.8 0.00015 3.3E-09 72.0 10.0 97 43-203 199-297 (386)
131 cd01065 NAD_bind_Shikimate_DH 97.7 8.4E-05 1.8E-09 63.4 6.9 40 42-86 18-57 (155)
132 KOG2305 3-hydroxyacyl-CoA dehy 97.7 3.9E-05 8.5E-10 70.6 5.0 119 44-201 4-124 (313)
133 PF02826 2-Hacid_dh_C: D-isome 97.7 0.00011 2.3E-09 65.1 7.6 97 42-203 35-133 (178)
134 PRK06444 prephenate dehydrogen 97.7 7.2E-05 1.6E-09 67.8 6.4 23 44-67 1-24 (197)
135 TIGR02853 spore_dpaA dipicolin 97.7 9.4E-05 2E-09 70.7 7.1 36 43-84 151-186 (287)
136 PRK06436 glycerate dehydrogena 97.7 0.00028 6E-09 68.0 9.8 92 43-203 122-215 (303)
137 PF02153 PDH: Prephenate dehyd 97.6 0.00063 1.4E-08 63.8 11.9 106 155-274 40-156 (258)
138 KOG2380 Prephenate dehydrogena 97.6 0.00055 1.2E-08 66.4 11.2 171 24-270 35-214 (480)
139 PRK06141 ornithine cyclodeamin 97.6 0.00015 3.3E-09 70.0 7.5 94 41-194 123-216 (314)
140 PF01488 Shikimate_DH: Shikima 97.6 0.00012 2.6E-09 62.1 5.9 40 43-87 12-51 (135)
141 cd05213 NAD_bind_Glutamyl_tRNA 97.6 0.00022 4.9E-09 68.7 8.6 97 43-198 178-274 (311)
142 cd05293 LDH_1 A subgroup of L- 97.6 0.0007 1.5E-08 65.5 11.7 39 44-86 4-42 (312)
143 cd05294 LDH-like_MDH_nadp A la 97.6 0.00059 1.3E-08 65.8 11.0 35 44-82 1-36 (309)
144 TIGR01327 PGDH D-3-phosphoglyc 97.5 0.00023 4.9E-09 73.5 8.1 95 44-203 139-235 (525)
145 PF01118 Semialdhyde_dh: Semia 97.5 0.00086 1.9E-08 55.6 10.0 99 45-202 1-102 (121)
146 PRK00048 dihydrodipicolinate r 97.5 0.00052 1.1E-08 64.5 9.4 95 43-203 1-97 (257)
147 COG0569 TrkA K+ transport syst 97.5 0.00035 7.7E-09 64.4 7.9 88 44-183 1-89 (225)
148 PRK00257 erythronate-4-phospha 97.5 0.0003 6.5E-09 69.9 7.8 92 43-203 116-213 (381)
149 PRK13581 D-3-phosphoglycerate 97.5 0.00037 7.9E-09 72.0 8.7 95 43-203 140-236 (526)
150 TIGR00036 dapB dihydrodipicoli 97.5 0.0014 3.1E-08 61.8 12.0 126 43-238 1-129 (266)
151 PRK05442 malate dehydrogenase; 97.4 0.0015 3.2E-08 63.6 11.8 42 41-83 2-46 (326)
152 PRK15438 erythronate-4-phospha 97.4 0.00041 8.9E-09 68.8 7.8 92 43-203 116-213 (378)
153 PF02056 Glyco_hydro_4: Family 97.4 0.0014 2.9E-08 58.8 10.4 85 45-174 1-87 (183)
154 cd00300 LDH_like L-lactate deh 97.4 0.00096 2.1E-08 64.1 10.0 37 46-86 1-37 (300)
155 PRK09496 trkA potassium transp 97.4 0.00049 1.1E-08 68.9 8.3 38 44-87 1-38 (453)
156 TIGR02371 ala_DH_arch alanine 97.4 0.00052 1.1E-08 66.7 8.1 96 41-196 126-221 (325)
157 PRK08618 ornithine cyclodeamin 97.4 0.00084 1.8E-08 65.1 9.4 96 41-196 125-220 (325)
158 PRK08291 ectoine utilization p 97.4 0.00063 1.4E-08 66.2 8.4 82 39-172 128-209 (330)
159 COG0111 SerA Phosphoglycerate 97.4 0.00059 1.3E-08 66.4 8.2 95 43-203 142-239 (324)
160 PRK11790 D-3-phosphoglycerate 97.4 0.00073 1.6E-08 67.7 8.9 92 44-203 152-245 (409)
161 PRK08306 dipicolinate synthase 97.3 0.00072 1.6E-08 64.9 8.3 36 43-84 152-187 (296)
162 PRK13303 L-aspartate dehydroge 97.3 0.0016 3.5E-08 61.4 10.3 93 43-199 1-94 (265)
163 TIGR01759 MalateDH-SF1 malate 97.3 0.0026 5.6E-08 61.9 11.9 40 42-82 2-44 (323)
164 cd01338 MDH_choloroplast_like 97.3 0.0022 4.8E-08 62.3 11.4 40 43-83 2-44 (322)
165 PRK08410 2-hydroxyacid dehydro 97.3 0.00087 1.9E-08 64.7 8.5 92 43-203 145-238 (311)
166 TIGR02354 thiF_fam2 thiamine b 97.3 0.0028 6.1E-08 57.4 11.2 32 44-81 22-54 (200)
167 COG2344 AT-rich DNA-binding pr 97.3 0.001 2.3E-08 59.5 7.8 98 24-182 67-168 (211)
168 COG1712 Predicted dinucleotide 97.3 0.0028 6E-08 58.5 10.6 82 44-182 1-82 (255)
169 PLN02928 oxidoreductase family 97.3 0.00081 1.8E-08 66.0 7.8 108 43-203 159-268 (347)
170 COG1748 LYS9 Saccharopine dehy 97.3 0.00075 1.6E-08 67.0 7.5 88 43-180 1-88 (389)
171 cd05197 GH4_glycoside_hydrolas 97.2 0.0024 5.1E-08 64.4 11.0 110 44-202 1-148 (425)
172 PF10100 DUF2338: Uncharacteri 97.2 0.039 8.4E-07 54.9 18.7 238 43-328 1-272 (429)
173 cd01337 MDH_glyoxysomal_mitoch 97.2 0.0045 9.8E-08 59.9 11.5 34 44-81 1-35 (310)
174 PRK09496 trkA potassium transp 97.2 0.0025 5.4E-08 63.9 10.1 56 26-87 214-269 (453)
175 cd05290 LDH_3 A subgroup of L- 97.1 0.0055 1.2E-07 59.2 12.0 38 45-86 1-38 (307)
176 COG2423 Predicted ornithine cy 97.1 0.0019 4.1E-08 62.9 8.8 97 41-196 128-224 (330)
177 PRK05086 malate dehydrogenase; 97.1 0.0036 7.9E-08 60.5 10.7 37 44-83 1-38 (312)
178 TIGR01757 Malate-DH_plant mala 97.1 0.0043 9.2E-08 61.8 11.3 44 42-86 43-91 (387)
179 PLN00106 malate dehydrogenase 97.1 0.0044 9.6E-08 60.3 11.2 48 31-82 6-54 (323)
180 PRK12549 shikimate 5-dehydroge 97.1 0.0018 3.8E-08 61.8 8.2 66 15-87 101-166 (284)
181 COG0039 Mdh Malate/lactate deh 97.1 0.0036 7.9E-08 60.5 10.3 38 44-85 1-38 (313)
182 PRK00436 argC N-acetyl-gamma-g 97.1 0.0034 7.4E-08 61.4 10.3 41 157-203 65-105 (343)
183 PLN00203 glutamyl-tRNA reducta 97.1 0.0011 2.4E-08 68.3 7.1 50 33-87 256-305 (519)
184 COG1052 LdhA Lactate dehydroge 97.1 0.0026 5.7E-08 61.9 9.3 94 44-203 147-242 (324)
185 PLN02306 hydroxypyruvate reduc 97.1 0.0024 5.2E-08 63.6 9.1 112 43-203 165-278 (386)
186 TIGR01772 MDH_euk_gproteo mala 97.1 0.0039 8.5E-08 60.4 10.3 34 45-82 1-35 (312)
187 cd05298 GH4_GlvA_pagL_like Gly 97.1 0.0058 1.3E-07 61.8 11.9 52 147-202 61-148 (437)
188 PRK07589 ornithine cyclodeamin 97.1 0.0023 5E-08 62.8 8.7 98 41-196 127-224 (346)
189 PRK14194 bifunctional 5,10-met 97.1 0.0018 3.8E-08 62.4 7.7 32 44-81 160-192 (301)
190 PRK06487 glycerate dehydrogena 97.1 0.0019 4.2E-08 62.5 8.0 90 43-203 148-239 (317)
191 PRK00045 hemA glutamyl-tRNA re 97.1 0.0012 2.5E-08 66.5 6.7 38 43-86 182-220 (423)
192 PRK15409 bifunctional glyoxyla 97.1 0.0027 5.8E-08 61.8 9.0 96 43-203 145-242 (323)
193 cd01336 MDH_cytoplasmic_cytoso 97.1 0.0067 1.5E-07 59.0 11.7 40 43-83 2-44 (325)
194 cd01075 NAD_bind_Leu_Phe_Val_D 97.1 0.0034 7.4E-08 56.8 9.0 38 42-85 27-64 (200)
195 KOG2653 6-phosphogluconate deh 97.0 0.003 6.5E-08 61.7 8.7 156 39-265 2-161 (487)
196 cd00704 MDH Malate dehydrogena 97.0 0.0056 1.2E-07 59.6 10.6 38 44-82 1-41 (323)
197 PRK06932 glycerate dehydrogena 97.0 0.0023 5E-08 61.9 7.9 90 44-203 148-239 (314)
198 smart00859 Semialdhyde_dh Semi 97.0 0.0057 1.2E-07 50.4 9.1 40 159-201 64-103 (122)
199 PRK06407 ornithine cyclodeamin 97.0 0.0024 5.1E-08 61.5 7.6 80 41-172 115-194 (301)
200 PRK07340 ornithine cyclodeamin 97.0 0.0029 6.3E-08 60.9 8.2 94 41-196 123-216 (304)
201 TIGR02992 ectoine_eutC ectoine 97.0 0.0029 6.3E-08 61.4 8.3 80 41-172 127-206 (326)
202 cd05296 GH4_P_beta_glucosidase 96.9 0.0088 1.9E-07 60.2 11.5 23 147-169 62-84 (419)
203 PRK06823 ornithine cyclodeamin 96.9 0.0044 9.6E-08 60.0 9.0 97 40-196 125-221 (315)
204 PTZ00325 malate dehydrogenase; 96.9 0.0072 1.6E-07 58.8 10.4 35 43-81 8-43 (321)
205 TIGR01758 MDH_euk_cyt malate d 96.9 0.012 2.5E-07 57.4 11.7 38 45-83 1-41 (324)
206 TIGR01921 DAP-DH diaminopimela 96.9 0.004 8.6E-08 60.6 8.2 35 43-82 3-38 (324)
207 PRK05472 redox-sensing transcr 96.8 0.0046 1E-07 56.3 8.1 99 23-182 66-168 (213)
208 PF02629 CoA_binding: CoA bind 96.8 0.016 3.5E-07 46.1 10.3 90 43-198 3-95 (96)
209 PF02423 OCD_Mu_crystall: Orni 96.8 0.0037 8.1E-08 60.4 7.9 98 41-196 126-223 (313)
210 PRK13301 putative L-aspartate 96.8 0.0096 2.1E-07 56.3 10.3 80 44-182 3-84 (267)
211 TIGR01850 argC N-acetyl-gamma- 96.8 0.0075 1.6E-07 59.1 10.0 45 153-203 61-105 (346)
212 PLN00112 malate dehydrogenase 96.8 0.013 2.8E-07 59.4 11.8 44 42-86 99-147 (444)
213 PRK06046 alanine dehydrogenase 96.8 0.0048 1E-07 59.9 8.3 96 41-196 127-222 (326)
214 cd01078 NAD_bind_H4MPT_DH NADP 96.8 0.0034 7.3E-08 56.0 6.4 37 44-86 29-66 (194)
215 TIGR02356 adenyl_thiF thiazole 96.7 0.015 3.4E-07 52.5 10.7 34 44-82 22-55 (202)
216 TIGR00507 aroE shikimate 5-deh 96.7 0.0073 1.6E-07 56.9 8.9 38 43-86 117-154 (270)
217 cd01487 E1_ThiF_like E1_ThiF_l 96.7 0.021 4.5E-07 50.5 11.2 33 45-82 1-33 (174)
218 PRK13940 glutamyl-tRNA reducta 96.7 0.0027 5.8E-08 63.8 6.1 38 44-86 182-219 (414)
219 PF02254 TrkA_N: TrkA-N domain 96.7 0.0068 1.5E-07 49.1 7.4 37 46-88 1-37 (116)
220 TIGR01035 hemA glutamyl-tRNA r 96.7 0.003 6.4E-08 63.5 6.1 38 44-86 181-218 (417)
221 PF00670 AdoHcyase_NAD: S-aden 96.7 0.012 2.5E-07 51.8 8.8 34 44-83 24-57 (162)
222 PLN02819 lysine-ketoglutarate 96.6 0.014 3E-07 64.8 11.1 44 42-86 568-620 (1042)
223 PRK11579 putative oxidoreducta 96.6 0.015 3.2E-07 56.6 10.3 34 149-182 51-86 (346)
224 PRK14188 bifunctional 5,10-met 96.6 0.0067 1.4E-07 58.3 7.5 30 44-79 159-189 (296)
225 KOG0069 Glyoxylate/hydroxypyru 96.6 0.0086 1.9E-07 58.4 8.1 95 44-203 163-259 (336)
226 PF00899 ThiF: ThiF family; I 96.5 0.061 1.3E-06 45.1 12.3 34 44-82 3-36 (135)
227 COG0673 MviM Predicted dehydro 96.5 0.011 2.4E-07 56.7 8.7 98 42-203 2-103 (342)
228 PF13460 NAD_binding_10: NADH( 96.5 0.0081 1.7E-07 52.2 6.9 35 46-86 1-36 (183)
229 PRK06199 ornithine cyclodeamin 96.5 0.0095 2E-07 59.2 8.1 82 41-171 153-234 (379)
230 PLN02494 adenosylhomocysteinas 96.5 0.015 3.3E-07 59.1 9.5 49 29-84 241-289 (477)
231 PRK05476 S-adenosyl-L-homocyst 96.5 0.014 3.1E-07 58.8 9.2 35 44-84 213-247 (425)
232 TIGR01809 Shik-DH-AROM shikima 96.5 0.0089 1.9E-07 56.9 7.5 68 15-87 97-164 (282)
233 cd01483 E1_enzyme_family Super 96.5 0.053 1.2E-06 45.8 11.5 33 45-82 1-33 (143)
234 PRK00258 aroE shikimate 5-dehy 96.5 0.012 2.5E-07 55.8 8.2 67 15-87 96-162 (278)
235 PRK12475 thiamine/molybdopteri 96.5 0.019 4.1E-07 56.2 9.9 33 44-82 25-58 (338)
236 TIGR00518 alaDH alanine dehydr 96.4 0.014 3.1E-07 57.7 9.0 39 42-86 166-204 (370)
237 PF13380 CoA_binding_2: CoA bi 96.4 0.023 5E-07 46.9 8.9 74 44-183 1-78 (116)
238 COG1486 CelF Alpha-galactosida 96.4 0.028 6E-07 56.7 10.9 83 43-170 3-87 (442)
239 cd00401 AdoHcyase S-adenosyl-L 96.4 0.03 6.6E-07 56.3 11.3 36 44-85 203-238 (413)
240 PRK10669 putative cation:proto 96.4 0.0083 1.8E-07 62.3 7.5 39 44-88 418-456 (558)
241 TIGR00936 ahcY adenosylhomocys 96.4 0.022 4.8E-07 57.1 10.2 35 44-84 196-230 (406)
242 PLN02968 Probable N-acetyl-gam 96.4 0.013 2.8E-07 58.3 8.5 38 41-83 36-74 (381)
243 COG0373 HemA Glutamyl-tRNA red 96.4 0.0084 1.8E-07 60.1 7.2 39 44-87 179-217 (414)
244 TIGR01771 L-LDH-NAD L-lactate 96.4 0.023 4.9E-07 54.7 9.9 35 48-86 1-35 (299)
245 PTZ00075 Adenosylhomocysteinas 96.4 0.01 2.2E-07 60.5 7.6 35 44-84 255-289 (476)
246 PRK14874 aspartate-semialdehyd 96.4 0.017 3.8E-07 56.3 9.0 96 43-200 1-97 (334)
247 PRK04148 hypothetical protein; 96.3 0.018 3.9E-07 49.1 7.6 87 43-186 17-103 (134)
248 PF03435 Saccharop_dh: Sacchar 96.3 0.0074 1.6E-07 59.5 5.9 37 46-87 1-38 (386)
249 cd01492 Aos1_SUMO Ubiquitin ac 96.2 0.064 1.4E-06 48.4 11.2 34 44-82 22-55 (197)
250 PRK04207 glyceraldehyde-3-phos 96.2 0.034 7.3E-07 54.5 10.0 36 147-182 65-100 (341)
251 cd01080 NAD_bind_m-THF_DH_Cycl 96.2 0.014 2.9E-07 51.6 6.6 33 44-82 45-78 (168)
252 PRK09310 aroDE bifunctional 3- 96.1 0.016 3.4E-07 59.4 7.6 64 15-86 306-369 (477)
253 PRK06719 precorrin-2 dehydroge 96.1 0.031 6.8E-07 48.7 8.5 30 44-79 14-43 (157)
254 cd00757 ThiF_MoeB_HesA_family 96.1 0.085 1.8E-06 48.5 11.7 34 44-82 22-55 (228)
255 PRK06718 precorrin-2 dehydroge 96.1 0.036 7.7E-07 50.3 9.0 34 43-82 10-43 (202)
256 COG2910 Putative NADH-flavin r 96.1 0.011 2.4E-07 53.1 5.3 37 44-86 1-38 (211)
257 PRK03659 glutathione-regulated 96.0 0.016 3.5E-07 60.9 7.5 39 43-87 400-438 (601)
258 PRK08300 acetaldehyde dehydrog 96.0 0.06 1.3E-06 52.0 10.6 36 43-83 4-40 (302)
259 PRK07688 thiamine/molybdopteri 96.0 0.045 9.7E-07 53.6 9.7 34 44-82 25-58 (339)
260 PRK05671 aspartate-semialdehyd 95.9 0.054 1.2E-06 53.0 9.8 24 42-65 3-27 (336)
261 cd01486 Apg7 Apg7 is an E1-lik 95.9 0.034 7.5E-07 53.6 8.1 44 154-202 102-145 (307)
262 PRK08644 thiamine biosynthesis 95.8 0.066 1.4E-06 48.9 9.6 34 44-82 29-62 (212)
263 TIGR03215 ac_ald_DH_ac acetald 95.8 0.094 2E-06 50.2 10.8 36 44-84 2-38 (285)
264 PF00070 Pyr_redox: Pyridine n 95.8 0.022 4.8E-07 43.3 5.4 35 45-85 1-35 (80)
265 PRK14179 bifunctional 5,10-met 95.7 0.031 6.6E-07 53.5 7.0 29 44-78 159-188 (284)
266 cd05311 NAD_bind_2_malic_enz N 95.7 0.075 1.6E-06 49.0 9.4 34 44-82 26-61 (226)
267 TIGR02717 AcCoA-syn-alpha acet 95.6 0.075 1.6E-06 53.9 9.8 92 42-202 6-101 (447)
268 CHL00194 ycf39 Ycf39; Provisio 95.6 0.02 4.4E-07 54.7 5.5 35 44-84 1-36 (317)
269 cd01485 E1-1_like Ubiquitin ac 95.5 0.12 2.7E-06 46.6 10.0 34 44-82 20-53 (198)
270 PF03447 NAD_binding_3: Homose 95.5 0.084 1.8E-06 43.1 8.2 48 149-202 46-95 (117)
271 PRK08328 hypothetical protein; 95.5 0.079 1.7E-06 49.0 8.9 38 44-86 28-65 (231)
272 COG0289 DapB Dihydrodipicolina 95.5 0.09 2E-06 49.6 9.1 126 43-239 2-129 (266)
273 COG0002 ArgC Acetylglutamate s 95.4 0.078 1.7E-06 51.9 8.8 35 43-82 2-37 (349)
274 PRK12409 D-amino acid dehydrog 95.4 0.021 4.5E-07 56.4 5.0 33 44-82 2-34 (410)
275 TIGR01761 thiaz-red thiazoliny 95.4 0.09 2E-06 51.6 9.4 40 42-86 2-42 (343)
276 PRK03562 glutathione-regulated 95.4 0.033 7.1E-07 58.9 6.6 40 43-88 400-439 (621)
277 PF05368 NmrA: NmrA-like famil 95.3 0.071 1.5E-06 48.4 7.6 32 46-83 1-33 (233)
278 PRK12548 shikimate 5-dehydroge 95.2 0.068 1.5E-06 51.0 7.8 60 15-82 100-160 (289)
279 PRK05690 molybdopterin biosynt 95.2 0.16 3.5E-06 47.4 9.9 35 43-82 32-66 (245)
280 PRK00711 D-amino acid dehydrog 95.1 0.028 6.2E-07 55.4 4.9 34 44-83 1-34 (416)
281 PRK05600 thiamine biosynthesis 95.1 0.38 8.2E-06 47.7 12.8 34 44-82 42-75 (370)
282 PRK06153 hypothetical protein; 95.1 0.14 3E-06 51.0 9.5 34 44-82 177-210 (393)
283 PRK06753 hypothetical protein; 95.0 0.03 6.5E-07 54.4 4.8 34 44-83 1-34 (373)
284 TIGR02355 moeB molybdopterin s 95.0 0.17 3.7E-06 47.1 9.4 37 44-85 25-61 (240)
285 PRK07364 2-octaprenyl-6-methox 95.0 0.025 5.3E-07 55.8 4.0 46 30-83 7-52 (415)
286 PLN02383 aspartate semialdehyd 95.0 0.17 3.6E-06 49.7 9.7 41 156-202 65-105 (344)
287 PRK05597 molybdopterin biosynt 94.9 0.35 7.5E-06 47.7 12.0 34 44-82 29-62 (355)
288 COG0169 AroE Shikimate 5-dehyd 94.9 0.096 2.1E-06 50.1 7.5 68 15-87 98-165 (283)
289 PRK08762 molybdopterin biosynt 94.8 0.45 9.8E-06 47.1 12.6 34 44-82 136-169 (376)
290 PF13241 NAD_binding_7: Putati 94.8 0.12 2.5E-06 41.6 6.8 34 43-82 7-40 (103)
291 PRK11863 N-acetyl-gamma-glutam 94.8 0.15 3.3E-06 49.4 8.8 39 157-201 47-85 (313)
292 PRK06728 aspartate-semialdehyd 94.8 0.23 5E-06 48.9 10.1 39 157-201 65-103 (347)
293 PF01494 FAD_binding_3: FAD bi 94.7 0.048 1E-06 51.5 5.1 35 44-84 2-36 (356)
294 PRK10206 putative oxidoreducta 94.7 0.14 3E-06 50.0 8.4 33 149-181 51-85 (344)
295 PRK06349 homoserine dehydrogen 94.7 0.15 3.2E-06 51.5 8.8 23 43-65 3-25 (426)
296 PRK08773 2-octaprenyl-3-methyl 94.7 0.046 1E-06 53.7 5.0 36 41-82 4-39 (392)
297 PRK05868 hypothetical protein; 94.6 0.043 9.4E-07 53.9 4.8 36 43-84 1-36 (372)
298 PRK06847 hypothetical protein; 94.6 0.053 1.2E-06 52.6 5.2 36 42-83 3-38 (375)
299 PRK14175 bifunctional 5,10-met 94.5 0.12 2.7E-06 49.5 7.3 32 44-81 159-191 (286)
300 COG4408 Uncharacterized protei 94.5 0.52 1.1E-05 46.0 11.4 240 41-328 2-274 (431)
301 cd01489 Uba2_SUMO Ubiquitin ac 94.5 0.39 8.4E-06 46.6 10.8 36 45-85 1-36 (312)
302 PRK12749 quinate/shikimate deh 94.5 0.2 4.4E-06 47.9 8.8 62 15-83 98-159 (288)
303 TIGR01296 asd_B aspartate-semi 94.4 0.15 3.2E-06 49.9 7.9 39 156-200 57-95 (339)
304 TIGR00978 asd_EA aspartate-sem 94.4 0.29 6.4E-06 47.8 9.9 38 157-200 70-107 (341)
305 PRK08163 salicylate hydroxylas 94.4 0.062 1.3E-06 52.6 5.2 35 43-83 4-38 (396)
306 PRK06270 homoserine dehydrogen 94.3 0.2 4.4E-06 49.0 8.7 48 151-201 78-129 (341)
307 PRK07588 hypothetical protein; 94.2 0.059 1.3E-06 52.9 4.7 34 44-83 1-34 (391)
308 cd01491 Ube1_repeat1 Ubiquitin 94.2 0.49 1.1E-05 45.4 10.7 35 44-83 20-54 (286)
309 TIGR01381 E1_like_apg7 E1-like 94.1 0.29 6.4E-06 51.7 9.7 45 153-202 441-485 (664)
310 PRK07538 hypothetical protein; 94.1 0.066 1.4E-06 53.1 4.7 34 44-83 1-34 (413)
311 PRK08040 putative semialdehyde 94.0 0.33 7.1E-06 47.6 9.3 98 42-202 3-102 (336)
312 COG0686 Ald Alanine dehydrogen 94.0 0.12 2.6E-06 50.0 6.0 43 38-86 163-205 (371)
313 PRK07236 hypothetical protein; 93.9 0.093 2E-06 51.5 5.5 35 43-83 6-40 (386)
314 TIGR01470 cysG_Nterm siroheme 93.9 0.54 1.2E-05 42.7 10.0 33 44-82 10-42 (205)
315 PF13450 NAD_binding_8: NAD(P) 93.9 0.11 2.4E-06 38.7 4.5 30 48-83 1-30 (68)
316 PRK10537 voltage-gated potassi 93.8 0.47 1E-05 47.5 10.1 33 43-81 240-272 (393)
317 PF01266 DAO: FAD dependent ox 93.7 0.1 2.2E-06 49.4 5.1 31 45-81 1-31 (358)
318 PRK05678 succinyl-CoA syntheta 93.7 0.73 1.6E-05 44.3 10.8 93 42-203 7-103 (291)
319 KOG1495 Lactate dehydrogenase 93.6 0.85 1.8E-05 43.5 10.8 41 42-86 19-59 (332)
320 PRK08664 aspartate-semialdehyd 93.6 0.54 1.2E-05 46.1 10.1 36 43-83 3-39 (349)
321 cd01484 E1-2_like Ubiquitin ac 93.6 0.58 1.3E-05 43.5 9.8 33 45-82 1-33 (234)
322 PRK14982 acyl-ACP reductase; P 93.5 0.22 4.8E-06 48.8 7.2 50 32-86 145-195 (340)
323 TIGR03219 salicylate_mono sali 93.5 0.095 2E-06 52.0 4.7 34 44-83 1-35 (414)
324 TIGR01851 argC_other N-acetyl- 93.5 0.36 7.7E-06 46.8 8.4 40 156-201 45-84 (310)
325 PRK12550 shikimate 5-dehydroge 93.5 0.19 4.2E-06 47.7 6.5 64 15-86 97-160 (272)
326 PRK06392 homoserine dehydrogen 93.5 0.34 7.4E-06 47.3 8.3 41 159-202 80-121 (326)
327 PRK14189 bifunctional 5,10-met 93.4 0.25 5.4E-06 47.4 7.0 29 44-78 159-188 (285)
328 COG0300 DltE Short-chain dehyd 93.3 0.14 3.1E-06 48.5 5.2 42 42-89 5-47 (265)
329 PRK07411 hypothetical protein; 93.3 0.59 1.3E-05 46.6 10.0 34 44-82 39-72 (390)
330 PRK07878 molybdopterin biosynt 93.2 0.77 1.7E-05 45.8 10.6 34 44-82 43-76 (392)
331 COG0654 UbiH 2-polyprenyl-6-me 93.2 0.11 2.3E-06 51.4 4.5 33 43-81 2-34 (387)
332 PRK06475 salicylate hydroxylas 93.2 0.11 2.4E-06 51.3 4.6 34 44-83 3-36 (400)
333 PRK06185 hypothetical protein; 93.2 0.13 2.7E-06 50.7 4.9 36 42-83 5-40 (407)
334 PRK11259 solA N-methyltryptoph 93.1 0.12 2.6E-06 50.1 4.6 32 45-82 5-36 (376)
335 PRK08223 hypothetical protein; 93.0 0.63 1.4E-05 44.6 9.3 34 44-82 28-61 (287)
336 cd05191 NAD_bind_amino_acid_DH 93.0 0.19 4.1E-06 38.9 4.7 33 43-80 23-55 (86)
337 PRK06598 aspartate-semialdehyd 92.9 0.5 1.1E-05 46.9 8.6 39 157-201 62-102 (369)
338 PRK06617 2-octaprenyl-6-methox 92.9 0.12 2.6E-06 50.6 4.4 34 43-82 1-34 (374)
339 PRK07494 2-octaprenyl-6-methox 92.9 0.14 3E-06 50.0 4.8 34 44-83 8-41 (388)
340 PRK14106 murD UDP-N-acetylmura 92.9 0.29 6.3E-06 49.1 7.1 34 43-82 5-38 (450)
341 TIGR02360 pbenz_hydroxyl 4-hyd 92.9 0.14 3.1E-06 50.5 4.9 34 44-83 3-36 (390)
342 COG0665 DadA Glycine/D-amino a 92.9 0.17 3.6E-06 49.1 5.2 34 43-82 4-37 (387)
343 PRK00683 murD UDP-N-acetylmura 92.8 0.33 7.3E-06 48.5 7.4 35 44-84 4-38 (418)
344 PRK07045 putative monooxygenas 92.8 0.16 3.5E-06 49.7 5.0 37 42-84 4-40 (388)
345 PF03059 NAS: Nicotianamine sy 92.7 0.58 1.3E-05 44.7 8.5 107 42-201 120-235 (276)
346 PRK12769 putative oxidoreducta 92.7 0.27 5.9E-06 52.2 6.9 35 43-83 327-361 (654)
347 TIGR01988 Ubi-OHases Ubiquinon 92.7 0.14 3.1E-06 49.5 4.5 33 45-83 1-33 (385)
348 TIGR01377 soxA_mon sarcosine o 92.7 0.15 3.2E-06 49.5 4.6 32 45-82 2-33 (380)
349 COG1064 AdhP Zn-dependent alco 92.7 0.47 1E-05 46.5 8.0 38 43-86 167-204 (339)
350 PRK08013 oxidoreductase; Provi 92.7 0.15 3.3E-06 50.3 4.7 34 44-83 4-37 (400)
351 TIGR00561 pntA NAD(P) transhyd 92.7 0.43 9.3E-06 49.4 8.0 38 43-86 164-201 (511)
352 PRK00961 H(2)-dependent methyl 92.6 1.4 3.1E-05 42.1 10.6 129 136-280 117-248 (342)
353 PRK08849 2-octaprenyl-3-methyl 92.6 0.16 3.5E-06 49.9 4.7 33 44-82 4-36 (384)
354 TIGR03466 HpnA hopanoid-associ 92.5 0.17 3.6E-06 47.7 4.5 35 44-84 1-36 (328)
355 PRK14192 bifunctional 5,10-met 92.4 0.37 8.1E-06 46.1 6.8 31 44-80 160-191 (283)
356 PLN02172 flavin-containing mon 92.4 0.2 4.3E-06 51.1 5.2 36 43-84 10-45 (461)
357 PRK12809 putative oxidoreducta 92.4 0.31 6.8E-06 51.6 6.8 55 23-83 284-344 (639)
358 PRK14027 quinate/shikimate deh 92.3 0.31 6.7E-06 46.6 6.1 66 15-87 101-166 (283)
359 TIGR02028 ChlP geranylgeranyl 92.3 0.18 4E-06 50.0 4.8 34 44-83 1-34 (398)
360 PLN00141 Tic62-NAD(P)-related 92.3 0.2 4.3E-06 46.1 4.7 37 42-84 16-53 (251)
361 PRK08020 ubiF 2-octaprenyl-3-m 92.2 0.18 4E-06 49.2 4.6 34 43-82 5-38 (391)
362 PRK15116 sulfur acceptor prote 92.1 0.24 5.3E-06 47.0 5.1 54 26-84 10-66 (268)
363 PLN02464 glycerol-3-phosphate 92.0 0.27 5.8E-06 52.1 5.8 52 24-81 52-103 (627)
364 PRK08243 4-hydroxybenzoate 3-m 92.0 0.21 4.6E-06 49.1 4.8 34 44-83 3-36 (392)
365 PF08484 Methyltransf_14: C-me 91.9 0.57 1.2E-05 41.0 6.9 102 25-186 50-151 (160)
366 PRK01747 mnmC bifunctional tRN 91.9 0.19 4.1E-06 53.3 4.5 33 44-82 261-293 (662)
367 TIGR01318 gltD_gamma_fam gluta 91.9 0.41 8.8E-06 48.7 6.8 35 43-83 141-175 (467)
368 PRK05335 tRNA (uracil-5-)-meth 91.8 0.23 4.9E-06 50.3 4.7 34 43-82 2-35 (436)
369 PLN02985 squalene monooxygenas 91.8 0.28 6E-06 50.7 5.5 35 43-83 43-77 (514)
370 PRK01710 murD UDP-N-acetylmura 91.8 0.4 8.6E-06 48.6 6.6 34 44-83 15-48 (458)
371 PRK06126 hypothetical protein; 91.8 0.25 5.4E-06 51.0 5.2 35 43-83 7-41 (545)
372 PRK12810 gltD glutamate syntha 91.8 0.4 8.7E-06 48.7 6.6 35 43-83 143-177 (471)
373 PRK08132 FAD-dependent oxidore 91.8 0.25 5.4E-06 51.0 5.2 35 43-83 23-57 (547)
374 PF00743 FMO-like: Flavin-bind 91.7 0.25 5.4E-06 51.3 5.1 35 44-84 2-36 (531)
375 TIGR03364 HpnW_proposed FAD de 91.7 0.23 4.9E-06 48.1 4.6 32 45-82 2-33 (365)
376 PTZ00367 squalene epoxidase; P 91.7 0.29 6.4E-06 51.2 5.6 34 43-82 33-66 (567)
377 cd05212 NAD_bind_m-THF_DH_Cycl 91.6 0.76 1.7E-05 39.4 7.2 36 153-196 64-99 (140)
378 TIGR01723 hmd_TIGR 5,10-methen 91.6 2.3 5E-05 40.8 10.8 127 137-280 116-246 (340)
379 PLN00093 geranylgeranyl diphos 91.6 0.29 6.3E-06 49.7 5.4 35 43-83 39-73 (450)
380 PRK12770 putative glutamate sy 91.6 0.32 7E-06 47.3 5.5 36 42-83 17-52 (352)
381 KOG1502 Flavonol reductase/cin 91.5 0.71 1.5E-05 45.0 7.7 37 42-84 5-42 (327)
382 PRK08850 2-octaprenyl-6-methox 91.5 0.22 4.8E-06 49.2 4.3 32 44-81 5-36 (405)
383 PRK12814 putative NADPH-depend 91.5 0.3 6.5E-06 51.9 5.5 36 42-83 192-227 (652)
384 PRK12779 putative bifunctional 91.5 0.26 5.7E-06 54.6 5.2 40 37-82 300-339 (944)
385 PRK05714 2-octaprenyl-3-methyl 91.4 0.21 4.5E-06 49.2 4.0 32 45-82 4-35 (405)
386 PRK07877 hypothetical protein; 91.4 0.67 1.4E-05 49.9 8.0 34 44-82 108-141 (722)
387 cd00762 NAD_bind_malic_enz NAD 91.4 0.92 2E-05 42.8 8.0 47 152-202 96-146 (254)
388 PRK09126 hypothetical protein; 91.4 0.25 5.4E-06 48.3 4.5 34 44-83 4-37 (392)
389 PRK00536 speE spermidine synth 91.4 1.5 3.2E-05 41.6 9.4 101 41-200 71-173 (262)
390 PRK08374 homoserine dehydrogen 91.3 1.3 2.8E-05 43.3 9.4 43 153-201 82-126 (336)
391 PLN02852 ferredoxin-NADP+ redu 91.3 0.34 7.4E-06 49.9 5.5 38 41-84 24-63 (491)
392 PRK07608 ubiquinone biosynthes 91.3 0.27 5.9E-06 47.9 4.7 34 44-83 6-39 (388)
393 PRK10538 malonic semialdehyde 91.3 0.32 6.8E-06 44.4 4.8 37 44-86 1-38 (248)
394 TIGR03736 PRTRC_ThiF PRTRC sys 91.2 0.32 6.9E-06 45.6 4.7 40 42-82 10-55 (244)
395 KOG1494 NAD-dependent malate d 91.0 0.79 1.7E-05 43.9 7.2 45 34-82 19-64 (345)
396 PRK10792 bifunctional 5,10-met 91.0 0.92 2E-05 43.5 7.8 31 44-80 160-191 (285)
397 PRK05884 short chain dehydroge 90.9 0.32 6.9E-06 44.0 4.4 37 44-86 1-38 (223)
398 PLN02520 bifunctional 3-dehydr 90.9 0.46 1E-05 49.3 6.1 74 5-86 335-416 (529)
399 PRK11749 dihydropyrimidine deh 90.9 0.35 7.5E-06 48.9 5.1 36 42-83 139-174 (457)
400 PLN00016 RNA-binding protein; 90.8 0.27 5.8E-06 48.3 4.1 38 41-84 50-92 (378)
401 PRK08340 glucose-1-dehydrogena 90.8 0.36 7.8E-06 44.3 4.7 37 44-86 1-38 (259)
402 PRK13369 glycerol-3-phosphate 90.8 0.36 7.8E-06 49.5 5.1 36 41-82 4-39 (502)
403 PRK07454 short chain dehydroge 90.7 0.45 9.8E-06 42.9 5.3 38 42-85 5-43 (241)
404 PRK08267 short chain dehydroge 90.7 0.39 8.5E-06 43.9 4.9 38 43-86 1-39 (260)
405 PRK09424 pntA NAD(P) transhydr 90.7 1.1 2.4E-05 46.3 8.6 39 43-87 165-203 (509)
406 PRK07102 short chain dehydroge 90.7 0.39 8.5E-06 43.5 4.8 38 43-86 1-39 (243)
407 COG3349 Uncharacterized conser 90.7 0.31 6.6E-06 49.9 4.4 34 44-83 1-34 (485)
408 TIGR02032 GG-red-SF geranylger 90.7 0.36 7.8E-06 44.5 4.6 33 45-83 2-34 (295)
409 PRK07023 short chain dehydroge 90.6 0.38 8.3E-06 43.5 4.7 35 43-83 1-36 (243)
410 PRK08244 hypothetical protein; 90.6 0.32 6.9E-06 49.5 4.6 35 44-84 3-37 (493)
411 PRK08177 short chain dehydroge 90.5 0.49 1.1E-05 42.4 5.3 38 43-86 1-39 (225)
412 COG0136 Asd Aspartate-semialde 90.5 1.5 3.3E-05 42.9 8.9 39 158-202 64-102 (334)
413 PRK06183 mhpA 3-(3-hydroxyphen 90.5 0.35 7.6E-06 49.9 4.8 35 43-83 10-44 (538)
414 cd00755 YgdL_like Family of ac 90.4 0.51 1.1E-05 43.8 5.4 34 44-82 12-45 (231)
415 PRK06184 hypothetical protein; 90.4 0.38 8.2E-06 49.1 4.9 35 44-84 4-38 (502)
416 PLN02927 antheraxanthin epoxid 90.4 0.35 7.5E-06 51.6 4.7 34 43-82 81-114 (668)
417 KOG1399 Flavin-containing mono 90.4 0.31 6.8E-06 49.6 4.2 36 43-84 6-41 (448)
418 PTZ00188 adrenodoxin reductase 90.3 0.52 1.1E-05 48.6 5.8 36 42-83 38-74 (506)
419 PRK03369 murD UDP-N-acetylmura 90.3 0.58 1.3E-05 47.9 6.1 34 44-83 13-46 (488)
420 PRK08017 oxidoreductase; Provi 90.2 0.44 9.6E-06 43.3 4.8 37 44-86 3-40 (256)
421 PRK11728 hydroxyglutarate oxid 90.2 0.43 9.3E-06 47.0 5.0 35 44-82 3-37 (393)
422 TIGR01316 gltA glutamate synth 90.2 0.67 1.5E-05 46.9 6.4 34 43-82 133-166 (449)
423 PTZ00383 malate:quinone oxidor 90.1 0.45 9.7E-06 49.1 5.2 37 42-82 44-80 (497)
424 TIGR00137 gid_trmFO tRNA:m(5)U 90.0 0.38 8.2E-06 48.8 4.4 33 45-83 2-34 (433)
425 TIGR01292 TRX_reduct thioredox 89.9 0.42 9.2E-06 44.3 4.5 32 45-82 2-33 (300)
426 TIGR01745 asd_gamma aspartate- 89.9 1.5 3.3E-05 43.4 8.5 40 157-202 61-102 (366)
427 COG1063 Tdh Threonine dehydrog 89.9 1.7 3.7E-05 42.5 8.9 37 45-86 171-207 (350)
428 TIGR02130 dapB_plant dihydrodi 89.9 3.8 8.3E-05 39.1 10.8 70 151-240 58-129 (275)
429 PRK11101 glpA sn-glycerol-3-ph 89.8 0.49 1.1E-05 49.1 5.2 33 44-82 7-39 (546)
430 PRK11445 putative oxidoreducta 89.8 0.43 9.2E-06 46.4 4.5 34 43-83 1-34 (351)
431 PRK11908 NAD-dependent epimera 89.8 0.47 1E-05 45.7 4.7 36 43-83 1-37 (347)
432 TIGR01373 soxB sarcosine oxida 89.7 0.5 1.1E-05 46.6 5.0 33 45-82 32-65 (407)
433 cd01488 Uba3_RUB Ubiquitin act 89.7 0.82 1.8E-05 44.0 6.2 33 45-82 1-33 (291)
434 PLN02695 GDP-D-mannose-3',5'-e 89.7 0.48 1.1E-05 46.5 4.8 35 42-82 20-55 (370)
435 PRK08294 phenol 2-monooxygenas 89.6 0.41 8.9E-06 50.7 4.6 36 43-84 32-68 (634)
436 TIGR01019 sucCoAalpha succinyl 89.6 3.2 7E-05 39.8 10.3 92 43-202 6-100 (286)
437 PRK07231 fabG 3-ketoacyl-(acyl 89.6 0.58 1.3E-05 42.2 5.0 37 44-86 6-43 (251)
438 PLN03075 nicotianamine synthas 89.6 3.3 7.1E-05 40.0 10.3 41 42-86 123-163 (296)
439 PRK12266 glpD glycerol-3-phosp 89.6 0.53 1.2E-05 48.4 5.2 33 43-81 6-38 (508)
440 TIGR01317 GOGAT_sm_gam glutama 89.5 0.88 1.9E-05 46.6 6.7 34 44-83 144-177 (485)
441 TIGR00031 UDP-GALP_mutase UDP- 89.5 0.51 1.1E-05 47.0 4.8 33 44-82 2-34 (377)
442 TIGR01989 COQ6 Ubiquinone bios 89.5 0.41 9E-06 48.0 4.3 31 45-81 2-36 (437)
443 PRK12831 putative oxidoreducta 89.3 0.62 1.3E-05 47.4 5.4 35 42-82 139-173 (464)
444 PRK15181 Vi polysaccharide bio 89.2 0.73 1.6E-05 44.6 5.7 36 42-83 14-50 (348)
445 PRK07326 short chain dehydroge 89.2 0.71 1.5E-05 41.4 5.2 37 44-86 7-44 (237)
446 PRK13512 coenzyme A disulfide 89.0 0.62 1.4E-05 46.8 5.2 37 43-83 1-37 (438)
447 PRK06101 short chain dehydroge 89.0 0.59 1.3E-05 42.4 4.6 37 44-86 2-39 (240)
448 PF13738 Pyr_redox_3: Pyridine 89.0 0.6 1.3E-05 40.9 4.5 33 47-85 1-34 (203)
449 PF00185 OTCace: Aspartate/orn 88.9 7.3 0.00016 33.8 11.2 33 44-82 3-37 (158)
450 COG0644 FixC Dehydrogenases (f 88.9 0.57 1.2E-05 46.4 4.8 36 43-84 3-38 (396)
451 PRK05562 precorrin-2 dehydroge 88.8 3.5 7.5E-05 38.2 9.5 34 43-82 25-58 (223)
452 TIGR02023 BchP-ChlP geranylger 88.8 0.56 1.2E-05 46.1 4.6 31 45-81 2-32 (388)
453 COG4091 Predicted homoserine d 88.8 4.5 9.7E-05 40.1 10.5 42 40-86 14-56 (438)
454 PRK07233 hypothetical protein; 88.8 0.54 1.2E-05 46.2 4.5 32 45-82 1-32 (434)
455 PRK01438 murD UDP-N-acetylmura 88.7 0.65 1.4E-05 47.1 5.1 34 43-82 16-49 (480)
456 PRK07190 hypothetical protein; 88.7 0.66 1.4E-05 47.6 5.1 34 44-83 6-39 (487)
457 PRK13977 myosin-cross-reactive 88.6 0.93 2E-05 47.5 6.2 57 21-83 4-60 (576)
458 COG1648 CysG Siroheme synthase 88.6 3.1 6.6E-05 38.1 8.9 33 44-82 13-45 (210)
459 PRK05732 2-octaprenyl-6-methox 88.6 0.56 1.2E-05 45.7 4.4 33 44-81 4-38 (395)
460 PRK05257 malate:quinone oxidor 88.6 0.65 1.4E-05 47.8 5.0 37 43-83 5-41 (494)
461 PRK06194 hypothetical protein; 88.5 0.91 2E-05 42.2 5.6 37 44-86 7-44 (287)
462 PRK06834 hypothetical protein; 88.5 0.6 1.3E-05 47.8 4.7 34 44-83 4-37 (488)
463 PRK10157 putative oxidoreducta 88.5 0.64 1.4E-05 46.6 4.9 35 43-83 5-39 (428)
464 KOG2741 Dimeric dihydrodiol de 88.5 2.7 5.8E-05 41.3 8.8 89 40-182 3-94 (351)
465 PRK07208 hypothetical protein; 88.5 0.69 1.5E-05 46.7 5.1 35 42-82 3-37 (479)
466 PRK07024 short chain dehydroge 88.5 0.71 1.5E-05 42.3 4.8 37 44-86 3-40 (257)
467 PRK10675 UDP-galactose-4-epime 88.4 0.72 1.6E-05 43.9 4.9 33 44-82 1-34 (338)
468 PRK05993 short chain dehydroge 88.4 0.71 1.5E-05 43.0 4.8 37 44-86 5-42 (277)
469 PRK12771 putative glutamate sy 88.4 0.65 1.4E-05 48.3 4.9 34 43-82 137-170 (564)
470 PRK12939 short chain dehydroge 88.3 0.96 2.1E-05 40.7 5.5 37 44-86 8-45 (250)
471 TIGR01408 Ube1 ubiquitin-activ 88.3 1.7 3.7E-05 48.6 8.3 35 44-83 25-59 (1008)
472 PRK07523 gluconate 5-dehydroge 88.2 0.95 2.1E-05 41.2 5.4 37 44-86 11-48 (255)
473 PRK05653 fabG 3-ketoacyl-(acyl 88.2 0.88 1.9E-05 40.6 5.1 37 44-86 6-43 (246)
474 PRK04176 ribulose-1,5-biphosph 88.2 1.1 2.4E-05 42.1 5.9 34 44-83 26-59 (257)
475 COG5495 Uncharacterized conser 88.2 14 0.00031 34.7 12.8 156 158-333 65-240 (289)
476 PRK06567 putative bifunctional 88.2 0.68 1.5E-05 51.4 5.1 34 42-81 382-415 (1028)
477 PF07992 Pyr_redox_2: Pyridine 88.1 0.89 1.9E-05 39.6 5.0 32 45-82 1-32 (201)
478 PLN02214 cinnamoyl-CoA reducta 88.1 0.81 1.8E-05 44.3 5.1 38 41-84 8-46 (342)
479 PRK07109 short chain dehydroge 88.1 0.91 2E-05 43.9 5.5 38 43-86 8-46 (334)
480 PRK07333 2-octaprenyl-6-methox 88.1 0.69 1.5E-05 45.3 4.7 36 44-83 2-37 (403)
481 PRK07774 short chain dehydroge 88.0 1.1 2.3E-05 40.6 5.6 36 44-85 7-43 (250)
482 PLN02778 3,5-epimerase/4-reduc 88.0 1.1 2.4E-05 42.6 5.9 39 37-81 3-42 (298)
483 PRK06057 short chain dehydroge 88.0 0.83 1.8E-05 41.7 4.9 36 44-85 8-44 (255)
484 TIGR01984 UbiH 2-polyprenyl-6- 87.9 0.65 1.4E-05 45.1 4.4 34 45-83 1-34 (382)
485 PRK07060 short chain dehydroge 87.9 0.82 1.8E-05 41.1 4.7 37 44-86 10-47 (245)
486 PRK12829 short chain dehydroge 87.9 0.8 1.7E-05 41.7 4.7 37 44-86 12-49 (264)
487 PRK06124 gluconate 5-dehydroge 87.9 1 2.2E-05 41.0 5.4 38 43-86 11-49 (256)
488 PRK07845 flavoprotein disulfid 87.8 0.74 1.6E-05 46.7 4.8 34 43-82 1-34 (466)
489 PRK08255 salicylyl-CoA 5-hydro 87.8 0.79 1.7E-05 49.7 5.3 36 44-83 1-36 (765)
490 PF03486 HI0933_like: HI0933-l 87.8 0.71 1.5E-05 46.4 4.6 38 45-88 2-39 (409)
491 TIGR02733 desat_CrtD C-3',4' d 87.7 0.75 1.6E-05 46.8 4.8 34 44-83 2-35 (492)
492 PRK08703 short chain dehydroge 87.7 1.1 2.4E-05 40.4 5.5 37 44-86 7-44 (239)
493 PRK07890 short chain dehydroge 87.6 0.82 1.8E-05 41.5 4.6 37 44-86 6-43 (258)
494 PF01262 AlaDh_PNT_C: Alanine 87.6 0.95 2E-05 39.5 4.8 39 42-86 19-57 (168)
495 PLN02657 3,8-divinyl protochlo 87.6 0.83 1.8E-05 45.3 4.9 36 43-84 60-96 (390)
496 PLN02896 cinnamyl-alcohol dehy 87.5 0.95 2.1E-05 43.7 5.2 38 41-84 8-46 (353)
497 PLN02487 zeta-carotene desatur 87.5 0.92 2E-05 47.6 5.4 36 42-83 74-109 (569)
498 PRK13394 3-hydroxybutyrate deh 87.4 1.2 2.6E-05 40.5 5.6 37 44-86 8-45 (262)
499 PRK06949 short chain dehydroge 87.4 0.89 1.9E-05 41.3 4.7 37 44-86 10-47 (258)
500 KOG2614 Kynurenine 3-monooxyge 87.4 0.86 1.9E-05 45.7 4.8 35 43-83 2-36 (420)
No 1
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=4.4e-49 Score=375.24 Aligned_cols=229 Identities=26% Similarity=0.422 Sum_probs=208.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
+|||+|+|+|+||++||..|+++ | |+|++|.|+++.+++|+.+| +|++|+|++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n-g-----~~V~lw~r~~~~~~~i~~~~----------------~N~~yLp~i----- 53 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN-G-----HEVRLWGRDEEIVAEINETR----------------ENPKYLPGI----- 53 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc-C-----CeeEEEecCHHHHHHHHhcC----------------cCccccCCc-----
Confidence 48999999999999999999999 8 99999999999877654322 488899875
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~ 202 (333)
.+|+ ++.+++|++++++++|+|+++||+++++++++++++++.+ ++.+|+++||+++
T Consensus 54 --~lp~------------------~l~at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~---~~~iv~~sKGie~ 110 (329)
T COG0240 54 --LLPP------------------NLKATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLK---DAIIVSATKGLEP 110 (329)
T ss_pred --cCCc------------------ccccccCHHHHHhcCCEEEEECChHHHHHHHHHHhhhccC---CCeEEEEeccccC
Confidence 3442 6899999999999999999999999999999999988877 7899999999999
Q ss_pred cccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecCChhHHH
Q 019978 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (333)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~Di~gve 281 (333)
+ +.+++|+++++.+|. .++++++||+||.|++++.|+.+++ +.+.+.++.++.+|++.+|++|.++|++|+|
T Consensus 111 ~-----t~~l~seii~e~l~~--~~~~vLSGPs~A~EVa~g~pta~~vas~d~~~a~~v~~~f~~~~Frvy~~~Dv~Gve 183 (329)
T COG0240 111 E-----TGRLLSEIIEEELPD--NPIAVLSGPSFAKEVAQGLPTAVVVASNDQEAAEKVQALFSSPYFRVYTSTDVIGVE 183 (329)
T ss_pred C-----CcchHHHHHHHHcCC--CeEEEEECccHHHHHhcCCCcEEEEecCCHHHHHHHHHHhCCCcEEEEecCchhhhH
Confidence 7 579999999999974 3489999999999999999998766 5677899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCC
Q 019978 282 VMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSW 329 (333)
Q Consensus 282 ~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~ 329 (333)
++||||||+||+|||++|+++ |+|++++|++|+++||..+ .+||++.
T Consensus 184 igGAlKNViAIA~Gi~dGlg~-G~NakaalitrGL~Em~rlg~~lG~~~ 231 (329)
T COG0240 184 IGGALKNVIAIAAGIADGLGL-GDNAKAALITRGLAEMTRLGVALGAKP 231 (329)
T ss_pred HHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHhHHHHHHHHHHHhCCCc
Confidence 999999999999999999999 7999999999999999999 9999984
No 2
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=5.1e-46 Score=363.12 Aligned_cols=248 Identities=27% Similarity=0.399 Sum_probs=211.1
Q ss_pred HHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCC--CCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhc
Q 019978 33 RRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYL--RDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRR 110 (333)
Q Consensus 33 ~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~--~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~ 110 (333)
|.|+++..++.|||+|||+|+||+++|..|+++ |.- ..+|+|.+|.|+++.- .+++.+.|++.+ +|
T Consensus 1 ~~~~~~~~~~~~ki~ViGaG~wGtAlA~~l~~n-~~~~~~~~~~V~lw~~~~~~~----~~~~~~~in~~~-------~N 68 (365)
T PTZ00345 1 RSLFQKLRCGPLKVSVIGSGNWGSAISKVVGEN-TQRNYIFHNEVRMWVLEEIVE----GEKLSDIINTKH-------EN 68 (365)
T ss_pred CcchhhcccCCCeEEEECCCHHHHHHHHHHHhc-CCcccCCCCeEEEEEeccccc----chHHHHHHHhcC-------CC
Confidence 346788889999999999999999999999998 510 0016999999998631 112233344443 58
Q ss_pred ccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHh--hhhccC
Q 019978 111 CAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR--YWKERI 188 (333)
Q Consensus 111 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~--~l~~~~ 188 (333)
++|+|++ +|| .++.+++|++++++++|+||++||++.++++++++++ ++++
T Consensus 69 ~~ylp~~-------~Lp------------------~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~-- 121 (365)
T PTZ00345 69 VKYLPGI-------KLP------------------DNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKK-- 121 (365)
T ss_pred cccCCCC-------cCC------------------CceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCC--
Confidence 8888875 354 2788999999999999999999999999999999998 7765
Q ss_pred CCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCC
Q 019978 189 TVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRP 267 (333)
Q Consensus 189 ~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~ 267 (333)
++++||++||++.++ ++..++++++++.++. ++++++||+||.|++++.|+.+++ +.+.+.++.++++|+++
T Consensus 122 -~~~iIS~aKGIe~~t---~~~~~~sevi~e~l~~---~~~~LsGPs~A~Eva~~~pt~~vias~~~~~a~~~~~lf~~~ 194 (365)
T PTZ00345 122 -HARAISLTKGIIVEN---GKPVLCSDVIEEELGI---PCCALSGANVANDVAREEFSEATIGCEDKDDALIWQRLFDRP 194 (365)
T ss_pred -CCEEEEEeCCcccCC---CCcccHHHHHHHHhCC---CeEEEECCCHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCC
Confidence 678999999999863 1247899999999963 588999999999999999988765 66778999999999999
Q ss_pred CeEEEecCChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCC
Q 019978 268 HFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGR 327 (333)
Q Consensus 268 ~~~v~~s~Di~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~ 327 (333)
+|+++.++|++|+|+||+|||||||++||++|+++ |+|++++|++++++||..+ +++|+
T Consensus 195 ~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~-G~N~kaalitrgl~Em~~l~~a~g~ 254 (365)
T PTZ00345 195 YFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGL-GTNTKSAIIRIGLEEMKLFGKIFFP 254 (365)
T ss_pred cEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999 7999999999999999999 99975
No 3
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=100.00 E-value=5.4e-44 Score=346.48 Aligned_cols=239 Identities=24% Similarity=0.347 Sum_probs=203.0
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCC---CeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRD---KVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~---~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
||+|||+|+||+++|..|+++ |...+ .|+|++|.|+++.- .+.+.+.|++.+ .|++|+|++
T Consensus 1 kI~VIGaG~wGtALA~~la~n-g~~~~~~~~~~V~lw~~~~~~~----~~~~~~~in~~~-------~n~~ylpgi---- 64 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN-ARALPELFEESVRMWVFEEEIE----GRNLTEIINTTH-------ENVKYLPGI---- 64 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCcccccCCceEEEEEeccccC----CHHHHHHHHhcC-------CCccccCCC----
Confidence 699999999999999999998 51100 17999999965210 112334455443 477888764
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
++| .++++++|++++++++|+||++||+++++++++++++++++ ++++|+++||++
T Consensus 65 ---~Lp------------------~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~---~~~iVs~tKGie 120 (342)
T TIGR03376 65 ---KLP------------------ANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKP---NARAISCIKGLE 120 (342)
T ss_pred ---cCC------------------CCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCC---CCEEEEEeCCcc
Confidence 343 26889999999999999999999999999999999999976 789999999998
Q ss_pred ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCC----hhhHHHHHHHhCCCCeEEEecCC
Q 019978 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGA----EKWRKPLAKFLRRPHFTVWDNGD 276 (333)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~----~~~~~~l~~ll~~~~~~v~~s~D 276 (333)
.+. ++..++++++++.++ .++++++||++|.|++++.|+.+++ +.+ .+.++.++++|++++|+++.++|
T Consensus 121 ~~~---~~~~~~se~i~e~l~---~~~~~lsGP~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~D 194 (342)
T TIGR03376 121 VSK---DGVKLLSDIIEEELG---IPCGVLSGANLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDD 194 (342)
T ss_pred cCC---CcCccHHHHHHHHhC---CCeEEeeCcchHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCC
Confidence 762 357899999999995 3588999999999999999988765 556 68899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCCC
Q 019978 277 LVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSWQ 330 (333)
Q Consensus 277 i~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~~ 330 (333)
++|+|+||+|||||||++||++|+++ |+|++++|++++++||..+ +++|++.+
T Consensus 195 v~GvEl~galKNv~AIa~Gi~~Gl~~-g~N~~aalitrgl~Em~~l~~~~g~~~~ 248 (342)
T TIGR03376 195 VAGVEIAGALKNVVAIAAGFVDGLGW-GDNAKAAVMRRGLLEMIKFARMFFPTGE 248 (342)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999 7999999999999999999 99999764
No 4
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=100.00 E-value=1.9e-40 Score=313.51 Aligned_cols=261 Identities=35% Similarity=0.446 Sum_probs=225.6
Q ss_pred hHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCC-CCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhH
Q 019978 25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYL-RDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (333)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~-~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~ 103 (333)
.++++++.++..+..+..+.||+|||+|+||+++|+.++.+++.+ ....+|++|.+.++.-.+ .++|.++||++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~--~~~L~eiIN~~he- 79 (372)
T KOG2711|consen 3 DEIKLDESIRNLGKAERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE--AEKLTEIINSRHE- 79 (372)
T ss_pred cccccchhhhccCchhcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh--hHHHHHHhccccc-
Confidence 467889999999999999999999999999999999999885322 111479999998865443 4789999999984
Q ss_pred HHHhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhh
Q 019978 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY 183 (333)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~ 183 (333)
|++|+|+. ++|+ ++.+++|+.+++++||++|+++|.|++..++++|+.+
T Consensus 80 ------N~KYlpg~-------~lP~------------------NvvAv~dl~ea~~dADilvf~vPhQf~~~ic~~l~g~ 128 (372)
T KOG2711|consen 80 ------NVKYLPGI-------KLPE------------------NVVAVPDLVEAAKDADILVFVVPHQFIPRICEQLKGY 128 (372)
T ss_pred ------cccccCCc-------cCCC------------------CeEecchHHHHhccCCEEEEeCChhhHHHHHHHHhcc
Confidence 89999875 4542 6889999999999999999999999999999999999
Q ss_pred hhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChh--hHHHHH
Q 019978 184 WKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEK--WRKPLA 261 (333)
Q Consensus 184 l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~--~~~~l~ 261 (333)
+++ +...||++||++.... .++..++|++|.+.+|.+ +.++.|||+|.|++++.++.++++..++ .-..++
T Consensus 129 vk~---~~~aISL~KG~e~~~~-g~~i~liS~iI~~~lgI~---~~vL~GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~ 201 (372)
T KOG2711|consen 129 VKP---GATAISLIKGVEVGEE-GPGIRLISQIIHRALGIP---CSVLMGANIASEVANEKFCETTIGYKDKKEAGILLK 201 (372)
T ss_pred cCC---CCeEEEeecceeccCC-CCceeehHHHHHHHhCCC---ceeecCCchHHHHHhccccceeEeccchhhcchHHH
Confidence 998 7888999999997531 124789999999999864 6799999999999999999888765433 233599
Q ss_pred HHhCCCCeEEEecCChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH--HHCCC
Q 019978 262 KFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM--HGMGR 327 (333)
Q Consensus 262 ~ll~~~~~~v~~s~Di~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l--~~~G~ 327 (333)
++|++++|+++..+|..++|+||+||||+|+++|+++||++ ++|.+++++.+++.||..+ .=+.+
T Consensus 202 ~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~-g~NTkaAi~r~Gl~Em~~F~~~f~p~ 268 (372)
T KOG2711|consen 202 KLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGL-GNNTKAAIIRLGLLEMIKFATHFYPG 268 (372)
T ss_pred HHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccC-CcchHHHHHHhhHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999 7999999999999999998 35555
No 5
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-38 Score=307.67 Aligned_cols=232 Identities=28% Similarity=0.432 Sum_probs=197.9
Q ss_pred CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
..+|||+|||+|+||+++|..|+++ | +|++|.|+++++++++.++ .|..+++.
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~-g------~v~l~~~~~~~~~~i~~~~----------------~~~~~l~~---- 57 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARR-G------PTLQWVRSAETADDINDNH----------------RNSRYLGN---- 57 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHC-C------CEEEEeCCHHHHHHHHhcC----------------CCcccCCC----
Confidence 3468999999999999999999998 5 5889999988776554322 13334431
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
+.+++ .++.+++|++++++++|+||++||+++++++++++++++++ ++++|+++||+
T Consensus 58 --~~~l~------------------~~i~~t~d~~~a~~~aDlVilavps~~~~~vl~~i~~~l~~---~~~vIsl~kGi 114 (341)
T PRK12439 58 --DVVLS------------------DTLRATTDFAEAANCADVVVMGVPSHGFRGVLTELAKELRP---WVPVVSLVKGL 114 (341)
T ss_pred --CcccC------------------CCeEEECCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCC---CCEEEEEEeCC
Confidence 01121 25778899988899999999999999999999999999986 67899999999
Q ss_pred cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecCChhH
Q 019978 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (333)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~Di~g 279 (333)
+.+ +.+++++++++.++. .++.+++||+++.++.++.++.+++ +.+++.++.++++|++++|+++.++|++|
T Consensus 115 ~~~-----t~~~~se~i~~~l~~--~~~~~l~GP~~a~ev~~g~~t~~via~~~~~~~~~v~~lf~~~~~~v~~s~Di~g 187 (341)
T PRK12439 115 EQG-----TNMRMSQIIEEVLPG--HPAGILAGPNIAREVAEGYAAAAVLAMPDQHLATRLSPLFRTRRFRVYTTDDVVG 187 (341)
T ss_pred cCC-----CCCcHHHHHHHHcCC--CCeEEEECCCHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCCEEEEEcCchHH
Confidence 986 568999999998863 4577899999999999999887655 55667899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCCC
Q 019978 280 HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSWQ 330 (333)
Q Consensus 280 ve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~~ 330 (333)
+||||++||++||++|+++|+++ ++|+++++++++++||..+ +++|++..
T Consensus 188 ve~~~alkNv~aia~G~~~g~~~-g~n~~aali~~~~~E~~~~~~a~G~~~~ 238 (341)
T PRK12439 188 VEMAGALKNVFAIAVGMGYSLGI-GENTRAMVIARALREMTKLGVAMGGNPE 238 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999998 6899999999999999999 99999765
No 6
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=8.9e-34 Score=272.97 Aligned_cols=230 Identities=19% Similarity=0.331 Sum_probs=192.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
|||+|||+|+||+++|..|+++ | ++|++|+|++++++.++.++ ++..++++.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~-g-----~~V~l~~r~~~~~~~i~~~~----------------~~~~~~~~~------ 52 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK-K-----ISVNLWGRNHTTFESINTKR----------------KNLKYLPTC------ 52 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-C-----CeEEEEecCHHHHHHHHHcC----------------CCcccCCCC------
Confidence 6899999999999999999999 8 99999999987766543211 133334321
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCchhHHHHHHHHHh-hhhccCCCCEEEEeeecCc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISR-YWKERITVPVIISLAKGVE 201 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~-~~aDlIIlaVps~~~~~vl~~i~~-~l~~~~~~~~Ivs~~kGi~ 201 (333)
.++ .++.+++++++++ +++|+||++||+++++++++++++ ++++ ++.+++++||+.
T Consensus 53 -~~~------------------~~i~~~~~~~~~~~~~~Dliiiavks~~~~~~l~~l~~~~l~~---~~~vv~~~nGi~ 110 (326)
T PRK14620 53 -HLP------------------DNISVKSAIDEVLSDNATCIILAVPTQQLRTICQQLQDCHLKK---NTPILICSKGIE 110 (326)
T ss_pred -cCC------------------CCeEEeCCHHHHHhCCCCEEEEEeCHHHHHHHHHHHHHhcCCC---CCEEEEEEcCee
Confidence 121 2577888888776 589999999999999999999998 8776 678899999998
Q ss_pred ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecCChhHH
Q 019978 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (333)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~Di~gv 280 (333)
.. +..++++.+.+.++. .++.+++||+++.+++.+.++.+.. +.+.+..+.++++|++.+|+++.++|++|+
T Consensus 111 ~~-----~~~~~~~~l~~~~~~--~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Di~g~ 183 (326)
T PRK14620 111 KS-----SLKFPSEIVNEILPN--NPIAILSGPSFAKEIAEKLPCSIVLAGQNETLGSSLISKLSNENLKIIYSQDIIGV 183 (326)
T ss_pred CC-----CCccHHHHHHHHcCC--CceEeecCCcHHHHHHcCCCcEEEEecCCHHHHHHHHHHHCCCCeEEEecCcchhh
Confidence 76 457788999988863 4677889999999999887765554 445567899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCCCC
Q 019978 281 EVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSWQK 331 (333)
Q Consensus 281 e~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~~~ 331 (333)
+|++++||++++++|+..|+.+ +.|.++++++++++||..+ +++|+.+++
T Consensus 184 ~~~k~~~N~ia~~~g~~~g~~~-~~n~~~~l~~~~~~E~~~v~~a~G~~~~~ 234 (326)
T PRK14620 184 QIGAALKNIIAIACGIVLGKNL-GNNAHAAVITKGMNEIKTLYSAKNGSIDL 234 (326)
T ss_pred hhHHHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 9999999999999999999998 5678999999999999999 999986543
No 7
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.98 E-value=7.9e-31 Score=252.82 Aligned_cols=229 Identities=27% Similarity=0.389 Sum_probs=184.5
Q ss_pred CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
+++|||+|||+|+||+++|..|+++ | |+|++|+|++++++.++..+ .++.++++.
T Consensus 2 ~~~m~I~iIG~G~mG~~ia~~L~~~-G-----~~V~~~~r~~~~~~~i~~~~----------------~~~~~~~g~--- 56 (328)
T PRK14618 2 HHGMRVAVLGAGAWGTALAVLAASK-G-----VPVRLWARRPEFAAALAAER----------------ENREYLPGV--- 56 (328)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHHhC----------------cccccCCCC---
Confidence 4679999999999999999999999 8 99999999987665433211 122333221
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
.++ .++..+++++++++++|+||+++|+++++++++.++ + +.+++++++|+
T Consensus 57 ----~~~------------------~~~~~~~~~~e~~~~aD~Vi~~v~~~~~~~v~~~l~----~---~~~vi~~~~Gi 107 (328)
T PRK14618 57 ----ALP------------------AELYPTADPEEALAGADFAVVAVPSKALRETLAGLP----R---ALGYVSCAKGL 107 (328)
T ss_pred ----cCC------------------CCeEEeCCHHHHHcCCCEEEEECchHHHHHHHHhcC----c---CCEEEEEeecc
Confidence 111 136677888888899999999999999888886553 3 57899999999
Q ss_pred cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecCChhH
Q 019978 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (333)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~Di~g 279 (333)
.+.. .....+++++.+... ..+.++.||+++.++..+.++..+. +++++..+.++++|+..+++++.++|++|
T Consensus 108 ~~~~---~~~~~l~~~l~~~~~---~~~~~~~gP~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~~~~v~~~~di~g 181 (328)
T PRK14618 108 APDG---GRLSELARVLEFLTQ---ARVAVLSGPNHAEEIARFLPAATVVASPEPGLARRVQAAFSGPSFRVYTSRDRVG 181 (328)
T ss_pred ccCC---CccchHHHHHHHhcC---CCeEEEECccHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 8752 124456666654221 2356889999999999988766544 66778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCCC
Q 019978 280 HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSWQ 330 (333)
Q Consensus 280 ve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~~ 330 (333)
++|++++||++|+++|++.++++ ++|.+++++.++++|+..+ +++|++++
T Consensus 182 ~~~~~~lkN~~ai~~G~~~~~k~-~~n~~~~~~~~~~~E~~~la~~~G~~~~ 232 (328)
T PRK14618 182 VELGGALKNVIALAAGMVDGLKL-GDNAKAALITRGLREMVRFGVALGAEEA 232 (328)
T ss_pred hhhhHHHHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999998 6899999999999999999 99999875
No 8
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.97 E-value=8.5e-29 Score=237.09 Aligned_cols=204 Identities=26% Similarity=0.444 Sum_probs=177.8
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
..|||+|||+|+||+++|..|+++ | |+|++|+|++.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~-G-----~~V~~~~r~~~-------------------------------------- 38 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASAN-G-----HRVRVWSRRSG-------------------------------------- 38 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHC-C-----CEEEEEeCCCC--------------------------------------
Confidence 348999999999999999999999 8 99999999752
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhh-hhccCCCCEEEEeeecC
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGV 200 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~-l~~~~~~~~Ivs~~kGi 200 (333)
++++++++++|+||+++|+.+++++++++.++ +++ ++++|+++||+
T Consensus 39 ------------------------------~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~---~~ivi~~s~gi 85 (308)
T PRK14619 39 ------------------------------LSLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPP---ETIIVTATKGL 85 (308)
T ss_pred ------------------------------CCHHHHHhcCCEEEEECChHHHHHHHHHHHHhcCCC---CcEEEEeCCcc
Confidence 12335567899999999999999999999874 555 68899999999
Q ss_pred cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecCChhH
Q 019978 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (333)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~Di~g 279 (333)
.+. +...+++.+++.++. .++.+++||+++.++..+.++.++. +.+.+..+.++++|+..+++++.++|++|
T Consensus 86 ~~~-----~~~~~s~~~~~~~~~--~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~~~~~~~~d~~G 158 (308)
T PRK14619 86 DPE-----TTRTPSQIWQAAFPN--HPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSERFRVYTNSDPLG 158 (308)
T ss_pred cCC-----CCcCHHHHHHHHcCC--CceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCchh
Confidence 986 467888888877752 4677889999999999887766555 56778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCCC
Q 019978 280 HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSWQ 330 (333)
Q Consensus 280 ve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~~ 330 (333)
++||+++||++||++|+.+++.+ ++|.+++++.+++.|+..+ +++|++..
T Consensus 159 ~~~~~alkNv~ai~~G~~~~~~l-~~N~~~a~~~~~~~E~~~l~~~~G~~~~ 209 (308)
T PRK14619 159 TELGGTLKNVIAIAAGVCDGLQL-GTNAKAALVTRALPEMIRVGTHLGAQTE 209 (308)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCC-CccHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999988 6899999999999999999 99999764
No 9
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.97 E-value=1.7e-28 Score=234.70 Aligned_cols=231 Identities=24% Similarity=0.401 Sum_probs=190.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
||||+|||+|+||+++|..|+++ | ++|++|+|+++++++++.++ .++.+.++.
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~----- 53 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN-G-----HDVTLWARDPEQAAEINADR----------------ENPRYLPGI----- 53 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHHcC----------------cccccCCCC-----
Confidence 58999999999999999999999 8 99999999987765443211 011222211
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~ 202 (333)
.++ .++..+++++++++++|+||+|||+++++++++++.+++++ ++++|+++||+.+
T Consensus 54 --~~~------------------~~~~~~~~~~~~~~~~D~vi~~v~~~~~~~v~~~l~~~~~~---~~~vi~~~ngv~~ 110 (325)
T PRK00094 54 --KLP------------------DNLRATTDLAEALADADLILVAVPSQALREVLKQLKPLLPP---DAPIVWATKGIEP 110 (325)
T ss_pred --cCC------------------CCeEEeCCHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhcCC---CCEEEEEeecccC
Confidence 110 14666788888888999999999999999999999998876 7899999999998
Q ss_pred cccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecCChhHHH
Q 019978 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (333)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~Di~gve 281 (333)
+ +...+++.+++.++.. ....++.||+++.+...+.++.+.. +.+.+..++++++|+..++++..++|+.|.+
T Consensus 111 ~-----~~~~~~~~l~~~~~~~-~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~ 184 (325)
T PRK00094 111 G-----TGKLLSEVLEEELPDL-APIAVLSGPSFAKEVARGLPTAVVIASTDEELAERVQELFHSPYFRVYTNTDVIGVE 184 (325)
T ss_pred C-----CCCcHHHHHHHHcCCC-CceEEEECccHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCCEEEEecCCcchhh
Confidence 6 3567888888877531 2467889999999988887665544 5567789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCCC
Q 019978 282 VMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSWQ 330 (333)
Q Consensus 282 ~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~~ 330 (333)
|++++||++++++|+..++++ ++|...+++..+++|+..+ +++|.+++
T Consensus 185 ~~k~~~N~~~~~~g~~~~~k~-~~n~~~~~~~~~~~E~~~la~~~G~d~~ 233 (325)
T PRK00094 185 LGGALKNVIAIAAGIADGLGL-GDNARAALITRGLAEITRLGVALGANPE 233 (325)
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CccHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 999999999999999999998 6888999999999999999 99999754
No 10
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.95 E-value=5.9e-27 Score=203.81 Aligned_cols=153 Identities=32% Similarity=0.562 Sum_probs=122.0
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcCC
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (333)
||+|+|+|+||+++|..|+++ | |+|++|+|+++.++.++.++ .|+.|+++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-g-----~~V~l~~~~~~~~~~i~~~~----------------~n~~~~~~~------- 51 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-G-----HEVTLWGRDEEQIEEINETR----------------QNPKYLPGI------- 51 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-T-----EEEEEETSCHHHHHHHHHHT----------------SETTTSTTS-------
T ss_pred CEEEECcCHHHHHHHHHHHHc-C-----CEEEEEeccHHHHHHHHHhC----------------CCCCCCCCc-------
Confidence 799999999999999999999 8 99999999997776544322 466677653
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcccc
Q 019978 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAEL 204 (333)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~ 204 (333)
+++ .++.+++|++++++++|+||++||+++++++++++++++++ ++++|+++||++.+
T Consensus 52 ~l~------------------~~i~~t~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~---~~~ii~~~KG~~~~- 109 (157)
T PF01210_consen 52 KLP------------------ENIKATTDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKK---GQIIISATKGFEPG- 109 (157)
T ss_dssp BEE------------------TTEEEESSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHT---T-EEEETS-SEETT-
T ss_pred ccC------------------cccccccCHHHHhCcccEEEecccHHHHHHHHHHHhhccCC---CCEEEEecCCcccC-
Confidence 333 26889999999999999999999999999999999999987 78999999999765
Q ss_pred cCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCCh
Q 019978 205 EAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAE 254 (333)
Q Consensus 205 ~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~ 254 (333)
+..++++++++.++.+ .+++++||++|.|++.+.|+.+++ +.+.
T Consensus 110 ----~~~~~~~~i~~~~~~~--~~~~lsGP~~A~Ei~~~~pt~~~~as~~~ 154 (157)
T PF01210_consen 110 ----TLLLLSEVIEEILPIP--RIAVLSGPSFAEEIAEGKPTAVVIASKNE 154 (157)
T ss_dssp ----EEEEHHHHHHHHHSSC--GEEEEESS--HHHHHTT--EEEEEEESSH
T ss_pred ----CCccHHHHHHHHhhhc--ceEEeeCccHHHHHHcCCCeEEEEEeccc
Confidence 5789999999999753 389999999999999999988766 4443
No 11
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.86 E-value=5.8e-21 Score=180.92 Aligned_cols=223 Identities=17% Similarity=0.170 Sum_probs=162.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
|||+|||+|+||+++|..|++. | ++|++|+|++++++.++.+++ .+.+ +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~~~~g~-------------------~~~~--~---- 49 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA-G-----HDVTLVARRGAHLDALNENGL-------------------RLED--G---- 49 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECChHHHHHHHHcCC-------------------cccC--C----
Confidence 6899999999999999999998 8 999999998766554332111 1100 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~ 203 (333)
... .++..+++.++. +++|+||++||+++++++++++++++.+ ++.||+++||+...
T Consensus 50 -~~~------------------~~~~~~~~~~~~-~~~d~vila~k~~~~~~~~~~l~~~l~~---~~~iv~~~nG~~~~ 106 (304)
T PRK06522 50 -EIT------------------VPVLAADDPAEL-GPQDLVILAVKAYQLPAALPSLAPLLGP---DTPVLFLQNGVGHL 106 (304)
T ss_pred -cee------------------ecccCCCChhHc-CCCCEEEEecccccHHHHHHHHhhhcCC---CCEEEEecCCCCcH
Confidence 000 023344566554 8999999999999999999999998876 68899999998764
Q ss_pred ccCCccCCCHHHHHHhHhCCCC------CcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCCh
Q 019978 204 LEAVPRIITPTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (333)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~------~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di 277 (333)
+.+.+.++... ...+.+.+|++......+...........+..+.+.++|+..++.+..++|+
T Consensus 107 -----------~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~~~~l~~~l~~~~~~~~~~~di 175 (304)
T PRK06522 107 -----------EELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAAAEALADLLNAAGLDVEWSPDI 175 (304)
T ss_pred -----------HHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHHHHHHHHHHHhcCCCCCCChHH
Confidence 34555554211 0113467888876665443221111122244788999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCC---CCccHHHHHHHHHHHHHHH-HHCCCCCCC
Q 019978 278 VTHEVMGGLKNVYAIGAGMVAALTNE---SATSKSVYFAHCTSEMVVM-HGMGRSWQK 331 (333)
Q Consensus 278 ~gve~~~alkNv~Ai~~Gi~~gl~~~---~~n~~~~l~~~~~~E~~~l-~~~G~~~~~ 331 (333)
.+.+|.+.+.|+.....+.+.+..++ .++....++..++.|+..+ +++|.++..
T Consensus 176 ~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~ 233 (304)
T PRK06522 176 RTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLSV 233 (304)
T ss_pred HHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCCh
Confidence 99999999999877777777776652 2345679999999999999 999988753
No 12
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.82 E-value=3.5e-19 Score=169.16 Aligned_cols=222 Identities=18% Similarity=0.156 Sum_probs=153.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
|||+|||+|+||+++|..|+++ | |+|++|+| +++++.++.++ ....... ++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~-g-----~~V~~~~r-~~~~~~~~~~g-------------------~~~~~~~---~~ 51 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA-G-----RDVTFLVR-PKRAKALRERG-------------------LVIRSDH---GD 51 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-C-----CceEEEec-HHHHHHHHhCC-------------------eEEEeCC---Ce
Confidence 7999999999999999999999 8 99999999 65555432211 1111100 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~ 203 (333)
... .....++.+++.+++|+||+|+|+++++++++++++++.+ +++|++++||+...
T Consensus 52 ~~~--------------------~~~~~~~~~~~~~~~d~vilavk~~~~~~~~~~l~~~~~~---~~~ii~~~nG~~~~ 108 (305)
T PRK12921 52 AVV--------------------PGPVITDPEELTGPFDLVILAVKAYQLDAAIPDLKPLVGE---DTVIIPLQNGIGQL 108 (305)
T ss_pred EEe--------------------cceeecCHHHccCCCCEEEEEecccCHHHHHHHHHhhcCC---CCEEEEeeCCCChH
Confidence 000 2234566666668999999999999999999999998876 68899999999764
Q ss_pred ccCCccCCCHHHHHHhHhCCCCCcE------EEEcCCCchHHHhccCceeEEEe----CChhhHHHHHHHhCCCCeEEEe
Q 019978 204 LEAVPRIITPTQMINRATGVPIENI------LYLGGPNIASEIYNKEYANARIC----GAEKWRKPLAKFLRRPHFTVWD 273 (333)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~~------~vl~GP~~a~ev~~~~~~~~~~~----~~~~~~~~l~~ll~~~~~~v~~ 273 (333)
+.+.+.++....-. +.+.+|+...... +..+.++ ...+..+.+.++|...++++..
T Consensus 109 -----------~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~---~~~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~ 174 (305)
T PRK12921 109 -----------EQLEPYFGRERVLGGVVFISAQLNGDGVVVQRA---DHRLTFGEIPGQRSERTRAVRDALAGARLEVVL 174 (305)
T ss_pred -----------HHHHHhCCcccEEEEEEEEEEEECCCeEEEEcC---CCcEEEcCCCCCcCHHHHHHHHHHHhCCCCcee
Confidence 34566665321101 1222443332221 1111221 1235677899999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhccCCC---CCccHHHHHHHHHHHHHHH-HHCCCCCCC
Q 019978 274 NGDLVTHEVMGGLKNVYAIGAGMVAALTNE---SATSKSVYFAHCTSEMVVM-HGMGRSWQK 331 (333)
Q Consensus 274 s~Di~gve~~~alkNv~Ai~~Gi~~gl~~~---~~n~~~~l~~~~~~E~~~l-~~~G~~~~~ 331 (333)
++|+...+|.+.+.|..-.....+.+.+++ .++....++..+++|+..+ +++|.++..
T Consensus 175 ~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~ 236 (305)
T PRK12921 175 SENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPLRD 236 (305)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCCCh
Confidence 999999999999999755555555554431 2445679999999999999 999988753
No 13
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.79 E-value=3.1e-18 Score=165.46 Aligned_cols=223 Identities=18% Similarity=0.166 Sum_probs=153.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
+|||+|||+|+||+++|..|+++ | |+|++|+|++. .+.++.++ ....+..+ .
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~-G-----~~V~~~~r~~~-~~~~~~~g-------------------~~~~~~~~--~ 53 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA-G-----ADVTLIGRARI-GDELRAHG-------------------LTLTDYRG--R 53 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc-C-----CcEEEEecHHH-HHHHHhcC-------------------ceeecCCC--c
Confidence 47999999999999999999999 8 99999999752 23222111 01110000 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~ 202 (333)
+.... ..++.++++. +++.++|+||++||+..+.++++.+.+++++ +++|++++||+..
T Consensus 54 ~~~~~-----------------~~~~~~~~~~-~~~~~~D~vil~vk~~~~~~~~~~l~~~~~~---~~iii~~~nG~~~ 112 (341)
T PRK08229 54 DVRVP-----------------PSAIAFSTDP-AALATADLVLVTVKSAATADAAAALAGHARP---GAVVVSFQNGVRN 112 (341)
T ss_pred ceecc-----------------cceeEeccCh-hhccCCCEEEEEecCcchHHHHHHHHhhCCC---CCEEEEeCCCCCc
Confidence 00000 0135556666 4578999999999999999999999998876 7889999999886
Q ss_pred cccCCccCCCHHHHHHhHhCCCCC-----cE-EEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCC
Q 019978 203 ELEAVPRIITPTQMINRATGVPIE-----NI-LYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (333)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~-----~~-~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~D 276 (333)
. +.+++.++.... ++ ++..||.++.....+.. .+. ..+..+.++++|+..+++++.++|
T Consensus 113 ~-----------~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l---~~~-~~~~~~~~~~~l~~~g~~~~~~~d 177 (341)
T PRK08229 113 A-----------DVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGAL---AIE-ASPALRPFAAAFARAGLPLVTHED 177 (341)
T ss_pred H-----------HHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCce---Eec-CCchHHHHHHHHHhcCCCceecch
Confidence 4 345665543110 11 24568877653333321 122 234568999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCC---CCccHHHHHHHHHHHHHHH-HHCCCCCC
Q 019978 277 LVTHEVMGGLKNVYAIGAGMVAALTNE---SATSKSVYFAHCTSEMVVM-HGMGRSWQ 330 (333)
Q Consensus 277 i~gve~~~alkNv~Ai~~Gi~~gl~~~---~~n~~~~l~~~~~~E~~~l-~~~G~~~~ 330 (333)
+.+.+|.+.++|.. .+...+.+..++ .+.....++..++.|...+ ++.|.++.
T Consensus 178 i~~~~w~Kl~~N~~-~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~a~Gi~~~ 234 (341)
T PRK08229 178 MRAVQWAKLLLNLN-NAVNALSGLPLKEELAQRSYRRCLALAQREALRVLKAAGIRPA 234 (341)
T ss_pred hHHHHHHHHHHHhc-cHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999974 333333343331 1334558999999999999 99998754
No 14
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.78 E-value=4.3e-18 Score=163.39 Aligned_cols=226 Identities=16% Similarity=0.163 Sum_probs=155.5
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
..|||+|||+|+||+.+|..|+++ | ++|++|.|++. +.++.++ ..+....
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~-g-----~~V~~~~r~~~--~~~~~~g-------------------~~~~~~~--- 53 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARA-G-----FDVHFLLRSDY--EAVRENG-------------------LQVDSVH--- 53 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEEeCCH--HHHHhCC-------------------eEEEeCC---
Confidence 348999999999999999999999 8 99999999862 3222211 1111000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
++... ..+.+.++.+ ....+|+||+|||+.++.++++.+++++.+ ++.|++++||+.
T Consensus 54 ~~~~~-------------------~~~~~~~~~~-~~~~~D~vilavK~~~~~~~~~~l~~~~~~---~~~iv~lqNG~~ 110 (313)
T PRK06249 54 GDFHL-------------------PPVQAYRSAE-DMPPCDWVLVGLKTTANALLAPLIPQVAAP---DAKVLLLQNGLG 110 (313)
T ss_pred CCeee-------------------cCceEEcchh-hcCCCCEEEEEecCCChHhHHHHHhhhcCC---CCEEEEecCCCC
Confidence 00000 1244455554 367899999999999999999999999887 788999999998
Q ss_pred ccccCCccCCCHHHHHHhHhCCCCCc------EEEEcCCCchHHHhccCceeEEEeC-C-----hhhHHHHHHHhCCCCe
Q 019978 202 AELEAVPRIITPTQMINRATGVPIEN------ILYLGGPNIASEIYNKEYANARICG-A-----EKWRKPLAKFLRRPHF 269 (333)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~------~~vl~GP~~a~ev~~~~~~~~~~~~-~-----~~~~~~l~~ll~~~~~ 269 (333)
.. +.+.+.+|....- -+...+|.+......+........+ + .+..+.+.++|+..++
T Consensus 111 ~~-----------e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~ 179 (313)
T PRK06249 111 VE-----------EQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGPAADDGITARVEEGAALFRAAGI 179 (313)
T ss_pred cH-----------HHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCCCcccchHHHHHHHHHHHHHhCCC
Confidence 75 4566667532100 1233466554432223222111222 2 3456788999999999
Q ss_pred EEEecCChhHHHHHHHHHHHHHHHHHHHhccCCCC---CccHHHHHHHHHHHHHHH-HHCCCCCCC
Q 019978 270 TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNES---ATSKSVYFAHCTSEMVVM-HGMGRSWQK 331 (333)
Q Consensus 270 ~v~~s~Di~gve~~~alkNv~Ai~~Gi~~gl~~~~---~n~~~~l~~~~~~E~~~l-~~~G~~~~~ 331 (333)
.+..++|+....|.+.+.|..-.....+.+..++. +.....++.+++.|+..+ ++.|.++..
T Consensus 180 ~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~Gi~~~~ 245 (313)
T PRK06249 180 DSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVIQGAAACGHTLPE 245 (313)
T ss_pred CceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHHHHHHhcCCCCCh
Confidence 99999999999999999998555555555554421 223458999999999999 899987653
No 15
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.76 E-value=6.6e-18 Score=161.82 Aligned_cols=222 Identities=11% Similarity=0.033 Sum_probs=150.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
.|||+|+|+|++|+.+|..|++. | ++|++++|+++++++++.++ ...+... +
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~-G-----~~V~lv~r~~~~~~~i~~~~------------------Gl~i~~~----g 53 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARA-G-----LPVRLILRDRQRLAAYQQAG------------------GLTLVEQ----G 53 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEechHHHHHHhhcC------------------CeEEeeC----C
Confidence 48999999999999999999999 8 99999999877776554321 0011100 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~ 202 (333)
+ . + . .++...+. +..+.+|+||+|||++++.++++++++++.+ ++.||+++||+..
T Consensus 54 ~-~----------~--~------~~~~~~~~--~~~~~~D~viv~vK~~~~~~al~~l~~~l~~---~t~vv~lQNGv~~ 109 (305)
T PRK05708 54 Q-A----------S--L------YAIPAETA--DAAEPIHRLLLACKAYDAEPAVASLAHRLAP---GAELLLLQNGLGS 109 (305)
T ss_pred c-c----------e--e------eccCCCCc--ccccccCEEEEECCHHhHHHHHHHHHhhCCC---CCEEEEEeCCCCC
Confidence 0 0 0 0 01111111 2245789999999999999999999999987 7899999999997
Q ss_pred cccCCccCCCHHHHHHhHhCCCCCcE------EEEcCCCchHHHhccCceeEEEe-CChhhHHHHHHHhCCCCeEEEecC
Q 019978 203 ELEAVPRIITPTQMINRATGVPIENI------LYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNG 275 (333)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~~------~vl~GP~~a~ev~~~~~~~~~~~-~~~~~~~~l~~ll~~~~~~v~~s~ 275 (333)
. +.+++.++....-. +...+|........+. ..++ .+.+..+.+.++|+..++.+.+++
T Consensus 110 ~-----------e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~---~~~G~~~~~~~~~l~~~l~~ag~~~~~~~ 175 (305)
T PRK05708 110 Q-----------DAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGF---TWLGDPRNPTAPAWLDDLREAGIPHEWTV 175 (305)
T ss_pred H-----------HHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEE---EEEcCCCCcchHHHHHHHHhcCCCCccCH
Confidence 6 45666675321101 1222454433222111 1122 223567889999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCCC
Q 019978 276 DLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSWQ 330 (333)
Q Consensus 276 Di~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~~ 330 (333)
|+.+..|.+.+.|..-.....+.+..++.--....++...+.|+..+ ++.|.+..
T Consensus 176 di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~~~ 231 (305)
T PRK05708 176 DILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQPAA 231 (305)
T ss_pred HHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999998545555555555532111126788999999999 89997654
No 16
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.74 E-value=4.1e-17 Score=156.67 Aligned_cols=224 Identities=17% Similarity=0.197 Sum_probs=159.5
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
|||+|+|+|+||+.++..|++. | ++|+++.|++. +++++.++| .+.+..+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~-g-----~~V~~~~R~~~-~~~l~~~GL-------------------~i~~~~~---- 50 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA-G-----HDVTLLVRSRR-LEALKKKGL-------------------RIEDEGG---- 50 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-C-----CeEEEEecHHH-HHHHHhCCe-------------------EEecCCC----
Confidence 7999999999999999999999 8 89999999985 666554432 1111100
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~ 203 (333)
... .....+++. +....+|+||++||+.+++++++.+.+++++ ++.|++++||+...
T Consensus 51 ~~~-------------------~~~~~~~~~-~~~~~~Dlviv~vKa~q~~~al~~l~~~~~~---~t~vl~lqNG~g~~ 107 (307)
T COG1893 51 NFT-------------------TPVVAATDA-EALGPADLVIVTVKAYQLEEALPSLAPLLGP---NTVVLFLQNGLGHE 107 (307)
T ss_pred ccc-------------------cccccccCh-hhcCCCCEEEEEeccccHHHHHHHhhhcCCC---CcEEEEEeCCCcHH
Confidence 000 012223333 4466999999999999999999999999998 88999999999986
Q ss_pred ccCCccCCCHHHHHHhHhCCCC------CcEEEEcCCCchHHHhccCceeEEEe-CChhhHHHHHHHhCCCCeEEEecCC
Q 019978 204 LEAVPRIITPTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNGD 276 (333)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~------~~~~vl~GP~~a~ev~~~~~~~~~~~-~~~~~~~~l~~ll~~~~~~v~~s~D 276 (333)
|.+.+.++... ...++..||........+........ ..++..+.+.++|+..++++.+++|
T Consensus 108 -----------e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~~~~~~i~~~~~~a~~~~~~~~d 176 (307)
T COG1893 108 -----------EELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRDELVKALAELFKEAGLEVELHPD 176 (307)
T ss_pred -----------HHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCchHHHHHHHHHHHhCCCCeEEcHH
Confidence 44666554320 11235556666654443333332222 2346899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCC--Cc-cHHHHHHHHHHHHHHH-HHCCCCCCC
Q 019978 277 LVTHEVMGGLKNVYAIGAGMVAALTNES--AT-SKSVYFAHCTSEMVVM-HGMGRSWQK 331 (333)
Q Consensus 277 i~gve~~~alkNv~Ai~~Gi~~gl~~~~--~n-~~~~l~~~~~~E~~~l-~~~G~~~~~ 331 (333)
+....|-+.+.|..-.....+....++. .+ ....++.+.+.|...+ .+.|..+..
T Consensus 177 i~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~~~ 235 (307)
T COG1893 177 ILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVELPE 235 (307)
T ss_pred HHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 9999999999997444455554444322 33 3459999999999999 888866543
No 17
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.72 E-value=2.4e-16 Score=156.75 Aligned_cols=218 Identities=17% Similarity=0.186 Sum_probs=148.4
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
|||+|||+|.||..+|..|+++ | |+|++|++++++++.++ .+ ..+.+.+++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~-G-----~~V~~~d~~~~~v~~l~---------~g--------~~~~~e~~l~----- 52 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL-G-----HEVTGVDIDQEKVDKLN---------KG--------KSPIYEPGLD----- 52 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc-C-----CeEEEEECCHHHHHHhh---------cC--------CCCCCCCCHH-----
Confidence 6899999999999999999999 8 99999999998776543 11 1233333321
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------hHHHHHHHHHhhhhccCCCCEE
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI 193 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~----------~~~~vl~~i~~~l~~~~~~~~I 193 (333)
|++.+.... .+++++++++++++++|+||+|||+. .+.++++.+.+.+++ +++|
T Consensus 53 ------~~~~~~~~~-------g~l~~~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~---g~lv 116 (411)
T TIGR03026 53 ------ELLAKALAA-------GRLRATTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRK---GATV 116 (411)
T ss_pred ------HHHHHhhhc-------CCeEEECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCC---CCEE
Confidence 122111100 14778889888889999999999975 488888888888776 6666
Q ss_pred EEeeecCcccccCCccCCCH-HHHHHhHhCCC-CCcEEEEcCCCchHHHhc----cCceeEEEeCChhhHHHHHHHhCCC
Q 019978 194 ISLAKGVEAELEAVPRIITP-TQMINRATGVP-IENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKFLRRP 267 (333)
Q Consensus 194 vs~~kGi~~~~~~~~~~~~~-se~i~~~lg~~-~~~~~vl~GP~~a~ev~~----~~~~~~~~~~~~~~~~~l~~ll~~~ 267 (333)
+. ..++.+++ ...+ .+++++..|.. ...+.+.++|.++.+... ..+..++++.+++..+.++++|+..
T Consensus 117 i~-~STv~pgt-----~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~ 190 (411)
T TIGR03026 117 VL-ESTVPPGT-----TEEVVKPILERASGLKLGEDFYLAYNPEFLREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPI 190 (411)
T ss_pred EE-eCcCCCCc-----hHHHHHHHHHhhcCCCCCCCceEEECCCcCCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHh
Confidence 64 44777663 2223 23333323321 233668899999876542 2234455567778889999999876
Q ss_pred C-eEEEecCChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCC
Q 019978 268 H-FTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSW 329 (333)
Q Consensus 268 ~-~~v~~s~Di~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~ 329 (333)
+ ..++...|+...|.++.+.|.+. +.....++|+..+ +++|.++
T Consensus 191 ~~~~~~~~~~~~~Ae~~Kl~~N~~~------------------a~~ia~~nE~~~la~~~GiD~ 236 (411)
T TIGR03026 191 IEDGPVLVTSIETAEMIKLAENTFR------------------AVKIAFANELARICEALGIDV 236 (411)
T ss_pred ccCCCEEcCCHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhCCCH
Confidence 5 36677889999999999999861 1122346777777 6777654
No 18
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.69 E-value=1e-15 Score=144.67 Aligned_cols=164 Identities=16% Similarity=0.073 Sum_probs=125.4
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
+||+|||+|+||.+|+..|.++ |++.+ .+|++|+|++++++++. ++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~-g~~~~-~~I~v~~r~~~~~~~l~--------~~------------------------ 48 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK-NIVSP-DQIICSDLNVSNLKNAS--------DK------------------------ 48 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCCCC-ceEEEECCCHHHHHHHH--------Hh------------------------
Confidence 5899999999999999999988 74333 57999999876543210 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~ 203 (333)
+ .+..+++.++.+++||+||+|||++.+.++++++.+++++ ++++||+..|+..+
T Consensus 49 --~--------------------g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl~~l~~~~~~---~~lvISi~AGi~i~ 103 (272)
T PRK12491 49 --Y--------------------GITITTNNNEVANSADILILSIKPDLYSSVINQIKDQIKN---DVIVVTIAAGKSIK 103 (272)
T ss_pred --c--------------------CcEEeCCcHHHHhhCCEEEEEeChHHHHHHHHHHHHhhcC---CcEEEEeCCCCcHH
Confidence 0 2344566777788999999999999999999999998876 68999999999985
Q ss_pred ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecCChhHH
Q 019978 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (333)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~Di~gv 280 (333)
.|++.++.. .-.++.+||++..+.++...+... ..++++.+.+.++|+..|..++..++.+.+
T Consensus 104 ------------~l~~~l~~~--~~vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~~~E~~~d~ 167 (272)
T PRK12491 104 ------------STENEFDRK--LKVIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQTEVVNEKLMDV 167 (272)
T ss_pred ------------HHHHhcCCC--CcEEEECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCCEEEEcHHHhhh
Confidence 377777532 236899999999999885554321 234567899999999998877777665553
No 19
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.69 E-value=3.4e-16 Score=147.34 Aligned_cols=215 Identities=16% Similarity=0.148 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcCCcccchhhh
Q 019978 53 AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEIL 132 (333)
Q Consensus 53 ~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 132 (333)
+||+.+|..|+++ | |+|++|+|+ ++++.++.+++ .+.+..+ +...
T Consensus 1 aiG~~~a~~L~~~-G-----~~V~l~~r~-~~~~~i~~~Gl-------------------~i~~~~~---~~~~------ 45 (293)
T TIGR00745 1 AVGSLYGAYLARA-G-----HDVTLLARG-EQLEALNQEGL-------------------RIVSLGG---EFQF------ 45 (293)
T ss_pred CchHHHHHHHHhC-C-----CcEEEEecH-HHHHHHHHCCc-------------------EEEecCC---cEEE------
Confidence 5899999999999 8 999999997 45554433221 1111000 0000
Q ss_pred hccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCccCCC
Q 019978 133 KDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIIT 212 (333)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~ 212 (333)
.++.+++++++ ...+|+||+|||+++++++++.+++++.+ +++|++++||+...
T Consensus 46 -------------~~~~~~~~~~~-~~~~D~iiv~vKs~~~~~~l~~l~~~l~~---~~~iv~~qNG~g~~--------- 99 (293)
T TIGR00745 46 -------------RPVSAATSPEE-LPPADLVIITVKAYQTEEAAALLLPLIGK---NTKVLFLQNGLGHE--------- 99 (293)
T ss_pred -------------cccccccChhh-cCCCCEEEEeccchhHHHHHHHhHhhcCC---CCEEEEccCCCCCH---------
Confidence 02345566665 67899999999999999999999999987 78999999999875
Q ss_pred HHHHHHhHhCCCC------CcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCChhHHHHHHHH
Q 019978 213 PTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGL 286 (333)
Q Consensus 213 ~se~i~~~lg~~~------~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di~gve~~~al 286 (333)
+.+.+.++.+. ...+.+.+|++......+...........+..+.+.++|+..++++..++|+.+.+|.+.+
T Consensus 100 --~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~ 177 (293)
T TIGR00745 100 --ERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAELLNEAGIPAELHGDILAAIWKKLL 177 (293)
T ss_pred --HHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHHHHhCCCCCEecchHHHHHHHHHh
Confidence 45666665321 0113455776554443332211111111255788999999999999999999999999999
Q ss_pred HHH-HHHHHHHHhccCCC---CCccHHHHHHHHHHHHHHH-HHCCCCCCC
Q 019978 287 KNV-YAIGAGMVAALTNE---SATSKSVYFAHCTSEMVVM-HGMGRSWQK 331 (333)
Q Consensus 287 kNv-~Ai~~Gi~~gl~~~---~~n~~~~l~~~~~~E~~~l-~~~G~~~~~ 331 (333)
.|+ ++..+++.. ..++ .+.....++...+.|+..+ +++|.++..
T Consensus 178 ~N~~~n~l~al~~-~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~ 226 (293)
T TIGR00745 178 VNAAINPLTALLD-CKNGELLENPEARELLRRLMDEVVRVARAEGVDLPD 226 (293)
T ss_pred heechhHHHHHHC-CccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 998 444555554 3332 1223559999999999999 999987754
No 20
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.66 E-value=1.1e-14 Score=134.39 Aligned_cols=161 Identities=16% Similarity=0.157 Sum_probs=119.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC-CcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP-GRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~-~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
.+||+|||+|.||++++..+.++ |.... .++.+++|+ +++++++. .
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~-~~~~~-~~i~~~~~~~~~~~~~~~---------~---------------------- 50 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKT-SKEYI-EEIIVSNRSNVEKLDQLQ---------A---------------------- 50 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-CCCCc-CeEEEECCCCHHHHHHHH---------H----------------------
Confidence 47999999999999999999887 52110 136677764 33322110 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
. .++..++|.+++++++|+||+++|++.++++++++.++++ +++|||+++|+.
T Consensus 51 ---~--------------------~~~~~~~~~~~~~~~~DiViiavp~~~~~~v~~~l~~~~~----~~~vis~~~gi~ 103 (245)
T PRK07634 51 ---R--------------------YNVSTTTDWKQHVTSVDTIVLAMPPSAHEELLAELSPLLS----NQLVVTVAAGIG 103 (245)
T ss_pred ---H--------------------cCcEEeCChHHHHhcCCEEEEecCHHHHHHHHHHHHhhcc----CCEEEEECCCCC
Confidence 0 0234557788888999999999999999999999998765 468999999998
Q ss_pred ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecCCh
Q 019978 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (333)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~Di 277 (333)
.+ .|++.++.. ...++.||+++.++..+.+..... +.+++..+.++++|+..|-.+++.++.
T Consensus 104 ~~------------~l~~~~~~~--~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~~~~~e~~ 166 (245)
T PRK07634 104 PS------------YLEERLPKG--TPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTSQLCTEEE 166 (245)
T ss_pred HH------------HHHHHcCCC--CeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCEEEECHHH
Confidence 75 377777632 235689999999999997776543 456678899999999988777665443
No 21
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.66 E-value=4.2e-15 Score=139.59 Aligned_cols=185 Identities=22% Similarity=0.205 Sum_probs=137.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
+|||+|||+|+||.+|+..|.++ |.+.+ .+|.+.+|++++.+++. .
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~-g~~~~-~~I~v~~~~~e~~~~l~---------~----------------------- 46 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKS-GALPP-EEIIVTNRSEEKRAALA---------A----------------------- 46 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhc-CCCCc-ceEEEeCCCHHHHHHHH---------H-----------------------
Confidence 57999999999999999999998 74444 68999999887543110 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~ 202 (333)
.+ ++..+++.+++++.+|+||+|||++.+++++.++++ +.+ +++|||+..|+..
T Consensus 47 --~~--------------------g~~~~~~~~~~~~~advv~LavKPq~~~~vl~~l~~-~~~---~~lvISiaAGv~~ 100 (266)
T COG0345 47 --EY--------------------GVVTTTDNQEAVEEADVVFLAVKPQDLEEVLSKLKP-LTK---DKLVISIAAGVSI 100 (266)
T ss_pred --Hc--------------------CCcccCcHHHHHhhCCEEEEEeChHhHHHHHHHhhc-ccC---CCEEEEEeCCCCH
Confidence 01 122367777889999999999999999999999998 444 7899999999997
Q ss_pred cccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEE-EeCChhhHHHHHHHhCCCCeEEEecCChhHHH
Q 019978 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANAR-ICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (333)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~-~~~~~~~~~~l~~ll~~~~~~v~~s~Di~gve 281 (333)
+ .+++.+| . . ..++.+||++..+.++.+.+.. ...+++..+.+.++|+..|-.+++.++.+.+-
T Consensus 101 ~------------~l~~~l~-~-~-~vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~v~~v~E~~~da~ 165 (266)
T COG0345 101 E------------TLERLLG-G-L-RVVRVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGKVVEVEESLMDAV 165 (266)
T ss_pred H------------HHHHHcC-C-C-ceEEeCCChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCCeEEechHHhhHH
Confidence 5 4788887 2 2 3588999999999998665432 23456788899999999998888877766542
Q ss_pred --HHH---H--HHHHHHHH-HHHHhccCC
Q 019978 282 --VMG---G--LKNVYAIG-AGMVAALTN 302 (333)
Q Consensus 282 --~~~---a--lkNv~Ai~-~Gi~~gl~~ 302 (333)
++| + +.-+-|+. +|+-.|+..
T Consensus 166 TaisGSgPAyv~~~iEal~~agv~~Gl~~ 194 (266)
T COG0345 166 TALSGSGPAYVFLFIEALADAGVRLGLPR 194 (266)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHcCCCH
Confidence 222 2 22334554 566566654
No 22
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.63 E-value=6.1e-15 Score=139.56 Aligned_cols=164 Identities=12% Similarity=0.061 Sum_probs=122.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc-hhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS-VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~-~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
|+||+|||+|+||++++..|.++ |.+.+ ++|.+|+|+++. ++.+ .. . .
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~-g~~~~-~~V~~~~r~~~~~~~~l---------~~------------~-~------- 49 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET-EVATP-EEIILYSSSKNEHFNQL---------YD------------K-Y------- 49 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-CCCCc-ccEEEEeCCcHHHHHHH---------HH------------H-c-------
Confidence 47999999999999999999988 63333 689999987532 1110 00 0 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
..+.++.+.+++++++|+||+|+|++.+.++++++++++.+ ++.|||+++|++
T Consensus 50 ------------------------~~~~~~~~~~e~~~~aDvVilavpp~~~~~vl~~l~~~l~~---~~~ivS~~aGi~ 102 (277)
T PRK06928 50 ------------------------PTVELADNEAEIFTKCDHSFICVPPLAVLPLLKDCAPVLTP---DRHVVSIAAGVS 102 (277)
T ss_pred ------------------------CCeEEeCCHHHHHhhCCEEEEecCHHHHHHHHHHHHhhcCC---CCEEEEECCCCC
Confidence 02344567777788999999999999999999999998876 678999999999
Q ss_pred ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecCChhH
Q 019978 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (333)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~Di~g 279 (333)
.+ .|++.++. . -.++.+||++..+.++.+.+... ..+++..+.+..+|+..|..++++++.+.
T Consensus 103 ~~------------~l~~~~~~--~-~vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~~~d 166 (277)
T PRK06928 103 LD------------DLLEITPG--L-QVSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSHVMTIREENMD 166 (277)
T ss_pred HH------------HHHHHcCC--C-CEEEEeCccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCCEEEEchhhCc
Confidence 75 36777753 2 36899999999999885543221 23456788999999999888777665444
No 23
>PRK07680 late competence protein ComER; Validated
Probab=99.61 E-value=6.1e-14 Score=132.14 Aligned_cols=162 Identities=11% Similarity=0.175 Sum_probs=119.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
|||+|||+|+||++++..|.++ |.+.+ ++|.+|+|++++++++. + ..+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~-g~~~~-~~v~v~~r~~~~~~~~~---------~-------------~~~-------- 48 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES-GAVKP-SQLTITNRTPAKAYHIK---------E-------------RYP-------- 48 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC-CCCCc-ceEEEECCCHHHHHHHH---------H-------------HcC--------
Confidence 6899999999999999999988 73322 47999999876543210 0 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~ 203 (333)
.+..+.+.++++.++|+||+|+|++.+.++++++.+++.+ +++|+++++|+...
T Consensus 49 -----------------------g~~~~~~~~~~~~~aDiVilav~p~~~~~vl~~l~~~l~~---~~~iis~~ag~~~~ 102 (273)
T PRK07680 49 -----------------------GIHVAKTIEEVISQSDLIFICVKPLDIYPLLQKLAPHLTD---EHCLVSITSPISVE 102 (273)
T ss_pred -----------------------CeEEECCHHHHHHhCCEEEEecCHHHHHHHHHHHHhhcCC---CCEEEEECCCCCHH
Confidence 2445667777788999999999999999999999998876 67999999988643
Q ss_pred ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEe--CChhhHHHHHHHhCCCCeEEEecCChhHH
Q 019978 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (333)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v~~s~Di~gv 280 (333)
.+++.++. ..+...|+.+.....|.... ..+ .+++..+.+.++|+..|..+++.+|+...
T Consensus 103 ------------~L~~~~~~----~~~r~~p~~~~~~~~G~t~~-~~g~~~~~~~~~~~~~ll~~~G~~~~i~e~~~~~ 164 (273)
T PRK07680 103 ------------QLETLVPC----QVARIIPSITNRALSGASLF-TFGSRCSEEDQQKLERLFSNISTPLVIEEDITRV 164 (273)
T ss_pred ------------HHHHHcCC----CEEEECCChHHHHhhccEEE-eeCCCCCHHHHHHHHHHHHcCCCEEEEChHhcch
Confidence 36666652 24667898886665664332 222 24456789999999999888888885443
No 24
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.59 E-value=1.5e-13 Score=129.95 Aligned_cols=163 Identities=17% Similarity=0.168 Sum_probs=118.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc-chhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~-~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
.|||+|||+|+||++|+..|.++ |.+.+ ++|++|+|+.+ +++.+. . .
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~-g~~~~-~~v~v~~r~~~~~~~~l~---------~---------------~------ 50 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA-NVVKG-EQITVSNRSNETRLQELH---------Q---------------K------ 50 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-CCCCc-ceEEEECCCCHHHHHHHH---------H---------------h------
Confidence 37999999999999999999988 63333 78999999763 222110 0 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
.++..+.++.++++++|+||+|||++.+.++++++.+.+.+ +++||++++|+.
T Consensus 51 ------------------------~g~~~~~~~~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~---~~liIs~~aGi~ 103 (279)
T PRK07679 51 ------------------------YGVKGTHNKKELLTDANILFLAMKPKDVAEALIPFKEYIHN---NQLIISLLAGVS 103 (279)
T ss_pred ------------------------cCceEeCCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCC---CCEEEEECCCCC
Confidence 02445567778888999999999999999999999988766 689999999998
Q ss_pred ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEe--CChhhHHHHHHHhCCCCeEEEecCChhH
Q 019978 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (333)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v~~s~Di~g 279 (333)
.+ .+++.++.. ...+...|+++..+..+.+.. ... .+++..+.++.+|+..|-.+++.++.+.
T Consensus 104 ~~------------~l~~~~~~~--~~v~r~mPn~~~~~~~~~t~~-~~~~~~~~~~~~~v~~l~~~~G~~~~v~e~~~~ 168 (279)
T PRK07679 104 TH------------SIRNLLQKD--VPIIRAMPNTSAAILKSATAI-SPSKHATAEHIQTAKALFETIGLVSVVEEEDMH 168 (279)
T ss_pred HH------------HHHHHcCCC--CeEEEECCCHHHHHhcccEEE-eeCCCCCHHHHHHHHHHHHhCCcEEEeCHHHhh
Confidence 75 255555421 235788999988777664432 222 2345788999999998877776655444
No 25
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.58 E-value=9.4e-14 Score=130.26 Aligned_cols=155 Identities=15% Similarity=0.166 Sum_probs=115.4
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
|||+|||+|+||++++..|.++ +.+.+ .++++++|+++..
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~-~~~~~-~~i~~~~~~~~~~-------------------------------------- 43 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS-NIIGK-ENIYYHTPSKKNT-------------------------------------- 43 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC-CCCCc-ceEEEECCChhcC--------------------------------------
Confidence 7999999999999999999987 64332 3577777765321
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~ 203 (333)
.+....+..++++++|+||+|+|++.++++++++++++++ ..|||.++|+..+
T Consensus 44 -----------------------~~~~~~~~~~~~~~~D~Vilavkp~~~~~vl~~i~~~l~~----~~iIS~~aGi~~~ 96 (260)
T PTZ00431 44 -----------------------PFVYLQSNEELAKTCDIIVLAVKPDLAGKVLLEIKPYLGS----KLLISICGGLNLK 96 (260)
T ss_pred -----------------------CeEEeCChHHHHHhCCEEEEEeCHHHHHHHHHHHHhhccC----CEEEEEeCCccHH
Confidence 1123355666778999999999999999999999988764 5789999999964
Q ss_pred ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecCChhH
Q 019978 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (333)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~Di~g 279 (333)
.+++.++.. ...++.+|+++..+.++...+... ..+++..+.++++|+..|..+++.++.+.
T Consensus 97 ------------~l~~~~~~~--~~vvr~mPn~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~~~d 159 (260)
T PTZ00431 97 ------------TLEEMVGVE--AKIVRVMPNTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGIIQEIKEKDMD 159 (260)
T ss_pred ------------HHHHHcCCC--CeEEEECCCchhHhcceeEEEEeCCCCCHHHHHHHHHHHHhCCcEEEEChHHcc
Confidence 366766532 235789999998887664333211 22446789999999999998888766444
No 26
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.55 E-value=4e-13 Score=125.68 Aligned_cols=157 Identities=16% Similarity=0.115 Sum_probs=113.5
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEE-ecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW-RRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~-~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
|||+|||+|+||++|+..|.++ |++.+ .+|++| +|++++.+.+. .
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~-g~~~~-~~i~v~~~r~~~~~~~~~--------------------------~------ 46 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS-GVVPP-SRISTADDSNPARRDVFQ--------------------------S------ 46 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC-CCCCc-ceEEEEeCCCHHHHHHHH--------------------------H------
Confidence 7999999999999999999998 72222 388888 88876432210 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~ 202 (333)
..+...++.+++++++|+||+|+|++.++++++++.+.+.+ +++||++++|+..
T Consensus 47 -----------------------~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl~~l~~~~~~---~~~iIs~~~g~~~ 100 (266)
T PLN02688 47 -----------------------LGVKTAASNTEVVKSSDVIILAVKPQVVKDVLTELRPLLSK---DKLLVSVAAGITL 100 (266)
T ss_pred -----------------------cCCEEeCChHHHHhcCCEEEEEECcHHHHHHHHHHHhhcCC---CCEEEEecCCCcH
Confidence 02345567777788999999999999999999999887766 6889999988865
Q ss_pred cccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecC
Q 019978 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNG 275 (333)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~ 275 (333)
+ .+++.++.. + .+..+|+++..+..+...++.. ..+++..+.++.+|+..|-.++..+
T Consensus 101 ~------------~l~~~~~~~--~-vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~~~~~~e 159 (266)
T PLN02688 101 A------------DLQEWAGGR--R-VVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGKIWVVDE 159 (266)
T ss_pred H------------HHHHHcCCC--C-EEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCH
Confidence 4 355656532 2 3557999998776664333222 2356788999999998887334433
No 27
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.52 E-value=1e-12 Score=123.01 Aligned_cols=155 Identities=20% Similarity=0.190 Sum_probs=112.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
+|||+|||+|+||++++..|.++ |. .. ++|.+|+|++++++++.. .+
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~-g~-~~-~~v~v~~r~~~~~~~~~~----------------------~~-------- 48 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS-GV-PA-KDIIVSDPSPEKRAALAE----------------------EY-------- 48 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC-CC-Cc-ceEEEEcCCHHHHHHHHH----------------------hc--------
Confidence 58999999999999999999987 62 22 579999999865432110 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~ 202 (333)
.+.++++.++.+.++|+||+|+|++.+.++++++.+++ + +.||++++|+..
T Consensus 49 ------------------------g~~~~~~~~~~~~~advVil~v~~~~~~~v~~~l~~~~-~----~~vvs~~~gi~~ 99 (267)
T PRK11880 49 ------------------------GVRAATDNQEAAQEADVVVLAVKPQVMEEVLSELKGQL-D----KLVVSIAAGVTL 99 (267)
T ss_pred ------------------------CCeecCChHHHHhcCCEEEEEcCHHHHHHHHHHHHhhc-C----CEEEEecCCCCH
Confidence 12344566677889999999999999999999998876 3 589999999865
Q ss_pred cccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEe--CChhhHHHHHHHhCCCCeEEEec
Q 019978 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDN 274 (333)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v~~s 274 (333)
+ .+++.++.. . -.+...|+++..+..+... ++.. .+++..+.++.+|+..|..+++.
T Consensus 100 ~------------~l~~~~~~~-~-~iv~~~P~~p~~~~~~~~~-i~~~~~~~~~~~~~v~~l~~~lG~~~~~~ 158 (267)
T PRK11880 100 A------------RLERLLGAD-L-PVVRAMPNTPALVGAGMTA-LTANALVSAEDRELVENLLSAFGKVVWVD 158 (267)
T ss_pred H------------HHHHhcCCC-C-cEEEecCCchHHHcCceEE-EecCCCCCHHHHHHHHHHHHhCCeEEEEC
Confidence 3 466666522 2 2466889998776665332 2222 35667889999999988766665
No 28
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.50 E-value=9.8e-13 Score=120.24 Aligned_cols=179 Identities=19% Similarity=0.202 Sum_probs=120.7
Q ss_pred ceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 44 ~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
|||+||| +|+||++++..|+++ | |+|++|+|++++++.+..+.+ ..+..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~-G-----~~V~v~~r~~~~~~~l~~~~~------------------~~~~~------ 50 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA-G-----NKIIIGSRDLEKAEEAAAKAL------------------EELGH------ 50 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC-C-----CEEEEEEcCHHHHHHHHHHHH------------------hhccc------
Confidence 7999997 899999999999999 8 999999999877654321110 00110
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~ 202 (333)
.|+. ..+.. ++..++++++|+||+|||++.+.++++++.+.+. +++||+++||+..
T Consensus 51 -----------~g~~--------~~~~~-~~~~ea~~~aDvVilavp~~~~~~~l~~l~~~l~----~~vvI~~~ngi~~ 106 (219)
T TIGR01915 51 -----------GGSD--------IKVTG-ADNAEAAKRADVVILAVPWDHVLKTLESLRDELS----GKLVISPVVPLAS 106 (219)
T ss_pred -----------cCCC--------ceEEE-eChHHHHhcCCEEEEECCHHHHHHHHHHHHHhcc----CCEEEEeccCcee
Confidence 0000 02233 3456778899999999999999999999987665 4789999999986
Q ss_pred cc-c----CCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCc----eeEEEeCC-hhhHHHHHHHhCCC-CeEE
Q 019978 203 EL-E----AVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEY----ANARICGA-EKWRKPLAKFLRRP-HFTV 271 (333)
Q Consensus 203 ~~-~----~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~----~~~~~~~~-~~~~~~l~~ll~~~-~~~v 271 (333)
.. . ..+.....++.+++.++.. .-.+...|+.+.++..+.. ..+.++++ ++..+.+.++.+.. ||+.
T Consensus 107 ~~~~~~~~~~~~~~s~~e~l~~~~p~~--~~VVka~~~~~a~~~~~~~~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~ 184 (219)
T TIGR01915 107 DGGKGARYLPPEEGSAAEQAAALLPET--SRVVAAFHNLSAVLLQDVDDEVDCDVLVCGDDEEAKEVVAELAGRIDGLRA 184 (219)
T ss_pred cCCCCceecCCCCCcHHHHHHHhCCCC--CeEeeccccCCHHHhcCCCCCCCCCEEEECCCHHHHHHHHHHHHhcCCCCc
Confidence 20 0 0111234568888888631 2346677888777665421 22345665 45677888888887 8987
Q ss_pred EecCChh
Q 019978 272 WDNGDLV 278 (333)
Q Consensus 272 ~~s~Di~ 278 (333)
.....+.
T Consensus 185 vd~G~l~ 191 (219)
T TIGR01915 185 LDAGPLE 191 (219)
T ss_pred ccCCchh
Confidence 6544433
No 29
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.45 E-value=4.8e-13 Score=106.05 Aligned_cols=94 Identities=27% Similarity=0.321 Sum_probs=71.7
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEE-ecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW-RRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~-~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
||+|||+|+||++|+..|.++ |. .+ ++|.++ +|++++++++.. .
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-g~-~~-~~v~~~~~r~~~~~~~~~~-------------------------~------- 45 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-GI-KP-HEVIIVSSRSPEKAAELAK-------------------------E------- 45 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-TS--G-GEEEEEEESSHHHHHHHHH-------------------------H-------
T ss_pred CEEEECCCHHHHHHHHHHHHC-CC-Cc-eeEEeeccCcHHHHHHHHH-------------------------h-------
Confidence 799999999999999999998 74 33 789966 999876543210 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEec-CHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVT-NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~-d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG 199 (333)
+ .+.+.. +..++++.+|+||+|||++.+.++++++ +...+ ++.+||+++|
T Consensus 46 --~--------------------~~~~~~~~~~~~~~~advvilav~p~~~~~v~~~i-~~~~~---~~~vis~~ag 96 (96)
T PF03807_consen 46 --Y--------------------GVQATADDNEEAAQEADVVILAVKPQQLPEVLSEI-PHLLK---GKLVISIAAG 96 (96)
T ss_dssp --C--------------------TTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHHHH-HHHHT---TSEEEEESTT
T ss_pred --h--------------------ccccccCChHHhhccCCEEEEEECHHHHHHHHHHH-hhccC---CCEEEEeCCC
Confidence 0 223333 6788899999999999999999999999 55555 7899999876
No 30
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.42 E-value=3.6e-12 Score=121.14 Aligned_cols=201 Identities=15% Similarity=0.110 Sum_probs=124.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
+.||+|||+|.||+++|..|+.+ | ++|++|+++++.+++.... +.+....+++...... ....
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~l~~~~~~-----i~~~~~~l~~~~~~g~-~~~~----- 65 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFART-G-----YDVTIVDVSEEILKNAMEL-----IESGPYGLRNLVEKGK-MSED----- 65 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHHH-----HHhhhhhHHHHHHcCC-CCHH-----
Confidence 46899999999999999999999 8 9999999999876543211 1110000000000000 0000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~--~~~vl~~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
.. ++ .+.++.++++. ++++++|+||+|+|++. ..++++++.+++++ +++++|.++|+
T Consensus 66 --~~--~~-------------~~~~i~~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~---~~il~S~tsg~ 124 (291)
T PRK06035 66 --EA--KA-------------IMARIRTSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSP---ETIIASNTSGI 124 (291)
T ss_pred --HH--HH-------------HHhCcEeeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCC---CeEEEEcCCCC
Confidence 00 00 01256677777 46899999999999885 89999999998887 78888889887
Q ss_pred cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE--eCChhhHHHHHHHhCCCCeEEEecCChh
Q 019978 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (333)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~v~~s~Di~ 278 (333)
... .+.+.+..+ ..+ +-..|..+..+... ..++. ..+++..+.+..++...+..+....|.-
T Consensus 125 ~~~------------~la~~~~~~-~r~-ig~hf~~P~~~~~~--vEv~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~p 188 (291)
T PRK06035 125 MIA------------EIATALERK-DRF-IGMHWFNPAPVMKL--IEVVRAALTSEETFNTTVELSKKIGKIPIEVADVP 188 (291)
T ss_pred CHH------------HHHhhcCCc-ccE-EEEecCCCcccCcc--EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCC
Confidence 754 245555432 111 22223332211111 11111 2256778888889988887777667877
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019978 279 THEVMGGLKNVYAIGAGMV 297 (333)
Q Consensus 279 gve~~~alkNv~Ai~~Gi~ 297 (333)
|--....+.|.+.-+.-++
T Consensus 189 gfv~nRl~~~~~~ea~~~~ 207 (291)
T PRK06035 189 GFFTTRFIEGWLLEAIRSF 207 (291)
T ss_pred CeeHHHHHHHHHHHHHHHH
Confidence 7666666666666555444
No 31
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.42 E-value=6.3e-12 Score=120.34 Aligned_cols=181 Identities=16% Similarity=0.180 Sum_probs=116.8
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
.++||+|||+|.||+++|..|+++ | ++|++|+++++.+++++.. +.... +...+.
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~-g-----~~V~~~d~~~~~~~~~~~~-----~~~~~---------~~~~~~----- 57 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARK-G-----LQVVLIDVMEGALERARGV-----IERAL---------GVYAPL----- 57 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHHH-----HHHHH---------HHhhhc-----
Confidence 357999999999999999999998 8 9999999998876654321 00000 000000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKG 199 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~--~~~vl~~i~~~l~~~~~~~~Ivs~~kG 199 (333)
... ...+.++.++++++++++++|+||+|||++. ...+++++.+++++ +++|+|.+.|
T Consensus 58 ---~~~--------------~~~~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~---~~ii~s~tsg 117 (311)
T PRK06130 58 ---GIA--------------SAGMGRIRMEAGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDP---DTIFATNTSG 117 (311)
T ss_pred ---ccH--------------HHHhhceEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHHhCCC---CcEEEECCCC
Confidence 000 0000146777888888899999999999874 88899999988776 6777788888
Q ss_pred CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEe--CChhhHHHHHHHhCCCCeEEEe-cCC
Q 019978 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWD-NGD 276 (333)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v~~-s~D 276 (333)
+... .+++.++.+ .. .+...|+.+..... ...++.+ .+++..+.+..+|+..+..+.. ..|
T Consensus 118 ~~~~------------~l~~~~~~~-~~-~ig~h~~~p~~~~~--l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d 181 (311)
T PRK06130 118 LPIT------------AIAQAVTRP-ER-FVGTHFFTPADVIP--LVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKD 181 (311)
T ss_pred CCHH------------HHHhhcCCc-cc-EEEEccCCCCccCc--eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 7643 255555432 11 23345555543222 1212222 2467889999999988876554 457
Q ss_pred hhHHHHH
Q 019978 277 LVTHEVM 283 (333)
Q Consensus 277 i~gve~~ 283 (333)
.-|.-+.
T Consensus 182 ~~G~i~n 188 (311)
T PRK06130 182 IPGFIAN 188 (311)
T ss_pred CCCcHHH
Confidence 7665333
No 32
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.42 E-value=5.3e-12 Score=120.66 Aligned_cols=183 Identities=12% Similarity=0.097 Sum_probs=113.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
|||+|||+|.||+++|..|+++ | ++|.+|+|++++++++..++ ..
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~-g-----~~V~~~dr~~~~~~~l~~~g---------------------~~-------- 45 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR-G-----HDCVGYDHDQDAVKAMKEDR---------------------TT-------- 45 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHHcC---------------------Cc--------
Confidence 6899999999999999999999 8 99999999987654322100 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~ 203 (333)
......++.+.+..+|+||+++|+..++++++++.+.+++ +++||.++++....
T Consensus 46 -----------------------~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l~~~l~~---g~ivid~st~~~~~ 99 (298)
T TIGR00872 46 -----------------------GVANLRELSQRLSAPRVVWVMVPHGIVDAVLEELAPTLEK---GDIVIDGGNSYYKD 99 (298)
T ss_pred -----------------------ccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHHHhhCCC---CCEEEECCCCCccc
Confidence 0000122333456789999999999999999999998876 67888888776554
Q ss_pred ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchH-HHhccCceeEEEeCChhhHHHHHHHhCCCCe---EEEecCChhH
Q 019978 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIAS-EIYNKEYANARICGAEKWRKPLAKFLRRPHF---TVWDNGDLVT 279 (333)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~-ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~---~v~~s~Di~g 279 (333)
+ .+ ..+.+++ .| +.++..|.... ...+..+ ..+++++++..+.++.+|+..+- .+.+..+.=.
T Consensus 100 t-----~~-~~~~~~~-~g-----~~~vda~vsGg~~~a~~G~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~ 166 (298)
T TIGR00872 100 S-----LR-RYKLLKE-KG-----IHLLDCGTSGGVWGRERGY-CFMIGGDGEAFARAEPLFADVAPEEQGYLYCGPCGS 166 (298)
T ss_pred H-----HH-HHHHHHh-cC-----CeEEecCCCCCHHHHhcCC-eeeeCCCHHHHHHHHHHHHHhcCcCCCEEEECCccH
Confidence 2 11 1111211 12 12233333211 1122223 34567777788888888775432 2344444433
Q ss_pred HHHHHHHHHHH--HHHHHHHhcc
Q 019978 280 HEVMGGLKNVY--AIGAGMVAAL 300 (333)
Q Consensus 280 ve~~~alkNv~--Ai~~Gi~~gl 300 (333)
....+.+.|.+ +..+.+++++
T Consensus 167 ~~~~K~~~n~l~~~~~~~~aE~~ 189 (298)
T TIGR00872 167 GHFVKMVHNGIEYGMMAAIAEGF 189 (298)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777752 3335555544
No 33
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.41 E-value=4.8e-12 Score=123.55 Aligned_cols=193 Identities=19% Similarity=0.158 Sum_probs=134.5
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
|||+|+|+|++|...|.+|++. | |+|+.+|.++++++.++ .+ +-|.|.|+++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~-G-----HeVv~vDid~~KV~~ln---------~g--------~~PI~EpgLe----- 52 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL-G-----HEVVCVDIDESKVELLN---------KG--------ISPIYEPGLE----- 52 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc-C-----CeEEEEeCCHHHHHHHh---------CC--------CCCCcCccHH-----
Confidence 8999999999999999999999 8 99999999999887543 33 2477888765
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------hhHHHHHHHHHhhhhccCCCCEE
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------TETKEVFEEISRYWKERITVPVI 193 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps----------~~~~~vl~~i~~~l~~~~~~~~I 193 (333)
|+|.++... .++.+|+|.+++++++|++|+|||. .++++++++|.+++++ .+ +
T Consensus 53 ------~ll~~~~~~-------gRl~fTtd~~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~---~~-v 115 (414)
T COG1004 53 ------ELLKENLAS-------GRLRFTTDYEEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDG---KA-V 115 (414)
T ss_pred ------HHHHhcccc-------CcEEEEcCHHHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCC---Ce-E
Confidence 344432211 2599999999999999999999975 2689999999998875 33 3
Q ss_pred EEeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhcc----CceeEEEeC-ChhhHHHHHHHhCCC-
Q 019978 194 ISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNK----EYANARICG-AEKWRKPLAKFLRRP- 267 (333)
Q Consensus 194 vs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~----~~~~~~~~~-~~~~~~~l~~ll~~~- 267 (333)
|..-+.++++ +...+.+.+.+.... ..+.+.+-|.|-+|...- .|.-++++. ++...+.+.+++...
T Consensus 116 vV~KSTVPvG-----t~~~v~~~i~~~~~~--~~f~v~~NPEFLREG~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~ 188 (414)
T COG1004 116 VVIKSTVPVG-----TTEEVRAKIREENSG--KDFEVASNPEFLREGSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFL 188 (414)
T ss_pred EEEcCCCCCC-----chHHHHHHHHhhccc--CCceEecChHHhcCcchhhhccCCCeEEEccCChhHHHHHHHHHhhhh
Confidence 3333334444 344444444443322 257799999998876542 244455544 334577777777542
Q ss_pred --CeEEEecCChhHHHHHHHHHHH
Q 019978 268 --HFTVWDNGDLVTHEVMGGLKNV 289 (333)
Q Consensus 268 --~~~v~~s~Di~gve~~~alkNv 289 (333)
..++ ...|+..+|+-+..-|.
T Consensus 189 ~~~~p~-l~t~~~~AE~IKyaaNa 211 (414)
T COG1004 189 RQDVPI-LFTDLREAELIKYAANA 211 (414)
T ss_pred hcCCCE-EEecchHHHHHHHHHHH
Confidence 3333 57788888876655553
No 34
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.40 E-value=1.1e-12 Score=114.60 Aligned_cols=152 Identities=20% Similarity=0.260 Sum_probs=98.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
||||+|||.|.||+.||..|.++ | ++|++|+|++++++++..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~-g-----~~v~~~d~~~~~~~~~~~-------------------------------- 42 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA-G-----YEVTVYDRSPEKAEALAE-------------------------------- 42 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT-T-----TEEEEEESSHHHHHHHHH--------------------------------
T ss_pred CCEEEEEchHHHHHHHHHHHHhc-C-----CeEEeeccchhhhhhhHH--------------------------------
Confidence 68999999999999999999999 8 999999999876543210
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-hhHHHHHHH--HHhhhhccCCCCEEEEeeec
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEE--ISRYWKERITVPVIISLAKG 199 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps-~~~~~vl~~--i~~~l~~~~~~~~Ivs~~kG 199 (333)
......++++++++.+|+||+++|. ..+++++.. +.+.+.+ ++++|.++ .
T Consensus 43 -----------------------~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~---g~iiid~s-T 95 (163)
T PF03446_consen 43 -----------------------AGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENILAGLRP---GKIIIDMS-T 95 (163)
T ss_dssp -----------------------TTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHGGGS-T---TEEEEE-S-S
T ss_pred -----------------------hhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHhhcccc---ceEEEecC-C
Confidence 0355678899999999999999998 679999999 8887776 67777654 2
Q ss_pred CcccccCCccCCCHHHHHHhHh---CCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEE
Q 019978 200 VEAELEAVPRIITPTQMINRAT---GVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVW 272 (333)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~l---g~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~ 272 (333)
+.+++ ++.+.+.+ |.......+..||.-+ ..+..+ .+++++++..++++.+|+..+-+++
T Consensus 96 ~~p~~---------~~~~~~~~~~~g~~~vdapV~Gg~~~a---~~g~l~-~~~gG~~~~~~~~~~~l~~~~~~v~ 158 (163)
T PF03446_consen 96 ISPET---------SRELAERLAAKGVRYVDAPVSGGPPGA---EEGTLT-IMVGGDEEAFERVRPLLEAMGKNVY 158 (163)
T ss_dssp --HHH---------HHHHHHHHHHTTEEEEEEEEESHHHHH---HHTTEE-EEEES-HHHHHHHHHHHHHHEEEEE
T ss_pred cchhh---------hhhhhhhhhhccceeeeeeeecccccc---cccceE-EEccCCHHHHHHHHHHHHHHhCCce
Confidence 33321 12233333 2111112233444322 233223 4567888888899998886555554
No 35
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.40 E-value=1.2e-11 Score=123.49 Aligned_cols=192 Identities=14% Similarity=-0.006 Sum_probs=120.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
+|||+|||+|.||..+|..|++. | |+|++|++++++++.++. +. -+.+.+++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~-G-----~~V~~~D~~~~~v~~l~~---------g~--------~~~~e~~l~---- 55 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR-Q-----KQVIGVDINQHAVDTINR---------GE--------IHIVEPDLD---- 55 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC-C-----CEEEEEeCCHHHHHHHHC---------CC--------CCcCCCCHH----
Confidence 48999999999999999999999 8 999999999987765432 11 112222221
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------hhHHHHHHHHHhhhhccCCCCE
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------TETKEVFEEISRYWKERITVPV 192 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps----------~~~~~vl~~i~~~l~~~~~~~~ 192 (333)
|++.+.... ..+.++++. ++||+||+|||. ..+.++++.+.+++++ +++
T Consensus 56 -------~~l~~~~~~-------g~l~~~~~~----~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~---g~i 114 (415)
T PRK11064 56 -------MVVKTAVEG-------GYLRATTTP----EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKK---GDL 114 (415)
T ss_pred -------HHHHHHhhc-------Cceeeeccc----ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCC---CCE
Confidence 121111000 135555543 479999999997 5888899999998876 665
Q ss_pred EEEeeecCcccccCCccCCCHHHHHHhHhCC--------CCCcEEEEcCCCchHHHhc----cCceeEEEeC-ChhhHHH
Q 019978 193 IISLAKGVEAELEAVPRIITPTQMINRATGV--------PIENILYLGGPNIASEIYN----KEYANARICG-AEKWRKP 259 (333)
Q Consensus 193 Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~--------~~~~~~vl~GP~~a~ev~~----~~~~~~~~~~-~~~~~~~ 259 (333)
|| ....+.+++ .+.+...+.+.-.. ....+.+...|.+..+... ..+..+ +++ +++..++
T Consensus 115 VI-~~STv~pgt-----t~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~~G~~~~~~~~~~~v-vgG~~~~~~~~ 187 (415)
T PRK11064 115 VI-LESTSPVGA-----TEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLPGQVMVELIKNDRV-IGGMTPVCSAR 187 (415)
T ss_pred EE-EeCCCCCCH-----HHHHHHHHHHhccCCcccccccCCCCeEEEECCCccCCCChhhhhcCCCEE-EEeCCHHHHHH
Confidence 54 344555542 23333334332100 0123556778866543221 123333 344 6777888
Q ss_pred HHHHhCCCCeEEEecCChhHHHHHHHHHHH
Q 019978 260 LAKFLRRPHFTVWDNGDLVTHEVMGGLKNV 289 (333)
Q Consensus 260 l~~ll~~~~~~v~~s~Di~gve~~~alkNv 289 (333)
++.+|+.-.-.+....++...|..+..-|.
T Consensus 188 ~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~ 217 (415)
T PRK11064 188 ASELYKIFLEGECVVTNSRTAEMCKLTENS 217 (415)
T ss_pred HHHHHHHhcCCCeeeCCHHHHHHHHHHHHH
Confidence 888887654344456688888999888876
No 36
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.38 E-value=2.5e-11 Score=120.22 Aligned_cols=184 Identities=15% Similarity=0.116 Sum_probs=116.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
|||+|||+|.||..+|..++ . | |+|++|+++++++++++. +. -+.+.+++.
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~-G-----~~VigvD~d~~kv~~l~~---------g~--------~~~~e~~l~----- 51 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-Q-N-----HEVVALDILPSRVAMLND---------RI--------SPIVDKEIQ----- 51 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-h-C-----CcEEEEECCHHHHHHHHc---------CC--------CCCCCcCHH-----
Confidence 69999999999999998887 5 6 999999999988765432 11 112222221
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-----------hHHHHHHHHHhhhhccCCCCE
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-----------ETKEVFEEISRYWKERITVPV 192 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-----------~~~~vl~~i~~~l~~~~~~~~ 192 (333)
|++.++ ..++..+++..+++.++|+||+|||.. +++++++.+.+ +++ +++
T Consensus 52 ------~~l~~~---------~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~---g~l 112 (388)
T PRK15057 52 ------QFLQSD---------KIHFNATLDKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INP---YAV 112 (388)
T ss_pred ------HHHHhC---------CCcEEEecchhhhhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCC---CCE
Confidence 111110 014666777778889999999999964 67888888877 554 555
Q ss_pred EEEeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhc----cCceeEEEeCChhhHHHHHHHhCCCC
Q 019978 193 IISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKFLRRPH 268 (333)
Q Consensus 193 Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~----~~~~~~~~~~~~~~~~~l~~ll~~~~ 268 (333)
|| ....+++++ . +.+.+.+.. ..+.+.|.++.+... ..|..++++++++..+++.++|....
T Consensus 113 VV-~~STv~pgt-----t----~~l~~~~~~----~~v~~~PE~l~~G~a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~ 178 (388)
T PRK15057 113 MV-IKSTVPVGF-----T----AAMHKKYRT----ENIIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGA 178 (388)
T ss_pred EE-EeeecCCch-----H----HHHHHHhhc----CcEEECcccccCCcccccccCCCEEEEEcCcHHHHHHHHHHHhhh
Confidence 54 344455542 1 223333311 135568988865432 11334455666666777777775421
Q ss_pred e--EEE-ecCChhHHHHHHHHHHH
Q 019978 269 F--TVW-DNGDLVTHEVMGGLKNV 289 (333)
Q Consensus 269 ~--~v~-~s~Di~gve~~~alkNv 289 (333)
+ .+. +..|+...|..+..-|.
T Consensus 179 ~~~~~~~~~~~~~~AE~~Kl~~N~ 202 (388)
T PRK15057 179 IKQNIPTLFTDSTEAEAIKLFANT 202 (388)
T ss_pred hcCCCceeeCCHHHHHHHHHHHHH
Confidence 1 222 46888889999988886
No 37
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.38 E-value=1.1e-11 Score=118.47 Aligned_cols=179 Identities=13% Similarity=0.141 Sum_probs=116.1
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
|||+|||+|.||..+|..|.+. | ++|++|+|++++++++. +
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~-g-----~~v~v~dr~~~~~~~~~---------~------------------------ 41 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED-G-----HEVVGYDVNQEAVDVAG---------K------------------------ 41 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHH---------H------------------------
Confidence 6899999999999999999999 8 89999999986544211 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCch-hHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~---aDlIIlaVps~-~~~~vl~~i~~~l~~~~~~~~Ivs~~kG 199 (333)
.......+++++++. +|+||+++|.. .++++++.+.+.+++ ++++|.++..
T Consensus 42 ----------------------~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i~~~l~~---g~ivid~st~ 96 (299)
T PRK12490 42 ----------------------LGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDLYPLLSP---GDIVVDGGNS 96 (299)
T ss_pred ----------------------CCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHHhccCCC---CCEEEECCCC
Confidence 012344567776655 69999999998 899999998887766 6788877643
Q ss_pred CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH--HhccCceeEEEeCChhhHHHHHHHhCCCCe---EEEec
Q 019978 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--IYNKEYANARICGAEKWRKPLAKFLRRPHF---TVWDN 274 (333)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e--v~~~~~~~~~~~~~~~~~~~l~~ll~~~~~---~v~~s 274 (333)
-... ...+.+.+.+ .+ +.++-.|..... ...+. .++++++++..++++.+|+..+- +++..
T Consensus 97 ~~~~------~~~~~~~~~~-~g-----~~~vdapV~G~~~~a~~g~--~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~ 162 (299)
T PRK12490 97 RYKD------DLRRAEELAE-RG-----IHYVDCGTSGGVWGLRNGY--CLMVGGDKEIYDRLEPVFKALAPEGPGYVHA 162 (299)
T ss_pred Cchh------HHHHHHHHHH-cC-----CeEEeCCCCCCHHHHhcCC--eEEecCCHHHHHHHHHHHHHhcCcCCcEEEE
Confidence 3322 1112222221 12 223444444321 12342 34567888888888888887654 45555
Q ss_pred CChhHHHHHHHHHHHHHH--HHHHHhcc
Q 019978 275 GDLVTHEVMGGLKNVYAI--GAGMVAAL 300 (333)
Q Consensus 275 ~Di~gve~~~alkNv~Ai--~~Gi~~gl 300 (333)
.++-.....+.+.|.+.. ..++.+++
T Consensus 163 G~~g~a~~~Kl~~n~~~~~~~~~~aEa~ 190 (299)
T PRK12490 163 GPVGSGHFLKMVHNGIEYGMMQAYAEGL 190 (299)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555677777776333 35555544
No 38
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.37 E-value=1.1e-11 Score=118.42 Aligned_cols=170 Identities=14% Similarity=0.104 Sum_probs=109.1
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
+||+|||+|.||.++|..|+++ | ++|++|+|++++++++...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~-G-----~~V~v~d~~~~~~~~~~~~-------------------------------- 43 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQ-G-----HQLQVFDVNPQAVDALVDK-------------------------------- 43 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHHc--------------------------------
Confidence 5999999999999999999999 8 9999999998765432100
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHH---HHhhhhccCCCCEEEEeeec
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE---ISRYWKERITVPVIISLAKG 199 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~~---i~~~l~~~~~~~~Ivs~~kG 199 (333)
.....+++.++++++|+||+++|+. .+++++.. +.+.+++ ++++|.++.+
T Consensus 44 -----------------------g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~---g~lvid~sT~ 97 (296)
T PRK15461 44 -----------------------GATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSR---DALVIDMSTI 97 (296)
T ss_pred -----------------------CCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCC---CCEEEECCCC
Confidence 1223456777889999999999997 47878743 4444554 6777777655
Q ss_pred CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH--HhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCCh
Q 019978 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--IYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (333)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e--v~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di 277 (333)
-+.. ++.+.+.+.. ..+.++-.|..... ...+..+ ++.+++++..++++.+|+..+-++++..+.
T Consensus 98 ~p~~----------~~~l~~~l~~--~g~~~ldapV~g~~~~a~~g~l~-~~~gg~~~~~~~~~p~l~~~g~~~~~~g~~ 164 (296)
T PRK15461 98 HPLQ----------TDKLIADMQA--KGFSMMDVPVGRTSDNAITGTLL-LLAGGTAEQVERATPILMAMGNELINAGGP 164 (296)
T ss_pred CHHH----------HHHHHHHHHH--cCCcEEEccCCCCHHHHHhCcEE-EEECCCHHHHHHHHHHHHHHcCCeEeeCCC
Confidence 4432 1223222211 11123333433221 1233233 345677788889999998777677777776
Q ss_pred hHHHHHHHHHHHH
Q 019978 278 VTHEVMGGLKNVY 290 (333)
Q Consensus 278 ~gve~~~alkNv~ 290 (333)
=.....+...|.+
T Consensus 165 G~g~~~Kl~~N~~ 177 (296)
T PRK15461 165 GMGIRVKLINNYM 177 (296)
T ss_pred CHHHHHHHHHHHH
Confidence 4445666666653
No 39
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.36 E-value=1.6e-11 Score=116.19 Aligned_cols=180 Identities=17% Similarity=0.157 Sum_probs=117.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhccc-ccchhhhhh
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCA-YLKYVEARL 121 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~-~l~~~~~~~ 121 (333)
++||+|||+|.||..+|..++.. | ++|++|+++++.+++... .+++. ++++..... ......
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~-g-----~~V~~~d~~~~~~~~~~~-----~i~~~---l~~~~~~g~~~~~~~~--- 65 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA-G-----YDVVMVDISDAAVDRGLA-----TITKS---LDRLVKKGKMTEADKE--- 65 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC-C-----CceEEEeCCHHHHHHHHH-----HHHHH---HHHHHHcCCCCHHHHH---
Confidence 46899999999999999999999 8 899999999987643211 11111 111111110 000000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKG 199 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~--~~~vl~~i~~~l~~~~~~~~Ivs~~kG 199 (333)
..+.++++++|.++ +++||+||+|+|++. ..++++++.+++++ +++++|.+.|
T Consensus 66 ---------------------~~~~~l~~~~~~~~-~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~---~~il~s~ts~ 120 (282)
T PRK05808 66 ---------------------AALARITGTTDLDD-LKDADLVIEAATENMDLKKKIFAQLDEIAKP---EAILATNTSS 120 (282)
T ss_pred ---------------------HHHhCeEEeCCHHH-hccCCeeeecccccHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 00125777888764 789999999999754 47999999999987 7888888888
Q ss_pred CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE--eCChhhHHHHHHHhCCCCeEEEecCCh
Q 019978 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (333)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~v~~s~Di 277 (333)
+... .+++.++.+. -.+...|..+..+.... . ++. ..+++..+.+..+|...|..+....|.
T Consensus 121 ~~~~------------~la~~~~~~~--r~ig~h~~~P~~~~~~v-e-v~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~ 184 (282)
T PRK05808 121 LSIT------------ELAAATKRPD--KVIGMHFFNPVPVMKLV-E-IIRGLATSDATHEAVEALAKKIGKTPVEVKNA 184 (282)
T ss_pred CCHH------------HHHHhhCCCc--ceEEeeccCCcccCccE-E-EeCCCCCCHHHHHHHHHHHHHcCCeeEEecCc
Confidence 7764 3566665432 23455666655443332 1 221 345678889999999888777655565
Q ss_pred hHH
Q 019978 278 VTH 280 (333)
Q Consensus 278 ~gv 280 (333)
-|-
T Consensus 185 ~g~ 187 (282)
T PRK05808 185 PGF 187 (282)
T ss_pred cCh
Confidence 553
No 40
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.36 E-value=2.1e-11 Score=115.84 Aligned_cols=182 Identities=19% Similarity=0.226 Sum_probs=108.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
++||+|||+|.||+++|..|+.+ | ++|++|+++++.+++++.. +... + ..+.+..
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~l~~~~~~-----~~~~---~------~~~~~~~----- 57 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH-G-----FDVTIYDISDEALEKAKER-----IAKL---A------DRYVRDL----- 57 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHHH-----HHHH---H------HHHHHcC-----
Confidence 47999999999999999999999 8 9999999998876654321 1000 0 0111100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
.+.+++ +. +..+.++.+++|++++++++|+||+|+|++ ...++++++.+++++ +++|++.+.++
T Consensus 58 --~~~~~~-----~~----~~~~~~i~~~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~---~~ii~sntSt~ 123 (287)
T PRK08293 58 --EATKEA-----PA----EAALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPE---KTIFATNSSTL 123 (287)
T ss_pred --CCChhh-----hH----HHHHcCeEEeCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCC---CCEEEECcccC
Confidence 000000 00 000126788899998899999999999976 689999999998876 67666655444
Q ss_pred cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE--eCChhhHHHHHHHhCCCCeEEE-ecCCh
Q 019978 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVW-DNGDL 277 (333)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~v~-~s~Di 277 (333)
.. ++ +.+.+..+ ..+.. ..|-.+ ........++. ..+++..+.+..++...+.++. ...|.
T Consensus 124 ~~-----------~~-~~~~~~~~-~r~vg-~Hf~~p--~~~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~ 187 (287)
T PRK08293 124 LP-----------SQ-FAEATGRP-EKFLA-LHFANE--IWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQ 187 (287)
T ss_pred CH-----------HH-HHhhcCCc-ccEEE-EcCCCC--CCcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 33 33 34444332 22211 122111 11111222222 2356678888888888776543 33454
Q ss_pred hH
Q 019978 278 VT 279 (333)
Q Consensus 278 ~g 279 (333)
-|
T Consensus 188 pg 189 (287)
T PRK08293 188 PG 189 (287)
T ss_pred CC
Confidence 44
No 41
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.36 E-value=6e-11 Score=114.90 Aligned_cols=196 Identities=19% Similarity=0.220 Sum_probs=129.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
++|+|||+|+||.++|..|.+. | ++|+++.++.....+. ...
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~s-G-----~~Vvv~~r~~~~s~~~-------------------------A~~------- 59 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDS-G-----VDVVVGLREGSKSWKK-------------------------AEA------- 59 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHC-C-----CEEEEEECCchhhHHH-------------------------HHH-------
Confidence 6899999999999999999998 8 8999888775432110 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHH-HHHHhhhhccCCCCEEEEeeecCcc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVF-EEISRYWKERITVPVIISLAKGVEA 202 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi~~ 202 (333)
. .+.+ .+.+++++.||+|++++|+....+++ +++.+.+++ +++| +++.|+..
T Consensus 60 ----------~------------G~~~-~s~~eaa~~ADVVvLaVPd~~~~~V~~~~I~~~Lk~---g~iL-~~a~G~~i 112 (330)
T PRK05479 60 ----------D------------GFEV-LTVAEAAKWADVIMILLPDEVQAEVYEEEIEPNLKE---GAAL-AFAHGFNI 112 (330)
T ss_pred ----------C------------CCee-CCHHHHHhcCCEEEEcCCHHHHHHHHHHHHHhcCCC---CCEE-EECCCCCh
Confidence 0 1223 36788899999999999999889999 789988886 5655 88889887
Q ss_pred cccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH-------HhccCceeEEEeCC--hhhHHHHHHHhCCCC-----
Q 019978 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE-------IYNKEYANARICGA--EKWRKPLAKFLRRPH----- 268 (333)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e-------v~~~~~~~~~~~~~--~~~~~~l~~ll~~~~----- 268 (333)
.. .+...+. .. -+++..|+.+.. ++.|.++.+.+..+ .+..+.+..+|...|
T Consensus 113 ~~------------~~~~p~~-~~-~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~~~g 178 (330)
T PRK05479 113 HF------------GQIVPPA-DV-DVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGTRAG 178 (330)
T ss_pred hh------------ceeccCC-CC-cEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCCccc
Confidence 52 2222332 12 246677998877 55666665433332 445666666666433
Q ss_pred -----eEEEecCChhHHH--HHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH
Q 019978 269 -----FTVWDNGDLVTHE--VMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM 322 (333)
Q Consensus 269 -----~~v~~s~Di~gve--~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l 322 (333)
|+-....|+.|.+ +||.+.-++..+.-.+-..+|. .....-.+++|++.+
T Consensus 179 ~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~----pe~Ay~e~~~e~k~i 235 (330)
T PRK05479 179 VIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQ----PEMAYFECLHELKLI 235 (330)
T ss_pred eeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHH
Confidence 3333457888864 5666665666665555555551 223334567888665
No 42
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.36 E-value=1.5e-11 Score=116.74 Aligned_cols=171 Identities=15% Similarity=0.123 Sum_probs=107.5
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcCC
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (333)
||+|||+|.||..+|..|+++ | ++|++|+|++++++++.. .
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-G-----~~V~~~dr~~~~~~~~~~------------------------~--------- 41 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-G-----YQLHVTTIGPEVADELLA------------------------A--------- 41 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHH------------------------C---------
Confidence 699999999999999999999 8 999999999875543110 0
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH---HHHHhhhhccCCCCEEEEeeecC
Q 019978 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF---EEISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl---~~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
.....++.+++++++|+||+++|.. .++.++ +.+.+.+++ +++++.++..
T Consensus 42 ----------------------g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~---g~iivd~st~- 95 (291)
T TIGR01505 42 ----------------------GAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKP---GKTLVDMSSI- 95 (291)
T ss_pred ----------------------CCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCC---CCEEEECCCC-
Confidence 1122356777889999999999975 566665 335555555 6777765533
Q ss_pred cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccC-ceeEEEeCChhhHHHHHHHhCCCCeEEEecCChhH
Q 019978 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKE-YANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (333)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~-~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di~g 279 (333)
.+.+ ++.+.+.+... .+.++..|.+..+..... ...++++++++..+.++.+|+..+.+++.....-.
T Consensus 96 ~~~~---------~~~l~~~l~~~--g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~g~~g~ 164 (291)
T TIGR01505 96 SPIE---------SKRFAKAVKEK--GIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVGGNGD 164 (291)
T ss_pred CHHH---------HHHHHHHHHHc--CCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEeCCCCH
Confidence 3321 12233333211 122445665543322211 12234567777888899999887766665555444
Q ss_pred HHHHHHHHHHHH
Q 019978 280 HEVMGGLKNVYA 291 (333)
Q Consensus 280 ve~~~alkNv~A 291 (333)
.+.++...|.+.
T Consensus 165 a~~~Kl~~n~~~ 176 (291)
T TIGR01505 165 GQTCKVANQIIV 176 (291)
T ss_pred HHHHHHHHHHHH
Confidence 566676666643
No 43
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.35 E-value=1.9e-11 Score=116.87 Aligned_cols=179 Identities=13% Similarity=0.152 Sum_probs=115.5
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
|||+|||+|.||+++|..|+++ | ++|.+|+|++++++++..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~-g-----~~v~v~dr~~~~~~~~~~--------------------------------- 41 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG-G-----HEVVGYDRNPEAVEALAE--------------------------------- 41 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC-C-----CeEEEEECCHHHHHHHHH---------------------------------
Confidence 6899999999999999999999 8 999999999876542110
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCch-hHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~---aDlIIlaVps~-~~~~vl~~i~~~l~~~~~~~~Ivs~~kG 199 (333)
..+.+.+++++.++. +|+||+++|.. .++++++.+.+.+++ ++++|.++++
T Consensus 42 ----------------------~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l~~~l~~---g~ivid~st~ 96 (301)
T PRK09599 42 ----------------------EGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDELAPLLSP---GDIVIDGGNS 96 (301)
T ss_pred ----------------------CCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHHHhhCCC---CCEEEeCCCC
Confidence 023344566666654 69999999987 889999988888876 6788887765
Q ss_pred CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchH--HHhccCceeEEEeCChhhHHHHHHHhCCCCe----EEEe
Q 019978 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS--EIYNKEYANARICGAEKWRKPLAKFLRRPHF----TVWD 273 (333)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~--ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~----~v~~ 273 (333)
-.... ....+.+.+ .| +.++-.|.... ....+ . .++++++++..++++.+|+..+- ++++
T Consensus 97 ~~~~~------~~~~~~~~~-~g-----~~~~dapvsG~~~~a~~g-~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~ 162 (301)
T PRK09599 97 YYKDD------IRRAELLAE-KG-----IHFVDVGTSGGVWGLERG-Y-CLMIGGDKEAVERLEPIFKALAPRAEDGYLH 162 (301)
T ss_pred ChhHH------HHHHHHHHH-cC-----CEEEeCCCCcCHHHHhcC-C-eEEecCCHHHHHHHHHHHHHHcccccCCeEe
Confidence 44321 112222221 12 22333443322 12234 3 34567888888888888886654 4555
Q ss_pred cCChhHHHHHHHHHHHH--HHHHHHHhcc
Q 019978 274 NGDLVTHEVMGGLKNVY--AIGAGMVAAL 300 (333)
Q Consensus 274 s~Di~gve~~~alkNv~--Ai~~Gi~~gl 300 (333)
..+.=.....+.+.|.+ +...++++++
T Consensus 163 ~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~ 191 (301)
T PRK09599 163 AGPVGAGHFVKMVHNGIEYGMMQAYAEGF 191 (301)
T ss_pred ECCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56653346677777763 2234444443
No 44
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.35 E-value=1.5e-11 Score=116.73 Aligned_cols=183 Identities=18% Similarity=0.206 Sum_probs=121.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
+||++||.|.||..||..|.++ | |+|++|+|++++..+. ...
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a-G-----~~v~v~~r~~~ka~~~--------~~~------------------------ 42 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA-G-----HEVTVYNRTPEKAAEL--------LAA------------------------ 42 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC-C-----CEEEEEeCChhhhhHH--------HHH------------------------
Confidence 5899999999999999999999 8 9999999999763210 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH---HHHhhhhccCCCCEEEEeeec
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE---EISRYWKERITVPVIISLAKG 199 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~---~i~~~l~~~~~~~~Ivs~~kG 199 (333)
.......++.+++..+|+||.++|.. ++++++- .+...+++ ++++|.++ .
T Consensus 43 ----------------------~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~---G~i~IDmS-T 96 (286)
T COG2084 43 ----------------------AGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKP---GAIVIDMS-T 96 (286)
T ss_pred ----------------------cCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCC---CCEEEECC-C
Confidence 02334566778899999999999965 7888884 46666666 77777765 3
Q ss_pred CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCChhH
Q 019978 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (333)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di~g 279 (333)
+.++. .+.+.+.+++ .|.......|..|+.-+. .+..+ ++++++++..++++.+|+..+-+++...+.=.
T Consensus 97 isp~~-----a~~~a~~~~~-~G~~~lDAPVsGg~~~A~---~GtLt-imvGG~~~~f~r~~pvl~~~g~~i~~~G~~G~ 166 (286)
T COG2084 97 ISPET-----ARELAAALAA-KGLEFLDAPVSGGVPGAA---AGTLT-IMVGGDAEAFERAKPVLEAMGKNIVHVGPVGA 166 (286)
T ss_pred CCHHH-----HHHHHHHHHh-cCCcEEecCccCCchhhh---hCceE-EEeCCCHHHHHHHHHHHHHhcCceEEECCCCc
Confidence 44431 1222333322 232211112344443332 23222 35678889999999999999888887777733
Q ss_pred HHHHHHHHHHHHH--HHHHHhcc
Q 019978 280 HEVMGGLKNVYAI--GAGMVAAL 300 (333)
Q Consensus 280 ve~~~alkNv~Ai--~~Gi~~gl 300 (333)
-+.++...|++.. ..++++++
T Consensus 167 G~~~Kl~nn~l~~~~~~a~aEAl 189 (286)
T COG2084 167 GQAAKLANNILLAGNIAALAEAL 189 (286)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888887443 25555544
No 45
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.35 E-value=1.2e-11 Score=117.41 Aligned_cols=177 Identities=18% Similarity=0.171 Sum_probs=115.8
Q ss_pred EECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcCCccc
Q 019978 48 GVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLH 127 (333)
Q Consensus 48 IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 127 (333)
|||+|.||.++|..|+++ | |+|++|+|++++++++..
T Consensus 1 ~IGlG~mG~~mA~~L~~~-G-----~~V~v~dr~~~~~~~l~~------------------------------------- 37 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA-G-----HPVRVFDLFPDAVEEAVA------------------------------------- 37 (288)
T ss_pred CCcccHhHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-------------------------------------
Confidence 689999999999999999 8 999999999876543210
Q ss_pred chhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-hhHHHHH---HHHHhhhhccCCCCEEEEeeecCccc
Q 019978 128 ADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF---EEISRYWKERITVPVIISLAKGVEAE 203 (333)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps-~~~~~vl---~~i~~~l~~~~~~~~Ivs~~kGi~~~ 203 (333)
..+..++++.++++++|+||++||+ ..+++++ +.+.+.+++ ++++|.++ ++.++
T Consensus 38 ------------------~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~~~---g~~vid~s-t~~p~ 95 (288)
T TIGR01692 38 ------------------AGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKVAK---GSLLIDCS-TIDPD 95 (288)
T ss_pred ------------------cCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcCCC---CCEEEECC-CCCHH
Confidence 0233456788889999999999998 6688888 677777765 67777776 66665
Q ss_pred ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHH--hccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCChhHHH
Q 019978 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI--YNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (333)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev--~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di~gve 281 (333)
+ .+.+++.+.+ .|. .++-.|...... ..+..+ .+++++++..++++.+|+..+-++.+..+.-..+
T Consensus 96 ~-----~~~~~~~~~~-~g~-----~~vdaPv~Gg~~~a~~g~l~-~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g~g~ 163 (288)
T TIGR01692 96 S-----ARKLAELAAA-HGA-----VFMDAPVSGGVGGARAGTLT-FMVGGVAEEFAAAEPVLGPMGRNIVHCGDHGAGQ 163 (288)
T ss_pred H-----HHHHHHHHHH-cCC-----cEEECCCCCCHHHHhhCcEE-EEECCCHHHHHHHHHHHHHhcCCeEeeCCCCHHH
Confidence 2 2333343332 232 234444332211 123222 3456777788889999987766666665555556
Q ss_pred HHHHHHHHHHH--HHHHHhccC
Q 019978 282 VMGGLKNVYAI--GAGMVAALT 301 (333)
Q Consensus 282 ~~~alkNv~Ai--~~Gi~~gl~ 301 (333)
..+...|.+.. ..++.+++.
T Consensus 164 ~~Kl~~n~~~~~~~~~~~Ea~~ 185 (288)
T TIGR01692 164 AAKICNNMLLGISMIGTAEAMA 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776322 234555443
No 46
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.34 E-value=2.6e-11 Score=115.27 Aligned_cols=170 Identities=18% Similarity=0.210 Sum_probs=108.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
+|||+|||+|.||..+|..|++. | ++|.+|+|+++..+++. +
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~-g-----~~v~~~d~~~~~~~~~~---------~----------------------- 43 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA-G-----YSLVVYDRNPEAVAEVI---------A----------------------- 43 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHH---------H-----------------------
Confidence 37999999999999999999998 8 99999999986543210 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH---HHHHhhhhccCCCCEEEEeee
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF---EEISRYWKERITVPVIISLAK 198 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl---~~i~~~l~~~~~~~~Ivs~~k 198 (333)
..+...++++++++++|+||+++|.. .++.++ +.+.+.+++ +++++.++.
T Consensus 44 -----------------------~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~---g~iiid~st 97 (296)
T PRK11559 44 -----------------------AGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKP---GTVVIDMSS 97 (296)
T ss_pred -----------------------CCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCC---CcEEEECCC
Confidence 02334567778888999999999954 566665 446666665 677776653
Q ss_pred cCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHH--hccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCC
Q 019978 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI--YNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (333)
Q Consensus 199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev--~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~D 276 (333)
. .+.+ ++.+.+.+... ...++..|.+.... ..+... ++++++++..+.++.+|...+.++....+
T Consensus 98 ~-~~~~---------~~~l~~~~~~~--g~~~~d~pv~g~~~~a~~g~l~-i~~gg~~~~~~~~~~~l~~~~~~~~~~g~ 164 (296)
T PRK11559 98 I-APLA---------SREIAAALKAK--GIEMLDAPVSGGEPKAIDGTLS-VMVGGDKAIFDKYYDLMKAMAGSVVHTGD 164 (296)
T ss_pred C-CHHH---------HHHHHHHHHHc--CCcEEEcCCCCCHHHHhhCcEE-EEECCCHHHHHHHHHHHHHhcCCeEEeCC
Confidence 3 2221 12233333211 12244455443221 123222 34566777888899998877666665556
Q ss_pred hhHHHHHHHHHHH
Q 019978 277 LVTHEVMGGLKNV 289 (333)
Q Consensus 277 i~gve~~~alkNv 289 (333)
.-..+..+...|.
T Consensus 165 ~g~a~~~Kl~~n~ 177 (296)
T PRK11559 165 IGAGNVTKLANQV 177 (296)
T ss_pred cCHHHHHHHHHHH
Confidence 5555777777775
No 47
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.34 E-value=9.1e-12 Score=111.48 Aligned_cols=168 Identities=18% Similarity=0.219 Sum_probs=97.1
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
|||+|||+|.+|..+|..||+. | |+|+.||.++++++.++ ++. -|.+.+++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~-G-----~~V~g~D~~~~~v~~l~---------~g~--------~p~~E~~l------ 51 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK-G-----HQVIGVDIDEEKVEALN---------NGE--------LPIYEPGL------ 51 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT-T-----SEEEEE-S-HHHHHHHH---------TTS--------SSS-CTTH------
T ss_pred CEEEEECCCcchHHHHHHHHhC-C-----CEEEEEeCChHHHHHHh---------hcc--------ccccccch------
Confidence 8999999999999999999999 8 99999999998876543 321 22333332
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------hHHHHHHHHHhhhhccCCCCEE
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI 193 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~----------~~~~vl~~i~~~l~~~~~~~~I 193 (333)
+|++.+...- .++.+++|.++++.++|++|+|||.. ++.+++++|.+.+.+ ++ +
T Consensus 52 -----~~ll~~~~~~-------~~l~~t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~---~~-l 115 (185)
T PF03721_consen 52 -----DELLKENVSA-------GRLRATTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRP---GD-L 115 (185)
T ss_dssp -----HHHHHHHHHT-------TSEEEESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCS---CE-E
T ss_pred -----hhhhcccccc-------ccchhhhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhh---cc-e
Confidence 2344443211 27899999999999999999999852 589999999999886 44 4
Q ss_pred EEeeecCcccccCCccCC-CHHHHHHhHhCCCCCcEEEEcCCCchHHHhc----cCceeEEEeCChh-hHHHHHH
Q 019978 194 ISLAKGVEAELEAVPRII-TPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGAEK-WRKPLAK 262 (333)
Q Consensus 194 vs~~kGi~~~~~~~~~~~-~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~----~~~~~~~~~~~~~-~~~~l~~ 262 (333)
|.+-..+.+++ .+ ....++++.-+.. ..+.+.+-|.+..+... ..+..++.+.+++ ..+.+++
T Consensus 116 vV~~STvppGt-----t~~~~~~ile~~~~~~-~~f~la~~PErl~~G~a~~d~~~~~rvV~G~~~~~~~~~~~~ 184 (185)
T PF03721_consen 116 VVIESTVPPGT-----TEELLKPILEKRSGKK-EDFHLAYSPERLREGRAIEDFRNPPRVVGGCDDESAEERLKE 184 (185)
T ss_dssp EEESSSSSTTH-----HHHHHHHHHHHHCCTT-TCEEEEE------TTSHHHHHHSSSEEEEEESSHHHHHHHHH
T ss_pred EEEccEEEEee-----ehHhhhhhhhhhcccc-cCCeEEECCCccCCCCcchhccCCCEEEEeCCcHHHHHHHhc
Confidence 44555666653 22 3334444433322 45777788888664321 1234444443333 3435554
No 48
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.33 E-value=2e-11 Score=123.68 Aligned_cols=186 Identities=15% Similarity=0.083 Sum_probs=121.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
+.+|+|||+|.||++||..|+++ | |+|++|+|++++++++.... . + ++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~-G-----~~V~v~dr~~~~~~~l~~~~--------~--------~----~g------ 48 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR-G-----FKISVYNRTYEKTEEFVKKA--------K--------E----GN------ 48 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHHhh--------h--------h----cC------
Confidence 35899999999999999999999 8 99999999998765432110 0 0 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc---CCCEEEEecC-chhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW---DADIVINGLP-STETKEVFEEISRYWKERITVPVIISLAK 198 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~---~aDlIIlaVp-s~~~~~vl~~i~~~l~~~~~~~~Ivs~~k 198 (333)
..+..++++++++. ++|+||+++| +..++++++++.+++.+ +.+||.+++
T Consensus 49 -----------------------~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L~~---g~iIID~gn 102 (470)
T PTZ00142 49 -----------------------TRVKGYHTLEELVNSLKKPRKVILLIKAGEAVDETIDNLLPLLEK---GDIIIDGGN 102 (470)
T ss_pred -----------------------CcceecCCHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHhhCCC---CCEEEECCC
Confidence 02445677888775 5898888865 56899999999999987 789999998
Q ss_pred cCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchH-HHhccCceeEEEeCChhhHHHHHHHhCCCCeE------E
Q 019978 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS-EIYNKEYANARICGAEKWRKPLAKFLRRPHFT------V 271 (333)
Q Consensus 199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~-ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~------v 271 (333)
+....+ .++..+ +.+ .| +.++..|.... +.++..+ ..+++++++..++++.+|+..+-+ +
T Consensus 103 ~~~~dt-----~~r~~~-l~~-~G-----i~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~piL~~ia~~~~~~~~~ 169 (470)
T PTZ00142 103 EWYLNT-----ERRIKR-CEE-KG-----ILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDILEKCSAKVGDSPCV 169 (470)
T ss_pred CCHHHH-----HHHHHH-HHH-cC-----CeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhcCCCCeE
Confidence 877653 111111 111 12 22444444432 2233334 457788888888888888875444 3
Q ss_pred EecCChhHH-HHHHHHHHH--HHHHHHHHhcc
Q 019978 272 WDNGDLVTH-EVMGGLKNV--YAIGAGMVAAL 300 (333)
Q Consensus 272 ~~s~Di~gv-e~~~alkNv--~Ai~~Gi~~gl 300 (333)
.+..+. |. ...+..-|. |+....+++++
T Consensus 170 ~~~G~~-GaGh~vKmvhN~ie~~~m~~iaEa~ 200 (470)
T PTZ00142 170 TYVGPG-SSGHYVKMVHNGIEYGDMQLISESY 200 (470)
T ss_pred EEECCC-CHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333343 43 456677775 34445555554
No 49
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.33 E-value=8.4e-11 Score=119.97 Aligned_cols=177 Identities=18% Similarity=0.207 Sum_probs=117.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
.|||+|||+|.||+++|..|+++ | ++|++|+++++.++++.. .+... ..+..++...
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~-G-----~~V~v~D~~~~~~~~~~~-----~~~~~-------~~~~~~l~~~----- 60 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA-G-----IDVAVFDPHPEAERIIGE-----VLANA-------ERAYAMLTDA----- 60 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-----HHHHH-------HHHHhhhccc-----
Confidence 47999999999999999999999 8 999999999987654321 11100 0000111110
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~--~~~vl~~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
.+. ...++.+++++++++++||+||+++|++. .+.++.++.+++++ +++|.|.+.|+
T Consensus 61 --~~~----------------~~g~i~~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~---~~iI~SsTsgi 119 (495)
T PRK07531 61 --PLP----------------PEGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARP---DALIGSSTSGF 119 (495)
T ss_pred --hhh----------------hhhceEeeCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCC---CcEEEEcCCCC
Confidence 000 00146788899889999999999999984 77788888888776 67888888887
Q ss_pred cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeC---ChhhHHHHHHHhCCCCeEEEec-CC
Q 019978 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG---AEKWRKPLAKFLRRPHFTVWDN-GD 276 (333)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~---~~~~~~~l~~ll~~~~~~v~~s-~D 276 (333)
... + +.+.+..+ ...++..|..+.... +...++.+ +++..+.++.+|+..+-.+... .|
T Consensus 120 ~~s-----------~-l~~~~~~~--~r~~~~hP~nP~~~~---~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~k~ 182 (495)
T PRK07531 120 LPS-----------D-LQEGMTHP--ERLFVAHPYNPVYLL---PLVELVGGGKTSPETIRRAKEILREIGMKPVHIAKE 182 (495)
T ss_pred CHH-----------H-HHhhcCCc--ceEEEEecCCCcccC---ceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEeecCC
Confidence 754 2 45555432 234667776654222 22223333 3578899999999887666544 45
Q ss_pred hhHH
Q 019978 277 LVTH 280 (333)
Q Consensus 277 i~gv 280 (333)
+-|.
T Consensus 183 ~~gf 186 (495)
T PRK07531 183 IDAF 186 (495)
T ss_pred Ccch
Confidence 5553
No 50
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.33 E-value=6e-11 Score=118.89 Aligned_cols=194 Identities=10% Similarity=0.089 Sum_probs=120.6
Q ss_pred CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
.++|||+|||.|+||..+|..|++. |+|+.||+++++++.++ .+. .+.+.+.+
T Consensus 4 ~~~mkI~vIGlGyvGlpmA~~la~~-------~~V~g~D~~~~~ve~l~---------~G~--------~~~~e~~~--- 56 (425)
T PRK15182 4 IDEVKIAIIGLGYVGLPLAVEFGKS-------RQVVGFDVNKKRILELK---------NGV--------DVNLETTE--- 56 (425)
T ss_pred CCCCeEEEECcCcchHHHHHHHhcC-------CEEEEEeCCHHHHHHHH---------CcC--------CCCCCCCH---
Confidence 4569999999999999999998764 89999999998877644 111 11122211
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------hHHHHHHHHHhhhhccCCC
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITV 190 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~----------~~~~vl~~i~~~l~~~~~~ 190 (333)
+|+... ..+.++++.+ ++++||++|+|||.. ++....+.|.+++++ +
T Consensus 57 --------~~l~~~-----------g~l~~t~~~~-~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~---g 113 (425)
T PRK15182 57 --------EELREA-----------RYLKFTSEIE-KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNR---G 113 (425)
T ss_pred --------HHHHhh-----------CCeeEEeCHH-HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCC---C
Confidence 112111 1466777775 588999999999853 566666788888876 5
Q ss_pred CEEEEeeecCcccccCCccCCCHHHHHHhHhCCC-CCcEEEEcCCCchHHHhccC----ceeEEEeCChhhHHHHHHHhC
Q 019978 191 PVIISLAKGVEAELEAVPRIITPTQMINRATGVP-IENILYLGGPNIASEIYNKE----YANARICGAEKWRKPLAKFLR 265 (333)
Q Consensus 191 ~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~-~~~~~vl~GP~~a~ev~~~~----~~~~~~~~~~~~~~~l~~ll~ 265 (333)
++|| ..+.+.+++ +.+.....+++..|.. ...+.+.+-|.+..+..... +..++.+.++...+.++.++.
T Consensus 114 ~lVI-~~STv~pgt----t~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~ 188 (425)
T PRK15182 114 DIVV-YESTVYPGC----TEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRLTNIKKITSGSTAQIAELIDEVYQ 188 (425)
T ss_pred CEEE-EecCCCCcc----hHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccccCCCeEEECCCHHHHHHHHHHHH
Confidence 5554 444566653 1112233344322321 12355666777765543221 233344555556677777776
Q ss_pred CCC-eEEEecCChhHHHHHHHHHHH
Q 019978 266 RPH-FTVWDNGDLVTHEVMGGLKNV 289 (333)
Q Consensus 266 ~~~-~~v~~s~Di~gve~~~alkNv 289 (333)
... ...+...++...|..|.+-|.
T Consensus 189 ~~~~~~~~~~~~~~~AE~~Kl~~N~ 213 (425)
T PRK15182 189 QIISAGTYKAESIKVAEAAKVIENT 213 (425)
T ss_pred HHhhcCcEEecCHHHHHHHHHHHHH
Confidence 532 224567788889999988886
No 51
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.32 E-value=6.1e-11 Score=114.39 Aligned_cols=163 Identities=20% Similarity=0.199 Sum_probs=114.1
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc-chhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~-~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
+||+|||+|+||.++|..|.+. | ++|+++.++.. ..+++ ..
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~s-G-----~~Viv~~~~~~~~~~~a--------------------------~~------ 45 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDS-G-----LNVIVGLRKGGASWKKA--------------------------TE------ 45 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC-C-----CeEEEEECcChhhHHHH--------------------------HH------
Confidence 7899999999999999999998 8 78877666542 21110 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
. .+.+. +..++++++|+|++++|++ +...+++++.+.+++ + .+||++.|+.
T Consensus 46 -----------~------------Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~~ei~~~l~~---g-~iVs~aaG~~ 97 (314)
T TIGR00465 46 -----------D------------GFKVG-TVEEAIPQADLIMNLLPDEVQHEVYEAEIQPLLKE---G-KTLGFSHGFN 97 (314)
T ss_pred -----------C------------CCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHHHHHHhhCCC---C-cEEEEeCCcc
Confidence 0 23333 4677889999999999999 777778889888875 4 4899999999
Q ss_pred ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH-H------hccCceeEEEe--CChhhHHHHHHHhCCCCeE--
Q 019978 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE-I------YNKEYANARIC--GAEKWRKPLAKFLRRPHFT-- 270 (333)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e-v------~~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~-- 270 (333)
... ++..+|. ..-.++.+|+.+.. + +.|.++.+.+. .+.+..+.+..+|...|..
T Consensus 98 i~~------------~~~~~~~--~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~~iG~~~~ 163 (314)
T TIGR00465 98 IHF------------VQIVPPK--DVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYAKAIGGGRA 163 (314)
T ss_pred Hhh------------ccccCCC--CCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCcc
Confidence 752 4444542 22358899999998 4 77766654332 2345667777888776554
Q ss_pred -----E---EecCChhHHH--HHHHH
Q 019978 271 -----V---WDNGDLVTHE--VMGGL 286 (333)
Q Consensus 271 -----v---~~s~Di~gve--~~~al 286 (333)
. ++.+|..+.. +||..
T Consensus 164 ~~~~t~f~~e~~edl~~~~t~l~Gs~ 189 (314)
T TIGR00465 164 GVLETTFKEETESDLFGEQAVLCGGL 189 (314)
T ss_pred ceeechhHhhhhHHhcCcchhHHhHH
Confidence 2 5667777754 56543
No 52
>PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1.1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B ....
Probab=99.32 E-value=1.3e-12 Score=113.19 Aligned_cols=55 Identities=31% Similarity=0.487 Sum_probs=51.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCCC
Q 019978 275 GDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSWQ 330 (333)
Q Consensus 275 ~Di~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~~ 330 (333)
+|++|+|+|++|||||||++||++|+++ |+|+++++++++++||..+ +++|++..
T Consensus 1 ~Dv~GvEl~galKNi~Aia~Gi~~g~~~-g~N~~aal~t~g~~Em~~l~~~~gg~~~ 56 (149)
T PF07479_consen 1 SDVVGVELCGALKNIYAIAAGIADGLGL-GDNTKAALITRGLAEMSRLAKALGGDPE 56 (149)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHHHTSSCC
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 6999999999999999999999999998 6999999999999999999 99999865
No 53
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.32 E-value=7.3e-11 Score=112.17 Aligned_cols=180 Identities=16% Similarity=0.181 Sum_probs=110.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
.+||+|||+|.||+++|..|+.+ | ++|++|+++++.++++.. .+... +.++.... .++..
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~~~~~~~-----~i~~~---~~~~~~~g-~~~~~----- 63 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA-G-----YDVLLNDVSADRLEAGLA-----TINGN---LARQVAKG-KISEE----- 63 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHH-----HHHHH---HHHHHHcC-CCCHH-----
Confidence 46899999999999999999999 8 999999999887654221 11110 00000000 01100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
.. +..+.+++++++++ ++.+||+||+|+|+. ..+.+++++.+++++ +++++|.+.++
T Consensus 64 --~~---------------~~~~~~i~~~~~~~-~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~---~~ii~s~ts~~ 122 (292)
T PRK07530 64 --AR---------------AAALARISTATDLE-DLADCDLVIEAATEDETVKRKIFAQLCPVLKP---EAILATNTSSI 122 (292)
T ss_pred --HH---------------HHHHhCeEeeCCHH-HhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCC---CcEEEEcCCCC
Confidence 00 00012577778885 478999999999985 578889999998887 78888877776
Q ss_pred cccccCCccCCCHHHHHHhHhCCCCCcEEE-EcCCCchHHHhccCceeEEE--eCChhhHHHHHHHhCCCCeEEEecCCh
Q 019978 201 EAELEAVPRIITPTQMINRATGVPIENILY-LGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (333)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~v-l~GP~~a~ev~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~v~~s~Di 277 (333)
... + +++.+..+..-+.+ ..-|.... .. ..++. ..+++..+.+..+|...+..+.+..|.
T Consensus 123 ~~s-----------~-la~~~~~~~r~~g~h~~~p~~~~---~~--vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~ 185 (292)
T PRK07530 123 SIT-----------R-LASATDRPERFIGIHFMNPVPVM---KL--VELIRGIATDEATFEAAKEFVTKLGKTITVAEDF 185 (292)
T ss_pred CHH-----------H-HHhhcCCcccEEEeeccCCcccC---ce--EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 643 2 44444322111111 11222211 11 11121 356778899999999888777766775
Q ss_pred hHH
Q 019978 278 VTH 280 (333)
Q Consensus 278 ~gv 280 (333)
-|-
T Consensus 186 pg~ 188 (292)
T PRK07530 186 PAF 188 (292)
T ss_pred CCh
Confidence 553
No 54
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.31 E-value=8.2e-11 Score=119.26 Aligned_cols=197 Identities=17% Similarity=0.115 Sum_probs=127.5
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
+|||+|||+|++|..+|..|++. | .+++|+.|+.+++++++++...+ +.+.+++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~-g---~g~~V~gvD~~~~~v~~l~~g~~-----------------~~~e~gl----- 54 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALK-C---PDIEVVVVDISVPRIDAWNSDQL-----------------PIYEPGL----- 54 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-C---CCCeEEEEECCHHHHHHHHcCCC-----------------ccCCCCH-----
Confidence 58999999999999999999987 5 12679999999998876553221 1122222
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC--ch-------------hHHHHHHHHHhhhhcc
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--ST-------------ETKEVFEEISRYWKER 187 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVp--s~-------------~~~~vl~~i~~~l~~~ 187 (333)
+|++.++.. .++.++++..+++.+||++|+||| .. ++.+++++|.+++++
T Consensus 55 ------~ell~~~~~--------~~l~~t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~- 119 (473)
T PLN02353 55 ------DEVVKQCRG--------KNLFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKS- 119 (473)
T ss_pred ------HHHHHHhhc--------CCEEEEcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCC-
Confidence 233332110 258899999888999999999985 31 689999999999876
Q ss_pred CCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhcc----CceeEEEeC-Ch----hhHH
Q 019978 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNK----EYANARICG-AE----KWRK 258 (333)
Q Consensus 188 ~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~----~~~~~~~~~-~~----~~~~ 258 (333)
+++|| .-..+++++ .+.+...+.+... ...+.+.+-|.+..+...- .+..+++++ ++ +..+
T Consensus 120 --~~lVv-~~STvp~Gt-----t~~~~~~l~~~~~--g~~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~ 189 (473)
T PLN02353 120 --DKIVV-EKSTVPVKT-----AEAIEKILTHNSK--GINFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQ 189 (473)
T ss_pred --CcEEE-EeCCCCCCh-----HHHHHHHHHhhCC--CCCeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHH
Confidence 55443 343455542 2333333433211 1346788899887654321 133344443 22 2467
Q ss_pred HHHHHhCCCC-eEEEecCChhHHHHHHHHHHHH
Q 019978 259 PLAKFLRRPH-FTVWDNGDLVTHEVMGGLKNVY 290 (333)
Q Consensus 259 ~l~~ll~~~~-~~v~~s~Di~gve~~~alkNv~ 290 (333)
.+++++...- -......++..+|+++..-|.+
T Consensus 190 ~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ 222 (473)
T PLN02353 190 ALKDVYAHWVPEERIITTNLWSAELSKLAANAF 222 (473)
T ss_pred HHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHH
Confidence 7777776432 1345679999999999988863
No 55
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.30 E-value=1.3e-11 Score=109.99 Aligned_cols=173 Identities=24% Similarity=0.341 Sum_probs=103.1
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcCC
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (333)
||+|||+|.||..+|..++.+ | ++|++|+++++.+++... . +... +++..+.. .+...
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~----i~~~---l~~~~~~~-~~~~~------- 58 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-G-----YEVTLYDRSPEALERARK-R----IERL---LDRLVRKG-RLSQE------- 58 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-T-----SEEEEE-SSHHHHHHHHH-H----HHHH---HHHHHHTT-TTTHH-------
T ss_pred CEEEEcCCHHHHHHHHHHHhC-C-----CcEEEEECChHHHHhhhh-H----HHHH---Hhhhhhhc-cchhh-------
Confidence 799999999999999999999 8 999999999987665332 1 1111 11111111 11100
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (333)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~ 202 (333)
. ++ ..+.++.+++|++++. +||+||.|+|.. ..++++.++..++++ ++++.|.+.++..
T Consensus 59 ~--~~-------------~~~~~i~~~~dl~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~---~~ilasnTSsl~i 119 (180)
T PF02737_consen 59 E--AD-------------AALARISFTTDLEEAV-DADLVIEAIPEDLELKQELFAELDEICPP---DTILASNTSSLSI 119 (180)
T ss_dssp H--HH-------------HHHHTEEEESSGGGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-T---TSEEEE--SSS-H
T ss_pred h--hh-------------hhhhhcccccCHHHHh-hhheehhhccccHHHHHHHHHHHHHHhCC---CceEEecCCCCCH
Confidence 0 00 0113789999999877 999999999986 689999999999988 8999888888776
Q ss_pred cccCCccCCCHHHHHHhHhCCCCCcEEEE--cCCCchHHHhccCceeEEEe--CChhhHHHHHHHhCCCCeEEEecCC
Q 019978 203 ELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (333)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~~~vl--~GP~~a~ev~~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v~~s~D 276 (333)
. + +.+.++.+ ..+..+ ..|.+... ...++.+ .+++.++.+..++...|..+....|
T Consensus 120 ~-----------~-la~~~~~p-~R~ig~Hf~~P~~~~~-----lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 120 S-----------E-LAAALSRP-ERFIGMHFFNPPHLMP-----LVEVVPGPKTSPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp H-----------H-HHTTSSTG-GGEEEEEE-SSTTT-------EEEEEE-TTS-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred H-----------H-HHhccCcC-ceEEEEecccccccCc-----eEEEeCCCCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 4 2 44545433 222211 23433211 1112222 2456788888888887777665554
No 56
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.30 E-value=2.1e-10 Score=108.90 Aligned_cols=177 Identities=19% Similarity=0.185 Sum_probs=110.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
+||+|||+|.||..+|..|+++ | ++|++|+++++.++++... +........ ... .+...
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-G-----~~V~~~d~~~~~~~~~~~~-~~~~~~~~~-------~~g-~~~~~------ 60 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-G-----FQTTLVDIKQEQLESAQQE-IASIFEQGV-------ARG-KLTEA------ 60 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-C-----CcEEEEeCCHHHHHHHHHH-HHHHHHHHH-------HcC-CCCHH------
Confidence 5899999999999999999999 8 9999999999877664422 111111100 000 00000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~--~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
.. +..+.++..++++++++++||+||+|+|... ...++.++.+++++ ++++++.+..+.
T Consensus 61 -~~---------------~~~~~~i~~~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~---~~il~~~tSt~~ 121 (288)
T PRK09260 61 -AR---------------QAALARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPA---ECYIATNTSTMS 121 (288)
T ss_pred -HH---------------HHHHhCeEEeCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCC---CcEEEEcCCCCC
Confidence 00 0001257788899888999999999999875 66788888888876 676666665555
Q ss_pred ccccCCccCCCHHHHHHhHhCCCCC--cEEEEcCCCchHHHhccCceeEEEeC---ChhhHHHHHHHhCCCCeEEEecCC
Q 019978 202 AELEAVPRIITPTQMINRATGVPIE--NILYLGGPNIASEIYNKEYANARICG---AEKWRKPLAKFLRRPHFTVWDNGD 276 (333)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~--~~~vl~GP~~a~ev~~~~~~~~~~~~---~~~~~~~l~~ll~~~~~~v~~s~D 276 (333)
+. + +.+.+..+.. ...++ .|... .+-..++.+ +++..+.++.+|...+-.+....|
T Consensus 122 ~~-----------~-l~~~~~~~~r~~g~h~~-~Pv~~------~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d 182 (288)
T PRK09260 122 PT-----------E-IASFTKRPERVIAMHFF-NPVHK------MKLVELIRGLETSDETVQVAKEVAEQMGKETVVVNE 182 (288)
T ss_pred HH-----------H-HHhhcCCcccEEEEecC-CCccc------CceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecC
Confidence 43 2 4444432211 11122 34322 122223333 667889999999988877666667
Q ss_pred hhH
Q 019978 277 LVT 279 (333)
Q Consensus 277 i~g 279 (333)
.-|
T Consensus 183 ~~G 185 (288)
T PRK09260 183 FPG 185 (288)
T ss_pred ccc
Confidence 555
No 57
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.29 E-value=2.8e-10 Score=108.39 Aligned_cols=182 Identities=20% Similarity=0.232 Sum_probs=111.1
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
.++||+|||+|.||.++|..|+.. | ++|++|+++++.+++... . +... ++++.......+.
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~-G-----~~V~~~d~~~~~~~~~~~-~----~~~~---~~~~~~~g~~~~~----- 63 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAA-G-----MDVWLLDSDPAALSRGLD-S----ISSS---LARLVKKGKMSQE----- 63 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHH-H----HHHH---HHHHHHcCCCCHH-----
Confidence 356899999999999999999999 8 999999999876653211 1 1110 0111101000000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC--chhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--STETKEVFEEISRYWKERITVPVIISLAKG 199 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVp--s~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG 199 (333)
.. +..+..+.++++.+ ++++||+||+|+| ......+++++.+++++ +++|+|.+.|
T Consensus 64 ---~~---------------~~~~~~~~~~~~~~-~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~---~~il~s~tS~ 121 (295)
T PLN02545 64 ---EA---------------DATLGRIRCTTNLE-ELRDADFIIEAIVESEDLKKKLFSELDRICKP---SAILASNTSS 121 (295)
T ss_pred ---HH---------------HHHHhceEeeCCHH-HhCCCCEEEEcCccCHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 00 00001355666764 5799999999999 66788999999988887 6778788888
Q ss_pred CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE--eCChhhHHHHHHHhCCCCeEEEecCCh
Q 019978 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (333)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~v~~s~Di 277 (333)
+... .+++.++.+ ..+.. ..|..+... .....++. ..+++..+.++.+|...+..+.+..|.
T Consensus 122 i~~~------------~l~~~~~~~-~r~~g-~h~~~pp~~--~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~ 185 (295)
T PLN02545 122 ISIT------------RLASATQRP-QQVIG-MHFMNPPPI--MKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDY 185 (295)
T ss_pred CCHH------------HHHhhcCCC-cceEE-EeccCCccc--CceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCc
Confidence 7654 245544432 12211 112222111 11122222 235678899999999888777766665
Q ss_pred hHH
Q 019978 278 VTH 280 (333)
Q Consensus 278 ~gv 280 (333)
-|-
T Consensus 186 ~g~ 188 (295)
T PLN02545 186 PGF 188 (295)
T ss_pred ccH
Confidence 553
No 58
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.26 E-value=2.8e-10 Score=106.33 Aligned_cols=149 Identities=16% Similarity=0.104 Sum_probs=102.6
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
|||+|||+|.||.+++..|.+. |. .. ..+.+|+|++++++++. . .+.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~-g~-~~-~~i~v~~r~~~~~~~l~---------~-------------~~~-------- 47 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS-PA-DV-SEIIVSPRNAQIAARLA---------E-------------RFP-------- 47 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC-CC-Ch-heEEEECCCHHHHHHHH---------H-------------HcC--------
Confidence 6899999999999999999987 61 11 34678998876543211 0 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~ 203 (333)
.+.+.++.+++++++|+||+|+|++.+.++++++. +.+ ++++|++..|+..+
T Consensus 48 -----------------------~~~~~~~~~~~~~~aDvVilav~p~~~~~vl~~l~--~~~---~~~vis~~ag~~~~ 99 (258)
T PRK06476 48 -----------------------KVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLRALR--FRP---GQTVISVIAATDRA 99 (258)
T ss_pred -----------------------CceEeCCHHHHHHhCCEEEEEeCHHHHHHHHHHhc--cCC---CCEEEEECCCCCHH
Confidence 23455677777889999999999999999998873 344 67899988777754
Q ss_pred ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEe
Q 019978 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD 273 (333)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~ 273 (333)
.+++.++.. ...++..|+++.....+... ++... +.++++|+..|-.++.
T Consensus 100 ------------~l~~~~~~~--~~~~r~~P~~~~a~~~g~t~---~~~~~---~~~~~l~~~lG~~~~~ 149 (258)
T PRK06476 100 ------------ALLEWIGHD--VKLVRAIPLPFVAERKGVTA---IYPPD---PFVAALFDALGTAVEC 149 (258)
T ss_pred ------------HHHHHhCCC--CCEEEECCCChhhhCCCCeE---ecCCH---HHHHHHHHhcCCcEEE
Confidence 467766532 23578899988765554322 23222 4777888877765554
No 59
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=99.26 E-value=1.3e-11 Score=105.56 Aligned_cols=116 Identities=22% Similarity=0.361 Sum_probs=83.7
Q ss_pred EEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcCCc
Q 019978 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRT 125 (333)
Q Consensus 46 I~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 125 (333)
|+|+|+|++|+.+|..|++. | ++|+++.|++ +++.++.+++ .+.... ++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-g-----~~V~l~~r~~-~~~~~~~~g~-------------------~~~~~~---~~~~ 51 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-G-----HDVTLVSRSP-RLEAIKEQGL-------------------TITGPD---GDET 51 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-T-----CEEEEEESHH-HHHHHHHHCE-------------------EEEETT---EEEE
T ss_pred CEEECcCHHHHHHHHHHHHC-C-----CceEEEEccc-cHHhhhheeE-------------------EEEecc---ccee
Confidence 78999999999999999998 8 9999999998 6665443331 111100 0000
Q ss_pred ccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccccc
Q 019978 126 LHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELE 205 (333)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~ 205 (333)
+. ......+..+..+.+|+||+|||+.+++++++.+++++.+ ++.|++++||+...
T Consensus 52 ~~-------------------~~~~~~~~~~~~~~~D~viv~vKa~~~~~~l~~l~~~~~~---~t~iv~~qNG~g~~-- 107 (151)
T PF02558_consen 52 VQ-------------------PPIVISAPSADAGPYDLVIVAVKAYQLEQALQSLKPYLDP---NTTIVSLQNGMGNE-- 107 (151)
T ss_dssp EE-------------------EEEEESSHGHHHSTESEEEE-SSGGGHHHHHHHHCTGEET---TEEEEEESSSSSHH--
T ss_pred cc-------------------cccccCcchhccCCCcEEEEEecccchHHHHHHHhhccCC---CcEEEEEeCCCCcH--
Confidence 10 1222333323467899999999999999999999999987 78999999999975
Q ss_pred CCccCCCHHHHHHhHhCC
Q 019978 206 AVPRIITPTQMINRATGV 223 (333)
Q Consensus 206 ~~~~~~~~se~i~~~lg~ 223 (333)
+.+++.++.
T Consensus 108 ---------~~l~~~~~~ 116 (151)
T PF02558_consen 108 ---------EVLAEYFPR 116 (151)
T ss_dssp ---------HHHHCHSTG
T ss_pred ---------HHHHHHcCC
Confidence 567777753
No 60
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.24 E-value=1.7e-10 Score=112.56 Aligned_cols=189 Identities=14% Similarity=0.095 Sum_probs=122.1
Q ss_pred ceEEEECCCH--------------------HHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhH
Q 019978 44 LRIVGVGAGA--------------------WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (333)
Q Consensus 44 ~kI~IIGaG~--------------------mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~ 103 (333)
|||+|.|+|+ -|+++|..|+++ | |+|++|+|+++.++. +++ +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a-G-----~~V~v~Dr~~~~l~~---~~~----~----- 62 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA-G-----HDVVLAEPNRSILSE---ELW----K----- 62 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC-C-----CeEEEEECCHHHhhH---HHH----H-----
Confidence 6788888886 488999999999 8 999999998864321 000 0
Q ss_pred HHHhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHHHHHHh
Q 019978 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVFEEISR 182 (333)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~-~~~vl~~i~~ 182 (333)
.+.. ..+.++++..++++++|+||+++|+.. ++++++.+.+
T Consensus 63 ---------~l~~-----------------------------~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~ 104 (342)
T PRK12557 63 ---------KVED-----------------------------AGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNILP 104 (342)
T ss_pred ---------HHHH-----------------------------CCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHh
Confidence 0000 135566788888899999999999988 9999999999
Q ss_pred hhhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCC--------CCcEEEEcCCCchHHHhccCceeEEEeCCh
Q 019978 183 YWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP--------IENILYLGGPNIASEIYNKEYANARICGAE 254 (333)
Q Consensus 183 ~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~--------~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~ 254 (333)
.+++ +++|++++++ .+. ..++.+++.++.+ .++..+..+|++...+..+.++......++
T Consensus 105 ~L~~---g~IVId~ST~-~~~--------~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~~~ 172 (342)
T PRK12557 105 HLPE---NAVICNTCTV-SPV--------VLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELATE 172 (342)
T ss_pred hCCC---CCEEEEecCC-CHH--------HHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCCCH
Confidence 8876 6777776644 221 2224454544311 122333455566555554444422334467
Q ss_pred hhHHHHHHHhCCCCeEEEecCChhHHHHHHHHHHHH-HH-HHHHHhccC
Q 019978 255 KWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVY-AI-GAGMVAALT 301 (333)
Q Consensus 255 ~~~~~l~~ll~~~~~~v~~s~Di~gve~~~alkNv~-Ai-~~Gi~~gl~ 301 (333)
+..++++.+|+..+.+++..+. --....+.+-|++ ++ .+|+++.+-
T Consensus 173 e~~e~v~~LL~a~G~~v~~~~~-g~~~~vk~~~n~l~av~~a~~aE~~~ 220 (342)
T PRK12557 173 EQIEKCVELAESIGKEPYVVPA-DVVSAVADMGSLVTAVALSGVLDYYS 220 (342)
T ss_pred HHHHHHHHHHHHcCCEEEEeCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999998876652 2234445566653 23 256655543
No 61
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.24 E-value=4.7e-10 Score=107.63 Aligned_cols=181 Identities=18% Similarity=0.180 Sum_probs=111.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
+|+|+|||+|.||+++|..|+++ | ++|++|+++++.++++... +... +.++... .++...
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~-G-----~~V~v~d~~~~~~~~~~~~-----~~~~---l~~l~~~-g~~~~~----- 61 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA-G-----HEVRLWDADPAAAAAAPAY-----IAGR---LEDLAAF-DLLDGE----- 61 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC-C-----CeeEEEeCCHHHHHHHHHH-----HHHH---HHHHHHc-CCCchh-----
Confidence 46999999999999999999999 8 9999999998766543211 1110 0000000 011100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
. . +..+.++..+++++++++++|+|++++|+. ....++.++..+.++ +.++.|.++++
T Consensus 62 --~--~-------------~~~~~~i~~~~~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~---~~ii~ssts~~ 121 (308)
T PRK06129 62 --A--P-------------DAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPP---HAILASSTSAL 121 (308)
T ss_pred --h--H-------------HHHhcCeEEECcHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCC---cceEEEeCCCC
Confidence 0 0 001125778899988899999999999986 578888888887665 56666666654
Q ss_pred cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE---eCChhhHHHHHHHhCCCCeEEEec-CC
Q 019978 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI---CGAEKWRKPLAKFLRRPHFTVWDN-GD 276 (333)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~---~~~~~~~~~l~~ll~~~~~~v~~s-~D 276 (333)
.. ..+.+.+..+. ..+...|-.+.... +...++ .++++..+.+..+|...+.++... .|
T Consensus 122 ~~------------~~la~~~~~~~--~~~~~hp~~p~~~~---~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~ 184 (308)
T PRK06129 122 LA------------SAFTEHLAGRE--RCLVAHPINPPYLI---PVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRRE 184 (308)
T ss_pred CH------------HHHHHhcCCcc--cEEEEecCCCcccC---ceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Confidence 43 23555554321 23444444331111 111123 256678889999998888765543 56
Q ss_pred hhHH
Q 019978 277 LVTH 280 (333)
Q Consensus 277 i~gv 280 (333)
.-|.
T Consensus 185 ~~G~ 188 (308)
T PRK06129 185 IDGF 188 (308)
T ss_pred CccH
Confidence 5553
No 62
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.24 E-value=1.1e-10 Score=118.58 Aligned_cols=192 Identities=17% Similarity=0.114 Sum_probs=122.5
Q ss_pred CCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhh
Q 019978 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (333)
Q Consensus 39 ~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (333)
.+..+++|+|||.|.||+.||..|+++ | ++|++|+|++++++++... .. ..+.
T Consensus 2 ~~~~~~~IG~IGLG~MG~~mA~nL~~~-G-----~~V~V~NRt~~k~~~l~~~--------~~------------~~Ga- 54 (493)
T PLN02350 2 ASAALSRIGLAGLAVMGQNLALNIAEK-G-----FPISVYNRTTSKVDETVER--------AK------------KEGN- 54 (493)
T ss_pred CCCCCCCEEEEeeHHHHHHHHHHHHhC-C-----CeEEEECCCHHHHHHHHHh--------hh------------hcCC-
Confidence 456778999999999999999999999 8 9999999998876542210 00 0000
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCch-hHHHHHHHHHhhhhccCCCCEEE
Q 019978 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVII 194 (333)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~---aDlIIlaVps~-~~~~vl~~i~~~l~~~~~~~~Iv 194 (333)
..+....+++++++. +|+||++||.. .++++++.+.+.+.+ +.+||
T Consensus 55 ---------------------------~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~---G~iiI 104 (493)
T PLN02350 55 ---------------------------LPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEP---GDCII 104 (493)
T ss_pred ---------------------------cccccCCCHHHHHhcCCCCCEEEEECCCcHHHHHHHHHHHhhcCC---CCEEE
Confidence 012344667777765 99999999975 789999888888876 67888
Q ss_pred EeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH-HhccCceeEEEeCChhhHHHHHHHhCCCCeE---
Q 019978 195 SLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE-IYNKEYANARICGAEKWRKPLAKFLRRPHFT--- 270 (333)
Q Consensus 195 s~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e-v~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~--- 270 (333)
.+++.-...+ ....+.+.+ -| +.++..|....+ .++..+ .++++++++..++++.+|+..+-+
T Consensus 105 D~sT~~~~~t------~~~~~~l~~-~G-----i~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~pvL~~ia~k~~~ 171 (493)
T PLN02350 105 DGGNEWYENT------ERRIKEAAE-KG-----LLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIEDILEKVAAQVDD 171 (493)
T ss_pred ECCCCCHHHH------HHHHHHHHH-cC-----CeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHHHHHHHHhhhcCC
Confidence 8765543331 111222221 12 234444444322 233334 456788888889999988865432
Q ss_pred ---EEecCChhHHHHHHHHHHH--HHHHHHHHhcc
Q 019978 271 ---VWDNGDLVTHEVMGGLKNV--YAIGAGMVAAL 300 (333)
Q Consensus 271 ---v~~s~Di~gve~~~alkNv--~Ai~~Gi~~gl 300 (333)
+.+..+.=.-...+...|. ++...++++++
T Consensus 172 ~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~ 206 (493)
T PLN02350 172 GPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAY 206 (493)
T ss_pred CCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444554333566777775 34445555554
No 63
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.22 E-value=4.8e-10 Score=112.77 Aligned_cols=159 Identities=19% Similarity=0.270 Sum_probs=107.8
Q ss_pred ceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 44 ~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
|||+||| +|.||.++|..|.+. | ++|++|+|+++.+.++. .+
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~-G-----~~V~v~~r~~~~~~~~a--------~~----------------------- 43 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK-G-----FEVIVTGRDPKKGKEVA--------KE----------------------- 43 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC-C-----CEEEEEECChHHHHHHH--------HH-----------------------
Confidence 6999998 799999999999998 8 89999999876432110 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~ 202 (333)
..+.++++.++++.++|+||+|+|...+.++++++.+++++ +++|++++.. .
T Consensus 44 -----------------------~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~~l~~~l~~---~~iViDvsSv-K- 95 (437)
T PRK08655 44 -----------------------LGVEYANDNIDAAKDADIVIISVPINVTEDVIKEVAPHVKE---GSLLMDVTSV-K- 95 (437)
T ss_pred -----------------------cCCeeccCHHHHhccCCEEEEecCHHHHHHHHHHHHhhCCC---CCEEEEcccc-c-
Confidence 02334567777889999999999999999999999998887 7888876531 1
Q ss_pred cccCCccCCCHHHHHHhHhCCCCCcEE---EEcCCCchHHHhccCceeEEEe--CChhhHHHHHHHhCCCCeEEEecCCh
Q 019978 203 ELEAVPRIITPTQMINRATGVPIENIL---YLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDL 277 (333)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~~~---vl~GP~~a~ev~~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v~~s~Di 277 (333)
..+.+.+.+.++.. ..+. -+.||+.+ ...+.....+.. .+++..+.++++|+..|.+++..+.-
T Consensus 96 --------~~~~~~l~~~~~~~-~~~V~~HPmaGp~~~--~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~~~~e 164 (437)
T PRK08655 96 --------ERPVEAMEEYAPEG-VEILPTHPMFGPRTP--SLKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVIVTSPE 164 (437)
T ss_pred --------HHHHHHHHHhcCCC-CEEEEcCCCCCCCCc--ccCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHH
Confidence 12234455555421 1111 12356554 233433332222 34567899999999999988865443
Q ss_pred h
Q 019978 278 V 278 (333)
Q Consensus 278 ~ 278 (333)
.
T Consensus 165 ~ 165 (437)
T PRK08655 165 E 165 (437)
T ss_pred H
Confidence 3
No 64
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.22 E-value=3e-10 Score=109.90 Aligned_cols=176 Identities=19% Similarity=0.178 Sum_probs=111.1
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
+.+||+|||+|.||+.+|..++.. | ++|++|+++++.+++... . +... ++++....
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~a-G-----~~V~l~D~~~~~~~~~~~-~----i~~~---~~~~~~~~---------- 61 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAH-G-----LDVVAWDPAPGAEAALRA-N----VANA---WPALERQG---------- 61 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-H----HHHH---HHHHHHcC----------
Confidence 357999999999999999999999 8 999999999876654321 1 1111 11111010
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kG 199 (333)
+.++ ....++..++++++++.+||+|+.++|.. ...++++++.+++++ +++|.|.|.+
T Consensus 62 ----~~~~-------------~~~~~i~~~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~---~aIlaSnTS~ 121 (321)
T PRK07066 62 ----LAPG-------------ASPARLRFVATIEACVADADFIQESAPEREALKLELHERISRAAKP---DAIIASSTSG 121 (321)
T ss_pred ----CChh-------------hHHhhceecCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCC---CeEEEECCCc
Confidence 0000 01126778889999999999999999986 588888999999887 7777777766
Q ss_pred CcccccCCccCCCHHHHHHhHhCCCCCcEEEE--cCCCchHHHhccCceeEEE-e--CChhhHHHHHHHhCCCCeEEE-e
Q 019978 200 VEAELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARI-C--GAEKWRKPLAKFLRRPHFTVW-D 273 (333)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl--~GP~~a~ev~~~~~~~~~~-~--~~~~~~~~l~~ll~~~~~~v~-~ 273 (333)
+... + +.+.+..+ ..+... .-|.+.. +..-++ + .+++..+.+.+++...|..+. +
T Consensus 122 l~~s-----------~-la~~~~~p-~R~~g~HffnP~~~~------pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v 182 (321)
T PRK07066 122 LLPT-----------D-FYARATHP-ERCVVGHPFNPVYLL------PLVEVLGGERTAPEAVDAAMGIYRALGMRPLHV 182 (321)
T ss_pred cCHH-----------H-HHHhcCCc-ccEEEEecCCccccC------ceEEEeCCCCCCHHHHHHHHHHHHHcCCEeEec
Confidence 6543 2 44445433 222221 2222211 111122 1 245677888888888775554 3
Q ss_pred cCChhHH
Q 019978 274 NGDLVTH 280 (333)
Q Consensus 274 s~Di~gv 280 (333)
..|.-|-
T Consensus 183 ~kd~pGF 189 (321)
T PRK07066 183 RKEVPGF 189 (321)
T ss_pred CCCCccH
Confidence 3566653
No 65
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.22 E-value=2.2e-10 Score=108.37 Aligned_cols=170 Identities=13% Similarity=0.077 Sum_probs=103.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
|||+|||+|.||.++|..|.++ | ++|++|+++++.++++.. . +.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~-g-----~~V~~~d~~~~~~~~a~~--------~----------------g~------ 44 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL-G-----HTVYGVSRRESTCERAIE--------R----------------GL------ 44 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHH--------C----------------CC------
Confidence 6899999999999999999998 8 999999998865432110 0 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~ 203 (333)
-...+++. +++.++|+||+|+|...+.++++++.+++++ +++| +-+.++...
T Consensus 45 -----------------------~~~~~~~~-~~~~~aDlVilavp~~~~~~~~~~l~~~l~~---~~ii-~d~~Svk~~ 96 (279)
T PRK07417 45 -----------------------VDEASTDL-SLLKDCDLVILALPIGLLLPPSEQLIPALPP---EAIV-TDVGSVKAP 96 (279)
T ss_pred -----------------------cccccCCH-hHhcCCCEEEEcCCHHHHHHHHHHHHHhCCC---CcEE-EeCcchHHH
Confidence 00122344 3578999999999999999999999998876 5544 444344332
Q ss_pred ccCCccCCCHHHHHHhHhCCCCCcEE--EEcCCCc-----hH-HHhccCceeEEEe--CChhhHHHHHHHhCCCCeEEEe
Q 019978 204 LEAVPRIITPTQMINRATGVPIENIL--YLGGPNI-----AS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWD 273 (333)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~~~--vl~GP~~-----a~-ev~~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v~~ 273 (333)
.+++........+. -+.||.. +. ....+.+..++.. .+++..+.++.+++..|.++..
T Consensus 97 ------------~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~~v~ 164 (279)
T PRK07417 97 ------------IVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSLGSKIYT 164 (279)
T ss_pred ------------HHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 22222111001000 1223321 11 1234444433332 3456788899999998888765
Q ss_pred cCChhHHHHHHHHHHH
Q 019978 274 NGDLVTHEVMGGLKNV 289 (333)
Q Consensus 274 s~Di~gve~~~alkNv 289 (333)
.+.-...+..+..-+.
T Consensus 165 ~~~~~hD~~~a~~shl 180 (279)
T PRK07417 165 ADPEEHDRAVALISHL 180 (279)
T ss_pred cCHHHHHHHHHHHcch
Confidence 5544444444443343
No 66
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.21 E-value=2.6e-10 Score=103.31 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=110.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
||+++|+|+|++|+++|..|++. | |+|++-+|+.+...+.. .+ ++.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a-g-----~eV~igs~r~~~~~~a~--------a~-------------~l~------- 46 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA-G-----HEVIIGSSRGPKALAAA--------AA-------------ALG------- 46 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC-C-----CeEEEecCCChhHHHHH--------HH-------------hhc-------
Confidence 68999999999999999999999 8 99999977665432110 00 110
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~ 202 (333)
..+.. .++++|++.+|+||++||-..+.+++++++..+. +++||++++.+..
T Consensus 47 -----------------------~~i~~-~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~----~KIvID~tnp~~~ 98 (211)
T COG2085 47 -----------------------PLITG-GSNEDAAALADVVVLAVPFEAIPDVLAELRDALG----GKIVIDATNPIEV 98 (211)
T ss_pred -----------------------ccccc-CChHHHHhcCCEEEEeccHHHHHhHHHHHHHHhC----CeEEEecCCCccc
Confidence 02322 3456788999999999999999999999998776 5799999998542
Q ss_pred ----cc-cCCccCCCHHHHHHhHhCCCCCcEEEEcCCCc--hHHHhcc----CceeEEEeCCh-hhHHHHHHHhCCCCeE
Q 019978 203 ----EL-EAVPRIITPTQMINRATGVPIENILYLGGPNI--ASEIYNK----EYANARICGAE-KWRKPLAKFLRRPHFT 270 (333)
Q Consensus 203 ----~~-~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~--a~ev~~~----~~~~~~~~~~~-~~~~~l~~ll~~~~~~ 270 (333)
.. ...+.....++.++++++... ++..-++ +..+... .-+.+.+|+|+ +..+.+.++.+..||+
T Consensus 99 ~~~~~~~~~~~~~~saae~va~~lp~ak----VVkAFn~i~a~~l~~~~~~~~~~~v~vagDD~~Ak~~v~~L~~~iG~~ 174 (211)
T COG2085 99 NGEPGDLYLVPSEGSAAEIVAKLLPGAK----VVKAFNTIPAAVLADLAKPGGRRDVLVAGDDAEAKAVVAELAEDIGFR 174 (211)
T ss_pred cCCccccccCCCCCcHHHHHHHHCCCcc----hhhhhcccCHHHhccCCCcCCceeEEEecCcHHHHHHHHHHHHhcCcc
Confidence 11 112345677899999987431 2333333 1112111 11223346554 5677888888888887
Q ss_pred EE
Q 019978 271 VW 272 (333)
Q Consensus 271 v~ 272 (333)
..
T Consensus 175 ~l 176 (211)
T COG2085 175 PL 176 (211)
T ss_pred ee
Confidence 76
No 67
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.20 E-value=3.4e-10 Score=106.75 Aligned_cols=169 Identities=14% Similarity=0.180 Sum_probs=103.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
|||+|||+|.||+++|..|.++ |. . ++|+.|+|+++.++++. + . +
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~-g~--~-~~v~~~d~~~~~~~~~~---------~--------------~-g------- 45 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK-GL--I-SKVYGYDHNELHLKKAL---------E--------------L-G------- 45 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc-CC--C-CEEEEEcCCHHHHHHHH---------H--------------C-C-------
Confidence 6899999999999999999988 71 0 36888888876543210 0 0 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~ 203 (333)
-+....+.+++. ++|+||+|||++.+.++++++.+ +++ +++|+.+ |....
T Consensus 46 -----------------------~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~~l~~-l~~---~~iv~d~--gs~k~ 95 (275)
T PRK08507 46 -----------------------LVDEIVSFEELK-KCDVIFLAIPVDAIIEILPKLLD-IKE---NTTIIDL--GSTKA 95 (275)
T ss_pred -----------------------CCcccCCHHHHh-cCCEEEEeCcHHHHHHHHHHHhc-cCC---CCEEEEC--ccchH
Confidence 011123455544 59999999999999999999988 776 6777653 22211
Q ss_pred ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCC---------chH-HHhccCceeEEEe--CChhhHHHHHHHhCCCCeEE
Q 019978 204 LEAVPRIITPTQMINRATGVPIENILYLGGPN---------IAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTV 271 (333)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~---------~a~-ev~~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v 271 (333)
.+.+.+.+..+ .. .+-..|. .+. ...++..+..+.. .+++..+.++.+|+..|.++
T Consensus 96 --------~i~~~~~~~~~---~~-~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~ 163 (275)
T PRK08507 96 --------KIIESVPKHIR---KN-FIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLGMRI 163 (275)
T ss_pred --------HHHHHHHHhcC---CC-EEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhCCEE
Confidence 12233333221 11 1222244 332 2334444433322 34557889999999999888
Q ss_pred EecCChhHHHHHHHHHHH
Q 019978 272 WDNGDLVTHEVMGGLKNV 289 (333)
Q Consensus 272 ~~s~Di~gve~~~alkNv 289 (333)
...+.-..-+..+..-++
T Consensus 164 ~~~~~~~hD~~~a~vs~l 181 (275)
T PRK08507 164 VYMDAKEHDLHAAYISHL 181 (275)
T ss_pred EEeCHHHHHHHHHHHhHH
Confidence 776665555555544444
No 68
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.18 E-value=1e-09 Score=104.50 Aligned_cols=120 Identities=20% Similarity=0.280 Sum_probs=83.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
+.||+|||+|.||..+|..++.+ | ++|++|+++++.+++... .+.+.+ ++..+... +...
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~-G-----~~V~l~d~~~~~~~~~~~-~i~~~~-------~~~~~~g~-~~~~----- 64 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA-G-----VDVLVFETTEELATAGRN-RIEKSL-------ERAVSRGK-LTER----- 64 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHH-HHHHHH-------HHHHhccc-CChh-----
Confidence 45999999999999999999999 8 999999999987765321 111111 11111111 1100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhh-hccCCCCEEEEeeec
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYW-KERITVPVIISLAKG 199 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l-~~~~~~~~Ivs~~kG 199 (333)
. + +..+.++++++|++ ++.+||+||.|+|.+ ...+++.++.+++ ++ +++++|.+.+
T Consensus 65 --~--~-------------~~~~~~l~~~~~~~-~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~---~~il~snTS~ 123 (286)
T PRK07819 65 --E--R-------------DAALARLRFTTDLG-DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDP---DAVLASNTSS 123 (286)
T ss_pred --h--H-------------HHHHhCeEeeCCHH-HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 0 0 00123688889994 589999999999986 5778889999887 66 7888888877
Q ss_pred Cccc
Q 019978 200 VEAE 203 (333)
Q Consensus 200 i~~~ 203 (333)
+...
T Consensus 124 ~~~~ 127 (286)
T PRK07819 124 IPIM 127 (286)
T ss_pred CCHH
Confidence 6654
No 69
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.17 E-value=5e-10 Score=106.97 Aligned_cols=179 Identities=15% Similarity=0.119 Sum_probs=107.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
|||+|||+|.||.+||..|.++ | ++|++|+|++. .+++ .+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~-G-----~~v~v~~~~~~-~~~~---------~~------------------------ 40 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA-G-----HQLHVTTIGPV-ADEL---------LS------------------------ 40 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC-C-----CeEEEEeCCHh-HHHH---------HH------------------------
Confidence 5899999999999999999999 8 99999999863 2211 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHH---HHhhhhccCCCCEEEEeeec
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE---ISRYWKERITVPVIISLAKG 199 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~~---i~~~l~~~~~~~~Ivs~~kG 199 (333)
.......++.++++.+|+||+++|.. .+++++.. +.+.+.+ ++++|.++ .
T Consensus 41 ----------------------~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~---g~ivvd~s-T 94 (292)
T PRK15059 41 ----------------------LGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLK---GKTIVDMS-S 94 (292)
T ss_pred ----------------------cCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCC---CCEEEECC-C
Confidence 01223456777788999999999976 67777633 3333444 56777654 3
Q ss_pred CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHh--ccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCCh
Q 019978 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY--NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (333)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~--~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di 277 (333)
+.+.+ .+.+.+.+.+ .|. .++..|....... .+..+ ++++++++..++++.+|+..+-++++-.+.
T Consensus 95 ~~p~~-----~~~~~~~~~~-~G~-----~~vdaPVsGg~~~a~~g~l~-~~~gG~~~~~~~~~p~l~~~g~~~~~~G~~ 162 (292)
T PRK15059 95 ISPIE-----TKRFARQVNE-LGG-----DYLDAPVSGGEIGAREGTLS-IMVGGDEAVFERVKPLFELLGKNITLVGGN 162 (292)
T ss_pred CCHHH-----HHHHHHHHHH-cCC-----CEEEecCCCCHHHHhcCcEE-EEEcCCHHHHHHHHHHHHHHcCCcEEeCCc
Confidence 33331 1112222222 232 1333444332222 23222 345777888899999998776666555554
Q ss_pred hHHHHHHHHHHHHHH--HHHHHhcc
Q 019978 278 VTHEVMGGLKNVYAI--GAGMVAAL 300 (333)
Q Consensus 278 ~gve~~~alkNv~Ai--~~Gi~~gl 300 (333)
-.....+...|.+.. ..++.+++
T Consensus 163 G~g~~~Kl~~N~l~~~~~~a~~Ea~ 187 (292)
T PRK15059 163 GDGQTCKVANQIIVALNIEAVSEAL 187 (292)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666676432 23444443
No 70
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.15 E-value=4.5e-10 Score=113.77 Aligned_cols=185 Identities=14% Similarity=0.083 Sum_probs=116.3
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcCC
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (333)
+|+|||+|.||.+||..|+++ | ++|++|+|++++++++.. . +..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-G-----~~V~v~drt~~~~~~l~~--------~-------------~~~g-------- 45 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-G-----FTVSVYNRTPEKTDEFLA--------E-------------HAKG-------- 45 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHh--------h-------------ccCC--------
Confidence 489999999999999999999 8 999999999987654221 0 0000
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHh---cCCCEEEEecCc-hhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV---WDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~---~~aDlIIlaVps-~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
..+...+++++.+ +.+|+||+++|+ ..++++++++.+++.+ +.+||.+++..
T Consensus 46 ---------------------~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi~~l~~~L~~---g~iIID~gns~ 101 (467)
T TIGR00873 46 ---------------------KKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVINQLLPLLEK---GDIIIDGGNSH 101 (467)
T ss_pred ---------------------CCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHHHHHHhhCCC---CCEEEECCCcC
Confidence 0122334455543 578999999998 6899999999999877 78898888766
Q ss_pred cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchH-HHhccCceeEEEeCChhhHHHHHHHhCCCCeE------EEe
Q 019978 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS-EIYNKEYANARICGAEKWRKPLAKFLRRPHFT------VWD 273 (333)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~-ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~------v~~ 273 (333)
...+ . +..++... ..+.++.+|...- +.++..+ ..+++++++..++++.+|...+-+ +.+
T Consensus 102 ~~~t-----~----~~~~~l~~---~gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~~ia~~~~~~~~~~~ 168 (467)
T TIGR00873 102 YPDT-----E----RRYKELKA---KGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQKIAAKVDGEPCCTW 168 (467)
T ss_pred HHHH-----H----HHHHHHHh---cCCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHHHHhhhcCCCCceEE
Confidence 5542 1 11122111 1133455554432 2333334 345778888888898888865433 123
Q ss_pred cCChhHHHHHHHHHHH--HHHHHHHHhccC
Q 019978 274 NGDLVTHEVMGGLKNV--YAIGAGMVAALT 301 (333)
Q Consensus 274 s~Di~gve~~~alkNv--~Ai~~Gi~~gl~ 301 (333)
..+.=.-...+..-|. |+...++++++.
T Consensus 169 ~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ 198 (467)
T TIGR00873 169 IGPDGAGHYVKMVHNGIEYGDMQLICEAYD 198 (467)
T ss_pred ECCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333223566666675 344455555543
No 71
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.14 E-value=2.3e-09 Score=102.71 Aligned_cols=163 Identities=21% Similarity=0.196 Sum_probs=100.7
Q ss_pred CCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhh
Q 019978 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (333)
Q Consensus 39 ~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (333)
++...+||+|||+|.||.++|..|.+. |. .++|++|+|+++..+.+. + . +.
T Consensus 2 ~~~~~~~I~IIG~G~mG~sla~~l~~~-g~---~~~V~~~dr~~~~~~~a~---------~--------------~-g~- 52 (307)
T PRK07502 2 SAPLFDRVALIGIGLIGSSLARAIRRL-GL---AGEIVGADRSAETRARAR---------E--------------L-GL- 52 (307)
T ss_pred CccCCcEEEEEeeCHHHHHHHHHHHhc-CC---CcEEEEEECCHHHHHHHH---------h--------------C-CC-
Confidence 444557999999999999999999988 71 038999999886543211 0 0 00
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (333)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~k 198 (333)
.....++++++++++|+||+|+|...+.++++++.+++++ +++|+.+ .
T Consensus 53 ----------------------------~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~~l~~~l~~---~~iv~dv-g 100 (307)
T PRK07502 53 ----------------------------GDRVTTSAAEAVKGADLVILCVPVGASGAVAAEIAPHLKP---GAIVTDV-G 100 (307)
T ss_pred ----------------------------CceecCCHHHHhcCCCEEEECCCHHHHHHHHHHHHhhCCC---CCEEEeC-c
Confidence 1123355667788999999999999999999999888876 5655443 2
Q ss_pred cCcccccCCccCCCHHHHHHhHhCCCCCcEEEEc----------CCCch-HHHhccCceeEEE--eCChhhHHHHHHHhC
Q 019978 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLG----------GPNIA-SEIYNKEYANARI--CGAEKWRKPLAKFLR 265 (333)
Q Consensus 199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~----------GP~~a-~ev~~~~~~~~~~--~~~~~~~~~l~~ll~ 265 (333)
++... +.+.+.+.++.. +.++. ||..+ .++..+.++.++. ..+++..+.+.++|+
T Consensus 101 s~k~~---------~~~~~~~~~~~~---~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~ 168 (307)
T PRK07502 101 SVKAS---------VIAAMAPHLPEG---VHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAVARLTAFWR 168 (307)
T ss_pred cchHH---------HHHHHHHhCCCC---CeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 22221 112233333211 11222 22222 1333444443332 234567888999999
Q ss_pred CCCeEEEec
Q 019978 266 RPHFTVWDN 274 (333)
Q Consensus 266 ~~~~~v~~s 274 (333)
..|.+++..
T Consensus 169 ~lG~~~~~~ 177 (307)
T PRK07502 169 ALGARVEEM 177 (307)
T ss_pred HcCCEEEEc
Confidence 988877653
No 72
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.14 E-value=1.1e-09 Score=107.05 Aligned_cols=196 Identities=18% Similarity=0.171 Sum_probs=125.7
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
++|+|||.|.+|..+|..++++ | ++|+.+|.++.++++++ +++ .|....
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~-G-----~~ViG~DIn~~~Vd~ln---------~G~----------~~i~e~------ 58 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA-G-----FKVIGVDINQKKVDKLN---------RGE----------SYIEEP------ 58 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc-C-----CceEeEeCCHHHHHHHh---------CCc----------ceeecC------
Confidence 8999999999999999999999 8 99999999998887654 332 122211
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------hHHHHHHHHHhhhhccCCCCEE
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI 193 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~----------~~~~vl~~i~~~l~~~~~~~~I 193 (333)
+-+|+++.-+.. .++++|+|.++ +..||++|+|||.. ++++..+.|++++++ +.+|
T Consensus 59 ---~~~~~v~~~v~~-------g~lraTtd~~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~k---G~LV 124 (436)
T COG0677 59 ---DLDEVVKEAVES-------GKLRATTDPEE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKK---GDLV 124 (436)
T ss_pred ---cHHHHHHHHHhc-------CCceEecChhh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCC---CCEE
Confidence 011222221111 36899999987 56999999999973 789999999999997 5544
Q ss_pred EEeeecCcccccCCccCCCHHHHHHhH-hCCC-CCcEEEEcCCCchHHHh--ccCcee-EEEeC-ChhhHHHHHHHhCCC
Q 019978 194 ISLAKGVEAELEAVPRIITPTQMINRA-TGVP-IENILYLGGPNIASEIY--NKEYAN-ARICG-AEKWRKPLAKFLRRP 267 (333)
Q Consensus 194 vs~~kGi~~~~~~~~~~~~~se~i~~~-lg~~-~~~~~vl~GP~~a~ev~--~~~~~~-~~~~~-~~~~~~~l~~ll~~~ 267 (333)
| +-+...++ +.+.+...+.+. .|.. ...+.+-.-|....... ...... -++++ ++...+..+.++++.
T Consensus 125 I-lEST~~PG-----TTe~v~~plle~~sgL~~~~Df~laysPERv~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~i 198 (436)
T COG0677 125 I-LESTTPPG-----TTEEVVKPLLEERSGLKFGEDFYLAYSPERVLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTI 198 (436)
T ss_pred E-EecCCCCC-----cHHHHHHHHHhhcCCCcccceeeEeeCccccCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHh
Confidence 4 44455555 333333334443 2221 13344445554432111 111111 13343 455666666666654
Q ss_pred CeEEEecCChhHHHHHHHHHHHH
Q 019978 268 HFTVWDNGDLVTHEVMGGLKNVY 290 (333)
Q Consensus 268 ~~~v~~s~Di~gve~~~alkNv~ 290 (333)
--.+..-+|...+|.++.+-|++
T Consensus 199 v~~~~~vts~~tAEm~Kl~EN~f 221 (436)
T COG0677 199 VEGVIPVTSARTAEMVKLTENTF 221 (436)
T ss_pred eEEEEEcCChHHHHHHHHHhhhh
Confidence 44577899999999999998873
No 73
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.09 E-value=1.9e-09 Score=114.60 Aligned_cols=121 Identities=12% Similarity=0.179 Sum_probs=87.1
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
...||+|||+|.||..||..++.+ | ++|++|+++++.+++... .+.+.+ ++...... +...
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~l-------~~~~~~g~-~~~~---- 372 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASK-G-----VPVIMKDINQKALDLGMT-EAAKLL-------NKQVERGK-IDGA---- 372 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHH-------HHHHHcCC-CChh----
Confidence 357899999999999999999999 8 999999999987654221 111111 11111111 1100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kG 199 (333)
. + +..+.++++++|++ ++.+||+||.|||.+ ...+++.++.+++++ ++++.|.|.+
T Consensus 373 ---~--~-------------~~~~~~i~~~~~~~-~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~---~~ilasNTSs 430 (715)
T PRK11730 373 ---K--M-------------AGVLSSIRPTLDYA-GFERVDVVVEAVVENPKVKAAVLAEVEQKVRE---DTILASNTST 430 (715)
T ss_pred ---h--H-------------HHHHhCeEEeCCHH-HhcCCCEEEecccCcHHHHHHHHHHHHhhCCC---CcEEEEcCCC
Confidence 0 0 01123788999985 579999999999986 689999999999998 7888888888
Q ss_pred Cccc
Q 019978 200 VEAE 203 (333)
Q Consensus 200 i~~~ 203 (333)
++..
T Consensus 431 l~i~ 434 (715)
T PRK11730 431 ISIS 434 (715)
T ss_pred CCHH
Confidence 7764
No 74
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.09 E-value=2.5e-10 Score=109.44 Aligned_cols=121 Identities=24% Similarity=0.337 Sum_probs=88.4
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
..+||+|||+|.||+.+|..++.. | ++|+++|++++.+++... .+... ++++....+ +...
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~-G-----~~V~l~D~~~~~~~~~~~-----~i~~~---l~k~~~~g~-l~~~---- 62 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALA-G-----YDVVLKDISPEALERALA-----YIEKN---LEKLVEKGK-LTEE---- 62 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhc-C-----CceEEEeCCHHHHHHHHH-----HHHHH---HHHHHhcCC-CChh----
Confidence 357999999999999999999998 8 999999999877665332 11111 222211111 1110
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kG 199 (333)
. .+..+.+++.++++. ++.+||+||.+|+.. ..+++++++..+.++ ++++-|.|++
T Consensus 63 ---~---------------~~~~l~~i~~~~~~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~---~aIlASNTSs 120 (307)
T COG1250 63 ---E---------------ADAALARITPTTDLA-ALKDADLVIEAVVEDLELKKQVFAELEALAKP---DAILASNTSS 120 (307)
T ss_pred ---h---------------HHHHHhhccccCchh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCC---CcEEeeccCC
Confidence 0 011234788888886 689999999999986 689999999999988 8899999999
Q ss_pred Cccc
Q 019978 200 VEAE 203 (333)
Q Consensus 200 i~~~ 203 (333)
++..
T Consensus 121 l~it 124 (307)
T COG1250 121 LSIT 124 (307)
T ss_pred CCHH
Confidence 8875
No 75
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.08 E-value=6.4e-09 Score=106.41 Aligned_cols=179 Identities=18% Similarity=0.191 Sum_probs=109.1
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
+.+||+|||+|.||+.||..++++ | ++|++|+++++.+++... . +... ++++..... +...
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~a-G-----~~V~l~d~~~e~l~~~~~-~----i~~~---l~~~~~~G~-~~~~---- 64 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASA-G-----HQVLLYDIRAEALARAIA-G----IEAR---LNSLVTKGK-LTAE---- 64 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-H----HHHH---HHHHHhcCC-CCHH----
Confidence 457999999999999999999999 8 999999999987764321 1 1111 111111110 1000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kG 199 (333)
.+++ .+.++..++++++ +.+||+||.|+|.. ..+.++.++.+++++ ++++.|.+.+
T Consensus 65 -----~~~~-------------~~~~i~~~~~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~---~~IlasnTSt 122 (503)
T TIGR02279 65 -----ECER-------------TLKRLIPVTDLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPA---DTIIASNTSS 122 (503)
T ss_pred -----HHHH-------------HHhccEEeCCHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCC---CeEEEECCCC
Confidence 0000 1136888899865 67999999999974 577788889888887 6777767766
Q ss_pred CcccccCCccCCCHHHHHHhHhCCCCCcEE-EEcCCCchHHHhccCceeEEEeC---ChhhHHHHHHHhCCCCeEEEecC
Q 019978 200 VEAELEAVPRIITPTQMINRATGVPIENIL-YLGGPNIASEIYNKEYANARICG---AEKWRKPLAKFLRRPHFTVWDNG 275 (333)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~-vl~GP~~a~ev~~~~~~~~~~~~---~~~~~~~l~~ll~~~~~~v~~s~ 275 (333)
+... + +.+.+..+...+. -..-|.... +-..++.+ +++.++.+..++...+-.+....
T Consensus 123 l~i~-----------~-iA~~~~~p~r~~G~HFf~Papv~------~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~ 184 (503)
T TIGR02279 123 LSIT-----------A-IAAGLARPERVAGLHFFNPAPVM------ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCH 184 (503)
T ss_pred CCHH-----------H-HHHhcCcccceEEEeccCccccC------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeC
Confidence 6653 2 4444433211110 112222211 11113333 56778888888887776666556
Q ss_pred ChhH
Q 019978 276 DLVT 279 (333)
Q Consensus 276 Di~g 279 (333)
|.-|
T Consensus 185 d~pG 188 (503)
T TIGR02279 185 STPG 188 (503)
T ss_pred CCCC
Confidence 6555
No 76
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.07 E-value=4.1e-09 Score=98.15 Aligned_cols=116 Identities=22% Similarity=0.172 Sum_probs=89.4
Q ss_pred eEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCc
Q 019978 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (333)
Q Consensus 148 i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~ 227 (333)
+.+.++.+++++++|+||+|||++.++++++++.+++.+ +++|||+++|+..+ .+++.++.. .
T Consensus 31 ~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~---~~~ivS~~agi~~~------------~l~~~~~~~--~ 93 (245)
T TIGR00112 31 IVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGK---DKLLISIAAGVTLE------------KLSQLLGGT--R 93 (245)
T ss_pred cEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccC---CCEEEEecCCCCHH------------HHHHHcCCC--C
Confidence 344567777788999999999999999999999987755 68999999999975 367778632 2
Q ss_pred EEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecCChhHH
Q 019978 228 ILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (333)
Q Consensus 228 ~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~Di~gv 280 (333)
..++.+||.+..+.++...+... ..+++..+.++++|+..|..+++.++.+..
T Consensus 94 ~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~ 147 (245)
T TIGR00112 94 RVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDA 147 (245)
T ss_pred eEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcch
Confidence 46889999999988875443221 224467889999999999888777665553
No 77
>PLN02858 fructose-bisphosphate aldolase
Probab=99.06 E-value=3.8e-09 Score=118.83 Aligned_cols=192 Identities=14% Similarity=0.074 Sum_probs=119.7
Q ss_pred HhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccc
Q 019978 34 RLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAY 113 (333)
Q Consensus 34 ~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~ 113 (333)
+...|.....++|+|||.|+||.+||..|++. | ++|++|+|++++++++..
T Consensus 315 ~~~~~~~~~~~~IGfIGlG~MG~~mA~~L~~~-G-----~~V~v~dr~~~~~~~l~~----------------------- 365 (1378)
T PLN02858 315 KQITMQAKPVKRIGFIGLGAMGFGMASHLLKS-N-----FSVCGYDVYKPTLVRFEN----------------------- 365 (1378)
T ss_pred HHhhccccCCCeEEEECchHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHHH-----------------------
Confidence 34445555678999999999999999999999 8 999999999865542110
Q ss_pred cchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-chhHHHHHH---HHHhhhhccCC
Q 019978 114 LKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFE---EISRYWKERIT 189 (333)
Q Consensus 114 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVp-s~~~~~vl~---~i~~~l~~~~~ 189 (333)
. .....+++.++++++|+||+++| +..+++++. .+...+.+
T Consensus 366 -~-------------------------------Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~--- 410 (1378)
T PLN02858 366 -A-------------------------------GGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPA--- 410 (1378)
T ss_pred -c-------------------------------CCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCC---
Confidence 0 12234677788899999999999 677888873 34444454
Q ss_pred CCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH--HhccCceeEEEeCChhhHHHHHHHhCCC
Q 019978 190 VPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--IYNKEYANARICGAEKWRKPLAKFLRRP 267 (333)
Q Consensus 190 ~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e--v~~~~~~~~~~~~~~~~~~~l~~ll~~~ 267 (333)
++++|.++ .+.+++ .+.+.+.+.+. +. .+.++-.|..... ...+..+ .+++++++..++++.+|+..
T Consensus 411 g~ivVd~S-TvsP~~-----~~~la~~l~~~-g~---g~~~lDAPVsGg~~~A~~G~L~-imvgG~~~~~~~~~plL~~l 479 (1378)
T PLN02858 411 GASIVLSS-TVSPGF-----VIQLERRLENE-GR---DIKLVDAPVSGGVKRAAMGTLT-IMASGTDEALKSAGSVLSAL 479 (1378)
T ss_pred CCEEEECC-CCCHHH-----HHHHHHHHHhh-CC---CcEEEEccCCCChhhhhcCCce-EEEECCHHHHHHHHHHHHHH
Confidence 66777654 333331 11222222221 11 1233444433221 1233333 35677778888999999876
Q ss_pred CeEEEe-cCChhHHHHHHHHHHHHHH--HHHHHhcc
Q 019978 268 HFTVWD-NGDLVTHEVMGGLKNVYAI--GAGMVAAL 300 (333)
Q Consensus 268 ~~~v~~-s~Di~gve~~~alkNv~Ai--~~Gi~~gl 300 (333)
+-++++ ..+.-..+..+.+.|.+.. .+++.+++
T Consensus 480 g~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal 515 (1378)
T PLN02858 480 SEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAM 515 (1378)
T ss_pred hCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666654 5677667888888887433 24444443
No 78
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.06 E-value=4.2e-09 Score=111.73 Aligned_cols=121 Identities=15% Similarity=0.215 Sum_probs=85.9
Q ss_pred CCceEEEECCCHHHHHHHHHHH-HhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La-~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
..+||+|||+|.||+.+|..++ .. | ++|++|+.+++.+++... .+.+. +++.......-+..
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~-------l~~~~~~~~~~~~~--- 365 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKA-G-----IPVRIKDINPQGINNALK-YAWKL-------LDKGVKRRHMTPAE--- 365 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHc-C-----CeEEEEeCCHHHHHHHHH-HHHHH-------HHHHHHcCCCCHHH---
Confidence 4578999999999999999998 57 8 999999999886654321 11111 11111111110000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAK 198 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~k 198 (333)
+ +..+.+++.++|++ ++.+||+||.|+|.. ...+++.++.+++++ ++++.|.|.
T Consensus 366 -------~-------------~~~~~~i~~~~~~~-~~~~adlViEav~E~l~~K~~v~~~l~~~~~~---~~ilasnTS 421 (699)
T TIGR02440 366 -------R-------------DNQMALITGTTDYR-GFKDVDIVIEAVFEDLALKHQMVKDIEQECAA---HTIFASNTS 421 (699)
T ss_pred -------H-------------HHHHcCeEEeCChH-HhccCCEEEEeccccHHHHHHHHHHHHhhCCC---CcEEEeCCC
Confidence 0 01123788999985 689999999999986 689999999999988 888888888
Q ss_pred cCccc
Q 019978 199 GVEAE 203 (333)
Q Consensus 199 Gi~~~ 203 (333)
+++..
T Consensus 422 ~l~i~ 426 (699)
T TIGR02440 422 SLPIG 426 (699)
T ss_pred CCCHH
Confidence 88765
No 79
>PLN02256 arogenate dehydrogenase
Probab=99.03 E-value=1.1e-08 Score=98.40 Aligned_cols=157 Identities=13% Similarity=0.098 Sum_probs=103.9
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
..|+|+|||+|.||.++|..|.+. | ++|++|++++.. +. ... +
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~-G-----~~V~~~d~~~~~-~~---------a~~--------------~------- 77 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQ-G-----HTVLATSRSDYS-DI---------AAE--------------L------- 77 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhC-C-----CEEEEEECccHH-HH---------HHH--------------c-------
Confidence 458999999999999999999988 7 899999998631 10 000 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCchhHHHHHHHH-HhhhhccCCCCEEEEeeec
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEI-SRYWKERITVPVIISLAKG 199 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~-~~aDlIIlaVps~~~~~vl~~i-~~~l~~~~~~~~Ivs~~kG 199 (333)
.+...++.++++ .++|+||+|||...+.++++++ .+++++ +++|++++.+
T Consensus 78 -------------------------gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~~l~~~~l~~---~~iviDv~Sv 129 (304)
T PLN02256 78 -------------------------GVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLRSLPLQRLKR---STLFVDVLSV 129 (304)
T ss_pred -------------------------CCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHHhhhhhccCC---CCEEEecCCc
Confidence 122345666655 4799999999999999999998 566776 6888877542
Q ss_pred CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhcc----CceeEEE------eCChhhHHHHHHHhCCCCe
Q 019978 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNK----EYANARI------CGAEKWRKPLAKFLRRPHF 269 (333)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~----~~~~~~~------~~~~~~~~~l~~ll~~~~~ 269 (333)
-.. +.+.+.+.++.. . ..+...|.+..+...+ .+..... ..+++..+.+++++...|.
T Consensus 130 K~~----------~~~~~~~~l~~~-~-~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa 197 (304)
T PLN02256 130 KEF----------PKNLLLQVLPEE-F-DILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERFLDIFEEEGC 197 (304)
T ss_pred hHH----------HHHHHHHhCCCC-C-eEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHHHHHHHHHCCC
Confidence 111 123456666421 1 2456678777665422 2221111 1134567889999988887
Q ss_pred EEEecC
Q 019978 270 TVWDNG 275 (333)
Q Consensus 270 ~v~~s~ 275 (333)
++...+
T Consensus 198 ~v~~~~ 203 (304)
T PLN02256 198 RMVEMS 203 (304)
T ss_pred EEEEeC
Confidence 776544
No 80
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.01 E-value=6.5e-09 Score=110.41 Aligned_cols=121 Identities=15% Similarity=0.225 Sum_probs=86.4
Q ss_pred CCceEEEECCCHHHHHHHHHHH-HhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La-~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
..+||+|||+|.||..||..++ .. | ++|++|+++++.+++... .+.+.+ .+..+... +...
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~l-------~~~~~~~~-~~~~--- 369 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKA-G-----LPVRIKDINPQGINHALK-YSWDLL-------DKKVKRRH-LKPS--- 369 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHc-C-----CeEEEEeCCHHHHHHHHH-HHHHHH-------HHHHHcCC-CCHH---
Confidence 4579999999999999999999 77 7 999999999876654321 111111 11111111 1100
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAK 198 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~k 198 (333)
. + +..+.++++++|++ ++.+||+||.|||.. ...+++.++.+++++ ++++.|.|.
T Consensus 370 ----~--~-------------~~~~~~i~~~~~~~-~~~~aDlViEav~E~~~~K~~v~~~le~~~~~---~~ilasnTS 426 (708)
T PRK11154 370 ----E--R-------------DKQMALISGTTDYR-GFKHADVVIEAVFEDLALKQQMVAEVEQNCAP---HTIFASNTS 426 (708)
T ss_pred ----H--H-------------HHHHhcEEEeCChH-HhccCCEEeecccccHHHHHHHHHHHHhhCCC---CcEEEECCC
Confidence 0 0 01123788999984 689999999999986 689999999999998 888888888
Q ss_pred cCccc
Q 019978 199 GVEAE 203 (333)
Q Consensus 199 Gi~~~ 203 (333)
+++..
T Consensus 427 ~l~i~ 431 (708)
T PRK11154 427 SLPIG 431 (708)
T ss_pred CCCHH
Confidence 88765
No 81
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.00 E-value=7.9e-09 Score=109.80 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=87.8
Q ss_pred CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
.+.+||+|||+|.||..||..++.+ | ++|++|+++++.+++... .+.+.+. +...... +...
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~~~-------~~~~~g~-~~~~--- 372 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASK-G-----TPIVMKDINQHSLDLGLT-EAAKLLN-------KQVERGR-ITPA--- 372 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHHH-------HHHHcCC-CChh---
Confidence 3567999999999999999999999 8 999999999987764321 1111111 1111111 1100
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAK 198 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~k 198 (333)
. . +..+.+++.++|++ ++.+||+||.|||.+ ..++++.++.+++++ ++++.|.|.
T Consensus 373 ----~--~-------------~~~~~~i~~~~~~~-~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~---~~ilasnTS 429 (714)
T TIGR02437 373 ----K--M-------------AGVLNGITPTLSYA-GFDNVDIVVEAVVENPKVKAAVLAEVEQHVRE---DAILASNTS 429 (714)
T ss_pred ----h--H-------------HHHHhCeEEeCCHH-HhcCCCEEEEcCcccHHHHHHHHHHHHhhCCC---CcEEEECCC
Confidence 0 0 11123788899985 579999999999986 689999999999998 888888888
Q ss_pred cCccc
Q 019978 199 GVEAE 203 (333)
Q Consensus 199 Gi~~~ 203 (333)
+++..
T Consensus 430 ~l~i~ 434 (714)
T TIGR02437 430 TISIS 434 (714)
T ss_pred CCCHH
Confidence 88765
No 82
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.99 E-value=8.6e-09 Score=101.14 Aligned_cols=160 Identities=15% Similarity=0.109 Sum_probs=100.1
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
+||+|||+|.||+++|..|.++ | ++|.+|+++++..+... . .+.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~-G-----~~v~i~~~~~~~~~~~~---------a---------------~~~------ 44 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA-G-----PDVFIIGYDPSAAQLAR---------A---------------LGF------ 44 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc-C-----CCeEEEEeCCCHHHHHH---------H---------------hcC------
Confidence 4799999999999999999999 8 89999999886432100 0 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHh-hhhccCCCCEEEEeeecCcc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR-YWKERITVPVIISLAKGVEA 202 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~-~l~~~~~~~~Ivs~~kGi~~ 202 (333)
.. .-..++++++++++||+||+|||++.+.++++++.+ .+++ ++ +|+-..++..
T Consensus 45 -~~--------------------~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~~l~~~~l~~---~~-ivtDv~SvK~ 99 (359)
T PRK06545 45 -GV--------------------IDELAADLQRAAAEADLIVLAVPVDATAALLAELADLELKP---GV-IVTDVGSVKG 99 (359)
T ss_pred -CC--------------------CcccccCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhcCCCC---Cc-EEEeCccccH
Confidence 00 012346777888999999999999999999999987 3665 54 4443434332
Q ss_pred cccCCccCCCHHHHHHhHhCCCC-----CcEE--EEcCCCchH-HHhccCceeEEEe--CChhhHHHHHHHhCCCCeEEE
Q 019978 203 ELEAVPRIITPTQMINRATGVPI-----ENIL--YLGGPNIAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVW 272 (333)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~-----~~~~--vl~GP~~a~-ev~~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v~ 272 (333)
. +.+.+++.++... +|+. -.+||..+. ++..+.++.++.. .+++..+.++++|+..|.++.
T Consensus 100 ~---------i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v 170 (359)
T PRK06545 100 A---------ILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAVAELKDLLSGTGAKFV 170 (359)
T ss_pred H---------HHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 2 1122344332111 1111 012233332 4455555544432 355678899999999887775
Q ss_pred e
Q 019978 273 D 273 (333)
Q Consensus 273 ~ 273 (333)
.
T Consensus 171 ~ 171 (359)
T PRK06545 171 V 171 (359)
T ss_pred E
Confidence 3
No 83
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.98 E-value=7.8e-09 Score=110.19 Aligned_cols=122 Identities=17% Similarity=0.238 Sum_probs=87.9
Q ss_pred CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
....+|+|||+|.||..||..++.+ | ++|++|+++++.+++... .+.+.+ .+...... +...
T Consensus 333 ~~i~~v~ViGaG~MG~gIA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~i~~~l-------~~~~~~g~-~~~~--- 394 (737)
T TIGR02441 333 RPVKTLAVLGAGLMGAGIAQVSVDK-G-----LKTVLKDATPAGLDRGQQ-QVFKGL-------NKKVKRKK-ITSL--- 394 (737)
T ss_pred CcccEEEEECCCHhHHHHHHHHHhC-C-----CcEEEecCCHHHHHHHHH-HHHHHH-------HHHHHcCC-CCHH---
Confidence 3567999999999999999999999 8 999999999987765321 111111 11111111 1100
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAK 198 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~k 198 (333)
.. +..+.+++.++|++ ++.+||+||.+||.+ ...+++.++.+++++ ++++.|.|.
T Consensus 395 ------~~-------------~~~~~~i~~~~~~~-~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~---~~ilasNTS 451 (737)
T TIGR02441 395 ------ER-------------DSILSNLTPTLDYS-GFKNADMVIEAVFEDLSLKHKVIKEVEAVVPP---HCIIASNTS 451 (737)
T ss_pred ------HH-------------HHHHhCeEEeCCHH-HhccCCeehhhccccHHHHHHHHHHHHhhCCC---CcEEEEcCC
Confidence 00 11123788899986 579999999999986 699999999999998 888888888
Q ss_pred cCccc
Q 019978 199 GVEAE 203 (333)
Q Consensus 199 Gi~~~ 203 (333)
++...
T Consensus 452 sl~i~ 456 (737)
T TIGR02441 452 ALPIK 456 (737)
T ss_pred CCCHH
Confidence 88765
No 84
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.98 E-value=3.2e-08 Score=101.36 Aligned_cols=179 Identities=16% Similarity=0.163 Sum_probs=108.4
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
...||+|||+|.||..||..++.+ | ++|++|+++++.+++... .+.+.+ +++....+ +...
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~a-G-----~~V~l~D~~~e~l~~~~~-~i~~~l-------~~~~~~G~-~~~~---- 66 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQA-G-----HTVLLYDARAGAAAAARD-GIAARL-------AKLVEKGK-LTAE---- 66 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHH-------HHHHHcCC-CCHH----
Confidence 457999999999999999999999 8 999999999987765321 111111 11111111 1000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kG 199 (333)
. . +..+.++..++++++ +.+||+||.|+|.. ..+.++.++..++++ ++++.+.+..
T Consensus 67 ---~--~-------------~~~~~~i~~~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~---~ailasntSt 124 (507)
T PRK08268 67 ---Q--A-------------DAALARLRPVEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSP---DCILATNTSS 124 (507)
T ss_pred ---H--H-------------HHHHhCeEEeCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 0 0 011236888889865 67999999999986 466777888887776 6777677766
Q ss_pred CcccccCCccCCCHHHHHHhHhCCCCCcE-EEEcCCCchHHHhccCceeEEEe---CChhhHHHHHHHhCCCCeEEEecC
Q 019978 200 VEAELEAVPRIITPTQMINRATGVPIENI-LYLGGPNIASEIYNKEYANARIC---GAEKWRKPLAKFLRRPHFTVWDNG 275 (333)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~-~vl~GP~~a~ev~~~~~~~~~~~---~~~~~~~~l~~ll~~~~~~v~~s~ 275 (333)
+.+. + +++.+..+..-+ .-..-|.... +-..++. .+++.++.+..++...+-.+....
T Consensus 125 l~i~-----------~-la~~~~~p~r~~G~hff~Pa~v~------~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~ 186 (507)
T PRK08268 125 LSIT-----------A-IAAALKHPERVAGLHFFNPVPLM------KLVEVVSGLATDPAVADALYALARAWGKTPVRAK 186 (507)
T ss_pred CCHH-----------H-HHhhcCCcccEEEEeecCCcccC------eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEec
Confidence 6653 2 455444321101 1112233221 1111232 356778888888877765555445
Q ss_pred ChhH
Q 019978 276 DLVT 279 (333)
Q Consensus 276 Di~g 279 (333)
|.-|
T Consensus 187 d~pG 190 (507)
T PRK08268 187 DTPG 190 (507)
T ss_pred CCCC
Confidence 6544
No 85
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.92 E-value=2e-08 Score=106.92 Aligned_cols=157 Identities=18% Similarity=0.172 Sum_probs=99.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
+||+|||+|.||.+++..|... |. .++|++|+++++.++.+. + . +.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-G~---~~~V~~~d~~~~~~~~a~---------~--------------~-g~------ 49 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-GL---AREVVAVDRRAKSLELAV---------S--------------L-GV------ 49 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-CC---CCEEEEEECChhHHHHHH---------H--------------C-CC------
Confidence 6899999999999999999988 61 147999999986543211 0 0 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~ 203 (333)
.....++.+++++++|+||+|+|++.+.++++++++++++ ++ +|+...++...
T Consensus 50 -----------------------~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l~~~~~~---~~-ii~d~~svk~~ 102 (735)
T PRK14806 50 -----------------------IDRGEEDLAEAVSGADVIVLAVPVLAMEKVLADLKPLLSE---HA-IVTDVGSTKGN 102 (735)
T ss_pred -----------------------CCcccCCHHHHhcCCCEEEECCCHHHHHHHHHHHHHhcCC---Cc-EEEEcCCCchH
Confidence 0112356667788999999999999999999999998875 54 44444444322
Q ss_pred ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchH-------------HHhccCceeEEEe--CChhhHHHHHHHhCCCC
Q 019978 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIAS-------------EIYNKEYANARIC--GAEKWRKPLAKFLRRPH 268 (333)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~-------------ev~~~~~~~~~~~--~~~~~~~~l~~ll~~~~ 268 (333)
+.+.+++.++.. .+...|+++. +...+.++.++.. .+++..+.++++|+..|
T Consensus 103 ---------~~~~l~~~~~~~----~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G 169 (735)
T PRK14806 103 ---------VVDAARAVFGEL----PAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALARVDRLWRAVG 169 (735)
T ss_pred ---------HHHHHHHhcccc----CCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHHHHHHHHHHcC
Confidence 123355555321 1223344442 1223333333322 34457888999999988
Q ss_pred eEEEec
Q 019978 269 FTVWDN 274 (333)
Q Consensus 269 ~~v~~s 274 (333)
-+++..
T Consensus 170 ~~~~~~ 175 (735)
T PRK14806 170 ADVLHM 175 (735)
T ss_pred CEEEEc
Confidence 766543
No 86
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.91 E-value=8.8e-10 Score=92.99 Aligned_cols=98 Identities=26% Similarity=0.499 Sum_probs=62.2
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
..+||+|||+|.+|++|+..|.++ | |.|. +|+|+.+..+++. ..++
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~a-g-----~~v~~v~srs~~sa~~a~----------------------~~~~----- 55 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARA-G-----HEVVGVYSRSPASAERAA----------------------AFIG----- 55 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHT-T-----SEEEEESSCHH-HHHHHH----------------------C--T-----
T ss_pred CccEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEEeCCcccccccc----------------------cccc-----
Confidence 458999999999999999999999 8 8876 4577765433211 0111
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhh--hhccCCCCEEEEeee
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY--WKERITVPVIISLAK 198 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~--l~~~~~~~~Ivs~~k 198 (333)
... ..++++.+.++|++|++||.+.+.+++++|..+ +.+ +++|+.++-
T Consensus 56 --------------------------~~~-~~~~~~~~~~aDlv~iavpDdaI~~va~~La~~~~~~~---g~iVvHtSG 105 (127)
T PF10727_consen 56 --------------------------AGA-ILDLEEILRDADLVFIAVPDDAIAEVAEQLAQYGAWRP---GQIVVHTSG 105 (127)
T ss_dssp --------------------------T------TTGGGCC-SEEEE-S-CCHHHHHHHHHHCC--S-T---T-EEEES-S
T ss_pred --------------------------ccc-ccccccccccCCEEEEEechHHHHHHHHHHHHhccCCC---CcEEEECCC
Confidence 111 234556788999999999999999999999987 555 678887764
Q ss_pred cCcc
Q 019978 199 GVEA 202 (333)
Q Consensus 199 Gi~~ 202 (333)
.++.
T Consensus 106 a~~~ 109 (127)
T PF10727_consen 106 ALGS 109 (127)
T ss_dssp S--G
T ss_pred CChH
Confidence 4443
No 87
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.88 E-value=6.1e-08 Score=95.76 Aligned_cols=149 Identities=23% Similarity=0.273 Sum_probs=95.4
Q ss_pred CCCCCceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchh
Q 019978 39 AEGDPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (333)
Q Consensus 39 ~~~~~~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~ 117 (333)
.++.+++|+||| +|.||..+|..|.++ | ++|++|++++.
T Consensus 94 ~~~~~~~I~IiGG~GlmG~slA~~l~~~-G-----~~V~~~d~~~~---------------------------------- 133 (374)
T PRK11199 94 LNPDLRPVVIVGGKGQLGRLFAKMLTLS-G-----YQVRILEQDDW---------------------------------- 133 (374)
T ss_pred cCcccceEEEEcCCChhhHHHHHHHHHC-C-----CeEEEeCCCcc----------------------------------
Confidence 344568999999 999999999999999 8 99999998531
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEee
Q 019978 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (333)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~ 197 (333)
+++++++.+||+||+|||.....++++++.+ +++ +++|+.++
T Consensus 134 ----------------------------------~~~~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~---~~iv~Dv~ 175 (374)
T PRK11199 134 ----------------------------------DRAEDILADAGMVIVSVPIHLTEEVIARLPP-LPE---DCILVDLT 175 (374)
T ss_pred ----------------------------------hhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCC---CcEEEECC
Confidence 0123456789999999999999999999988 776 77777663
Q ss_pred ecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeC-ChhhHHHHHHHhCCCCeEEEecCC
Q 019978 198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG-AEKWRKPLAKFLRRPHFTVWDNGD 276 (333)
Q Consensus 198 kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~-~~~~~~~l~~ll~~~~~~v~~s~D 276 (333)
. +.. .+.+.+.+.++.+.....-+.||.... ..+. ..+...+ +++..+.+.+++...|.++...+.
T Consensus 176 S-vK~---------~~~~~~~~~~~~~fvg~HPm~G~~~~~--~~~~-~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~~ 242 (374)
T PRK11199 176 S-VKN---------APLQAMLAAHSGPVLGLHPMFGPDVGS--LAKQ-VVVVCDGRQPEAYQWLLEQIQVWGARLHRISA 242 (374)
T ss_pred C-ccH---------HHHHHHHHhCCCCEEeeCCCCCCCCcc--cCCC-EEEEcCCCCchHHHHHHHHHHHCCCEEEECCH
Confidence 1 111 112233333321100011235554421 1221 1112222 345678889999988888876553
Q ss_pred hh
Q 019978 277 LV 278 (333)
Q Consensus 277 i~ 278 (333)
-.
T Consensus 243 ~~ 244 (374)
T PRK11199 243 VE 244 (374)
T ss_pred HH
Confidence 33
No 88
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.87 E-value=3.6e-08 Score=93.45 Aligned_cols=184 Identities=16% Similarity=0.169 Sum_probs=112.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
.++|++||.|+||++++..|.++ | |.|++|+|+.++.+++...
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~-G-----~kVtV~dr~~~k~~~f~~~------------------------------- 77 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKA-G-----YKVTVYDRTKDKCKEFQEA------------------------------- 77 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHc-C-----CEEEEEeCcHHHHHHHHHh-------------------------------
Confidence 47999999999999999999999 8 9999999998876542210
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHHHHhhhh---ccCCCCEEEEeee
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEISRYWK---ERITVPVIISLAK 198 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~~i~~~l~---~~~~~~~Ivs~~k 198 (333)
..++.+.+.|..+++|+||.+||.. +.++++-.-...+. +. ++..|. +.
T Consensus 78 ------------------------Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g--~~~~vD-mS 130 (327)
T KOG0409|consen 78 ------------------------GARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPG--KKATVD-MS 130 (327)
T ss_pred ------------------------chhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcceeeccCC--CceEEe-cc
Confidence 2234467888899999999999864 66666644333222 21 122121 11
Q ss_pred cCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHh--ccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCC
Q 019978 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY--NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (333)
Q Consensus 199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~--~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~D 276 (333)
.+.++ .+..|++..-. ....++-.|.....-. ++..+ ++++++++..+....+|...+-++.+-..
T Consensus 131 Tidp~---------~s~ei~~~i~~--~~~~~vDAPVSGg~~~A~~G~Lt-imagGde~~~~~~~~~~~~mGk~~~~~G~ 198 (327)
T KOG0409|consen 131 TIDPD---------TSLEIAKAISN--KGGRFVDAPVSGGVKGAEEGTLT-IMAGGDEALFEAASPVFKLMGKNVVFLGG 198 (327)
T ss_pred ccCHH---------HHHHHHHHHHh--CCCeEEeccccCCchhhhcCeEE-EEecCcHHHHHHHHHHHHHhcceEEEecc
Confidence 23332 12334444421 1233556665543222 23222 24578888999999999998866665444
Q ss_pred hhHHHHHHHHHHH-HHH-HHHHHhccCC
Q 019978 277 LVTHEVMGGLKNV-YAI-GAGMVAALTN 302 (333)
Q Consensus 277 i~gve~~~alkNv-~Ai-~~Gi~~gl~~ 302 (333)
.=.-+-++...|. +++ -.|.++++-+
T Consensus 199 ~GnG~~~Kl~nnm~~g~~M~g~aEal~l 226 (327)
T KOG0409|consen 199 VGNGQAAKLCNNMLLGSSMVGLAEALAL 226 (327)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555565 222 2555555543
No 89
>PLN02858 fructose-bisphosphate aldolase
Probab=98.83 E-value=8.5e-08 Score=108.18 Aligned_cols=182 Identities=13% Similarity=0.078 Sum_probs=114.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
.||++||.|.||..||..|.+. | |+|++|+|++++++++..
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~-G-----~~v~v~dr~~~~~~~l~~--------------------------------- 45 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS-G-----FKVQAFEISTPLMEKFCE--------------------------------- 45 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHH---------------------------------
Confidence 5899999999999999999999 8 999999999876543210
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH---HHHHhhhhccCCCCEEEEeeec
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF---EEISRYWKERITVPVIISLAKG 199 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl---~~i~~~l~~~~~~~~Ivs~~kG 199 (333)
......+++.+++++||+||+++|.. .+++++ +.+.+.+.+ ++++|.++ .
T Consensus 46 ----------------------~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~---g~iivd~S-T 99 (1378)
T PLN02858 46 ----------------------LGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQK---GAVILIRS-T 99 (1378)
T ss_pred ----------------------cCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCC---cCEEEECC-C
Confidence 02334567888899999999999975 677776 345555555 56777654 3
Q ss_pred CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH-H-hccCceeEEEeCChhhHHHHHHHhCCCCeEEEe-cCC
Q 019978 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE-I-YNKEYANARICGAEKWRKPLAKFLRRPHFTVWD-NGD 276 (333)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e-v-~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~-s~D 276 (333)
+.+.+ ++.+.+.+......+.++-.|..... . ..|..+ ++++++++..++++.+|+..+-+++. ..+
T Consensus 100 i~p~~---------~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~-imvGG~~~~~~~~~p~l~~~g~~i~~~~G~ 169 (1378)
T PLN02858 100 ILPLQ---------LQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLM-IIASGRSDAITRAQPFLSAMCQKLYTFEGE 169 (1378)
T ss_pred CCHHH---------HHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeE-EEEcCCHHHHHHHHHHHHHhcCceEEecCC
Confidence 33331 12233323111101223444443221 1 233222 35678888899999999877766653 455
Q ss_pred hhHHHHHHHHHHHHHH--HHHHHhcc
Q 019978 277 LVTHEVMGGLKNVYAI--GAGMVAAL 300 (333)
Q Consensus 277 i~gve~~~alkNv~Ai--~~Gi~~gl 300 (333)
.=.....+.+.|.+.. ..++.+++
T Consensus 170 ~G~g~~~KL~nN~l~~~~~~a~aEAl 195 (1378)
T PLN02858 170 IGAGSKVKMVNELLEGIHLVASAEAM 195 (1378)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444677777776332 24444444
No 90
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.81 E-value=8.5e-08 Score=91.18 Aligned_cols=166 Identities=16% Similarity=0.225 Sum_probs=102.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
+++|+|+|+|.||..||..|.+. | +.|.+|+++...... ... ..+ ++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~-g-----~~v~i~g~d~~~~~~----------~~a-----------~~l-gv----- 49 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEA-G-----LVVRIIGRDRSAATL----------KAA-----------LEL-GV----- 49 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHc-C-----CeEEEEeecCcHHHH----------HHH-----------hhc-Cc-----
Confidence 57999999999999999999999 8 899999998753211 000 000 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCH-HHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNL-QEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~-~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
.-+.+.+. .+++.++|+||+|||-..+.++++++.+.+++ +++|..++.-
T Consensus 50 ------------------------~d~~~~~~~~~~~~~aD~VivavPi~~~~~~l~~l~~~l~~---g~iv~Dv~S~-- 100 (279)
T COG0287 50 ------------------------IDELTVAGLAEAAAEADLVIVAVPIEATEEVLKELAPHLKK---GAIVTDVGSV-- 100 (279)
T ss_pred ------------------------ccccccchhhhhcccCCEEEEeccHHHHHHHHHHhcccCCC---CCEEEecccc--
Confidence 01122232 45677899999999999999999999998887 7777655411
Q ss_pred ccccCCccCCCHHHHHHhHhCCCCCcEE---EEcCCCchHHHhccCceeEEEeC--ChhhHHHHHHHhCCCCeEEEecCC
Q 019978 202 AELEAVPRIITPTQMINRATGVPIENIL---YLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDNGD 276 (333)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~---vl~GP~~a~ev~~~~~~~~~~~~--~~~~~~~l~~ll~~~~~~v~~s~D 276 (333)
...+-+.+++..+.. ..+. -+.||.--....++.....+... +.+++..+.+++...|-++...+-
T Consensus 101 --------K~~v~~a~~~~~~~~-~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~~ 171 (279)
T COG0287 101 --------KSSVVEAMEKYLPGD-VRFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRLWEALGARLVEMDA 171 (279)
T ss_pred --------cHHHHHHHHHhccCC-CeeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcCh
Confidence 112224444444321 1110 12455301122334333333322 346899999999998877775544
Q ss_pred hhH
Q 019978 277 LVT 279 (333)
Q Consensus 277 i~g 279 (333)
-..
T Consensus 172 eeH 174 (279)
T COG0287 172 EEH 174 (279)
T ss_pred HHH
Confidence 433
No 91
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.68 E-value=1.2e-06 Score=84.53 Aligned_cols=196 Identities=20% Similarity=0.276 Sum_probs=116.7
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
++|+|||.|+||.++|..|.+. | ++|++|+|.....+. ...
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~-G-----~~ViV~~r~~~s~~~--------------------------A~~------- 57 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDS-G-----VEVVVGVRPGKSFEV--------------------------AKA------- 57 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC-c-----CEEEEEECcchhhHH--------------------------HHH-------
Confidence 7999999999999999999998 8 999999876432110 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHH-HHHhhhhccCCCCEEEEeeecCcc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFE-EISRYWKERITVPVIISLAKGVEA 202 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~-~i~~~l~~~~~~~~Ivs~~kGi~~ 202 (333)
+ .+.+ .++++++..||+|++.+|....+.++. .+.+.+++ ++ ++.++-|+..
T Consensus 58 ----------~------------G~~v-~sl~Eaak~ADVV~llLPd~~t~~V~~~eil~~MK~---Ga-iL~f~hgfni 110 (335)
T PRK13403 58 ----------D------------GFEV-MSVSEAVRTAQVVQMLLPDEQQAHVYKAEVEENLRE---GQ-MLLFSHGFNI 110 (335)
T ss_pred ----------c------------CCEE-CCHHHHHhcCCEEEEeCCChHHHHHHHHHHHhcCCC---CC-EEEECCCcce
Confidence 0 1222 368889999999999999876677774 57777776 44 5667888876
Q ss_pred cccCCccCCCHHHHHHhHhCCCCCcEEEE--cCCCchH--HHh--ccCceeEEEeCC-----hhhHHHHHHHhCCC--C-
Q 019978 203 ELEAVPRIITPTQMINRATGVPIENILYL--GGPNIAS--EIY--NKEYANARICGA-----EKWRKPLAKFLRRP--H- 268 (333)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~~~vl--~GP~~a~--ev~--~~~~~~~~~~~~-----~~~~~~l~~ll~~~--~- 268 (333)
-. ....|.....+..+ -||.+.. +.. .|.|+.+.+-.| .+.+.....-+-+. |
T Consensus 111 ~~-------------~~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala~a~~iG~~ragv 177 (335)
T PRK13403 111 HF-------------GQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALAYAKGVGCTRAGV 177 (335)
T ss_pred ec-------------CceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHHHHHHcCCCceeE
Confidence 42 12222222233333 3777743 222 345666543222 13444444444432 2
Q ss_pred ----eEEEecCChhHHH--HHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH
Q 019978 269 ----FTVWDNGDLVTHE--VMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM 322 (333)
Q Consensus 269 ----~~v~~s~Di~gve--~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l 322 (333)
|+-...+|+.|-+ +||.+.-++-.+.-.+-.-+| ...-|+ -.+++|++.+
T Consensus 178 ~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy---~pe~Ay-fe~~he~kli 233 (335)
T PRK13403 178 IETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGY---RPEIAY-FECLHELKLI 233 (335)
T ss_pred EecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCC---CHHHHH-HHHHHHHHHH
Confidence 3334678898865 666655543333333322333 223333 3678888665
No 92
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.67 E-value=1.2e-07 Score=88.02 Aligned_cols=164 Identities=16% Similarity=0.145 Sum_probs=116.6
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
|+|++||+|.|..+++..+... |.... +++..+..++.... ..+..
T Consensus 1 ~~~gfigag~ma~ala~g~~~~-Gi~~~-~~i~~s~~~~~~~~-------------------------~~~~~------- 46 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVAS-GIIEA-NRIWASVQTERSLG-------------------------LMFEA------- 46 (267)
T ss_pred CceeEechhhhHHHHHhccccc-CCCch-hheeeecCchhhhh-------------------------hhhhc-------
Confidence 6899999999999999999888 85544 44444443211000 00110
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~ 203 (333)
..++.+.+..+.++.+|++++++|++.+.+++.++...+.. +.+|+|+..|....
T Consensus 47 ----------------------~g~~~~~~n~~~~~~s~v~~~svKp~~i~~vls~~~~~~~~---~~iivS~aaG~tl~ 101 (267)
T KOG3124|consen 47 ----------------------LGVKTVFTNLEVLQASDVVFLSVKPQVIESVLSEIKPKVSK---GKIIVSVAAGKTLS 101 (267)
T ss_pred ----------------------CCceeeechHHHHhhccceeEeecchhHHHHhhcCcccccc---ceEEEEEeecccHH
Confidence 12334334467788999999999999999999999885544 67999999998875
Q ss_pred ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEe-CChhhHHHHHHHhCCCCeEEEecCChhHH
Q 019978 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (333)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~-~~~~~~~~l~~ll~~~~~~v~~s~Di~gv 280 (333)
. +++.++.+ .-.++.+||++..+..+...+..-+ ...++.+.++.+|+..|+-..+.+|.+.+
T Consensus 102 ~------------l~~~l~~~--~rviRvmpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~vG~~~evpE~~iDa 165 (267)
T KOG3124|consen 102 S------------LESKLSPP--TRVIRVMPNTPSVVGEGASVYAIGCHATNEDLELVEELLSAVGLCEEVPEKCIDA 165 (267)
T ss_pred H------------HHHhcCCC--CceEEecCCChhhhhcCcEEEeeCCCcchhhHHHHHHHHHhcCcceeCcHHhhhH
Confidence 2 56667622 2357889999999888866544332 23467799999999999988887776653
No 93
>PLN02712 arogenate dehydrogenase
Probab=98.67 E-value=6e-07 Score=94.86 Aligned_cols=156 Identities=14% Similarity=0.185 Sum_probs=99.6
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
..|||+|||+|.||.++|..|.+. | ++|.+|+|+.+. +.. ..
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~-G-----~~V~~~dr~~~~-~~a--------------------------~~----- 409 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQ-G-----HTVLAYSRSDYS-DEA--------------------------QK----- 409 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHC-c-----CEEEEEECChHH-HHH--------------------------HH-----
Confidence 458999999999999999999988 8 899999998531 110 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc-CCCEEEEecCchhHHHHHHHHHh-hhhccCCCCEEEEeeec
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW-DADIVINGLPSTETKEVFEEISR-YWKERITVPVIISLAKG 199 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~-~aDlIIlaVps~~~~~vl~~i~~-~l~~~~~~~~Ivs~~kG 199 (333)
+ .+...+++++++. .+|+||+|||...+.++++++.. .+++ ++++++++.+
T Consensus 410 ----~--------------------Gv~~~~~~~el~~~~aDvVILavP~~~~~~vi~~l~~~~lk~---g~ivvDv~Sv 462 (667)
T PLN02712 410 ----L--------------------GVSYFSDADDLCEEHPEVILLCTSILSTEKVLKSLPFQRLKR---STLFVDVLSV 462 (667)
T ss_pred ----c--------------------CCeEeCCHHHHHhcCCCEEEECCChHHHHHHHHHHHHhcCCC---CcEEEECCCc
Confidence 0 1234467777664 58999999999999999999876 4665 6788887533
Q ss_pred CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhc-c---Ccee---EEEeCCh---hhHHHHHHHhCCCCe
Q 019978 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN-K---EYAN---ARICGAE---KWRKPLAKFLRRPHF 269 (333)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~-~---~~~~---~~~~~~~---~~~~~l~~ll~~~~~ 269 (333)
-. .+.+.+.+.++.. .. .+...|.+..+... | .+.. ..+.++. +.++.+.++|...|-
T Consensus 463 K~----------~~~~~~~~~l~~~-~~-~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa 530 (667)
T PLN02712 463 KE----------FPRNLFLQHLPQD-FD-ILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAREGC 530 (667)
T ss_pred cH----------HHHHHHHHhccCC-Cc-eEeeCCCCCccccccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHHcCC
Confidence 11 1224455655421 11 24456666555431 2 1111 1122222 345666788888887
Q ss_pred EEEec
Q 019978 270 TVWDN 274 (333)
Q Consensus 270 ~v~~s 274 (333)
++...
T Consensus 531 ~vv~m 535 (667)
T PLN02712 531 RMVEM 535 (667)
T ss_pred EEEEe
Confidence 77643
No 94
>PLN02712 arogenate dehydrogenase
Probab=98.65 E-value=4.2e-07 Score=96.02 Aligned_cols=160 Identities=13% Similarity=0.143 Sum_probs=99.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
+|||+|||+|.||.++|..|.+. | ++|++|+|+... +. ...
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~-G-----~~V~~~dr~~~~-~~--------------------------A~~------ 92 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQ-G-----HTVLAHSRSDHS-LA--------------------------ARS------ 92 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEEeCCHHH-HH--------------------------HHH------
Confidence 48999999999999999999988 8 899999998432 10 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCchhHHHHHHHHH-hhhhccCCCCEEEEeeecC
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKGV 200 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~-~~aDlIIlaVps~~~~~vl~~i~-~~l~~~~~~~~Ivs~~kGi 200 (333)
+ .+...+++++.+ +++|+||+|||...+.++++++. +++++ +++|+.++
T Consensus 93 ---~--------------------Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l~~~~l~~---g~iVvDv~--- 143 (667)
T PLN02712 93 ---L--------------------GVSFFLDPHDLCERHPDVILLCTSIISTENVLKSLPLQRLKR---NTLFVDVL--- 143 (667)
T ss_pred ---c--------------------CCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhhhhhcCCC---CeEEEECC---
Confidence 0 233456676644 56999999999999999999986 56666 67787763
Q ss_pred cccccCCccCCCHHHHHHhHhCCCCCcEEEE----cCCCchHHHhccCceeEE--EeCCh----hhHHHHHHHhCCCCeE
Q 019978 201 EAELEAVPRIITPTQMINRATGVPIENILYL----GGPNIASEIYNKEYANAR--ICGAE----KWRKPLAKFLRRPHFT 270 (333)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl----~GP~~a~ev~~~~~~~~~--~~~~~----~~~~~l~~ll~~~~~~ 270 (333)
+. ...+.+.+.+.++.. .. .+. .||..+.....+.+.... ...++ +.++.+.++|...|.+
T Consensus 144 Sv-------K~~~~~~l~~~l~~~-~~-~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~ 214 (667)
T PLN02712 144 SV-------KEFAKNLLLDYLPED-FD-IICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFEREGCK 214 (667)
T ss_pred CC-------cHHHHHHHHHhcCCC-Ce-EEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHHHHHHHcCCE
Confidence 11 122334455555421 11 222 345433222333332111 11222 2356667888888888
Q ss_pred EEecCChhH
Q 019978 271 VWDNGDLVT 279 (333)
Q Consensus 271 v~~s~Di~g 279 (333)
+...+--..
T Consensus 215 v~~ms~eeH 223 (667)
T PLN02712 215 MVEMSCTEH 223 (667)
T ss_pred EEEeCHHHH
Confidence 775543333
No 95
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.65 E-value=1.2e-06 Score=86.53 Aligned_cols=146 Identities=11% Similarity=0.097 Sum_probs=91.8
Q ss_pred CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
..+||+|||. |.||..||..|.+..| ++|+.|++..+.
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~-----~~V~g~D~~d~~------------------------------------ 41 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQ-----LEVIGHDPADPG------------------------------------ 41 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCC-----CEEEEEcCCccc------------------------------------
Confidence 3579999999 9999999999986424 788888874210
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhh---hhccCCCCEEEEee
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY---WKERITVPVIISLA 197 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~---l~~~~~~~~Ivs~~ 197 (333)
.+++++++.+||+||+|||...+.+++++++++ +++ +++|..+.
T Consensus 42 ------------------------------~~~~~~~v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~---~~iVtDVg 88 (370)
T PRK08818 42 ------------------------------SLDPATLLQRADVLIFSAPIRHTAALIEEYVALAGGRAA---GQLWLDVT 88 (370)
T ss_pred ------------------------------cCCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCC---CeEEEECC
Confidence 123456688999999999999999999999987 566 66665443
Q ss_pred ecCcccccCCccCCCHHHHHHhHhCCCCCcEE---EEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEec
Q 019978 198 KGVEAELEAVPRIITPTQMINRATGVPIENIL---YLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDN 274 (333)
Q Consensus 198 kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~---vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s 274 (333)
. .+ ..+++...+.. .++. =+.||... ...++.+..++.....+....+++++...|.++...
T Consensus 89 S-----------vK--~~i~~~~~~~~-~~fVG~HPMaG~E~s-~lf~g~~~iltp~~~~~~~~~v~~l~~~~Ga~v~~~ 153 (370)
T PRK08818 89 S-----------IK--QAPVAAMLASQ-AEVVGLHPMTAPPKS-PTLKGRVMVVCEARLQHWSPWVQSLCSALQAECVYA 153 (370)
T ss_pred C-----------Cc--HHHHHHHHhcC-CCEEeeCCCCCCCCC-cccCCCeEEEeCCCchhHHHHHHHHHHHcCCEEEEc
Confidence 1 11 01122222111 0110 12455433 234455443333333345677889998888777654
Q ss_pred CC
Q 019978 275 GD 276 (333)
Q Consensus 275 ~D 276 (333)
+-
T Consensus 154 ~a 155 (370)
T PRK08818 154 TP 155 (370)
T ss_pred CH
Confidence 43
No 96
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.59 E-value=8.9e-09 Score=93.99 Aligned_cols=163 Identities=19% Similarity=0.284 Sum_probs=106.5
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
.+..|+|||+|-||+.+|+..+.. | ++|.+++++++.+.+.++ .|.+. ++|.......-.
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~s-g-----~~V~l~d~~~~aL~~A~~-----~I~~s---l~rvakKk~~~~------ 69 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATS-G-----LNVWLVDANEDALSRATK-----AISSS---LKRVAKKKKADD------ 69 (298)
T ss_pred cccceEEEcccccchhHHHHHHhc-C-----CceEEecCCHHHHHHHHH-----HHHHH---HHHHHhhcccCC------
Confidence 457899999999999999999999 8 999999999988776542 23332 222221111000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kG 199 (333)
+..-+|+.. ..+.+++.+++..+++.++|+||.++-.. ..+.+++++....++ ++++.+.+..
T Consensus 70 ---~~~~~e~v~---------~~l~ri~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~---~~il~tNTSS 134 (298)
T KOG2304|consen 70 ---PVALEEFVD---------DTLDRIKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKS---STILATNTSS 134 (298)
T ss_pred ---hhhHHHHHH---------HHHHHHHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhccc---ceEEeecccc
Confidence 000011111 23347888999999999999999999764 688999999998887 7777777776
Q ss_pred CcccccCCccCCCHHHHHHhHhCCCCCc----EEEEcCCCchHHHh
Q 019978 200 VEAELEAVPRIITPTQMINRATGVPIEN----ILYLGGPNIASEIY 241 (333)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~----~~vl~GP~~a~ev~ 241 (333)
+..... ....+.++++..-+|-.| .| +.++.++.+..+..
T Consensus 135 l~lt~i-a~~~~~~srf~GlHFfNP-vPvMKLvEVir~~~TS~eTf 178 (298)
T KOG2304|consen 135 LSLTDI-ASATQRPSRFAGLHFFNP-VPVMKLVEVIRTDDTSDETF 178 (298)
T ss_pred eeHHHH-HhhccChhhhceeeccCC-chhHHHhhhhcCCCCCHHHH
Confidence 665421 123455666555444322 12 24667777665544
No 97
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.55 E-value=2.2e-06 Score=82.55 Aligned_cols=95 Identities=19% Similarity=0.134 Sum_probs=69.5
Q ss_pred ceEEEECCCH--------------------HHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhH
Q 019978 44 LRIVGVGAGA--------------------WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (333)
Q Consensus 44 ~kI~IIGaG~--------------------mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~ 103 (333)
|||+|.|+|+ -|.+||..|+++ | |+|++|+|+++.++.-..+.
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA-G-----heV~V~Drnrsa~e~e~~e~----------- 63 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA-G-----HDVVLAEPNREFMSDDLWKK----------- 63 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC-C-----CEEEEEeCChhhhhhhhhHH-----------
Confidence 6888888886 488999999999 8 99999999876432100000
Q ss_pred HHHhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHHHHh
Q 019978 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEISR 182 (333)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~~i~~ 182 (333)
+.. ....+.+++.++++++|+||+++|.. +++++++.+.+
T Consensus 64 ----------Lae-----------------------------aGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa 104 (341)
T TIGR01724 64 ----------VED-----------------------------AGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIE 104 (341)
T ss_pred ----------HHH-----------------------------CCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHh
Confidence 100 13445677888999999999999976 47888888888
Q ss_pred hhhccCCCCEEEEee
Q 019978 183 YWKERITVPVIISLA 197 (333)
Q Consensus 183 ~l~~~~~~~~Ivs~~ 197 (333)
.+++ +++||.++
T Consensus 105 ~L~~---GaIVID~S 116 (341)
T TIGR01724 105 HVPE---NAVICNTC 116 (341)
T ss_pred cCCC---CCEEEECC
Confidence 7776 67777553
No 98
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.54 E-value=3.4e-07 Score=89.07 Aligned_cols=92 Identities=17% Similarity=0.238 Sum_probs=70.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
|+|+|||+|.||.++|..|... | ++|..|+++++... .
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~-G-----~~V~~~d~~~~~~~----------------------------~-------- 184 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGF-G-----ATITAYDAYPNKDL----------------------------D-------- 184 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEeCChhHhh----------------------------h--------
Confidence 7999999999999999999887 8 99999999864210 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-H-HHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-T-KEVFEEISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~-~-~~vl~~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
.+...++++++++++|+|++++|... . .-+.+.+...+++ ++++|+++.|-.
T Consensus 185 -----------------------~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~---gavlIN~aRG~~ 238 (330)
T PRK12480 185 -----------------------FLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKK---GAILVNAARGAV 238 (330)
T ss_pred -----------------------hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCC---CcEEEEcCCccc
Confidence 01123568888999999999999763 3 3344556667776 789999999977
Q ss_pred cc
Q 019978 202 AE 203 (333)
Q Consensus 202 ~~ 203 (333)
.+
T Consensus 239 vd 240 (330)
T PRK12480 239 IN 240 (330)
T ss_pred cC
Confidence 65
No 99
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.49 E-value=1.7e-06 Score=82.88 Aligned_cols=105 Identities=16% Similarity=0.237 Sum_probs=69.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
||||+|||+|.||+.+|..++.. | + +|.++|++++.++.. . ..- ++ .....
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~-~-----~~ev~L~D~~~~~~~~~---~----~dl-----~~----~~~~~------ 53 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK-E-----LGDVVLFDIVEGVPQGK---A----LDI-----AE----AAPVE------ 53 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEEECCCchhHHH---H----HHH-----Hh----hhhhc------
Confidence 58999999999999999999987 6 5 899999988754311 0 000 00 00000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cc--------------hhHHHHHHHHHhhhh
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWK 185 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaV--ps--------------~~~~~vl~~i~~~l~ 185 (333)
.. ...++.++|.+ ++.+||+||+++ |. ..+.++++++.++.+
T Consensus 54 ---~~------------------~~~i~~~~d~~-~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~ 111 (307)
T PRK06223 54 ---GF------------------DTKITGTNDYE-DIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAP 111 (307)
T ss_pred ---CC------------------CcEEEeCCCHH-HHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 00 01466667774 589999999986 33 347777777877764
Q ss_pred ccCCCCEEEEeeecCc
Q 019978 186 ERITVPVIISLAKGVE 201 (333)
Q Consensus 186 ~~~~~~~Ivs~~kGi~ 201 (333)
+..++..+|-..
T Consensus 112 ----~~~viv~tNP~d 123 (307)
T PRK06223 112 ----DAIVIVVTNPVD 123 (307)
T ss_pred ----CeEEEEecCcHH
Confidence 456776776443
No 100
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=98.49 E-value=1.4e-07 Score=93.41 Aligned_cols=226 Identities=12% Similarity=0.069 Sum_probs=123.7
Q ss_pred ceEEEECCCHHHHHH-HHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 44 LRIVGVGAGAWGSVF-TAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 44 ~kI~IIGaG~mG~al-A~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
|||+++|+|+||+++ +..|++. | ++|++++++++++++++.+++-.+. ..+.. .
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~-g-----~~V~~vd~~~~~v~aL~~qglY~v~----------------~~~~~---~ 55 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN-G-----FEVTFVDVNQELIDALNKRKSYQVI----------------VVGEN---E 55 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHhcCCCeEEE----------------EecCC---C
Confidence 799999999999855 7788887 7 9999999988887776554321000 11100 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEe--cCHHH---HhcCCCEEEEecCchhHHHHHHHHHhhhhccC-----CCCE
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVV--TNLQE---AVWDADIVINGLPSTETKEVFEEISRYWKERI-----TVPV 192 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t--~d~~e---a~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~-----~~~~ 192 (333)
+ . .. ...+... .+.++ .+.++|+|.++|++...+.++..+.+.+.++. +.-.
T Consensus 56 ~--~---------~~-------i~~v~~~~~~~~~~~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~ 117 (381)
T PRK02318 56 Q--V---------ET-------VSNVSAINSADEEAVIEAIAEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLN 117 (381)
T ss_pred c--E---------EE-------EeeEeeeCCCCHHHHHHHhcCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCE
Confidence 0 0 00 0022222 12122 34588999999999999999999988775421 1126
Q ss_pred EEEeeecCcccccCCccCCCHHHHH------------HhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHH
Q 019978 193 IISLAKGVEAELEAVPRIITPTQMI------------NRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPL 260 (333)
Q Consensus 193 Ivs~~kGi~~~~~~~~~~~~~se~i------------~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l 260 (333)
|++|.||+..+. .+.+.+ ....+.+ ...+-+.+|... ..+... +.+. +..+.+
T Consensus 118 VlsceN~~~ng~-------~L~~~V~~~~~~~~~~wi~~~~~f~-~t~VDrI~P~~~---~~d~~~--v~~E--~f~~wv 182 (381)
T PRK02318 118 IIACENMIRGTS-------FLKKHVLKALSEDEKAWLEEHVGFV-DSAVDRIVPAQK---NEDPLD--VTVE--PFSEWI 182 (381)
T ss_pred EEecCChhhHHH-------HHHHHHHHhCCHHHHHHHHhcCCCC-CcHHhcCCCCCC---ccCCcc--cccc--cceEEE
Confidence 899999999752 112222 1222222 112344555221 111000 0000 000000
Q ss_pred HHHh--CC---CCeEEEecCChhHHHHHHHHHHHHHH-HHH---HHhccCC----CCCccHHHHHHHHHHHHHHH-H-HC
Q 019978 261 AKFL--RR---PHFTVWDNGDLVTHEVMGGLKNVYAI-GAG---MVAALTN----ESATSKSVYFAHCTSEMVVM-H-GM 325 (333)
Q Consensus 261 ~~ll--~~---~~~~v~~s~Di~gve~~~alkNv~Ai-~~G---i~~gl~~----~~~n~~~~l~~~~~~E~~~l-~-~~ 325 (333)
.+-+ .. +...+.+++|+...+|.+...|-..- .++ .+.|... ..+.....++.+.+.|+..+ . +.
T Consensus 183 iE~~~~~~~~p~~~~v~~~~dv~~~~~~Kl~~ln~~ha~~A~~g~l~G~~tv~ea~~d~~~~~~v~~l~~E~~~v~~~~~ 262 (381)
T PRK02318 183 VDKTQFKGALPKIKGMEYVDNLMPFIERKLFTVNTGHATTAYLGYLKGYKTIREAILDPSIRAVVKGALEESGAVLIKKY 262 (381)
T ss_pred EecccccCCCCCCCCcEEccCccHHHHHHHHhccHHHHHHHHHHHHcCcchHHHHHcCHHHHHHHHHHHHHHHhhcCCcC
Confidence 0000 00 11267789999999999976554333 233 3333321 12334568899999999888 3 55
Q ss_pred CC
Q 019978 326 GR 327 (333)
Q Consensus 326 G~ 327 (333)
|-
T Consensus 263 g~ 264 (381)
T PRK02318 263 GF 264 (381)
T ss_pred Cc
Confidence 63
No 101
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.46 E-value=1.9e-06 Score=87.38 Aligned_cols=175 Identities=14% Similarity=0.058 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcCCcccchhhhh
Q 019978 54 WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILK 133 (333)
Q Consensus 54 mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ 133 (333)
||..||..|+++ | ++|.+|+|++++.+++.. ... ++
T Consensus 1 MG~~mA~nL~~~-G-----~~V~v~nrt~~~~~~l~~--------~~g-------------~~----------------- 36 (459)
T PRK09287 1 MGKNLALNIASH-G-----YTVAVYNRTPEKTDEFLA--------EEG-------------KG----------------- 36 (459)
T ss_pred CcHHHHHHHHhC-C-----CeEEEECCCHHHHHHHHH--------hhC-------------CC-----------------
Confidence 899999999999 8 999999999987653211 000 00
Q ss_pred ccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCch-hHHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCcc
Q 019978 134 DGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPR 209 (333)
Q Consensus 134 ~~~~~~~~~~~~~~i~~t~d~~ea~~~---aDlIIlaVps~-~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~ 209 (333)
..+....++++++.. +|+||++||.. .++++++.+.+++.+ +.+||..++.....+
T Consensus 37 ------------~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l~~---GdiiID~gn~~~~~t----- 96 (459)
T PRK09287 37 ------------KKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLLEK---GDIIIDGGNSNYKDT----- 96 (459)
T ss_pred ------------CCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcCCC---CCEEEECCCCCHHHH-----
Confidence 034566778887764 89999999976 799999999998887 678888776544432
Q ss_pred CCCHHHHHHhHhCCCCCcEEEEcCCCchH-HHhccCceeEEEeCChhhHHHHHHHhCCCCeEE-------EecCChhHHH
Q 019978 210 IITPTQMINRATGVPIENILYLGGPNIAS-EIYNKEYANARICGAEKWRKPLAKFLRRPHFTV-------WDNGDLVTHE 281 (333)
Q Consensus 210 ~~~~se~i~~~lg~~~~~~~vl~GP~~a~-ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v-------~~s~Di~gve 281 (333)
....+.+.. ..+.++..|...- +.++..+ .++++++++..++++.+|+..+-++ .+..+.=.-.
T Consensus 97 -----~~~~~~l~~--~Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh 168 (459)
T PRK09287 97 -----IRREKELAE--KGIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGH 168 (459)
T ss_pred -----HHHHHHHHh--cCCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHH
Confidence 112222211 1122444444432 2233335 4567888888888888888644332 2333332235
Q ss_pred HHHHHHHH--HHHHHHHHhcc
Q 019978 282 VMGGLKNV--YAIGAGMVAAL 300 (333)
Q Consensus 282 ~~~alkNv--~Ai~~Gi~~gl 300 (333)
..+...|. |+...++++++
T Consensus 169 ~vKmvhN~ie~~~mq~iaEa~ 189 (459)
T PRK09287 169 YVKMVHNGIEYGDMQLIAEAY 189 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 66677775 34445555554
No 102
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.41 E-value=1.7e-06 Score=75.68 Aligned_cols=93 Identities=35% Similarity=0.477 Sum_probs=65.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc-chhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~-~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
++|+|||.|+.|.+-|..|.++ | .+|++..|+.. ..++.+
T Consensus 5 k~IAViGyGsQG~a~AlNLrDS-G-----~~V~Vglr~~s~s~~~A~--------------------------------- 45 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDS-G-----VNVIVGLREGSASWEKAK--------------------------------- 45 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHC-C------EEEEEE-TTCHHHHHHH---------------------------------
T ss_pred CEEEEECCChHHHHHHHHHHhC-C-----CCEEEEecCCCcCHHHHH---------------------------------
Confidence 6999999999999999999999 8 99999988875 222110
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHH-HHHHhhhhccCCCCEEEEeeecCc
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVF-EEISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
.+|| ++ .+.+|+++.+|+|++.+|.....+++ ++|.+.+++ ++ .+.++-|+.
T Consensus 46 ----------~~Gf------------~v-~~~~eAv~~aDvV~~L~PD~~q~~vy~~~I~p~l~~---G~-~L~fahGfn 98 (165)
T PF07991_consen 46 ----------ADGF------------EV-MSVAEAVKKADVVMLLLPDEVQPEVYEEEIAPNLKP---GA-TLVFAHGFN 98 (165)
T ss_dssp ----------HTT-------------EC-CEHHHHHHC-SEEEE-S-HHHHHHHHHHHHHHHS-T---T--EEEESSSHH
T ss_pred ----------HCCC------------ee-ccHHHHHhhCCEEEEeCChHHHHHHHHHHHHhhCCC---CC-EEEeCCcch
Confidence 0222 22 35678899999999999999999998 889999997 55 445676766
Q ss_pred c
Q 019978 202 A 202 (333)
Q Consensus 202 ~ 202 (333)
.
T Consensus 99 i 99 (165)
T PF07991_consen 99 I 99 (165)
T ss_dssp H
T ss_pred h
Confidence 4
No 103
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.37 E-value=3.7e-06 Score=80.97 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=70.1
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
|||+|||+|.||+.+|..++.. | + +|.++|++++..+. +. .. .+.+...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-g-----~~~VvlvDi~~~l~~g---~a----~d-------------~~~~~~~---- 51 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-E-----LADLVLLDVVEGIPQG---KA----LD-------------MYEASPV---- 51 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-C-----CCeEEEEeCCCChhHH---HH----Hh-------------hhhhhhc----
Confidence 6999999999999999999998 7 5 89999997653221 00 00 0111000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------hhHHHHHHHHHhhhhc
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKE 186 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps----------------~~~~~vl~~i~~~l~~ 186 (333)
. .. ..+++.++|.++ +.+||+||+++.. ..++++.+++.++.+
T Consensus 52 ~-~~------------------~~~i~~t~d~~~-~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p- 110 (305)
T TIGR01763 52 G-GF------------------DTKVTGTNNYAD-TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP- 110 (305)
T ss_pred c-CC------------------CcEEEecCCHHH-hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-
Confidence 0 00 025777788876 7899999999872 246667777777643
Q ss_pred cCCCCEEEEeeecCc
Q 019978 187 RITVPVIISLAKGVE 201 (333)
Q Consensus 187 ~~~~~~Ivs~~kGi~ 201 (333)
+..+|.++|-..
T Consensus 111 ---~~~iIv~tNP~d 122 (305)
T TIGR01763 111 ---NPIIVVVSNPLD 122 (305)
T ss_pred ---CeEEEEecCcHH
Confidence 567888887544
No 104
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=98.35 E-value=2.1e-06 Score=86.18 Aligned_cols=78 Identities=21% Similarity=0.174 Sum_probs=54.8
Q ss_pred ceEEEECCCHHHHHHHH--HHH----HhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchh
Q 019978 44 LRIVGVGAGAWGSVFTA--MLQ----DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~--~La----~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~ 117 (333)
+||+|||+|+||.+++. .++ .+ | ++|.+||++++.++.+... +. ++++..
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~-g-----~eV~L~Did~e~l~~~~~~-----~~-------------~~~~~~ 56 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELS-G-----STIALMDIDEERLETVEIL-----AK-------------KIVEEL 56 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCC-C-----CEEEEECCCHHHHHHHHHH-----HH-------------HHHHhc
Confidence 58999999999999776 343 33 4 8999999999876543211 10 111110
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc
Q 019978 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS 170 (333)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps 170 (333)
.. ..++..++|+++++++||+||+++++
T Consensus 57 -------~~------------------~~~I~~ttD~~eal~~AD~Vi~ai~~ 84 (423)
T cd05297 57 -------GA------------------PLKIEATTDRREALDGADFVINTIQV 84 (423)
T ss_pred -------CC------------------CeEEEEeCCHHHHhcCCCEEEEeeEe
Confidence 00 02578899999999999999999995
No 105
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.32 E-value=2.5e-06 Score=83.01 Aligned_cols=95 Identities=20% Similarity=0.321 Sum_probs=67.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
-++|+|||+|.||.++|..|++.+| .+|..|+++.+.. ...
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~~g-----~~V~~~d~~~~~~----------------------------~~~------ 186 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKGYG-----SDVVAYDPFPNAK----------------------------AAT------ 186 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-----CEEEEECCCccHh----------------------------HHh------
Confidence 3799999999999999999954325 7888887765311 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHH--HHHHhhhhccCCCCEEEEeeecC
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVF--EEISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl--~~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
.+...++++++++++|+|++++|.......+ +...+.+++ ++++|.+++|.
T Consensus 187 ------------------------~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~---gailIN~sRG~ 239 (332)
T PRK08605 187 ------------------------YVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKK---GAVFVNCARGS 239 (332)
T ss_pred ------------------------hccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCC---CcEEEECCCCc
Confidence 1223357888899999999999986533333 334455676 78999999997
Q ss_pred ccc
Q 019978 201 EAE 203 (333)
Q Consensus 201 ~~~ 203 (333)
..+
T Consensus 240 ~vd 242 (332)
T PRK08605 240 LVD 242 (332)
T ss_pred ccC
Confidence 765
No 106
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.32 E-value=1.7e-05 Score=76.69 Aligned_cols=174 Identities=17% Similarity=0.121 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhh--hhHHHHHhhhhhHHHHhhhcccccchhhhhhcCCcccchhh
Q 019978 54 WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATA--EHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEI 131 (333)
Q Consensus 54 mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~--~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~ 131 (333)
||+.||..++.+ | ++|++|+++++..++++. +...+.+... +++....+. +..- . +
T Consensus 1 MG~giA~~~a~~-G-----~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~g~-~~~~-------~--~--- 58 (314)
T PRK08269 1 MGQGIALAFAFA-G-----HDVTLIDFKPRDAAGWRALDAEARAEIERT---LAALVALGR-IDAA-------Q--A--- 58 (314)
T ss_pred CcHHHHHHHHhC-C-----CeEEEEeCCcccchhhHHHHHHHHHHHHHH---HHHHHHcCC-CChh-------h--H---
Confidence 799999999999 8 999999999964321000 0000011110 111111111 1100 0 0
Q ss_pred hhccccccCCCCCCCCeEEecC--HHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeecCcccccCC
Q 019978 132 LKDGFCLNMIDTPLCPLKVVTN--LQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVEAELEAV 207 (333)
Q Consensus 132 ~~~~~~~~~~~~~~~~i~~t~d--~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~ 207 (333)
+..+.+++++++ +.+++++||+||.+||.. ....++.++.+.+++ ++++.|.+.++...
T Consensus 59 ----------~~~~~~i~~~~~~~~~~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~---~~ilaSntS~~~~~---- 121 (314)
T PRK08269 59 ----------DAVLARIAVVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDA---DAIIASTTSTFLVT---- 121 (314)
T ss_pred ----------HHHHhCeEeecCcchHHHhccCCEEEECCcCCHHHHHHHHHHHHhhCCC---CcEEEEccccCCHH----
Confidence 011236777654 667889999999999986 588888999998887 78887777766653
Q ss_pred ccCCCHHHHHHhHhCCCCCcEE-EEcCCCchHHHhccCceeEEE--eCChhhHHHHHHHhCCCCeEEEecCChhH
Q 019978 208 PRIITPTQMINRATGVPIENIL-YLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (333)
Q Consensus 208 ~~~~~~se~i~~~lg~~~~~~~-vl~GP~~a~ev~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~v~~s~Di~g 279 (333)
.|.+.+..+..-+. -..-|.+... ...++. ..+++..+.+..+|...+..+....|.-|
T Consensus 122 --------~la~~~~~p~r~~g~Hf~~Pp~~~~-----lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~G 183 (314)
T PRK08269 122 --------DLQRHVAHPERFLNAHWLNPAYLMP-----LVEVSPSDATDPAVVDRLAALLERIGKVPVVCGPSPG 183 (314)
T ss_pred --------HHHhhcCCcccEEEEecCCccccCc-----eEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCC
Confidence 24454433211111 1112221110 011111 23556778888888877766655566545
No 107
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.28 E-value=7.4e-06 Score=79.44 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=33.4
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (333)
..+||+|||+|.||+.+|..++.. |. .+|.|+|++++.+
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~-gl----~~i~LvDi~~~~~ 43 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLK-NL----GDVVLFDIVKNIP 43 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CC----CeEEEEeCCCchh
Confidence 447999999999999999999887 72 2799999999864
No 108
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.18 E-value=1.9e-05 Score=76.47 Aligned_cols=105 Identities=14% Similarity=0.224 Sum_probs=69.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
.+||+|||+|.+|..+|..++.. |. .++.|+|++++.++.. .+.-.+ ... .
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~-~~----~~l~L~Di~~~~~~g~-------~lDl~~-----------~~~-~----- 55 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQK-NL----GDVVLYDVIKGVPQGK-------ALDLKH-----------FST-L----- 55 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC-CC----CeEEEEECCCccchhH-------HHHHhh-----------hcc-c-----
Confidence 47999999999999999999887 62 4799999998764321 011110 000 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cc--------------hhHHHHHHHHHhhhhc
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWKE 186 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaV--ps--------------~~~~~vl~~i~~~l~~ 186 (333)
.. ....+..++|.+ ++.+||+||++. |. ..+.++++++.++.+
T Consensus 56 ---~~----------------~~~~i~~~~d~~-~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p- 114 (319)
T PTZ00117 56 ---VG----------------SNINILGTNNYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCP- 114 (319)
T ss_pred ---cC----------------CCeEEEeCCCHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-
Confidence 00 001455667877 689999999988 33 346677777777754
Q ss_pred cCCCCEEEEeeecC
Q 019978 187 RITVPVIISLAKGV 200 (333)
Q Consensus 187 ~~~~~~Ivs~~kGi 200 (333)
+..++..+|-.
T Consensus 115 ---~a~vivvsNP~ 125 (319)
T PTZ00117 115 ---NAFVICVTNPL 125 (319)
T ss_pred ---CeEEEEecChH
Confidence 45666666644
No 109
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.14 E-value=1.5e-05 Score=80.00 Aligned_cols=100 Identities=27% Similarity=0.352 Sum_probs=71.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
++|+|||.|+.|.+-|..|.+. | ++|++--|... ++. ++ ...+..
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdS-G-----vnVvvglr~~~-id~----------~~------------~s~~kA------ 81 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDS-G-----LDISYALRKEA-IAE----------KR------------ASWRKA------ 81 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccc-c-----ceeEEeccccc-ccc----------cc------------chHHHH------
Confidence 7999999999999999999988 8 88887666541 110 00 000000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~ 203 (333)
. .+|| .+ .+.++++..||+|++.+|......+.+++.+++++ ++ .+.++-|+...
T Consensus 82 ---~-----~dGF------------~v-~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~---Ga-~L~fsHGFni~ 136 (487)
T PRK05225 82 ---T-----ENGF------------KV-GTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQ---GA-ALGYSHGFNIV 136 (487)
T ss_pred ---H-----hcCC------------cc-CCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCC---CC-EEEecCCceee
Confidence 0 0222 22 45788999999999999999888888999999987 44 55677787754
No 110
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.12 E-value=2.2e-05 Score=72.73 Aligned_cols=147 Identities=16% Similarity=0.138 Sum_probs=93.7
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
|+|+.||.|.||..+...|.+. | |+|+.|+++++.++++..++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~-g-----hdvV~yD~n~~av~~~~~~g------------------------------- 43 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG-G-----HDVVGYDVNQTAVEELKDEG------------------------------- 43 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC-C-----CeEEEEcCCHHHHHHHHhcC-------------------------------
Confidence 7899999999999999999999 8 99999999998765432111
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHH---HhcCCCEEEEecCch-hHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE---AVWDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~e---a~~~aDlIIlaVps~-~~~~vl~~i~~~l~~~~~~~~Ivs~~kG 199 (333)
.+..+++++ -+.....|.+.||.. .+.++++++++.+.. +.+||.--|.
T Consensus 44 ------------------------a~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~la~~L~~---GDivIDGGNS 96 (300)
T COG1023 44 ------------------------ATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDLAPLLSA---GDIVIDGGNS 96 (300)
T ss_pred ------------------------CccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHHHhhcCC---CCEEEECCcc
Confidence 111122332 345678999999987 899999999999987 5677765544
Q ss_pred CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCC
Q 019978 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRR 266 (333)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~ 266 (333)
-..++ . +.-++..... ..+. =.|.+-.....+.-++ .++.++++..+++..+|..
T Consensus 97 ~y~Ds--------~-rr~~~l~~kg-i~fl-D~GTSGG~~G~~~G~~-lMiGG~~~a~~~~~pif~~ 151 (300)
T COG1023 97 NYKDS--------L-RRAKLLAEKG-IHFL-DVGTSGGVWGAERGYC-LMIGGDEEAVERLEPIFKA 151 (300)
T ss_pred chHHH--------H-HHHHHHHhcC-CeEE-eccCCCCchhhhcCce-EEecCcHHHHHHHHHHHHh
Confidence 33321 0 1111111111 1121 1233322222222234 3567788888888888875
No 111
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.10 E-value=5.3e-05 Score=63.36 Aligned_cols=122 Identities=19% Similarity=0.180 Sum_probs=73.8
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
|||+|+|+ |.||..++..+.+..+ +++. .++++++... + +....+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~-----~~lv~~v~~~~~~~~-------------g-----------~d~g~~~--- 48 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPG-----FELVGAVDRKPSAKV-------------G-----------KDVGELA--- 48 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTT-----EEEEEEEETTTSTTT-------------T-----------SBCHHHC---
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCC-----cEEEEEEecCCcccc-------------c-----------chhhhhh---
Confidence 79999999 9999999999988524 6744 5677662211 0 0011100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
+ . ....+.+++|+++.++.+|++|-++-+....+.++...++ +..+|+.+.|+.
T Consensus 49 -~--~-----------------~~~~~~v~~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~------g~~~ViGTTG~~ 102 (124)
T PF01113_consen 49 -G--I-----------------GPLGVPVTDDLEELLEEADVVIDFTNPDAVYDNLEYALKH------GVPLVIGTTGFS 102 (124)
T ss_dssp -T--S-----------------ST-SSBEBS-HHHHTTH-SEEEEES-HHHHHHHHHHHHHH------T-EEEEE-SSSH
T ss_pred -C--c-----------------CCcccccchhHHHhcccCCEEEEcCChHHhHHHHHHHHhC------CCCEEEECCCCC
Confidence 0 0 0125678899999999999999999776666666665543 467888888987
Q ss_pred ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCc
Q 019978 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNI 236 (333)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~ 236 (333)
.+. .+.+++.-. ...++..|||
T Consensus 103 ~~~---------~~~l~~~a~----~~~vl~a~Nf 124 (124)
T PF01113_consen 103 DEQ---------IDELEELAK----KIPVLIAPNF 124 (124)
T ss_dssp HHH---------HHHHHHHTT----TSEEEE-SSS
T ss_pred HHH---------HHHHHHHhc----cCCEEEeCCC
Confidence 652 133444321 1457777775
No 112
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.06 E-value=2.6e-05 Score=66.73 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=33.2
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
|||+|||+ |.+|+++|..|... +.. .++.|+|++++.++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~-~l~---~ei~L~D~~~~~~~ 40 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ-GLA---DEIVLIDINEDKAE 40 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT-TTS---SEEEEEESSHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhC-CCC---CceEEeccCcccce
Confidence 79999999 99999999999988 621 47999999987543
No 113
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=98.06 E-value=3.1e-05 Score=74.16 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=30.3
Q ss_pred EEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcch
Q 019978 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSV 85 (333)
Q Consensus 46 I~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~ 85 (333)
|+|||+|.||+.+|..++.. | . +|.++|++++.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~-~-----l~eV~L~Di~e~~~ 35 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK-E-----LGDVVLLDIVEGLP 35 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC-C-----CcEEEEEeCCCcHH
Confidence 68999999999999999988 6 5 999999998643
No 114
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.06 E-value=2.3e-05 Score=73.88 Aligned_cols=82 Identities=22% Similarity=0.242 Sum_probs=59.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCee-EEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
||||+|||+|.||..++..+.+. + . +.+ +.+|++++++++++. + .
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~-~-~--~~elv~v~d~~~~~a~~~a---------~----------------~----- 46 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSG-R-I--NAELYAFYDRNLEKAENLA---------S----------------K----- 46 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcC-C-C--CeEEEEEECCCHHHHHHHH---------H----------------h-----
Confidence 48999999999999999998765 2 0 144 557888876543210 0 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHh
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR 182 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~ 182 (333)
+ .....+++++.+.++|+|++|+|+....+++.++..
T Consensus 47 ----~--------------------~~~~~~~~~ell~~~DvVvi~a~~~~~~~~~~~al~ 83 (265)
T PRK13304 47 ----T--------------------GAKACLSIDELVEDVDLVVECASVNAVEEVVPKSLE 83 (265)
T ss_pred ----c--------------------CCeeECCHHHHhcCCCEEEEcCChHHHHHHHHHHHH
Confidence 0 123456788877899999999999988888877654
No 115
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.05 E-value=6.3e-05 Score=70.60 Aligned_cols=106 Identities=23% Similarity=0.277 Sum_probs=70.8
Q ss_pred EEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcCC
Q 019978 46 IVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (333)
Q Consensus 46 I~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (333)
|+|||+ |.||..++..|+.. |.+.. .+|.++|+++++++....+ +++... ...
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-~~~~~-~el~L~D~~~~~l~~~~~d------------l~~~~~---~~~--------- 54 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-SVLLA-IELVLYDIDEEKLKGVAMD------------LQDAVE---PLA--------- 54 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-CCCcc-eEEEEEeCCcccchHHHHH------------HHHhhh---hcc---------
Confidence 689999 99999999999987 52111 5899999998776532211 111000 000
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------hhHHHHHHHHHhhhhccC
Q 019978 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKERI 188 (333)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps----------------~~~~~vl~~i~~~l~~~~ 188 (333)
..++..++|+.+++++||+||++.-. ..++++++++.++.+
T Consensus 55 --------------------~~~i~~~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p--- 111 (263)
T cd00650 55 --------------------DIKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSP--- 111 (263)
T ss_pred --------------------CcEEEECCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC---
Confidence 02577788888889999999996522 247777777777664
Q ss_pred CCCEEEEeeecCc
Q 019978 189 TVPVIISLAKGVE 201 (333)
Q Consensus 189 ~~~~Ivs~~kGi~ 201 (333)
+..++..+|-..
T Consensus 112 -~a~~i~~tNP~d 123 (263)
T cd00650 112 -DAWIIVVSNPVD 123 (263)
T ss_pred -CeEEEEecCcHH
Confidence 567777776544
No 116
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.04 E-value=3e-05 Score=73.42 Aligned_cols=83 Identities=22% Similarity=0.269 Sum_probs=58.4
Q ss_pred CCceEEEECCCHHHHHHHHHHHHh-cCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDS-YGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~-~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (333)
.++||+|||+|.||..++..|.+. .+ +++. +|+|++++.+++. + .+.
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~-----~el~aV~dr~~~~a~~~a---------~-------------~~g---- 53 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPG-----LTLSAVAVRDPQRHADFI---------W-------------GLR---- 53 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCC-----eEEEEEECCCHHHHHHHH---------H-------------hcC----
Confidence 458999999999999999999762 13 6765 7888876543210 0 000
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHh
Q 019978 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR 182 (333)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~ 182 (333)
.....+++++.+.++|+|++|+|.....++......
T Consensus 54 ---------------------------~~~~~~~~eell~~~D~Vvi~tp~~~h~e~~~~aL~ 89 (271)
T PRK13302 54 ---------------------------RPPPVVPLDQLATHADIVVEAAPASVLRAIVEPVLA 89 (271)
T ss_pred ---------------------------CCcccCCHHHHhcCCCEEEECCCcHHHHHHHHHHHH
Confidence 012346677777889999999999988888766543
No 117
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=98.01 E-value=0.00013 Score=70.14 Aligned_cols=194 Identities=14% Similarity=0.123 Sum_probs=120.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
++||.-||||.+|..-...+|... |...|++++.+..++.+++.+. -|.|.|++.
T Consensus 1 ~~kiccigagyvggptcavia~kc----p~i~vtvvd~s~~ri~~wnsd~-----------------lpiyepgld---- 55 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKC----PDIEVTVVDISVPRINAWNSDK-----------------LPIYEPGLD---- 55 (481)
T ss_pred CceEEEecCcccCCcchheeeecC----CceEEEEEecCchHhhcccCCC-----------------CcccCCCHH----
Confidence 479999999999999988887763 2267999999998877766443 256777653
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc---------------hhHHHHHHHHHhhhhcc
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS---------------TETKEVFEEISRYWKER 187 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps---------------~~~~~vl~~i~~~l~~~ 187 (333)
|+++. |.+ .++.+++|.+.++..+|+|++.|.. .+.++..+.|+.+-..
T Consensus 56 -------evv~~--crg------knlffstdiekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~- 119 (481)
T KOG2666|consen 56 -------EVVKQ--CRG------KNLFFSTDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVS- 119 (481)
T ss_pred -------HHHHH--hcC------CceeeecchHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccC-
Confidence 23322 111 2688999999999999999998743 2577777777766443
Q ss_pred CCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCC--CCCcEEEEcCCCchHHHhc--c--CceeEEEeCCh-----hh
Q 019978 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGV--PIENILYLGGPNIASEIYN--K--EYANARICGAE-----KW 256 (333)
Q Consensus 188 ~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~--~~~~~~vl~GP~~a~ev~~--~--~~~~~~~~~~~-----~~ 256 (333)
+++++ -|...+- ...|-|...+.. +...+-+++.|.|..|... . .|--+.+++.+ ..
T Consensus 120 --~kivv--ekstvpv--------~aaesi~~il~~n~~~i~fqilsnpeflaegtaikdl~npdrvligg~etpeg~~a 187 (481)
T KOG2666|consen 120 --DKIVV--EKSTVPV--------KAAESIEKILNHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQA 187 (481)
T ss_pred --CeEEE--eeccccc--------hHHHHHHHHHhcCCCCceeEeccChHHhcccchhhhhcCCceEEECCCCChhHHHH
Confidence 44333 3333321 223556666632 2345779999999765332 1 13334554432 34
Q ss_pred HHHHHHHhCCC-CeEEEecCChhHHHHHHHHHHH
Q 019978 257 RKPLAKFLRRP-HFTVWDNGDLVTHEVMGGLKNV 289 (333)
Q Consensus 257 ~~~l~~ll~~~-~~~v~~s~Di~gve~~~alkNv 289 (333)
++.+..+++.= ...-.++.+....|+.+...|.
T Consensus 188 v~~l~~vyehwvp~~~iittntwsselsklaana 221 (481)
T KOG2666|consen 188 VQALKDVYEHWVPREQIITTNTWSSELSKLAANA 221 (481)
T ss_pred HHHHHHHHHhhCcccceeeccccHHHHHHHHHHH
Confidence 55555665531 1122356666677777766664
No 118
>PRK15076 alpha-galactosidase; Provisional
Probab=97.99 E-value=4.5e-05 Score=76.89 Aligned_cols=82 Identities=21% Similarity=0.182 Sum_probs=52.9
Q ss_pred CceEEEECCCHHHHHHHH--HHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 43 PLRIVGVGAGAWGSVFTA--MLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~--~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
++||+|||+|++|.+.+. .++.. ..+.. .+|.|+|+++++++.... .+.. .....
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~-~~l~~-~evvLvDid~er~~~~~~-----l~~~-------------~~~~~--- 57 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSV-PALRD-AEIALMDIDPERLEESEI-----VARK-------------LAESL--- 57 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhC-ccCCC-CEEEEECCCHHHHHHHHH-----HHHH-------------HHHhc---
Confidence 479999999999977766 55522 11221 689999999987653211 0111 01100
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP 169 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVp 169 (333)
.. ..++..++|..+++++||+||+++-
T Consensus 58 ----~~------------------~~~i~~ttD~~eal~dADfVv~ti~ 84 (431)
T PRK15076 58 ----GA------------------SAKITATTDRREALQGADYVINAIQ 84 (431)
T ss_pred ----CC------------------CeEEEEECCHHHHhCCCCEEeEeee
Confidence 00 0257888998899999999999763
No 119
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.98 E-value=0.00044 Score=66.09 Aligned_cols=164 Identities=28% Similarity=0.331 Sum_probs=103.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc-hhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS-VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~-~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
++|+|||.|+=|.+=|..|.++ | .+|++--|.... .++..
T Consensus 19 K~iaIIGYGsQG~ahalNLRDS-G-----lnViiGlr~g~~s~~kA~--------------------------------- 59 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDS-G-----LNVIIGLRKGSSSWKKAK--------------------------------- 59 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhc-C-----CcEEEEecCCchhHHHHH---------------------------------
Confidence 5999999999999999999999 8 898877776532 11100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHH-HHHhhhhccCCCCEEEEeeecCc
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFE-EISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~-~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
.+|| ++ -+.+|+++.||+|++-+|.....++++ +|.|.+++ +. .+.++-|+.
T Consensus 60 ----------~dGf------------~V-~~v~ea~k~ADvim~L~PDe~q~~vy~~~I~p~Lk~---G~-aL~FaHGfN 112 (338)
T COG0059 60 ----------EDGF------------KV-YTVEEAAKRADVVMILLPDEQQKEVYEKEIAPNLKE---GA-ALGFAHGFN 112 (338)
T ss_pred ----------hcCC------------Ee-ecHHHHhhcCCEEEEeCchhhHHHHHHHHhhhhhcC---Cc-eEEeccccc
Confidence 0222 22 346788999999999999999999998 89999987 44 566777877
Q ss_pred ccccCCccCCCHHHHHHhHhCCCCCcEEEE--cCCCchH--HHh--ccCceeEEEeCC-----hhhHHHHHHHhCC--CC
Q 019978 202 AELEAVPRIITPTQMINRATGVPIENILYL--GGPNIAS--EIY--NKEYANARICGA-----EKWRKPLAKFLRR--PH 268 (333)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl--~GP~~a~--ev~--~~~~~~~~~~~~-----~~~~~~l~~ll~~--~~ 268 (333)
.-. ...-+.....+..+ -||.+.. +-. .|.|+.+.+-.| .+.+..+..-.-. .|
T Consensus 113 ihf-------------~~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~sG~a~~~Ala~AkgiGg~RaG 179 (338)
T COG0059 113 IHF-------------GLIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQDASGKALDIALAYAKGIGGTRAG 179 (338)
T ss_pred eec-------------ceecCCccCcEEEEcCCCCcHHHHHHHHccCCceeEEEEEeCCCchHHHHHHHHHHhcCCCccc
Confidence 642 11112111222222 3777743 222 244666533221 1344444444432 22
Q ss_pred -----eEEEecCChhHHH--HHHHH
Q 019978 269 -----FTVWDNGDLVTHE--VMGGL 286 (333)
Q Consensus 269 -----~~v~~s~Di~gve--~~~al 286 (333)
|+-...+|+.|-+ +||.+
T Consensus 180 vieTTFkeEtetDLfGEQ~vLcGgl 204 (338)
T COG0059 180 VIETTFKEETETDLFGEQAVLCGGL 204 (338)
T ss_pred eEeeeeHHhhhcccccchhhhhhHH
Confidence 4445788999966 45443
No 120
>PLN02602 lactate dehydrogenase
Probab=97.96 E-value=0.00011 Score=72.20 Aligned_cols=67 Identities=9% Similarity=0.095 Sum_probs=45.8
Q ss_pred cccccccccchHHhhhHHHHhhccCCCCC-----ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 15 NGLIHHTNGSLEERLDELRRLMGKAEGDP-----LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
++-+|-.||-+- +...+.-||-.++.+| +||+|||+|.+|+++|..|+.. +.. .++.|+|++++.++
T Consensus 5 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~m~~~~~~KI~IIGaG~VG~~~a~~l~~~-~l~---~el~LiDi~~~~~~ 76 (350)
T PLN02602 5 SSASSLGPGGLD-LSQAFFKPIHNSSPPSPTRRHTKVSVVGVGNVGMAIAQTILTQ-DLA---DELALVDVNPDKLR 76 (350)
T ss_pred ccccccccchhh-hhhhhhhcccccccccccCCCCEEEEECCCHHHHHHHHHHHhC-CCC---CEEEEEeCCCchhh
Confidence 344455665555 4444444444444423 6999999999999999999877 621 37999999887653
No 121
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=97.95 E-value=6.7e-05 Score=72.56 Aligned_cols=95 Identities=26% Similarity=0.388 Sum_probs=68.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
-++|+|||.|+||..+|..|..- | .+|..|++..+.... ..
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~af-G-----~~V~~~~~~~~~~~~--------------------------~~------- 176 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTW-G-----FPLRCWSRSRKSWPG--------------------------VQ------- 176 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCCCCCCC--------------------------ce-------
Confidence 37999999999999999999876 8 899999986532100 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHhhhhccCCCCEEEEeeecC
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~-~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
......++++++.+||+|++++|.. .++.++. +....+++ ++++|.+.-|-
T Consensus 177 ------------------------~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 229 (312)
T PRK15469 177 ------------------------SFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPD---GAYLLNLARGV 229 (312)
T ss_pred ------------------------eecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCC---CcEEEECCCcc
Confidence 0111246888999999999999964 5666653 34445666 78999998885
Q ss_pred ccc
Q 019978 201 EAE 203 (333)
Q Consensus 201 ~~~ 203 (333)
...
T Consensus 230 vVd 232 (312)
T PRK15469 230 HVV 232 (312)
T ss_pred ccC
Confidence 544
No 122
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.91 E-value=4.9e-05 Score=74.75 Aligned_cols=154 Identities=14% Similarity=0.116 Sum_probs=98.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
+.|++||.|.||+-||..++++ | +.|.+|+|+.++.++. ++++. ..+.+
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~-G-----~~VavyNRt~~ktd~f--------~~~~~-----------~~k~i------ 52 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH-G-----YTVAVYNRTTEKTDEF--------LAERA-----------KGKNI------ 52 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc-C-----ceEEEEeCCHHHHHHH--------HHhCc-----------cCCCc------
Confidence 5799999999999999999999 8 9999999999877642 22210 01100
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-hhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps-~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~ 202 (333)
.+.+...++-..++...-|++.|++ ..+++++++|.|++.+ +-+||.--|....
T Consensus 53 ----------------------~~~~sieefV~~Le~PRkI~lMVkAG~~VD~~I~~L~p~Le~---gDIiIDGGNs~y~ 107 (473)
T COG0362 53 ----------------------VPAYSIEEFVASLEKPRKILLMVKAGTPVDAVIEQLLPLLEK---GDIIIDGGNSHYK 107 (473)
T ss_pred ----------------------cccCcHHHHHHHhcCCceEEEEEecCCcHHHHHHHHHhhcCC---CCEEEeCCCcCCc
Confidence 0112223344457788999999998 4689999999999988 6688887776665
Q ss_pred cccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhC
Q 019978 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLR 265 (333)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~ 265 (333)
++ ..+ ..++.... . ..+=.|-+-.+|.+...|+. +..++++.-+.++.+|.
T Consensus 108 DT-----~RR----~~eL~~~G-i-~FvG~GVSGGEeGA~~GPSi-MpGG~~eay~~v~pil~ 158 (473)
T COG0362 108 DT-----IRR----NKELSEKG-I-LFVGMGVSGGEEGARHGPSI-MPGGQKEAYELVAPILT 158 (473)
T ss_pred hH-----HHH----HHHHHhcC-C-eEEeccccccccccccCCCc-CCCCCHHHHHHHHHHHH
Confidence 53 111 12211111 1 11223555555665555653 55666666666666665
No 123
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.87 E-value=0.00011 Score=59.96 Aligned_cols=94 Identities=19% Similarity=0.218 Sum_probs=64.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
+||+|||+|.||......+.+. . ++.++. +++++++..++.. +
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~-~---~~~~v~~v~d~~~~~~~~~~---------~----------------------- 44 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS-S---PDFEVVAVCDPDPERAEAFA---------E----------------------- 44 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT-T---TTEEEEEEECSSHHHHHHHH---------H-----------------------
T ss_pred CEEEEECCcHHHHHHHHHHHhc-C---CCcEEEEEEeCCHHHHHHHH---------H-----------------------
Confidence 5899999999999999888776 2 125654 7788876543210 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
. ..+...+|.++.+. +.|+|++++|+....+.+...... +..| .+-|-+
T Consensus 45 --~--------------------~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~------g~~v-~~EKP~ 95 (120)
T PF01408_consen 45 --K--------------------YGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAKKALEA------GKHV-LVEKPL 95 (120)
T ss_dssp --H--------------------TTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHT------TSEE-EEESSS
T ss_pred --H--------------------hcccchhHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHc------CCEE-EEEcCC
Confidence 0 02346678888776 789999999999888888876652 3433 456655
Q ss_pred cc
Q 019978 201 EA 202 (333)
Q Consensus 201 ~~ 202 (333)
..
T Consensus 96 ~~ 97 (120)
T PF01408_consen 96 AL 97 (120)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 124
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=97.83 E-value=0.0005 Score=64.38 Aligned_cols=169 Identities=18% Similarity=0.151 Sum_probs=103.4
Q ss_pred CceEEEECCCH--------------------HHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhh
Q 019978 43 PLRIVGVGAGA--------------------WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSRED 102 (333)
Q Consensus 43 ~~kI~IIGaG~--------------------mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~ 102 (333)
+|||+|.|+|+ -|+.+|-.+|.. | |+|.|.+.+.+..+. +|
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA-G-----HDVVLaePn~d~~dd---~~---------- 61 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA-G-----HDVVLAEPNRDIMDD---EH---------- 61 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc-C-----CcEEeecCCccccCH---HH----------
Confidence 48899999986 378899999999 8 999999998875432 11
Q ss_pred HHHHhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHHHH
Q 019978 103 VLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEIS 181 (333)
Q Consensus 103 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~~i~ 181 (333)
.+.++ + ..+++++|-.++++.+++.++.+|-. .+-.+++.|.
T Consensus 62 -----------w~~ve----d----------------------AGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~ 104 (340)
T COG4007 62 -----------WKRVE----D----------------------AGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIAREIL 104 (340)
T ss_pred -----------HHHHH----h----------------------cCcEEecCchhhhhcceEEEEecccchhhHHHHHHHH
Confidence 11111 1 26778777778899999999999987 8999999999
Q ss_pred hhhhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCC--------CCcEEEEcCCCchHHHhccCceeEEEeCC
Q 019978 182 RYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP--------IENILYLGGPNIASEIYNKEYANARICGA 253 (333)
Q Consensus 182 ~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~--------~~~~~vl~GP~~a~ev~~~~~~~~~~~~~ 253 (333)
.++++ +.+|+. +=.+++-. +-..++..+-.+ .+|..+=.-|++-.-+..+..+...--..
T Consensus 105 ~hvpE---gAVicn-TCT~sp~v--------Ly~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~yviagr~t~g~elAT 172 (340)
T COG4007 105 EHVPE---GAVICN-TCTVSPVV--------LYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHYVIAGRSTEGKELAT 172 (340)
T ss_pred hhCcC---CcEecc-cccCchhH--------HHHHhhhhhcCchhhcCccccCCCCCCCCCCCceEEEeccCCCceeecc
Confidence 99987 665553 22222210 011122222111 12222212233221111122221111234
Q ss_pred hhhHHHHHHHhCCCCeEEEec-CChhH
Q 019978 254 EKWRKPLAKFLRRPHFTVWDN-GDLVT 279 (333)
Q Consensus 254 ~~~~~~l~~ll~~~~~~v~~s-~Di~g 279 (333)
+++.++..++.++.|..+|.. .|++.
T Consensus 173 eEQi~r~velaes~Gk~~yv~padv~s 199 (340)
T COG4007 173 EEQIERCVELAESTGKEVYVLPADVVS 199 (340)
T ss_pred HHHHHHHHHHHHhcCCceEecCHHHHH
Confidence 678999999999998887754 45444
No 125
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.83 E-value=0.00017 Score=69.47 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=33.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
|||+|||+|.+|+++|..|+.. |.. ++|.++++++++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~-g~~---~ev~l~D~~~~~~~ 39 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR-GLA---SEIVLVDINKAKAE 39 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCC---CEEEEEECCchhhh
Confidence 6999999999999999999988 621 47999999987543
No 126
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.83 E-value=6.6e-05 Score=73.16 Aligned_cols=95 Identities=23% Similarity=0.279 Sum_probs=68.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
-++|+|||.|.||..+|..|... | .+|..|+|+.+... ...
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~~---------------------------~~~------ 190 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGF-G-----MRILYYSRTRKPEA---------------------------EKE------ 190 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCCChhh---------------------------HHH------
Confidence 37999999999999999999877 7 89999999764210 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
. .... .++++.+..||+|++++|.. .+..++ ++....+++ ++++|.++-|-
T Consensus 191 ---~--------------------~~~~-~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~---ga~lIN~aRg~ 243 (333)
T PRK13243 191 ---L--------------------GAEY-RPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKP---TAILVNTARGK 243 (333)
T ss_pred ---c--------------------CCEe-cCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCC---CeEEEECcCch
Confidence 0 1222 46888899999999999964 455555 345555676 78899988775
Q ss_pred ccc
Q 019978 201 EAE 203 (333)
Q Consensus 201 ~~~ 203 (333)
..+
T Consensus 244 ~vd 246 (333)
T PRK13243 244 VVD 246 (333)
T ss_pred hcC
Confidence 544
No 127
>PRK07574 formate dehydrogenase; Provisional
Probab=97.82 E-value=0.00012 Score=72.76 Aligned_cols=96 Identities=20% Similarity=0.200 Sum_probs=69.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
++|+|||.|+||..+|..|..- | .+|..|+|.....+. ...
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~f-G-----~~V~~~dr~~~~~~~--------------------------~~~------- 233 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPF-D-----VKLHYTDRHRLPEEV--------------------------EQE------- 233 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCCCCchhh--------------------------Hhh-------
Confidence 7999999999999999999876 7 899999987632110 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHhhhhccCCCCEEEEeeecCc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~-~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
..+....++++++..||+|++++|-. .++.++. +....+++ ++++|+++-|=.
T Consensus 234 ----------------------~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~i 288 (385)
T PRK07574 234 ----------------------LGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKR---GSYLVNTARGKI 288 (385)
T ss_pred ----------------------cCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCC---CcEEEECCCCch
Confidence 02333357889999999999999954 5666663 34445666 789999887744
Q ss_pred cc
Q 019978 202 AE 203 (333)
Q Consensus 202 ~~ 203 (333)
.+
T Consensus 289 VD 290 (385)
T PRK07574 289 VD 290 (385)
T ss_pred hh
Confidence 43
No 128
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.80 E-value=0.00022 Score=68.99 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=34.6
Q ss_pred CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
...+||+|||+|.+|+++|..|+.. |.. .++.|+|++++.++
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~-~~~---~el~L~D~~~~~~~ 45 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQ-GIA---DELVIIDINKEKAE 45 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCCchhH
Confidence 3457999999999999999999988 721 27999999887654
No 129
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.78 E-value=0.0002 Score=68.76 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=33.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
+||+|||+|.+|+++|..|+.. |.. ++|.++++++++++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~-g~~---~ei~l~D~~~~~~~ 39 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ-GIA---DELVLIDINEEKAE 39 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCcchhh
Confidence 4899999999999999999988 621 48999999988654
No 130
>PLN03139 formate dehydrogenase; Provisional
Probab=97.76 E-value=0.00015 Score=72.04 Aligned_cols=97 Identities=22% Similarity=0.216 Sum_probs=69.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
-++|+|||.|+||..+|..|..- | .+|..|++.....+. ...
T Consensus 199 gktVGIVG~G~IG~~vA~~L~af-G-----~~V~~~d~~~~~~~~--------------------------~~~------ 240 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPF-N-----CNLLYHDRLKMDPEL--------------------------EKE------ 240 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHC-C-----CEEEEECCCCcchhh--------------------------Hhh------
Confidence 37999999999999999999876 7 899999987521110 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
..+...+++++.+..+|+|++++|.. .+..++ +++...+++ ++++|.++-|=
T Consensus 241 -----------------------~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 294 (386)
T PLN03139 241 -----------------------TGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKK---GVLIVNNARGA 294 (386)
T ss_pred -----------------------cCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCC---CeEEEECCCCc
Confidence 02333457889999999999999953 566665 334455666 78999988774
Q ss_pred ccc
Q 019978 201 EAE 203 (333)
Q Consensus 201 ~~~ 203 (333)
..+
T Consensus 295 iVD 297 (386)
T PLN03139 295 IMD 297 (386)
T ss_pred hhh
Confidence 443
No 131
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.74 E-value=8.4e-05 Score=63.39 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=33.6
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
..++|+|+|+|.||.+++..|++. | .++|++|+|+++.++
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~-g----~~~v~v~~r~~~~~~ 57 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAEL-G----AAKIVIVNRTLEKAK 57 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-C----CCEEEEEcCCHHHHH
Confidence 347999999999999999999887 5 168999999986554
No 132
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.73 E-value=3.9e-05 Score=70.55 Aligned_cols=119 Identities=23% Similarity=0.303 Sum_probs=82.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
.||+|+|.|-.|+++|..||.. | ++|.+||..++++.. .|..+- + .++++..++ .+.+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~-G-----yqVqlYDI~e~Ql~~----ALen~~---K-el~~Lee~g-~lrG------- 61 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS-G-----YQVQLYDILEKQLQT----ALENVE---K-ELRKLEEHG-LLRG------- 61 (313)
T ss_pred cceeEeecccccchHHHHHhcc-C-----ceEEEeeccHHHHHH----HHHHHH---H-HHHHHHHhh-hhcc-------
Confidence 5999999999999999999999 8 999999999877542 111111 1 133332222 1221
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
.+.++| ++..|..+++++|++++|=.|-.|+|.. ....+++++...+.+ .+++-|.+..+.
T Consensus 62 -nlsa~e-------------qla~is~t~~l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~---~tIlaSSTSt~m 124 (313)
T KOG2305|consen 62 -NLSADE-------------QLALISGTTSLNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADP---TTILASSTSTFM 124 (313)
T ss_pred -CccHHH-------------HHHHHhCCccHHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCC---ceEEeccccccC
Confidence 233322 3346778899999999999999999997 578888999888876 454444443333
No 133
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.72 E-value=0.00011 Score=65.14 Aligned_cols=97 Identities=23% Similarity=0.257 Sum_probs=64.1
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
.-++|+|||.|.+|..+|..+..- | .+|..|+|....... ...
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~f-G-----~~V~~~d~~~~~~~~--------------------------~~~----- 77 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAF-G-----MRVIGYDRSPKPEEG--------------------------ADE----- 77 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHT-T------EEEEEESSCHHHHH--------------------------HHH-----
T ss_pred CCCEEEEEEEcCCcCeEeeeeecC-C-----ceeEEecccCChhhh--------------------------ccc-----
Confidence 348999999999999999999876 8 899999999853210 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeec
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG 199 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kG 199 (333)
..+ ...++++.+..||+|++++|.. ....++ ++.-..+++ ++++|+++.|
T Consensus 78 ------------------------~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~---ga~lvN~aRG 129 (178)
T PF02826_consen 78 ------------------------FGV-EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKP---GAVLVNVARG 129 (178)
T ss_dssp ------------------------TTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTT---TEEEEESSSG
T ss_pred ------------------------ccc-eeeehhhhcchhhhhhhhhccccccceeeeeeeeecccc---ceEEEeccch
Confidence 022 2357889999999999999953 233332 222233455 7889998877
Q ss_pred Cccc
Q 019978 200 VEAE 203 (333)
Q Consensus 200 i~~~ 203 (333)
=..+
T Consensus 130 ~~vd 133 (178)
T PF02826_consen 130 ELVD 133 (178)
T ss_dssp GGB-
T ss_pred hhhh
Confidence 4443
No 134
>PRK06444 prephenate dehydrogenase; Provisional
Probab=97.72 E-value=7.2e-05 Score=67.78 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=21.6
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcC
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYG 67 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G 67 (333)
|||+|||+ |.||..++..|.++ |
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~-g 24 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN-G 24 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC-C
Confidence 69999999 99999999999888 7
No 135
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.69 E-value=9.4e-05 Score=70.69 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=32.5
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (333)
-++|+|+|+|.+|.++|..|... | .+|++++|++++
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~-G-----~~V~v~~R~~~~ 186 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSAL-G-----ARVFVGARSSAD 186 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHC-C-----CEEEEEeCCHHH
Confidence 36999999999999999999988 8 899999998754
No 136
>PRK06436 glycerate dehydrogenase; Provisional
Probab=97.65 E-value=0.00028 Score=68.04 Aligned_cols=92 Identities=18% Similarity=0.277 Sum_probs=64.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
-++|+|||.|+||..+|..+..- | .+|..|+|+... + +.
T Consensus 122 gktvgIiG~G~IG~~vA~~l~af-G-----~~V~~~~r~~~~-~-----------------------------~~----- 160 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAF-G-----MNIYAYTRSYVN-D-----------------------------GI----- 160 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCCcc-c-----------------------------Cc-----
Confidence 37999999999999999987655 7 899999986421 0 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHhhhhccCCCCEEEEeeecC
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~-~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
. ....++++.+..||+|++++|.. .++.++. +....+++ ++++|.++-|=
T Consensus 161 ------------------------~-~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~---ga~lIN~sRG~ 212 (303)
T PRK06436 161 ------------------------S-SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRK---GLAIINVARAD 212 (303)
T ss_pred ------------------------c-cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCC---CeEEEECCCcc
Confidence 0 01246788889999999999964 4554442 23344566 78899888774
Q ss_pred ccc
Q 019978 201 EAE 203 (333)
Q Consensus 201 ~~~ 203 (333)
...
T Consensus 213 ~vd 215 (303)
T PRK06436 213 VVD 215 (303)
T ss_pred ccC
Confidence 443
No 137
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=97.64 E-value=0.00063 Score=63.83 Aligned_cols=106 Identities=19% Similarity=0.228 Sum_probs=62.9
Q ss_pred HHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCcE---EEE
Q 019978 155 QEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI---LYL 231 (333)
Q Consensus 155 ~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~---~vl 231 (333)
.++++++|+||+|||...+.++++++.+++++ +++|+.++ ++- ..+-+.+++.++.. ..+ -=+
T Consensus 40 ~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~---~~iv~Dv~-SvK---------~~~~~~~~~~~~~~-~~~v~~HPM 105 (258)
T PF02153_consen 40 IEAVEDADLVVLAVPVSAIEDVLEEIAPYLKP---GAIVTDVG-SVK---------APIVEAMERLLPEG-VRFVGGHPM 105 (258)
T ss_dssp HHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-T---TSEEEE---S-C---------HHHHHHHHHHHTSS-GEEEEEEES
T ss_pred HhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCC---CcEEEEeC-CCC---------HHHHHHHHHhcCcc-cceeecCCC
Confidence 46789999999999999999999999999887 77776553 211 12334556666511 111 123
Q ss_pred cCC-----CchH-HHhccCceeEEEeC--ChhhHHHHHHHhCCCCeEEEec
Q 019978 232 GGP-----NIAS-EIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDN 274 (333)
Q Consensus 232 ~GP-----~~a~-ev~~~~~~~~~~~~--~~~~~~~l~~ll~~~~~~v~~s 274 (333)
.|| ..+. +..++.+..++... +.+.++.+++++...|.++...
T Consensus 106 ~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~ 156 (258)
T PF02153_consen 106 AGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEM 156 (258)
T ss_dssp CSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE-
T ss_pred CCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEc
Confidence 455 2221 33345555444332 3467899999999888888754
No 138
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.62 E-value=0.00055 Score=66.38 Aligned_cols=171 Identities=11% Similarity=0.095 Sum_probs=102.8
Q ss_pred chHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhH
Q 019978 24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (333)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~ 103 (333)
++..-|.++..--.|.+ ..+|+|||-|+||..+|..|.+. | |.|...+|++ .+.+. +
T Consensus 35 ~i~d~~~~~~s~~~~k~--tl~IaIIGfGnmGqflAetli~a-G-----h~li~hsRsd--yssaa---------~---- 91 (480)
T KOG2380|consen 35 QIFDYMVSEDSIEQWKA--TLVIAIIGFGNMGQFLAETLIDA-G-----HGLICHSRSD--YSSAA---------E---- 91 (480)
T ss_pred hhhhcccCcchhhhccc--ceEEEEEecCcHHHHHHHHHHhc-C-----ceeEecCcch--hHHHH---------H----
Confidence 34444444443333332 46999999999999999999999 8 9999999986 22211 1
Q ss_pred HHHhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhh
Q 019978 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY 183 (333)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~ 183 (333)
+|-.. ..+...|+ .-+..|+|++||..-.++.+++..-+.
T Consensus 92 --------~yg~~------------------------------~ft~lhdl--cerhpDvvLlctsilsiekilatypfq 131 (480)
T KOG2380|consen 92 --------KYGSA------------------------------KFTLLHDL--CERHPDVVLLCTSILSIEKILATYPFQ 131 (480)
T ss_pred --------Hhccc------------------------------ccccHHHH--HhcCCCEEEEEehhhhHHHHHHhcCch
Confidence 01000 11112232 225789999999999999999988765
Q ss_pred -hhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCc--EEEEcCCCchHHHhccCceeEE-E-eC----Ch
Q 019978 184 -WKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN--ILYLGGPNIASEIYNKEYANAR-I-CG----AE 254 (333)
Q Consensus 184 -l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~--~~vl~GP~~a~ev~~~~~~~~~-~-~~----~~ 254 (333)
++. +++++..+.--.+ .-+.+.+.+|....- .--+.||.....-.+|.|-... . .+ .+
T Consensus 132 rlrr---gtlfvdvlSvKef----------ek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ 198 (480)
T KOG2380|consen 132 RLRR---GTLFVDVLSVKEF----------EKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRP 198 (480)
T ss_pred hhcc---ceeEeeeeecchh----------HHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccch
Confidence 554 6666654422111 224556667643111 1234678754444555554322 1 22 25
Q ss_pred hhHHHHHHHhCCCCeE
Q 019978 255 KWRKPLAKFLRRPHFT 270 (333)
Q Consensus 255 ~~~~~l~~ll~~~~~~ 270 (333)
+..+.+-++|.+.+-+
T Consensus 199 ercE~fleIf~cegck 214 (480)
T KOG2380|consen 199 ERCEFFLEIFACEGCK 214 (480)
T ss_pred HHHHHHHHHHHhcCCe
Confidence 6788888888887643
No 139
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.62 E-value=0.00015 Score=70.04 Aligned_cols=94 Identities=23% Similarity=0.284 Sum_probs=62.0
Q ss_pred CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
.+..+|+|||+|.||...+..+....+ ..+|++|+|++++++++.. .+.+ . +
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~----~~~V~V~~Rs~~~a~~~a~-----~~~~--------------~-g---- 174 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRP----IKQVRVWGRDPAKAEALAA-----ELRA--------------Q-G---- 174 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCC----CCEEEEEcCCHHHHHHHHH-----HHHh--------------c-C----
Confidence 456799999999999999986654212 1689999999877653211 0000 0 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEE
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVII 194 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Iv 194 (333)
..+.+..++++++.+||+|+.++++. ..++.. ..+++ ++.|.
T Consensus 175 -------------------------~~~~~~~~~~~av~~aDIVi~aT~s~--~pvl~~--~~l~~---g~~i~ 216 (314)
T PRK06141 175 -------------------------FDAEVVTDLEAAVRQADIISCATLST--EPLVRG--EWLKP---GTHLD 216 (314)
T ss_pred -------------------------CceEEeCCHHHHHhcCCEEEEeeCCC--CCEecH--HHcCC---CCEEE
Confidence 02445678888899999999999987 333322 34555 56443
No 140
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.61 E-value=0.00012 Score=62.06 Aligned_cols=40 Identities=25% Similarity=0.280 Sum_probs=34.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (333)
..++.|||+|-+|.+++..|+.. |. .+|++++|+.+++++
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~-g~----~~i~i~nRt~~ra~~ 51 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAAL-GA----KEITIVNRTPERAEA 51 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHT-TS----SEEEEEESSHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-CC----CEEEEEECCHHHHHH
Confidence 36999999999999999999998 82 359999999887654
No 141
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.61 E-value=0.00022 Score=68.71 Aligned_cols=97 Identities=21% Similarity=0.243 Sum_probs=63.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
.++|+|||+|.||..++..|... | .++|++++|++++++++.. + +..
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~-g----~~~V~v~~r~~~ra~~la~--------~--------------~g~------ 224 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAK-G----VAEITIANRTYERAEELAK--------E--------------LGG------ 224 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHc-C----CCEEEEEeCCHHHHHHHHH--------H--------------cCC------
Confidence 47999999999999999999875 4 1689999999875432210 0 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~k 198 (333)
.....+++.+++.++|+||.|+++......++.+...... ++.+++.++.
T Consensus 225 ------------------------~~~~~~~~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~--~~~~viDlav 274 (311)
T cd05213 225 ------------------------NAVPLDELLELLNEADVVISATGAPHYAKIVERAMKKRSG--KPRLIVDLAV 274 (311)
T ss_pred ------------------------eEEeHHHHHHHHhcCCEEEECCCCCchHHHHHHHHhhCCC--CCeEEEEeCC
Confidence 1111235667788999999999988775555544332211 1456666653
No 142
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.59 E-value=0.0007 Score=65.50 Aligned_cols=39 Identities=13% Similarity=0.132 Sum_probs=32.7
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
+||+|||+|.+|+++|..|+.. |.. .++.|+|++++.++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~-~~~---~el~LiD~~~~~~~ 42 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK-GLA---DELVLVDVVEDKLK 42 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCccHHH
Confidence 6999999999999999999887 621 47999999887543
No 143
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.58 E-value=0.00059 Score=65.84 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=29.8
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
|||+|+|+ |..|..++..|+.. |.. .+|+++++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~-g~~---~~v~lvd~~~ 36 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE-DVV---KEINLISRPK 36 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC-CCC---CEEEEEECcc
Confidence 79999998 99999999999988 721 2599999965
No 144
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.55 E-value=0.00023 Score=73.54 Aligned_cols=95 Identities=22% Similarity=0.268 Sum_probs=67.6
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
++|+|||.|.||..+|..+..- | .+|..|++.... +. ...
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f-G-----~~V~~~d~~~~~-~~--------------------------~~~------- 178 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF-G-----MKVLAYDPYISP-ER--------------------------AEQ------- 178 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCCCCh-hH--------------------------HHh-------
Confidence 7999999999999999999876 7 899999885321 10 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecCc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
+ .+...+++++.+..||+|++++|.. .++.++ ++....+++ ++++|.++-|=.
T Consensus 179 --~--------------------g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~~ 233 (525)
T TIGR01327 179 --L--------------------GVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKK---GVIIVNCARGGI 233 (525)
T ss_pred --c--------------------CCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCC---CeEEEEcCCCce
Confidence 0 2333457889999999999999965 555555 233335666 788999887744
Q ss_pred cc
Q 019978 202 AE 203 (333)
Q Consensus 202 ~~ 203 (333)
.+
T Consensus 234 vd 235 (525)
T TIGR01327 234 ID 235 (525)
T ss_pred eC
Confidence 43
No 145
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.54 E-value=0.00086 Score=55.56 Aligned_cols=99 Identities=19% Similarity=0.183 Sum_probs=61.9
Q ss_pred eEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeE-EEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 45 RIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 45 kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
||+|+| .|++|..+...|.+. - ..++ .+++++.+.-+.+. .. .+ ...+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-p----~~e~~~~~~~~~~~g~~~~---------~~---------~~-~~~~~----- 51 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-P----DFELVALVSSSRSAGKPLS---------EV---------FP-HPKGF----- 51 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-S----TEEEEEEEESTTTTTSBHH---------HT---------TG-GGTTT-----
T ss_pred CEEEECCCCHHHHHHHHHHhcC-C----CccEEEeeeeccccCCeee---------hh---------cc-ccccc-----
Confidence 799999 799999999999986 2 1554 45566552222111 10 00 01100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEec-CHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVT-NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~-d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
..+.+.+ +.+ .+.++|+||+|+|.....++...+. +. +..||.++.-+.
T Consensus 52 -----------------------~~~~~~~~~~~-~~~~~Dvvf~a~~~~~~~~~~~~~~---~~---g~~ViD~s~~~R 101 (121)
T PF01118_consen 52 -----------------------EDLSVEDADPE-ELSDVDVVFLALPHGASKELAPKLL---KA---GIKVIDLSGDFR 101 (121)
T ss_dssp -----------------------EEEBEEETSGH-HHTTESEEEE-SCHHHHHHHHHHHH---HT---TSEEEESSSTTT
T ss_pred -----------------------cceeEeecchh-HhhcCCEEEecCchhHHHHHHHHHh---hC---CcEEEeCCHHHh
Confidence 0223333 444 4689999999999999999888874 34 678888875554
Q ss_pred c
Q 019978 202 A 202 (333)
Q Consensus 202 ~ 202 (333)
.
T Consensus 102 ~ 102 (121)
T PF01118_consen 102 L 102 (121)
T ss_dssp T
T ss_pred C
Confidence 3
No 146
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.52 E-value=0.00052 Score=64.47 Aligned_cols=95 Identities=18% Similarity=0.231 Sum_probs=64.3
Q ss_pred CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
+|||+|+|+ |.||..++..+.+. . +.++. +++++++.... . .
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~-~----~~elvav~d~~~~~~~~-------------------------~-~----- 44 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA-E----DLELVAAVDRPGSPLVG-------------------------Q-G----- 44 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC-C----CCEEEEEEecCCccccc-------------------------c-C-----
Confidence 489999998 99999999888764 2 15544 57777653211 0 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
. ..+...+|+++.++++|+||.++|+....+.+...... +..++..+-|+
T Consensus 45 ----~--------------------~~i~~~~dl~~ll~~~DvVid~t~p~~~~~~~~~al~~------G~~vvigttG~ 94 (257)
T PRK00048 45 ----A--------------------LGVAITDDLEAVLADADVLIDFTTPEATLENLEFALEH------GKPLVIGTTGF 94 (257)
T ss_pred ----C--------------------CCccccCCHHHhccCCCEEEECCCHHHHHHHHHHHHHc------CCCEEEECCCC
Confidence 0 02345678888787899999888888877777665542 44555556676
Q ss_pred ccc
Q 019978 201 EAE 203 (333)
Q Consensus 201 ~~~ 203 (333)
..+
T Consensus 95 s~~ 97 (257)
T PRK00048 95 TEE 97 (257)
T ss_pred CHH
Confidence 654
No 147
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.50 E-value=0.00035 Score=64.39 Aligned_cols=88 Identities=24% Similarity=0.274 Sum_probs=61.6
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
|+|.|+|+|.+|..+|..|++. | |+|++++++++.+++.. .+.. ...- +. ++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~-g-----~~Vv~Id~d~~~~~~~~--------~~~~----------~~~~-v~---gd 52 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE-G-----HNVVLIDRDEERVEEFL--------ADEL----------DTHV-VI---GD 52 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC-C-----CceEEEEcCHHHHHHHh--------hhhc----------ceEE-EE---ec
Confidence 7999999999999999999999 8 99999999998765311 1000 0000 00 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHH-hcCCCEEEEecCchhHHHHHHHHHhh
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISRY 183 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea-~~~aDlIIlaVps~~~~~vl~~i~~~ 183 (333)
-.-.+-++++ ++++|+++.++..+....++-.++..
T Consensus 53 ------------------------~t~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~ 89 (225)
T COG0569 53 ------------------------ATDEDVLEEAGIDDADAVVAATGNDEVNSVLALLALK 89 (225)
T ss_pred ------------------------CCCHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHH
Confidence 0001223343 67899999999999999999988854
No 148
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.49 E-value=0.0003 Score=69.86 Aligned_cols=92 Identities=17% Similarity=0.241 Sum_probs=64.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
-++|+|||.|++|..+|..+..- | .+|.+|++.....+ +
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~-G-----~~V~~~Dp~~~~~~-----------------------------~------ 154 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGL-G-----WKVLVCDPPRQEAE-----------------------------G------ 154 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEECCcccccc-----------------------------c------
Confidence 37999999999999999999876 8 89999987542100 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-----HHHHH-HHHHhhhhccCCCCEEEEe
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-----TKEVF-EEISRYWKERITVPVIISL 196 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~-----~~~vl-~~i~~~l~~~~~~~~Ivs~ 196 (333)
... ..++++.++.||+|++.+|-.. ..-++ ++.-..+++ ++++|++
T Consensus 155 ------------------------~~~-~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~---gailIN~ 206 (381)
T PRK00257 155 ------------------------DGD-FVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRP---GAWLINA 206 (381)
T ss_pred ------------------------Ccc-ccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCC---CeEEEEC
Confidence 011 1457888889999999999542 33343 223334565 7899998
Q ss_pred eecCccc
Q 019978 197 AKGVEAE 203 (333)
Q Consensus 197 ~kGi~~~ 203 (333)
+-|=..+
T Consensus 207 aRG~vVd 213 (381)
T PRK00257 207 SRGAVVD 213 (381)
T ss_pred CCCcccC
Confidence 8775544
No 149
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.49 E-value=0.00037 Score=72.04 Aligned_cols=95 Identities=23% Similarity=0.206 Sum_probs=68.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
-++|+|||.|.||..+|..+..- | ++|..|++.... +. ...
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~f-G-----~~V~~~d~~~~~-~~--------------------------~~~------ 180 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAF-G-----MKVIAYDPYISP-ER--------------------------AAQ------ 180 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCCCCh-hH--------------------------HHh------
Confidence 37999999999999999999877 7 899999986421 10 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
+ .+... ++++.+..||+|++++|.. .+..++ ++....+++ ++++|.++.|=
T Consensus 181 ---~--------------------g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~---ga~lIN~aRG~ 233 (526)
T PRK13581 181 ---L--------------------GVELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKP---GVRIINCARGG 233 (526)
T ss_pred ---c--------------------CCEEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCC---CeEEEECCCCc
Confidence 0 12233 6888899999999999975 566665 445555676 78899888775
Q ss_pred ccc
Q 019978 201 EAE 203 (333)
Q Consensus 201 ~~~ 203 (333)
..+
T Consensus 234 ~vd 236 (526)
T PRK13581 234 IID 236 (526)
T ss_pred eeC
Confidence 443
No 150
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.48 E-value=0.0014 Score=61.84 Aligned_cols=126 Identities=15% Similarity=0.146 Sum_probs=75.2
Q ss_pred CceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCc-chhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (333)
Q Consensus 43 ~~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~-~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (333)
+|||+|+| +|.||..++..+.+..+ .++. +++|... ...+ .+ . .+.+.
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~-----~elvav~d~~~~~~~~~----~~----~--------------~~~~~-- 51 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEG-----LQLVAAFERHGSSLQGT----DA----G--------------ELAGI-- 51 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCC-----CEEEEEEecCCccccCC----CH----H--------------HhcCc--
Confidence 47999999 59999999999986523 5544 5665432 1110 00 0 00000
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (333)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG 199 (333)
. ...+.+++|+++....+|+||.++|+....+.+...... +..+|+.+.|
T Consensus 52 -------~-----------------~~gv~~~~d~~~l~~~~DvVIdfT~p~~~~~~~~~al~~------g~~vVigttg 101 (266)
T TIGR00036 52 -------G-----------------KVGVPVTDDLEAVETDPDVLIDFTTPEGVLNHLKFALEH------GVRLVVGTTG 101 (266)
T ss_pred -------C-----------------cCCceeeCCHHHhcCCCCEEEECCChHHHHHHHHHHHHC------CCCEEEECCC
Confidence 0 013566788877645689999999998888877776542 4556655558
Q ss_pred CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchH
Q 019978 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS 238 (333)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ 238 (333)
+..+. .+.+.+... .....++.+||++.
T Consensus 102 ~~~e~---------~~~l~~aA~--~~g~~v~~a~NfSl 129 (266)
T TIGR00036 102 FSEED---------KQELADLAE--KAGIAAVIAPNFSI 129 (266)
T ss_pred CCHHH---------HHHHHHHHh--cCCccEEEECcccH
Confidence 76542 122333321 11245777888865
No 151
>PRK05442 malate dehydrogenase; Provisional
Probab=97.44 E-value=0.0015 Score=63.63 Aligned_cols=42 Identities=21% Similarity=0.393 Sum_probs=32.2
Q ss_pred CCCceEEEECC-CHHHHHHHHHHHHhcCCCC--CCeeEEEEecCCc
Q 019978 41 GDPLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGR 83 (333)
Q Consensus 41 ~~~~kI~IIGa-G~mG~alA~~La~~~G~~~--~~~~V~l~~r~~~ 83 (333)
.+++||+|||+ |.+|+.+|..|+.. +.+. .-.++.|+|++++
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~-~~~~~~~~~el~LiDi~~~ 46 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASG-DMLGKDQPVILQLLEIPPA 46 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhh-hhcCCCCccEEEEEecCCc
Confidence 46789999998 99999999998876 5331 0027999999653
No 152
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.43 E-value=0.00041 Score=68.80 Aligned_cols=92 Identities=23% Similarity=0.239 Sum_probs=64.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
-++|+|||.|++|+.+|..+..- | .+|..|++..... ..
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~-G-----~~V~~~dp~~~~~----------------------------~~------- 154 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEAL-G-----IKTLLCDPPRADR----------------------------GD------- 154 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCccccc----------------------------cc-------
Confidence 47999999999999999999876 8 8999998643100 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-----HHHHH-HHHHhhhhccCCCCEEEEe
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-----TKEVF-EEISRYWKERITVPVIISL 196 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~-----~~~vl-~~i~~~l~~~~~~~~Ivs~ 196 (333)
.. ...++++.+..||+|++.+|-.. ..-++ ++.-..+++ ++++|++
T Consensus 155 ------------------------~~-~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~---gailIN~ 206 (378)
T PRK15438 155 ------------------------EG-DFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKP---GAILINA 206 (378)
T ss_pred ------------------------cc-ccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCC---CcEEEEC
Confidence 00 12468888889999999998432 33333 233344565 7899999
Q ss_pred eecCccc
Q 019978 197 AKGVEAE 203 (333)
Q Consensus 197 ~kGi~~~ 203 (333)
+-|=..+
T Consensus 207 aRG~vVD 213 (378)
T PRK15438 207 CRGAVVD 213 (378)
T ss_pred CCchhcC
Confidence 8885544
No 153
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=97.42 E-value=0.0014 Score=58.82 Aligned_cols=85 Identities=19% Similarity=0.126 Sum_probs=50.5
Q ss_pred eEEEECCCHHHHHHHH--HHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 45 RIVGVGAGAWGSVFTA--MLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 45 kI~IIGaG~mG~alA~--~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
||+|||+|+.-+..-. .+... ..+.. .++.|+|+++++++.+. .+.+.+ .+..
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~-~~l~~-~ei~L~Did~~RL~~~~--~~~~~~----------------~~~~----- 55 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRT-EELSG-SEIVLMDIDEERLEIVE--RLARRM----------------VEEA----- 55 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCT-TTSTE-EEEEEE-SCHHHHHHHH--HHHHHH----------------HHHC-----
T ss_pred CEEEECCchHhhHHHHHHHHhcC-ccCCC-cEEEEEcCCHHHHHHHH--HHHHHH----------------HHhc-----
Confidence 8999999987665333 33333 33332 58999999998776432 111111 1100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHH
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETK 174 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~ 174 (333)
.. ...+..++|.++|+++||+||.++-....+
T Consensus 56 --~~------------------~~~v~~ttd~~eAl~gADfVi~~irvGg~~ 87 (183)
T PF02056_consen 56 --GA------------------DLKVEATTDRREALEGADFVINQIRVGGLE 87 (183)
T ss_dssp --TT------------------SSEEEEESSHHHHHTTESEEEE---TTHHH
T ss_pred --CC------------------CeEEEEeCCHHHHhCCCCEEEEEeeecchH
Confidence 00 025788999999999999999988764333
No 154
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.41 E-value=0.00096 Score=64.05 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=31.3
Q ss_pred EEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 46 I~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
|+|||+|.+|+++|..|+.. |.. .++.++|+++++++
T Consensus 1 i~iiGaG~VG~~~a~~l~~~-~~~---~el~l~D~~~~~~~ 37 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK-GLA---SELVLVDVNEEKAK 37 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCccHHH
Confidence 68999999999999999987 621 47999999987654
No 155
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.41 E-value=0.00049 Score=68.93 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=34.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (333)
|+|.|+|+|.+|..++..|.+. | ++|++++++++.+++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~-g-----~~v~vid~~~~~~~~ 38 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE-N-----NDVTVIDTDEERLRR 38 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECCHHHHHH
Confidence 6999999999999999999988 7 899999999876543
No 156
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.40 E-value=0.00052 Score=66.65 Aligned_cols=96 Identities=21% Similarity=0.243 Sum_probs=63.8
Q ss_pred CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
.+..+++|||+|.+|.+.+..+... - +..+|.+|+|++++++++.. .+.+ + +
T Consensus 126 ~~~~~lgiiG~G~qA~~~l~al~~~-~---~~~~v~V~~r~~~~~~~~~~-----~~~~-------------~--g---- 177 (325)
T TIGR02371 126 KDSSVLGIIGAGRQAWTQLEALSRV-F---DLEEVSVYCRTPSTREKFAL-----RASD-------------Y--E---- 177 (325)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhc-C---CCCEEEEECCCHHHHHHHHH-----HHHh-------------h--C----
Confidence 4568999999999999977776543 1 12689999999987653211 0000 0 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEe
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~ 196 (333)
..+.+.++.+++++++|+|+.|||+.. .++. ..++++ ++.|.++
T Consensus 178 -------------------------~~v~~~~~~~eav~~aDiVitaT~s~~--P~~~--~~~l~~---g~~v~~v 221 (325)
T TIGR02371 178 -------------------------VPVRAATDPREAVEGCDILVTTTPSRK--PVVK--ADWVSE---GTHINAI 221 (325)
T ss_pred -------------------------CcEEEeCCHHHHhccCCEEEEecCCCC--cEec--HHHcCC---CCEEEec
Confidence 035567899999999999999999853 2221 134455 6666544
No 157
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.39 E-value=0.00084 Score=65.14 Aligned_cols=96 Identities=19% Similarity=0.205 Sum_probs=63.7
Q ss_pred CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
.+..+++|||+|.+|...+..++...+ -.+|.+|+|++++++++. +.+... +.
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~----~~~v~v~~r~~~~a~~~~-----~~~~~~-------------~~----- 177 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRD----IERVRVYSRTFEKAYAFA-----QEIQSK-------------FN----- 177 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCC----ccEEEEECCCHHHHHHHH-----HHHHHh-------------cC-----
Confidence 356799999999999988877754313 157999999988765321 111100 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEe
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~ 196 (333)
..+...++.++++.++|+|+.|+|+.. .++. ..+++ ++.|+++
T Consensus 178 -------------------------~~~~~~~~~~~~~~~aDiVi~aT~s~~--p~i~---~~l~~---G~hV~~i 220 (325)
T PRK08618 178 -------------------------TEIYVVNSADEAIEEADIIVTVTNAKT--PVFS---EKLKK---GVHINAV 220 (325)
T ss_pred -------------------------CcEEEeCCHHHHHhcCCEEEEccCCCC--cchH---HhcCC---CcEEEec
Confidence 024456788889999999999999883 3333 34455 6766554
No 158
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.38 E-value=0.00063 Score=66.17 Aligned_cols=82 Identities=28% Similarity=0.365 Sum_probs=57.7
Q ss_pred CCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhh
Q 019978 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (333)
Q Consensus 39 ~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (333)
...+.++|+|||+|.+|.+.+..++...+ -.+|++|+|++++++++.. .+.+ .+ +
T Consensus 128 a~~~~~~v~IiGaG~~a~~~~~al~~~~~----~~~V~v~~R~~~~a~~l~~-----~~~~-------------~~-g-- 182 (330)
T PRK08291 128 AREDASRAAVIGAGEQARLQLEALTLVRP----IREVRVWARDAAKAEAYAA-----DLRA-------------EL-G-- 182 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhcCC----CCEEEEEcCCHHHHHHHHH-----HHhh-------------cc-C--
Confidence 34556899999999999998888875312 1579999999887654321 0100 00 0
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh
Q 019978 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE 172 (333)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~ 172 (333)
..+...+|+++++.++|+|+.|+|+..
T Consensus 183 ---------------------------~~v~~~~d~~~al~~aDiVi~aT~s~~ 209 (330)
T PRK08291 183 ---------------------------IPVTVARDVHEAVAGADIIVTTTPSEE 209 (330)
T ss_pred ---------------------------ceEEEeCCHHHHHccCCEEEEeeCCCC
Confidence 034556888899999999999999863
No 159
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.38 E-value=0.00059 Score=66.37 Aligned_cols=95 Identities=22% Similarity=0.225 Sum_probs=68.5
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC-cchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG-RSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~-~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
-++++|||+|.+|+.+|..+..- | .+|..|++.. ..... .
T Consensus 142 gkTvGIiG~G~IG~~va~~l~af-g-----m~v~~~d~~~~~~~~~--------------------------~------- 182 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAF-G-----MKVIGYDPYSPRERAG--------------------------V------- 182 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEECCCCchhhhc--------------------------c-------
Confidence 37999999999999999999876 7 8999999933 21100 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHH-HHhhhhccCCCCEEEEeeec
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE-ISRYWKERITVPVIISLAKG 199 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~~-i~~~l~~~~~~~~Ivs~~kG 199 (333)
.......++++.+..||+|.+.+|-. .++.++.. .-..+++ ++++|.++-|
T Consensus 183 ------------------------~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~---gailIN~aRG 235 (324)
T COG0111 183 ------------------------DGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKP---GAILINAARG 235 (324)
T ss_pred ------------------------ccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCC---CeEEEECCCc
Confidence 02334467889999999999999965 46655522 2234566 6789999888
Q ss_pred Cccc
Q 019978 200 VEAE 203 (333)
Q Consensus 200 i~~~ 203 (333)
-..+
T Consensus 236 ~vVd 239 (324)
T COG0111 236 GVVD 239 (324)
T ss_pred ceec
Confidence 5544
No 160
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.37 E-value=0.00073 Score=67.72 Aligned_cols=92 Identities=21% Similarity=0.300 Sum_probs=67.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
++|+|||.|++|..+|..+..- | .+|..|++.+... ..
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~f-G-----m~V~~~d~~~~~~----------------------------~~-------- 189 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESL-G-----MRVYFYDIEDKLP----------------------------LG-------- 189 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-C-----CEEEEECCCcccc----------------------------cC--------
Confidence 7999999999999999999766 7 8999999764210 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecCc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
.+....++++.+..||+|++.+|.. ....++ ++.-..+++ ++++|+++-|-.
T Consensus 190 -----------------------~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~---ga~lIN~aRG~~ 243 (409)
T PRK11790 190 -----------------------NARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKP---GAILINASRGTV 243 (409)
T ss_pred -----------------------CceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCC---CeEEEECCCCcc
Confidence 1223357889999999999999964 455555 233344566 789999887755
Q ss_pred cc
Q 019978 202 AE 203 (333)
Q Consensus 202 ~~ 203 (333)
.+
T Consensus 244 vd 245 (409)
T PRK11790 244 VD 245 (409)
T ss_pred cC
Confidence 44
No 161
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.35 E-value=0.00072 Score=64.88 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=32.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (333)
.+|+.|+|+|.+|..++..|... | .+|++++|+++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~-G-----a~V~v~~r~~~~ 187 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKAL-G-----ANVTVGARKSAH 187 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEECCHHH
Confidence 47999999999999999999887 8 899999999754
No 162
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.33 E-value=0.0016 Score=61.44 Aligned_cols=93 Identities=17% Similarity=0.198 Sum_probs=58.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEE-EecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRI-WRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l-~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
||||+|||+|+||..++..+.+. .. .++.. +.++. ..++. .+ .+.
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~-~~----~~l~~v~~~~~-~~~~~---------~~-------------~~~------ 46 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD-PD----LRVDWVIVPEH-SIDAV---------RR-------------ALG------ 46 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC-CC----ceEEEEEEcCC-CHHHH---------hh-------------hhc------
Confidence 58999999999999999999775 21 45443 33332 21110 00 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG 199 (333)
..+.+++|+++...+.|+|++|+|+....+...+... . ++.+++...|
T Consensus 47 ------------------------~~~~~~~d~~~l~~~~DvVve~t~~~~~~e~~~~aL~---a---Gk~Vvi~s~~ 94 (265)
T PRK13303 47 ------------------------EAVRVVSSVDALPQRPDLVVECAGHAALKEHVVPILK---A---GIDCAVISVG 94 (265)
T ss_pred ------------------------cCCeeeCCHHHhccCCCEEEECCCHHHHHHHHHHHHH---c---CCCEEEeChH
Confidence 0244567777653568999999999887776666543 3 4556655544
No 163
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.33 E-value=0.0026 Score=61.91 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=31.8
Q ss_pred CCceEEEECC-CHHHHHHHHHHHHhcCCCC--CCeeEEEEecCC
Q 019978 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG 82 (333)
Q Consensus 42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~--~~~~V~l~~r~~ 82 (333)
++.||+|||+ |.+|+++|..|+.. |.+. ...++.|+|+++
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~-~~~~~~~~~el~L~Di~~ 44 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASG-ELFGKDQPVVLHLLDIPP 44 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhC-CcccCCCccEEEEEecCC
Confidence 5789999998 99999999999887 6321 001799999965
No 164
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.32 E-value=0.0022 Score=62.30 Aligned_cols=40 Identities=20% Similarity=0.406 Sum_probs=31.2
Q ss_pred CceEEEECC-CHHHHHHHHHHHHhcCCCC--CCeeEEEEecCCc
Q 019978 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGR 83 (333)
Q Consensus 43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~--~~~~V~l~~r~~~ 83 (333)
++||+|||+ |.+|+++|..|+.. |.+. .-.++.|+|++++
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~-~~~~~~~~~el~L~Di~~~ 44 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASG-EMFGPDQPVILQLLELPQA 44 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc-cccCCCCceEEEEEecCCc
Confidence 579999999 99999999999887 6331 0017999999654
No 165
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.32 E-value=0.00087 Score=64.74 Aligned_cols=92 Identities=17% Similarity=0.281 Sum_probs=64.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
-++|+|||.|++|..+|..+..- | .+|..|+|.....+ .
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~f-g-----m~V~~~d~~~~~~~----------------------------~------- 183 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAF-G-----AKVVYYSTSGKNKN----------------------------E------- 183 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhc-C-----CEEEEECCCccccc----------------------------c-------
Confidence 37999999999999999998654 7 89999988542100 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHhhhhccCCCCEEEEeeecC
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~-~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
.+. ..++++.+..||+|++++|-. ..+.++. +.-..+++ ++++|+++-|=
T Consensus 184 ------------------------~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~---~a~lIN~aRG~ 235 (311)
T PRK08410 184 ------------------------EYE-RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKD---GAILINVGRGG 235 (311)
T ss_pred ------------------------Cce-eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCC---CeEEEECCCcc
Confidence 111 236888899999999999954 4544442 23334566 78999998875
Q ss_pred ccc
Q 019978 201 EAE 203 (333)
Q Consensus 201 ~~~ 203 (333)
..+
T Consensus 236 vVD 238 (311)
T PRK08410 236 IVN 238 (311)
T ss_pred ccC
Confidence 444
No 166
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.30 E-value=0.0028 Score=57.43 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=30.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRP 81 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~ 81 (333)
.||+|+|+|.||+.+|..|++. | . +++++|++
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~-G-----vg~i~lvD~D 54 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARA-G-----IGKLILVDFD 54 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHc-C-----CCEEEEECCC
Confidence 6999999999999999999999 8 5 79999998
No 167
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=97.28 E-value=0.001 Score=59.54 Aligned_cols=98 Identities=18% Similarity=0.333 Sum_probs=69.3
Q ss_pred chHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHH-HHHhcCCCCCCee-EEEEecCCcchhhhhhhhHHHHHhhhh
Q 019978 24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAM-LQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSRE 101 (333)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~-La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~ 101 (333)
+.+.-+++|..+.|-.+ +-++.|||+|++|.|++.+ +.++.| .+ |-++|.+++.+-.
T Consensus 67 nV~~L~~ff~~~Lg~~~--~tnviiVG~GnlG~All~Y~f~~~~~-----~~iv~~FDv~~~~VG~-------------- 125 (211)
T COG2344 67 NVKYLRDFFDDLLGQDK--TTNVIIVGVGNLGRALLNYNFSKKNG-----MKIVAAFDVDPDKVGT-------------- 125 (211)
T ss_pred cHHHHHHHHHHHhCCCc--ceeEEEEccChHHHHHhcCcchhhcC-----ceEEEEecCCHHHhCc--------------
Confidence 56667788888888443 4599999999999999988 554424 44 4578888764310
Q ss_pred hHHHHhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHH
Q 019978 102 DVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEE 179 (333)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~ 179 (333)
...+ + .++-.++++..++ +.|+.|+|||+..-+++++.
T Consensus 126 -----------~~~~---------v--------------------~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~vad~ 165 (211)
T COG2344 126 -----------KIGD---------V--------------------PVYDLDDLEKFVKKNDVEIAILTVPAEHAQEVADR 165 (211)
T ss_pred -----------ccCC---------e--------------------eeechHHHHHHHHhcCccEEEEEccHHHHHHHHHH
Confidence 1111 1 2444466776666 78999999999999999988
Q ss_pred HHh
Q 019978 180 ISR 182 (333)
Q Consensus 180 i~~ 182 (333)
+-.
T Consensus 166 Lv~ 168 (211)
T COG2344 166 LVK 168 (211)
T ss_pred HHH
Confidence 765
No 168
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.27 E-value=0.0028 Score=58.46 Aligned_cols=82 Identities=20% Similarity=0.390 Sum_probs=59.7
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
|+|+|||+|++|..+...+-+. .. +-.-|.+|+|+.+++.++. . .+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~--~~-~~e~v~v~D~~~ek~~~~~---------~-------------~~--------- 46 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDG--RV-DFELVAVYDRDEEKAKELE---------A-------------SV--------- 46 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcC--Cc-ceeEEEEecCCHHHHHHHH---------h-------------hc---------
Confidence 6899999999999999988643 21 1034789999998764311 0 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHh
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR 182 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~ 182 (333)
..+..+++.+.+.+.|+++.|-..+++++...++..
T Consensus 47 -----------------------~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~~~L~ 82 (255)
T COG1712 47 -----------------------GRRCVSDIDELIAEVDLVVEAASPEAVREYVPKILK 82 (255)
T ss_pred -----------------------CCCccccHHHHhhccceeeeeCCHHHHHHHhHHHHh
Confidence 112237788878999999999999999998888765
No 169
>PLN02928 oxidoreductase family protein
Probab=97.27 E-value=0.00081 Score=65.97 Aligned_cols=108 Identities=21% Similarity=0.169 Sum_probs=67.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
-++|+|||.|.+|..+|..+..- | .+|+.|+|+...... ..+ . . ........
T Consensus 159 gktvGIiG~G~IG~~vA~~l~af-G-----~~V~~~dr~~~~~~~---~~~----~-~---------~~~~~~~~----- 210 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPF-G-----VKLLATRRSWTSEPE---DGL----L-I---------PNGDVDDL----- 210 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhC-C-----CEEEEECCCCChhhh---hhh----c-c---------cccccccc-----
Confidence 37999999999999999999876 7 899999987431100 000 0 0 00000000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
. .......++++++..||+|++++|.. ..+.++ ++.-..+++ ++++|+++-|-
T Consensus 211 ---~-------------------~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~---ga~lINvaRG~ 265 (347)
T PLN02928 211 ---V-------------------DEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKK---GALLVNIARGG 265 (347)
T ss_pred ---c-------------------cccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCC---CeEEEECCCcc
Confidence 0 00012357889999999999999954 344444 223344566 78999988774
Q ss_pred ccc
Q 019978 201 EAE 203 (333)
Q Consensus 201 ~~~ 203 (333)
..+
T Consensus 266 lVd 268 (347)
T PLN02928 266 LLD 268 (347)
T ss_pred ccC
Confidence 443
No 170
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.27 E-value=0.00075 Score=67.02 Aligned_cols=88 Identities=23% Similarity=0.266 Sum_probs=61.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
||||.|||+|.+|++.|..|+.+ |. .+|++.+|+.++++++.... . + ..+-.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~-~d----~~V~iAdRs~~~~~~i~~~~-----~------------~-~v~~~----- 52 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN-GD----GEVTIADRSKEKCARIAELI-----G------------G-KVEAL----- 52 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC-CC----ceEEEEeCCHHHHHHHHhhc-----c------------c-cceeE-----
Confidence 58999999999999999999999 62 69999999988876543210 0 0 01100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHH
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEI 180 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i 180 (333)
.+ .+.-...+.+++.+.|+||-+.|+.....+++..
T Consensus 53 --~v--------------------D~~d~~al~~li~~~d~VIn~~p~~~~~~i~ka~ 88 (389)
T COG1748 53 --QV--------------------DAADVDALVALIKDFDLVINAAPPFVDLTILKAC 88 (389)
T ss_pred --Ee--------------------cccChHHHHHHHhcCCEEEEeCCchhhHHHHHHH
Confidence 00 1111234567788999999999998766666443
No 171
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=97.25 E-value=0.0024 Score=64.43 Aligned_cols=110 Identities=14% Similarity=0.147 Sum_probs=68.8
Q ss_pred ceEEEECCCHH-HHHHHHHHHHhcC-CCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 44 LRIVGVGAGAW-GSVFTAMLQDSYG-YLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 44 ~kI~IIGaG~m-G~alA~~La~~~G-~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
|||+|||+|+. .--+...|+.. . .+.. .+|.|+|.++++++.+. .+.+.+ ....
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~-~~~l~~-~ei~L~Did~~Rl~~v~--~l~~~~----------------~~~~---- 56 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKT-PEELPI-SEVTLYDIDEERLDIIL--TIAKRY----------------VEEV---- 56 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcC-hhhCCC-CEEEEEcCCHHHHHHHH--HHHHHH----------------HHhh----
Confidence 79999999983 22334444444 2 2333 68999999998765321 111111 1100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch------------------------------
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST------------------------------ 171 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~------------------------------ 171 (333)
.. ...+..|+|.++|+++||+||..+-..
T Consensus 57 ---g~------------------~~~v~~ttD~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~ 115 (425)
T cd05197 57 ---GA------------------DIKFEKTMDLEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFS 115 (425)
T ss_pred ---CC------------------CeEEEEeCCHHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhh
Confidence 00 015888999999999999999987541
Q ss_pred ------hHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978 172 ------ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (333)
Q Consensus 172 ------~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~ 202 (333)
.+.++++++.++.+ ++.++..+|-+..
T Consensus 116 alrni~ii~~i~~~i~~~~P----~a~lin~TNP~di 148 (425)
T cd05197 116 GLRQIPYVLDIARKXEKLSP----DAWYLNFTNPAGE 148 (425)
T ss_pred hhhhHHHHHHHHHHHHHhCC----CcEEEecCChHHH
Confidence 34455666666543 6788888887654
No 172
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.22 E-value=0.039 Score=54.93 Aligned_cols=238 Identities=14% Similarity=0.183 Sum_probs=136.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccc-hhhhhh
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLK-YVEARL 121 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~-~~~~~~ 121 (333)
|.+|.|+|+|..+--+|..+.+. + ++.|-+++|+..+.++ +.+.+.. +...+. .+.-.
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~-~----~~~vGi~~R~S~rSq~-----f~~aL~~----------~~~~~~v~vqn~- 59 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKH-G----NCRVGIVGRESVRSQR-----FFEALAR----------SDGLFEVSVQNE- 59 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhc-c----CceeeeecCcchhHHH-----HHHHHHh----------CCCEEEEeecch-
Confidence 35899999999999999999877 5 2579999997654432 3333322 111111 10000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
....+ .|= ..+ .+..|.++...+-|.+|+|||+++..+|+++|....-++ -+.||-++..+
T Consensus 60 ~h~~l-------~G~---------~~id~~~~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~--vk~iVLvSPtf 121 (429)
T PF10100_consen 60 QHQAL-------SGE---------CTIDHVFQDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKR--VKSIVLVSPTF 121 (429)
T ss_pred hhhhh-------cCe---------EEhhHhhcCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhh--CCEEEEECccc
Confidence 00000 000 011 134677777788999999999999999999998653332 34555566556
Q ss_pred cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCce----------eEEE-e--CChhhHHHHHHHhCCC
Q 019978 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYA----------NARI-C--GAEKWRKPLAKFLRRP 267 (333)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~----------~~~~-~--~~~~~~~~l~~ll~~~ 267 (333)
+.. ..+..++.+ .+.. ..+..++--=-+.....+.++ .+.+ + ++......++.+|...
T Consensus 122 GS~-------~lv~~~l~~-~~~~-~EVISFStY~gdTr~~d~~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~ 192 (429)
T PF10100_consen 122 GSH-------LLVKGFLND-LGPD-AEVISFSTYYGDTRWSDGEQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQL 192 (429)
T ss_pred chH-------HHHHHHHHh-cCCC-ceEEEeecccccceeccCCCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHc
Confidence 543 334444433 2211 122222111001111111110 1122 2 2346899999999999
Q ss_pred CeEEEecCChhHHHHHH--------HHHHHHHHHHHHHh-ccC-------CCCCcc--HHHHHHHHHHHHHHH-HHCCCC
Q 019978 268 HFTVWDNGDLVTHEVMG--------GLKNVYAIGAGMVA-ALT-------NESATS--KSVYFAHCTSEMVVM-HGMGRS 328 (333)
Q Consensus 268 ~~~v~~s~Di~gve~~~--------alkNv~Ai~~Gi~~-gl~-------~~~~n~--~~~l~~~~~~E~~~l-~~~G~~ 328 (333)
++.+...+....+|--. .+.|-.++.+=.-. +.. -.|.=. .-.=|...-+||..+ .++|+.
T Consensus 193 gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~ 272 (429)
T PF10100_consen 193 GIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVPKYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIE 272 (429)
T ss_pred CCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999998443 57777777543332 111 112222 225577788999999 899875
No 173
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.15 E-value=0.0045 Score=59.89 Aligned_cols=34 Identities=15% Similarity=0.335 Sum_probs=29.3
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (333)
|||+|||+ |.+|+++|..|+.. +.. .++.|+|++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~-~~~---~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN-PLV---SELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCC---cEEEEEecC
Confidence 79999999 99999999999877 521 379999998
No 174
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.15 E-value=0.0025 Score=63.87 Aligned_cols=56 Identities=20% Similarity=0.377 Sum_probs=47.8
Q ss_pred HHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978 26 EERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (333)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (333)
.+.+..+.+.++.....+++|.|+|+|.+|..++..|.+. | ++|++++++++.+++
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~-~-----~~v~vid~~~~~~~~ 269 (453)
T PRK09496 214 REHIRAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKE-G-----YSVKLIERDPERAEE 269 (453)
T ss_pred HHHHHHHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHH
Confidence 3457777888887777789999999999999999999988 7 899999999876553
No 175
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.14 E-value=0.0055 Score=59.16 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=31.9
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
||+|||+|.+|+++|..|+.+ +.. .++.|+|++++.++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~-~~~---~elvL~Di~~~~a~ 38 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL-GLF---SEIVLIDVNEGVAE 38 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCcchhh
Confidence 799999999999999999887 622 37999999887653
No 176
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.14 E-value=0.0019 Score=62.94 Aligned_cols=97 Identities=26% Similarity=0.274 Sum_probs=66.8
Q ss_pred CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
++...++|||+|..+..-...+..-.+ --+|.+|+|+++..++... . +.+
T Consensus 128 ~da~~laiIGaG~qA~~ql~a~~~v~~----~~~I~i~~r~~~~~e~~a~-----~-----------------l~~---- 177 (330)
T COG2423 128 KDASTLAIIGAGAQARTQLEALKAVRD----IREIRVYSRDPEAAEAFAA-----R-----------------LRK---- 177 (330)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhhCC----ccEEEEEcCCHHHHHHHHH-----H-----------------HHh----
Confidence 466799999999999999998876422 1579999999987654211 0 100
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEe
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~ 196 (333)
.++ ..+...++.++++++||+|+-|||+.. .+++. .++++ ++.|..+
T Consensus 178 ----~~~------------------~~v~a~~s~~~av~~aDiIvt~T~s~~--Pil~~--~~l~~---G~hI~ai 224 (330)
T COG2423 178 ----RGG------------------EAVGAADSAEEAVEGADIVVTATPSTE--PVLKA--EWLKP---GTHINAI 224 (330)
T ss_pred ----hcC------------------ccceeccCHHHHhhcCCEEEEecCCCC--CeecH--hhcCC---CcEEEec
Confidence 000 135677889999999999999999987 33321 34555 5665444
No 177
>PRK05086 malate dehydrogenase; Provisional
Probab=97.13 E-value=0.0036 Score=60.50 Aligned_cols=37 Identities=14% Similarity=0.300 Sum_probs=29.2
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
|||+|||| |.+|++++..+...++. .+++.++++++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~---~~el~L~d~~~~ 38 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPA---GSELSLYDIAPV 38 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCC---ccEEEEEecCCC
Confidence 79999999 99999999988552121 168999999853
No 178
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.13 E-value=0.0043 Score=61.81 Aligned_cols=44 Identities=14% Similarity=0.318 Sum_probs=32.1
Q ss_pred CCceEEEECC-CHHHHHHHHHHHHhcCCCCCC--eeEEEE--ecCCcchh
Q 019978 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDK--VLIRIW--RRPGRSVD 86 (333)
Q Consensus 42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~--~~V~l~--~r~~~~~~ 86 (333)
.+.||+|||+ |.+|+++|..|+.. |.+..+ ..+.|+ +++++.++
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~-~l~~~~~ei~L~L~diD~~~~~a~ 91 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASG-EVFGQDQPIALKLLGSERSKEALE 91 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhc-cccCCCCceEEEEeccCccchhhh
Confidence 4689999999 99999999999987 754311 234455 77776543
No 179
>PLN00106 malate dehydrogenase
Probab=97.12 E-value=0.0044 Score=60.27 Aligned_cols=48 Identities=15% Similarity=0.310 Sum_probs=35.8
Q ss_pred HHHHhhccCCCCCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 31 ELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 31 ~~~~~~~~~~~~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
|+|.-..+-...+.||+|+|+ |.+|+.+|..|+.+ +.. .++.++|+++
T Consensus 6 ~~~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~-~~~---~el~L~Di~~ 54 (323)
T PLN00106 6 SLRACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMN-PLV---SELHLYDIAN 54 (323)
T ss_pred hhhccccccCCCCCEEEEECCCCHHHHHHHHHHHhC-CCC---CEEEEEecCC
Confidence 344333333444579999999 99999999999976 521 4799999987
No 180
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.12 E-value=0.0018 Score=61.82 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=45.2
Q ss_pred cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (333)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (333)
+|-++-.|-.-.-=+.+++... .....++|.|+|+|..|.+++..|+.. |. .+|++++|+.++++.
T Consensus 101 ~g~l~G~NTD~~G~~~~l~~~~--~~~~~k~vlIlGaGGaaraia~aL~~~-G~----~~I~I~nR~~~ka~~ 166 (284)
T PRK12549 101 DGRRIGHNTDWSGFAESFRRGL--PDASLERVVQLGAGGAGAAVAHALLTL-GV----ERLTIFDVDPARAAA 166 (284)
T ss_pred CCEEEEEcCCHHHHHHHHHhhc--cCccCCEEEEECCcHHHHHHHHHHHHc-CC----CEEEEECCCHHHHHH
Confidence 4444445544444444554321 122347999999999999999999988 71 379999999876654
No 181
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.11 E-value=0.0036 Score=60.53 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=31.5
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (333)
+||+|||+|.+|+++|..|... +. ..++.|+|++++.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~-~~---~~el~LiDi~~~~~ 38 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ-GL---GSELVLIDINEEKA 38 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc-cc---cceEEEEEcccccc
Confidence 6999999999999999999766 41 14899999997654
No 182
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.11 E-value=0.0034 Score=61.44 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=32.3
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (333)
Q Consensus 157 a~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~ 203 (333)
...++|+|++|+|.....++...+.. . ++.||.++..+...
T Consensus 65 ~~~~vD~Vf~alP~~~~~~~v~~a~~---a---G~~VID~S~~fR~~ 105 (343)
T PRK00436 65 ILAGADVVFLALPHGVSMDLAPQLLE---A---GVKVIDLSADFRLK 105 (343)
T ss_pred HhcCCCEEEECCCcHHHHHHHHHHHh---C---CCEEEECCcccCCC
Confidence 45689999999999988888887754 2 67899988776653
No 183
>PLN00203 glutamyl-tRNA reductase
Probab=97.10 E-value=0.0011 Score=68.33 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=37.6
Q ss_pred HHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978 33 RRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (333)
Q Consensus 33 ~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (333)
++.++...-...+|+|||+|.||.+++..|... |. .+|++++|+.++++.
T Consensus 256 ~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~-G~----~~V~V~nRs~era~~ 305 (519)
T PLN00203 256 LMKLPESSHASARVLVIGAGKMGKLLVKHLVSK-GC----TKMVVVNRSEERVAA 305 (519)
T ss_pred HHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhC-CC----CeEEEEeCCHHHHHH
Confidence 344443222347999999999999999999988 71 379999999876543
No 184
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.10 E-value=0.0026 Score=61.89 Aligned_cols=94 Identities=22% Similarity=0.297 Sum_probs=65.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
++++|||.|.+|.++|..+.-- | .+|..|+|.+. -+. + .
T Consensus 147 ktvGIiG~GrIG~avA~r~~~F-g-----m~v~y~~~~~~-~~~-----------~---------------~-------- 185 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGF-G-----MKVLYYDRSPN-PEA-----------E---------------K-------- 185 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcC-C-----CEEEEECCCCC-hHH-----------H---------------h--------
Confidence 7999999999999999999844 6 89999999873 110 0 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHhhhhccCCCCEEEEeeecCc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~-~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
.+ .....+ +++.++.+|+|.+.+|.. ...-++. +.-..+++ +.++|.++-|=.
T Consensus 186 -~~--------------------~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~---ga~lVNtaRG~~ 240 (324)
T COG1052 186 -EL--------------------GARYVD-LDELLAESDIISLHCPLTPETRHLINAEELAKMKP---GAILVNTARGGL 240 (324)
T ss_pred -hc--------------------Cceecc-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCC---CeEEEECCCccc
Confidence 00 122223 788899999999999965 4555552 23334565 688898887754
Q ss_pred cc
Q 019978 202 AE 203 (333)
Q Consensus 202 ~~ 203 (333)
.+
T Consensus 241 VD 242 (324)
T COG1052 241 VD 242 (324)
T ss_pred cC
Confidence 43
No 185
>PLN02306 hydroxypyruvate reductase
Probab=97.09 E-value=0.0024 Score=63.61 Aligned_cols=112 Identities=15% Similarity=0.204 Sum_probs=68.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
-++|+|||.|.+|..+|..+...+| .+|..|++....... . ..... ...+...
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~fG-----m~V~~~d~~~~~~~~----~---~~~~~----------~~~l~~~----- 217 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGFK-----MNLIYYDLYQSTRLE----K---FVTAY----------GQFLKAN----- 217 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-----CEEEEECCCCchhhh----h---hhhhh----------ccccccc-----
Confidence 3799999999999999999864446 899999987531100 0 00000 0000000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHhhhhccCCCCEEEEeeecC
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~-~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
.. ....++...++++.+..||+|++++|-. .+..++. +.-..+++ ++++|.++-|=
T Consensus 218 --~~-----------------~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~---ga~lIN~aRG~ 275 (386)
T PLN02306 218 --GE-----------------QPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKK---EAVLVNASRGP 275 (386)
T ss_pred --cc-----------------ccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCC---CeEEEECCCcc
Confidence 00 0001223468999999999999999954 4555552 23344566 78999988774
Q ss_pred ccc
Q 019978 201 EAE 203 (333)
Q Consensus 201 ~~~ 203 (333)
..+
T Consensus 276 lVD 278 (386)
T PLN02306 276 VID 278 (386)
T ss_pred ccC
Confidence 443
No 186
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.08 E-value=0.0039 Score=60.35 Aligned_cols=34 Identities=21% Similarity=0.475 Sum_probs=29.3
Q ss_pred eEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 45 kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
||+|||+ |.+|+++|..|+.+ +.. .++.|+|+++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~-~~~---~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ-PYV---SELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC-CCC---cEEEEecCCC
Confidence 7999999 99999999999887 621 3799999987
No 187
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=97.08 E-value=0.0058 Score=61.83 Aligned_cols=52 Identities=21% Similarity=0.274 Sum_probs=39.0
Q ss_pred CeEEecCHHHHhcCCCEEEEecCch------------------------------------hHHHHHHHHHhhhhccCCC
Q 019978 147 PLKVVTNLQEAVWDADIVINGLPST------------------------------------ETKEVFEEISRYWKERITV 190 (333)
Q Consensus 147 ~i~~t~d~~ea~~~aDlIIlaVps~------------------------------------~~~~vl~~i~~~l~~~~~~ 190 (333)
.+..|+|.++|+++||+||..+-.. .+.++++++.++.+ +
T Consensus 61 ~v~~Ttdr~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~p----d 136 (437)
T cd05298 61 KFVYTTDPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSP----D 136 (437)
T ss_pred EEEEECCHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCC----C
Confidence 5889999999999999999987442 34555666666543 5
Q ss_pred CEEEEeeecCcc
Q 019978 191 PVIISLAKGVEA 202 (333)
Q Consensus 191 ~~Ivs~~kGi~~ 202 (333)
..++..+|....
T Consensus 137 a~lin~tNP~~~ 148 (437)
T cd05298 137 AWILNYSNPAAI 148 (437)
T ss_pred eEEEEecCcHHH
Confidence 788888887654
No 188
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.07 E-value=0.0023 Score=62.82 Aligned_cols=98 Identities=13% Similarity=0.099 Sum_probs=65.3
Q ss_pred CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
.+..+++|||+|..|..-...+..- - +-.+|++|+|++++++++.. .+.+ .+
T Consensus 127 ~da~~l~iiGaG~QA~~~l~a~~~v-r---~i~~V~v~~r~~~~a~~~~~-----~~~~---------------~~---- 178 (346)
T PRK07589 127 PDSRTMALIGNGAQSEFQALAFKAL-L---GIEEIRLYDIDPAATAKLAR-----NLAG---------------PG---- 178 (346)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHh-C---CceEEEEEeCCHHHHHHHHH-----HHHh---------------cC----
Confidence 4567999999999998887776654 1 11689999999987653211 0100 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEe
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~ 196 (333)
.++.+.++.++++++||+|+.|+++.....+++. .++++ ++.|..+
T Consensus 179 -------------------------~~v~~~~~~~~av~~ADIIvtaT~S~~~~Pvl~~--~~lkp---G~hV~aI 224 (346)
T PRK07589 179 -------------------------LRIVACRSVAEAVEGADIITTVTADKTNATILTD--DMVEP---GMHINAV 224 (346)
T ss_pred -------------------------CcEEEeCCHHHHHhcCCEEEEecCCCCCCceecH--HHcCC---CcEEEec
Confidence 1356678999999999999999987653333332 34565 6665443
No 189
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.07 E-value=0.0018 Score=62.37 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=29.2
Q ss_pred ceEEEECCC-HHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978 44 LRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (333)
Q Consensus 44 ~kI~IIGaG-~mG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (333)
++|+|||.| .||..+|..|.++ | +.|++|++.
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~-g-----atVtv~~~~ 192 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQA-H-----CSVTVVHSR 192 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHC-C-----CEEEEECCC
Confidence 799999996 9999999999999 8 899999654
No 190
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.07 E-value=0.0019 Score=62.52 Aligned_cols=90 Identities=20% Similarity=0.224 Sum_probs=63.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
-++|+|||.|.+|..+|..+..- | .+|..|++.... + .
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~f-g-----m~V~~~~~~~~~-~--------------------------~--------- 185 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAF-G-----MRVLIGQLPGRP-A--------------------------R--------- 185 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhC-C-----CEEEEECCCCCc-c--------------------------c---------
Confidence 37999999999999999998755 7 899989875310 0 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHhhhhccCCCCEEEEeeecC
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~-~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
.. ..++++.+..||+|++++|-. .++.++. +.-..+++ ++++|+++-|=
T Consensus 186 -------------------------~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~---ga~lIN~aRG~ 236 (317)
T PRK06487 186 -------------------------PD-RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKP---GALLINTARGG 236 (317)
T ss_pred -------------------------cc-ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCC---CeEEEECCCcc
Confidence 00 125788899999999999954 4555552 23334566 78999988875
Q ss_pred ccc
Q 019978 201 EAE 203 (333)
Q Consensus 201 ~~~ 203 (333)
..+
T Consensus 237 vVd 239 (317)
T PRK06487 237 LVD 239 (317)
T ss_pred ccC
Confidence 444
No 191
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.07 E-value=0.0012 Score=66.50 Aligned_cols=38 Identities=24% Similarity=0.417 Sum_probs=32.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchh
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVD 86 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~ 86 (333)
.++|+|+|+|.||..++..|... | . +|++++|++++++
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~-G-----~~~V~v~~r~~~ra~ 220 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEK-G-----VRKITVANRTLERAE 220 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHC-C-----CCeEEEEeCCHHHHH
Confidence 37999999999999999999887 7 5 7999999986543
No 192
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.06 E-value=0.0027 Score=61.76 Aligned_cols=96 Identities=20% Similarity=0.197 Sum_probs=65.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
-++++|||.|++|..+|..+...+| .+|..|++...... ...
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~fg-----m~V~~~~~~~~~~~---------------------------~~~------ 186 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGFN-----MPILYNARRHHKEA---------------------------EER------ 186 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcCC-----CEEEEECCCCchhh---------------------------HHh------
Confidence 3799999999999999999862336 78888887642100 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
..++. .++++.++.||+|++++|-. .++.++ ++.-..+++ ++++|+++-|=
T Consensus 187 -----------------------~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 239 (323)
T PRK15409 187 -----------------------FNARY-CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKS---SAIFINAGRGP 239 (323)
T ss_pred -----------------------cCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCC---CeEEEECCCcc
Confidence 01222 37888999999999999954 455555 223344566 78999998875
Q ss_pred ccc
Q 019978 201 EAE 203 (333)
Q Consensus 201 ~~~ 203 (333)
..+
T Consensus 240 vVd 242 (323)
T PRK15409 240 VVD 242 (323)
T ss_pred ccC
Confidence 443
No 193
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.06 E-value=0.0067 Score=59.01 Aligned_cols=40 Identities=20% Similarity=0.429 Sum_probs=31.9
Q ss_pred CceEEEECC-CHHHHHHHHHHHHhcCCCC--CCeeEEEEecCCc
Q 019978 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGR 83 (333)
Q Consensus 43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~--~~~~V~l~~r~~~ 83 (333)
+.||+|+|| |.+|+.++..|+.. +.+. .+.+|.++++++.
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~-~~~~~~~~~el~L~D~~~~ 44 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKG-DVFGPDQPVILHLLDIPPA 44 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-cccCCCCCcEEEEEEcCCc
Confidence 579999999 99999999999886 5331 1148999999763
No 194
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.05 E-value=0.0034 Score=56.82 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=33.7
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (333)
.-++|+|+|.|+||..+|..|.+. | ++|++++++++.+
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~-G-----~~Vvv~D~~~~~~ 64 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEE-G-----AKLIVADINEEAV 64 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEcCCHHHH
Confidence 337999999999999999999998 8 9999999987644
No 195
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.03 E-value=0.003 Score=61.71 Aligned_cols=156 Identities=13% Similarity=0.137 Sum_probs=98.4
Q ss_pred CCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhh
Q 019978 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (333)
Q Consensus 39 ~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (333)
+....+.|+.||.+.||..|+...+++ | +.|..|.|+..++++.- -++.+ + .
T Consensus 2 ~q~~~~digLiGLaVMGqnLiLN~~d~-G-----f~v~~yNRT~skvD~fl-------aneak--------~---~---- 53 (487)
T KOG2653|consen 2 SQTPKADIGLIGLAVMGQNLILNIADK-G-----FTVCAYNRTTSKVDEFL-------ANEAK--------G---T---- 53 (487)
T ss_pred CCccccchhhhhHhhhhhhhhhccccc-C-----ceEEEeccchHhHHHHH-------HHhhc--------C---C----
Confidence 344568999999999999999999999 8 99999999998876421 11110 0 0
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHH---hcCCCEEEEecCch-hHHHHHHHHHhhhhccCCCCEEE
Q 019978 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA---VWDADIVINGLPST-ETKEVFEEISRYWKERITVPVII 194 (333)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea---~~~aDlIIlaVps~-~~~~vl~~i~~~l~~~~~~~~Iv 194 (333)
.+....++++. ++....|++-|++. .++.+++++.+++.+ +.+||
T Consensus 54 ----------------------------~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~~I~~L~p~Lek---gDiII 102 (487)
T KOG2653|consen 54 ----------------------------KIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQFIEELVPYLEK---GDIII 102 (487)
T ss_pred ----------------------------cccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHHHHHHHHhhcCC---CCEEE
Confidence 12222444443 56789999999875 699999999999987 66777
Q ss_pred EeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhC
Q 019978 195 SLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLR 265 (333)
Q Consensus 195 s~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~ 265 (333)
.--|.-..++ ..+..+ +.+ .|. ..+=+|-+-.+|.++-.|+. +..++.+.-..++.+|.
T Consensus 103 DGGNs~y~dT-----~RR~~e-l~k-~Gi----lfvG~GVSGGEEGAR~GPSl-MpGg~~~Awp~ik~ifq 161 (487)
T KOG2653|consen 103 DGGNSEYQDT-----ERRCRE-LAK-KGI----LFVGSGVSGGEEGARYGPSL-MPGGSKEAWPHIKDIFQ 161 (487)
T ss_pred eCCcccCcch-----HHHHHH-HHh-cCc----EEEecCccCcccccccCCcc-CCCCChHHHHHHHHHHH
Confidence 6554433332 111111 111 221 22335555566666555553 45555555555555554
No 196
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.00 E-value=0.0056 Score=59.55 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=30.6
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCC--CCeeEEEEecCC
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~--~~~~V~l~~r~~ 82 (333)
.||+|+|| |.+|+.+|..|+.. |.+. ..+++.|+|+++
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~-~~~~~~~~~~l~L~Di~~ 41 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASG-ELFGDDQPVILHLLDIPP 41 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhC-CccCCCCceEEEEEecCC
Confidence 38999999 99999999999976 5432 113699999987
No 197
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.00 E-value=0.0023 Score=61.91 Aligned_cols=90 Identities=22% Similarity=0.233 Sum_probs=63.1
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
++|+|||.|.+|..+|..+..- | .+|..|++.... ..
T Consensus 148 ktvgIiG~G~IG~~va~~l~~f-g-----~~V~~~~~~~~~----------------------------~~--------- 184 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQAL-G-----MKVLYAEHKGAS----------------------------VC--------- 184 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcC-C-----CEEEEECCCccc----------------------------cc---------
Confidence 7999999999999999998654 7 789888764310 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecCc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
.. ...++++.+..||+|++++|-. ....++ ++.-..+++ ++++|+++-|-.
T Consensus 185 -----------------------~~-~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~---ga~lIN~aRG~~ 237 (314)
T PRK06932 185 -----------------------RE-GYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKP---TAFLINTGRGPL 237 (314)
T ss_pred -----------------------cc-ccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCC---CeEEEECCCccc
Confidence 00 0136788899999999999954 454444 223334566 789999988755
Q ss_pred cc
Q 019978 202 AE 203 (333)
Q Consensus 202 ~~ 203 (333)
.+
T Consensus 238 Vd 239 (314)
T PRK06932 238 VD 239 (314)
T ss_pred cC
Confidence 44
No 198
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.99 E-value=0.0057 Score=50.39 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=31.5
Q ss_pred cCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978 159 WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 159 ~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
.++|+||+|+|.....+++..+.+.+.+ ++++|.++.-+.
T Consensus 64 ~~~DvV~~~~~~~~~~~~~~~~~~~~~~---g~~viD~s~~~~ 103 (122)
T smart00859 64 LAVDIVFLALPHGVSKEIAPLLPKAAEA---GVKVIDLSSAFR 103 (122)
T ss_pred cCCCEEEEcCCcHHHHHHHHHHHhhhcC---CCEEEECCcccc
Confidence 4899999999999999988766665555 788888775444
No 199
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.97 E-value=0.0024 Score=61.52 Aligned_cols=80 Identities=16% Similarity=0.154 Sum_probs=58.3
Q ss_pred CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
.+..+++|||+|..|..-+..++.-. +-.+|.+|+|++++++++.. .+.+ .+ +
T Consensus 115 ~da~~l~iiGaG~QA~~~~~a~~~v~----~i~~v~v~~r~~~~a~~f~~-----~~~~-------------~~-~---- 167 (301)
T PRK06407 115 KNVENFTIIGSGFQAETQLEGMASVY----NPKRIRVYSRNFDHARAFAE-----RFSK-------------EF-G---- 167 (301)
T ss_pred cCCcEEEEECCcHHHHHHHHHHHhcC----CCCEEEEECCCHHHHHHHHH-----HHHH-------------hc-C----
Confidence 46789999999999999998887641 11589999999987654211 1110 00 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE 172 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~ 172 (333)
..+.+.+++++++.+||+|+-+|++..
T Consensus 168 -------------------------~~v~~~~~~~eav~~aDIV~taT~s~~ 194 (301)
T PRK06407 168 -------------------------VDIRPVDNAEAALRDADTITSITNSDT 194 (301)
T ss_pred -------------------------CcEEEeCCHHHHHhcCCEEEEecCCCC
Confidence 146667889999999999999999874
No 200
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.97 E-value=0.0029 Score=60.90 Aligned_cols=94 Identities=13% Similarity=0.119 Sum_probs=62.4
Q ss_pred CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
.+..+++|||+|.+|...+..++...+ -.+|.+|+|++++++++.. .+.. . +
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~----~~~v~v~~r~~~~a~~~a~-----~~~~--------------~-~---- 174 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLP----VRRVWVRGRTAASAAAFCA-----HARA--------------L-G---- 174 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCC----CCEEEEEcCCHHHHHHHHH-----HHHh--------------c-C----
Confidence 456799999999999999999875313 1579999999877653211 0000 0 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEe
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~ 196 (333)
..+. ..+.++++.++|+|+.|+|+.. .++.. .+++ ++.|..+
T Consensus 175 -------------------------~~~~-~~~~~~av~~aDiVitaT~s~~--Pl~~~---~~~~---g~hi~~i 216 (304)
T PRK07340 175 -------------------------PTAE-PLDGEAIPEAVDLVVTATTSRT--PVYPE---AARA---GRLVVAV 216 (304)
T ss_pred -------------------------CeeE-ECCHHHHhhcCCEEEEccCCCC--ceeCc---cCCC---CCEEEec
Confidence 0122 4678888999999999999874 33322 2455 6666544
No 201
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.96 E-value=0.0029 Score=61.43 Aligned_cols=80 Identities=23% Similarity=0.258 Sum_probs=56.6
Q ss_pred CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
.+..+++|||+|.+|.+.+..|+...+. .+|++|+|++++++++.. .+.+ .+ +
T Consensus 127 ~~~~~v~iiGaG~qA~~~~~al~~~~~i----~~v~V~~R~~~~a~~~a~-----~~~~-------------~~-g---- 179 (326)
T TIGR02992 127 EDSSVVAIFGAGMQARLQLEALTLVRDI----RSARIWARDSAKAEALAL-----QLSS-------------LL-G---- 179 (326)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHhCCc----cEEEEECCCHHHHHHHHH-----HHHh-------------hc-C----
Confidence 3567999999999999999998743131 479999999987654211 1100 00 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE 172 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~ 172 (333)
..+...+++++++.++|+|+.|||+..
T Consensus 180 -------------------------~~v~~~~~~~~av~~aDiVvtaT~s~~ 206 (326)
T TIGR02992 180 -------------------------IDVTAATDPRAAMSGADIIVTTTPSET 206 (326)
T ss_pred -------------------------ceEEEeCCHHHHhccCCEEEEecCCCC
Confidence 034556888899999999999999854
No 202
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=96.91 E-value=0.0088 Score=60.21 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.6
Q ss_pred CeEEecCHHHHhcCCCEEEEecC
Q 019978 147 PLKVVTNLQEAVWDADIVINGLP 169 (333)
Q Consensus 147 ~i~~t~d~~ea~~~aDlIIlaVp 169 (333)
.+..|+|.++|+++||+||.++-
T Consensus 62 ~v~~t~d~~~al~gadfVi~~~~ 84 (419)
T cd05296 62 KVHLTTDRREALEGADFVFTQIR 84 (419)
T ss_pred EEEEeCCHHHHhCCCCEEEEEEe
Confidence 57889999999999999999773
No 203
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.91 E-value=0.0044 Score=60.04 Aligned_cols=97 Identities=15% Similarity=0.226 Sum_probs=66.4
Q ss_pred CCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (333)
Q Consensus 40 ~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (333)
..+..+++|||+|..|..-+..+..- - +-.+|++|+|+++++++.. +.+.+ . +
T Consensus 125 ~~d~~~l~iiG~G~qA~~~~~a~~~v-~---~i~~v~v~~r~~~~a~~~~-----~~~~~--------------~-~--- 177 (315)
T PRK06823 125 PQHVSAIGIVGTGIQARMQLMYLKNV-T---DCRQLWVWGRSETALEEYR-----QYAQA--------------L-G--- 177 (315)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhc-C---CCCEEEEECCCHHHHHHHH-----HHHHh--------------c-C---
Confidence 45678999999999999998887654 1 1158999999998765421 11100 0 0
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEe
Q 019978 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (333)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~ 196 (333)
..+.+.++.++++++||+|+.||++.. .+++ ..++++ ++.|..+
T Consensus 178 --------------------------~~v~~~~~~~~av~~ADIV~taT~s~~--P~~~--~~~l~~---G~hi~~i 221 (315)
T PRK06823 178 --------------------------FAVNTTLDAAEVAHAANLIVTTTPSRE--PLLQ--AEDIQP---GTHITAV 221 (315)
T ss_pred --------------------------CcEEEECCHHHHhcCCCEEEEecCCCC--ceeC--HHHcCC---CcEEEec
Confidence 145667889999999999999999874 3332 134555 6666544
No 204
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.90 E-value=0.0072 Score=58.78 Aligned_cols=35 Identities=14% Similarity=0.334 Sum_probs=29.1
Q ss_pred CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (333)
Q Consensus 43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (333)
|.||+|+|+ |.+|+.+|..|+.. +.. .++.|+|++
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~-~~~---~elvL~Di~ 43 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQN-PHV---SELSLYDIV 43 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcC-CCC---CEEEEEecC
Confidence 469999999 99999999999865 421 589999993
No 205
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=96.88 E-value=0.012 Score=57.36 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=30.8
Q ss_pred eEEEECC-CHHHHHHHHHHHHhcCCCC--CCeeEEEEecCCc
Q 019978 45 RIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGR 83 (333)
Q Consensus 45 kI~IIGa-G~mG~alA~~La~~~G~~~--~~~~V~l~~r~~~ 83 (333)
||+|||+ |.+|+.+|..|+.. +.+. ..+++.|+|++++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-~~~~~~~e~el~LiD~~~~ 41 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-RMLGKDQPIILHLLDIPPA 41 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-cccCCCCccEEEEEecCCc
Confidence 6999999 99999999999987 6442 2247999999664
No 206
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.86 E-value=0.004 Score=60.56 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=27.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCC
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPG 82 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~ 82 (333)
++||+|+|+|+||...+..+.++.+ .++. +|++++
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd-----~ELVgV~dr~~ 38 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPD-----MELVGVFSRRG 38 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCC-----cEEEEEEcCCc
Confidence 4799999999999999998876522 5654 678875
No 207
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.84 E-value=0.0046 Score=56.30 Aligned_cols=99 Identities=21% Similarity=0.308 Sum_probs=63.1
Q ss_pred cchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHh-cCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhh
Q 019978 23 GSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDS-YGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSR 100 (333)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~-~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~ 100 (333)
-.+.+=+..++...++.. ..+|+|||+|.+|..++..+... .| +++. +++++++...+
T Consensus 66 y~v~~l~~~~~~~l~~~~--~~rV~IIGaG~iG~~l~~~~~~~~~g-----~~ivgv~D~d~~~~~~------------- 125 (213)
T PRK05472 66 YNVEELLEFIEKILGLDR--TWNVALVGAGNLGRALLNYNGFEKRG-----FKIVAAFDVDPEKIGT------------- 125 (213)
T ss_pred eeHHHHHHHHHHHhCCCC--CcEEEEECCCHHHHHHHHhhhcccCC-----cEEEEEEECChhhcCC-------------
Confidence 345556667777777663 46999999999999999864321 14 5544 67776643210
Q ss_pred hhHHHHhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHH
Q 019978 101 EDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFE 178 (333)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~ 178 (333)
...+. ++...+++.+.++ +.|.+++|+|.....++.+
T Consensus 126 ------------~i~g~-----------------------------~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~ 164 (213)
T PRK05472 126 ------------KIGGI-----------------------------PVYHIDELEEVVKENDIEIGILTVPAEAAQEVAD 164 (213)
T ss_pred ------------EeCCe-----------------------------EEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHH
Confidence 11110 1222345555554 4999999999998887777
Q ss_pred HHHh
Q 019978 179 EISR 182 (333)
Q Consensus 179 ~i~~ 182 (333)
.+..
T Consensus 165 ~l~~ 168 (213)
T PRK05472 165 RLVE 168 (213)
T ss_pred HHHH
Confidence 6653
No 208
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.84 E-value=0.016 Score=46.08 Aligned_cols=90 Identities=18% Similarity=0.229 Sum_probs=58.5
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCee-EEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
..||.|+|+|..|.+++..+-+..| +. +.+++.+++..-+ ...
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g-----~~i~~~~dv~~~~~G~-------------------------~i~------ 46 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRG-----FGIVAVFDVDPEKIGK-------------------------EIG------ 46 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHC-----ECEEEEEEECTTTTTS-------------------------EET------
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcC-----CCCEEEEEcCCCccCc-------------------------EEC------
Confidence 3589999999999999865544435 54 5678888864311 111
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~--aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~k 198 (333)
.+.+..++.++.+. .|+-+++||+...++++.++... + -+.|+.++.
T Consensus 47 -------------------------gipV~~~~~~l~~~~~i~iaii~VP~~~a~~~~~~~~~~---g--Ik~i~nft~ 95 (96)
T PF02629_consen 47 -------------------------GIPVYGSMDELEEFIEIDIAIITVPAEAAQEVADELVEA---G--IKGIVNFTP 95 (96)
T ss_dssp -------------------------TEEEESSHHHHHHHCTTSEEEEES-HHHHHHHHHHHHHT---T---SEEEEESS
T ss_pred -------------------------CEEeeccHHHhhhhhCCCEEEEEcCHHHHHHHHHHHHHc---C--CCEEEEeCC
Confidence 23344445444433 99999999999999998887652 1 245666654
No 209
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.84 E-value=0.0037 Score=60.39 Aligned_cols=98 Identities=24% Similarity=0.312 Sum_probs=56.5
Q ss_pred CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
.+..+++|||+|..|..-+..++.-.+ -.+|.+|+|++++++++.. .+. . + +
T Consensus 126 ~~~~~l~viGaG~QA~~~~~a~~~~~~----i~~v~v~~r~~~~~~~~~~-----~~~-------------~-~-~---- 177 (313)
T PF02423_consen 126 PDARTLGVIGAGVQARWHLRALAAVRP----IKEVRVYSRSPERAEAFAA-----RLR-------------D-L-G---- 177 (313)
T ss_dssp TT--EEEEE--SHHHHHHHHHHHHHS------SEEEEE-SSHHHHHHHHH-----HHH-------------C-C-C----
T ss_pred CCCceEEEECCCHHHHHHHHHHHHhCC----ceEEEEEccChhHHHHHHH-----hhc-------------c-c-c----
Confidence 355799999999999999998876522 1589999999876654211 000 0 0 1
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEe
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~ 196 (333)
..+...+|.++++.+||+|+.|+|+.....+++. .++++ ++.|.++
T Consensus 178 -------------------------~~v~~~~~~~~av~~aDii~taT~s~~~~P~~~~--~~l~~---g~hi~~i 223 (313)
T PF02423_consen 178 -------------------------VPVVAVDSAEEAVRGADIIVTATPSTTPAPVFDA--EWLKP---GTHINAI 223 (313)
T ss_dssp -------------------------TCEEEESSHHHHHTTSSEEEE----SSEEESB-G--GGS-T---T-EEEE-
T ss_pred -------------------------ccceeccchhhhcccCCEEEEccCCCCCCccccH--HHcCC---CcEEEEe
Confidence 1477788999999999999999998763122221 34555 6666554
No 210
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.84 E-value=0.0096 Score=56.32 Aligned_cols=80 Identities=20% Similarity=0.212 Sum_probs=55.1
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeE-EEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
+||+|||+|+||..++..+... + .. +.++ .+++|++++.++ +.+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~-~-~~-~~~l~~V~~~~~~~~~~--------------------------~~~------ 47 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLAD-A-AQ-PCQLAALTRNAADLPPA--------------------------LAG------ 47 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcC-C-CC-ceEEEEEecCCHHHHHH--------------------------hhc------
Confidence 6999999999999999998654 2 11 1443 356666543221 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHH-hcCCCEEEEecCchhHHHHHHHHHh
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISR 182 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea-~~~aDlIIlaVps~~~~~vl~~i~~ 182 (333)
.+.+.+|+++. .+.+|+|+.|-..+.+++....+..
T Consensus 48 ------------------------~~~~~~~l~~ll~~~~DlVVE~A~~~av~e~~~~iL~ 84 (267)
T PRK13301 48 ------------------------RVALLDGLPGLLAWRPDLVVEAAGQQAIAEHAEGCLT 84 (267)
T ss_pred ------------------------cCcccCCHHHHhhcCCCEEEECCCHHHHHHHHHHHHh
Confidence 12344677774 5789999999999999999988764
No 211
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.84 E-value=0.0075 Score=59.12 Aligned_cols=45 Identities=24% Similarity=0.286 Sum_probs=33.5
Q ss_pred CHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (333)
Q Consensus 153 d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~ 203 (333)
+.++...++|++|+|+|.....++..++.. . ++.||.++..+-..
T Consensus 61 ~~~~~~~~~DvVf~alP~~~s~~~~~~~~~---~---G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 61 DEEEIAEDADVVFLALPHGVSAELAPELLA---A---GVKVIDLSADFRLK 105 (346)
T ss_pred CHHHhhcCCCEEEECCCchHHHHHHHHHHh---C---CCEEEeCChhhhcC
Confidence 444555689999999999988888887654 2 57888887666543
No 212
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=96.83 E-value=0.013 Score=59.42 Aligned_cols=44 Identities=11% Similarity=0.142 Sum_probs=33.6
Q ss_pred CCceEEEECC-CHHHHHHHHHHHHhcCCCCCC--e--eEEEEecCCcchh
Q 019978 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDK--V--LIRIWRRPGRSVD 86 (333)
Q Consensus 42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~--~--~V~l~~r~~~~~~ 86 (333)
.+-||+|||+ |.+|+++|..|+.. +.|..+ . ++.+++++++.++
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~-~v~g~~~~i~~eLvliD~~~~~a~ 147 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASG-EVFGPDQPIALKLLGSERSKQALE 147 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhc-ccccCCCCcccEEEEEcCCcchhH
Confidence 3579999999 99999999999875 333211 2 6888999988654
No 213
>PRK06046 alanine dehydrogenase; Validated
Probab=96.80 E-value=0.0048 Score=59.91 Aligned_cols=96 Identities=23% Similarity=0.365 Sum_probs=62.4
Q ss_pred CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
.+..+|+|||+|.+|...+..++...+ + ..|.+|+|++++.++... .+.+
T Consensus 127 ~~~~~vgiiG~G~qa~~h~~al~~~~~-i---~~v~v~~r~~~~~~~~~~-----~~~~--------------------- 176 (326)
T PRK06046 127 KDSKVVGIIGAGNQARTQLLALSEVFD-L---EEVRVYDRTKSSAEKFVE-----RMSS--------------------- 176 (326)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCC-c---eEEEEECCCHHHHHHHHH-----HHHh---------------------
Confidence 456799999999999999998875412 1 579999999876543211 0000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEe
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~ 196 (333)
.++ ..+.+.++.+++++ +|+|+.|+|+.. .+++ ..++++ ++.|.++
T Consensus 177 ----~~~------------------~~v~~~~~~~~~l~-aDiVv~aTps~~--P~~~--~~~l~~---g~hV~~i 222 (326)
T PRK06046 177 ----VVG------------------CDVTVAEDIEEACD-CDILVTTTPSRK--PVVK--AEWIKE---GTHINAI 222 (326)
T ss_pred ----hcC------------------ceEEEeCCHHHHhh-CCEEEEecCCCC--cEec--HHHcCC---CCEEEec
Confidence 000 03455678888887 999999999863 3322 123455 6665544
No 214
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.76 E-value=0.0034 Score=56.01 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=33.1
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
+++.|+|+ |.+|..++..|++. | ++|++++|+.++++
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~-g-----~~V~l~~R~~~~~~ 66 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLARE-G-----ARVVLVGRDLERAQ 66 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHH
Confidence 79999996 99999999999998 7 89999999976554
No 215
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.75 E-value=0.015 Score=52.53 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=30.5
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.||.|+|+|.+|+.++..|+.. |. .+++++|.+.
T Consensus 22 ~~VlviG~GglGs~ia~~La~~-Gv----~~i~lvD~d~ 55 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGA-GV----GTIVIVDDDH 55 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHc-CC----CeEEEecCCE
Confidence 6999999999999999999999 82 3799999885
No 216
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.75 E-value=0.0073 Score=56.91 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=33.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
.+++.|+|+|.+|.+++..|++. | .+|++++|++++++
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~-g-----~~v~v~~R~~~~~~ 154 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKA-D-----CNVIIANRTVSKAE 154 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 46899999999999999999998 8 89999999986654
No 217
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.74 E-value=0.021 Score=50.54 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=29.4
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
||.|+|+|.+|+.++..|++. |. .+++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~-Gv----g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-GV----GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 689999999999999999999 82 3699999986
No 218
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.73 E-value=0.0027 Score=63.83 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=33.1
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
+||.|||+|-||.+++..|+.. |. .++++++|+.++++
T Consensus 182 kkvlviGaG~~a~~va~~L~~~-g~----~~I~V~nRt~~ra~ 219 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTAL-AP----KQIMLANRTIEKAQ 219 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHc-CC----CEEEEECCCHHHHH
Confidence 6899999999999999999988 72 47999999987654
No 219
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.72 E-value=0.0068 Score=49.06 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=31.5
Q ss_pred EEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhh
Q 019978 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (333)
Q Consensus 46 I~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (333)
|.|+|.|.+|..++..|.+. + .+|++++++++.++++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~-----~~vvvid~d~~~~~~~ 37 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-G-----IDVVVIDRDPERVEEL 37 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-T-----SEEEEEESSHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhC-C-----CEEEEEECCcHHHHHH
Confidence 68999999999999999997 5 7999999999876543
No 220
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.69 E-value=0.003 Score=63.47 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=32.7
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
.+|+|+|+|.||..++..|... |. .+|++|+|+.++++
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~-G~----~~V~v~~rs~~ra~ 218 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRK-GV----GKILIANRTYERAE 218 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHC-CC----CEEEEEeCCHHHHH
Confidence 6999999999999999999887 62 57999999986543
No 221
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.66 E-value=0.012 Score=51.83 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=27.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
+++.|+|.|..|..+|..|... | ..|++++++|-
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~-G-----a~V~V~e~DPi 57 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGL-G-----ARVTVTEIDPI 57 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHT-T------EEEEE-SSHH
T ss_pred CEEEEeCCCcccHHHHHHHhhC-C-----CEEEEEECChH
Confidence 6899999999999999999888 8 89999999984
No 222
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.62 E-value=0.014 Score=64.76 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=32.1
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCC---------CCeeEEEEecCCcchh
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLR---------DKVLIRIWRRPGRSVD 86 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~---------~~~~V~l~~r~~~~~~ 86 (333)
.++||+|||||.||...+..|++. ..++ +...|.+.+++.+.++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~ 620 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAK 620 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHH
Confidence 367999999999999999999886 3111 0013888888876544
No 223
>PRK11579 putative oxidoreductase; Provisional
Probab=96.62 E-value=0.015 Score=56.63 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=25.3
Q ss_pred EEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHh
Q 019978 149 KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISR 182 (333)
Q Consensus 149 ~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~ 182 (333)
.+.+|+++.+. +.|+|++|+|+....+++.+...
T Consensus 51 ~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~~al~ 86 (346)
T PRK11579 51 TVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAKAALE 86 (346)
T ss_pred ceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHH
Confidence 34578888775 57999999999877776666543
No 224
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.59 E-value=0.0067 Score=58.34 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=28.2
Q ss_pred ceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 019978 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWR 79 (333)
Q Consensus 44 ~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~ 79 (333)
++|+||| .|.||..||..|.+. | +.|++|.
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~-g-----~tVtv~~ 189 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAA-N-----ATVTIAH 189 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhC-C-----CEEEEEC
Confidence 7999999 999999999999998 8 8999994
No 225
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=96.56 E-value=0.0086 Score=58.41 Aligned_cols=95 Identities=20% Similarity=0.340 Sum_probs=64.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (333)
++|+|+|+|++|..+|+.|..- | ..+..+.|++..-+.. . .+..
T Consensus 163 K~vgilG~G~IG~~ia~rL~~F-g-----~~i~y~~r~~~~~~~~----------~------------~~~~-------- 206 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPF-G-----CVILYHSRTQLPPEEA----------Y------------EYYA-------- 206 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhc-c-----ceeeeecccCCchhhH----------H------------Hhcc--------
Confidence 6999999999999999999775 5 4555556655322110 0 0100
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHhhhhccCCCCEEEEeeecCc
Q 019978 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~-~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
. ..|.++.+..+|+|+++.|-. .+..++. ++-..+++ +.+||+++-|=.
T Consensus 207 -------------------------~-~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~---g~vlVN~aRG~i 257 (336)
T KOG0069|consen 207 -------------------------E-FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKD---GAVLVNTARGAI 257 (336)
T ss_pred -------------------------c-ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCC---CeEEEecccccc
Confidence 0 245667788999999999965 5777764 34555676 678899888855
Q ss_pred cc
Q 019978 202 AE 203 (333)
Q Consensus 202 ~~ 203 (333)
.+
T Consensus 258 id 259 (336)
T KOG0069|consen 258 ID 259 (336)
T ss_pred cc
Confidence 54
No 226
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.55 E-value=0.061 Score=45.11 Aligned_cols=34 Identities=29% Similarity=0.282 Sum_probs=29.7
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.||+|+|+|.+|+.++..|+.. |. -+++++|.+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~-Gv----~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS-GV----GKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH-TT----SEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHh-CC----CceeecCCcc
Confidence 6999999999999999999999 82 3799999875
No 227
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.53 E-value=0.011 Score=56.65 Aligned_cols=98 Identities=18% Similarity=0.152 Sum_probs=61.3
Q ss_pred CCceEEEECCCHHH-HHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 42 DPLRIVGVGAGAWG-SVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 42 ~~~kI~IIGaG~mG-~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
.++||+|||+|.++ ...+..+... +.. - .-|-+++++++++++... +
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~-~~~-~-~~vav~d~~~~~a~~~a~--------~--------------------- 49 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAAL-GGG-L-ELVAVVDRDPERAEAFAE--------E--------------------- 49 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhC-CCc-e-EEEEEecCCHHHHHHHHH--------H---------------------
Confidence 35899999999555 5677777765 410 0 236678888876543110 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhcC--CCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEee
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~d~~ea~~~--aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~ 197 (333)
+ .+ ...+|+++.+.+ .|+|++|+|+....++..... .. ++.| -+-
T Consensus 50 -----~--------------------~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL---~a---GkhV-l~E 97 (342)
T COG0673 50 -----F--------------------GIAKAYTDLEELLADPDIDAVYIATPNALHAELALAAL---EA---GKHV-LCE 97 (342)
T ss_pred -----c--------------------CCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHH---hc---CCEE-EEc
Confidence 0 11 356788887765 599999999987777764433 32 4444 356
Q ss_pred ecCccc
Q 019978 198 KGVEAE 203 (333)
Q Consensus 198 kGi~~~ 203 (333)
|-+...
T Consensus 98 KPla~t 103 (342)
T COG0673 98 KPLALT 103 (342)
T ss_pred CCCCCC
Confidence 666543
No 228
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.50 E-value=0.0081 Score=52.18 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=31.8
Q ss_pred EEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 46 IVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 46 I~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
|.|+|+ |.+|..++..|.++ | ++|++..|++++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~-~-----~~V~~~~R~~~~~~ 36 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR-G-----HEVTALVRSPSKAE 36 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-T-----SEEEEEESSGGGHH
T ss_pred eEEECCCChHHHHHHHHHHHC-C-----CEEEEEecCchhcc
Confidence 789997 99999999999999 8 99999999987643
No 229
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.49 E-value=0.0095 Score=59.23 Aligned_cols=82 Identities=21% Similarity=0.212 Sum_probs=57.3
Q ss_pred CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
.+..+++|||+|..|..-...++.- - .+-.+|++|+|+++++++.. +.+.+ .+++.
T Consensus 153 ~da~~l~iiG~G~QA~~~l~a~~~v-~--~~i~~V~v~~r~~~~a~~f~-----~~~~~-------------~~~~~--- 208 (379)
T PRK06199 153 KDSKVVGLLGPGVMGKTILAAFMAV-C--PGIDTIKIKGRGQKSLDSFA-----TWVAE-------------TYPQI--- 208 (379)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHh-c--CCccEEEEECCCHHHHHHHH-----HHHHH-------------hcCCC---
Confidence 4668999999999999999888763 1 00158999999998765421 11110 01100
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~ 171 (333)
..+.+.++.++++.+||+|+.|+++.
T Consensus 209 -------------------------~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 209 -------------------------TNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred -------------------------ceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 03667789999999999999999763
No 230
>PLN02494 adenosylhomocysteinase
Probab=96.47 E-value=0.015 Score=59.15 Aligned_cols=49 Identities=18% Similarity=0.060 Sum_probs=36.7
Q ss_pred hhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 29 ~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (333)
+|.+-|..+.. ..-++|+|+|+|.+|..+|..+... | .+|+++++++.+
T Consensus 241 ~d~i~r~t~i~-LaGKtVvViGyG~IGr~vA~~aka~-G-----a~VIV~e~dp~r 289 (477)
T PLN02494 241 PDGLMRATDVM-IAGKVAVICGYGDVGKGCAAAMKAA-G-----ARVIVTEIDPIC 289 (477)
T ss_pred HHHHHHhcCCc-cCCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCchh
Confidence 44444444431 1236999999999999999999776 7 899999998754
No 231
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.47 E-value=0.014 Score=58.83 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=31.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (333)
++|+|+|+|.+|..+|..+... | .+|+++++++.+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~-G-----a~ViV~d~dp~r 247 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGL-G-----ARVIVTEVDPIC 247 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcCCchh
Confidence 6999999999999999999887 8 899999998854
No 232
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.46 E-value=0.0089 Score=56.91 Aligned_cols=68 Identities=19% Similarity=0.163 Sum_probs=45.4
Q ss_pred cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (333)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (333)
+|-++-.|-.-.==+..+++.........+++.|||+|-+|.+++..|++. |. .+|++++|+.+++++
T Consensus 97 ~g~l~G~NTD~~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~~-G~----~~i~I~nRt~~ka~~ 164 (282)
T TIGR01809 97 NGIWKGDNTDWDGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALASL-GV----TDITVINRNPDKLSR 164 (282)
T ss_pred CCcEEEecCCHHHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHHc-CC----CeEEEEeCCHHHHHH
Confidence 444444455444444555542211112236899999999999999999988 72 479999999876654
No 233
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.45 E-value=0.053 Score=45.82 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=29.0
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
||.|+|+|.+|+.++..|+.. |. .+++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-Gv----~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-GV----GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CC----CEEEEEcCCC
Confidence 689999999999999999999 82 3799998874
No 234
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.45 E-value=0.012 Score=55.84 Aligned_cols=67 Identities=22% Similarity=0.199 Sum_probs=44.5
Q ss_pred cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (333)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (333)
+|-++-.|-.-.-=+..+++..+. ....+++.|+|+|.+|.+++..|+.. |. .+|++++|+.+++++
T Consensus 96 ~g~l~G~NTD~~G~~~~l~~~~~~-~~~~k~vlVlGaGg~a~ai~~aL~~~-g~----~~V~v~~R~~~~a~~ 162 (278)
T PRK00258 96 DGRLIGDNTDGIGFVRALEERLGV-DLKGKRILILGAGGAARAVILPLLDL-GV----AEITIVNRTVERAEE 162 (278)
T ss_pred CCEEEEEcccHHHHHHHHHhccCC-CCCCCEEEEEcCcHHHHHHHHHHHHc-CC----CEEEEEeCCHHHHHH
Confidence 344444454444444444432222 12236899999999999999999987 62 589999999876543
No 235
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.45 E-value=0.019 Score=56.20 Aligned_cols=33 Identities=30% Similarity=0.383 Sum_probs=30.6
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~ 82 (333)
.||.|||+|.+|+.+|..|+.. | + +++++|++.
T Consensus 25 ~~VlIiG~GglGs~va~~La~a-G-----vg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRA-G-----IGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-C-----CCEEEEEcCCc
Confidence 6899999999999999999999 8 5 799999986
No 236
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.44 E-value=0.014 Score=57.70 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=33.9
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
...+|.|+|+|.+|...+..+... | .+|++++|++++++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-G-----a~V~v~d~~~~~~~ 204 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-G-----ATVTILDINIDRLR 204 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-C-----CeEEEEECCHHHHH
Confidence 457899999999999999999887 8 78999999876543
No 237
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.44 E-value=0.023 Score=46.94 Aligned_cols=74 Identities=20% Similarity=0.268 Sum_probs=52.0
Q ss_pred ceEEEEC----CCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978 44 LRIVGVG----AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (333)
Q Consensus 44 ~kI~IIG----aG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (333)
++|+||| .+.+|..+...|.+. | ++|+.++...+.++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~-G-----~~v~~Vnp~~~~i~--------------------------------- 41 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA-G-----YEVYPVNPKGGEIL--------------------------------- 41 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT-T------EEEEESTTCSEET---------------------------------
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC-C-----CEEEEECCCceEEC---------------------------------
Confidence 4799999 699999999999998 8 88877755543221
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhh
Q 019978 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY 183 (333)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~ 183 (333)
.+.+..+++|.-+..|++++++|+..+.++++++...
T Consensus 42 ---------------------------G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~ 78 (116)
T PF13380_consen 42 ---------------------------GIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAAL 78 (116)
T ss_dssp ---------------------------TEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHH
T ss_pred ---------------------------cEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHc
Confidence 2334455555236889999999999999999999864
No 238
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.43 E-value=0.028 Score=56.68 Aligned_cols=83 Identities=16% Similarity=0.176 Sum_probs=53.2
Q ss_pred CceEEEECCCHHHHHHHHH--HHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 43 PLRIVGVGAGAWGSVFTAM--LQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~--La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
.+||+|||+|+.++..-.. +.+. -.+.. .++.|+|.++++.+.+. .+.+ + +...
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~-e~l~~-~el~L~Did~~r~~~i~------~~~~------~------~v~~---- 58 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLART-EELPV-RELALYDIDEERLKIIA------ILAK------K------LVEE---- 58 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcC-ccCCc-ceEEEEeCCHHHHHHHH------HHHH------H------HHHh----
Confidence 4799999999987764332 3333 33433 68999999998655221 1111 0 1111
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS 170 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps 170 (333)
.. . ...+..++|.++|+++||+|+.++-.
T Consensus 59 -----~g--------~--------~~kv~~ttd~~eAl~gAdfVi~~~rv 87 (442)
T COG1486 59 -----AG--------A--------PVKVEATTDRREALEGADFVITQIRV 87 (442)
T ss_pred -----hC--------C--------CeEEEEecCHHHHhcCCCEEEEEEee
Confidence 00 0 02578899999999999999998755
No 239
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.42 E-value=0.03 Score=56.26 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=32.1
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (333)
.+|+|+|+|.+|..++..+... | .+|+++++++.++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~-G-----a~ViV~d~d~~R~ 238 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQ-G-----ARVIVTEVDPICA 238 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEECChhhH
Confidence 6999999999999999999887 8 7899999988654
No 240
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.42 E-value=0.0083 Score=62.31 Aligned_cols=39 Identities=23% Similarity=0.298 Sum_probs=35.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhh
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (333)
-+|.|+|+|.+|..++..|.++ | ++|+++|.|+++++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~-g-----~~vvvId~d~~~~~~~ 456 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA-G-----IPLVVIETSRTRVDEL 456 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC-C-----CCEEEEECCHHHHHHH
Confidence 5899999999999999999998 7 9999999999876543
No 241
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.41 E-value=0.022 Score=57.13 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=31.7
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (333)
++|+|+|+|.+|..+|..+... | .+|++|++++.+
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~-G-----a~ViV~d~dp~r 230 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGM-G-----ARVIVTEVDPIR 230 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhC-c-----CEEEEEeCChhh
Confidence 6999999999999999999877 7 899999998854
No 242
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.41 E-value=0.013 Score=58.29 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=30.8
Q ss_pred CCCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 41 GDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 41 ~~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
..+|||+|+|| |..|..+...|..+ . .++|+++.++..
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~h-P----~~el~~l~s~~s 74 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANH-P----DFEITVMTADRK 74 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhC-C----CCeEEEEEChhh
Confidence 35679999998 99999999999877 2 268888877643
No 243
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.41 E-value=0.0084 Score=60.06 Aligned_cols=39 Identities=23% Similarity=0.378 Sum_probs=34.7
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (333)
.|+.|||||-||...|.+|+.. |. .+|++.+|+.+++.+
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~-g~----~~i~IaNRT~erA~~ 217 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEK-GV----KKITIANRTLERAEE 217 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhC-CC----CEEEEEcCCHHHHHH
Confidence 5899999999999999999998 73 689999999987754
No 244
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=96.40 E-value=0.023 Score=54.69 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=28.9
Q ss_pred EECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 48 GVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 48 IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
|||+|.+|+++|..|+.. +.. .++.|+|++++.++
T Consensus 1 iIGaG~VG~~~a~~l~~~-~l~---~el~L~Di~~~~~~ 35 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ-GIA---DEIVLIDINKDKAE 35 (299)
T ss_pred CCCcCHHHHHHHHHHHhc-CCC---CEEEEEeCCCChhh
Confidence 799999999999999887 632 37999999887654
No 245
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.37 E-value=0.01 Score=60.46 Aligned_cols=35 Identities=17% Similarity=0.123 Sum_probs=31.6
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (333)
++|+|+|.|.+|..+|..+... | .+|+++++++..
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~-G-----a~ViV~e~dp~~ 289 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGF-G-----ARVVVTEIDPIC 289 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCchh
Confidence 6999999999999999999877 7 899999998753
No 246
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.36 E-value=0.017 Score=56.25 Aligned_cols=96 Identities=18% Similarity=0.159 Sum_probs=60.0
Q ss_pred CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
+|||+|+|| |..|..+...|++. ++ +..++....++.+.-+.+ .+.+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~-~h--p~~~l~~l~s~~~~g~~l------------------------~~~g----- 48 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEER-NF--PVDKLRLLASARSAGKEL------------------------SFKG----- 48 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC-CC--CcceEEEEEccccCCCee------------------------eeCC-----
Confidence 479999997 99999999999987 51 002456666654321110 0100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
..+.+.+.....+.++|+||+|+|.....++..++.. . +..||.++..+
T Consensus 49 ------------------------~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~~~~~~~---~---G~~VIDlS~~~ 97 (334)
T PRK14874 49 ------------------------KELKVEDLTTFDFSGVDIALFSAGGSVSKKYAPKAAA---A---GAVVIDNSSAF 97 (334)
T ss_pred ------------------------ceeEEeeCCHHHHcCCCEEEECCChHHHHHHHHHHHh---C---CCEEEECCchh
Confidence 0122221111235789999999999988888877643 2 56788766543
No 247
>PRK04148 hypothetical protein; Provisional
Probab=96.29 E-value=0.018 Score=49.07 Aligned_cols=87 Identities=20% Similarity=0.230 Sum_probs=62.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (333)
.+||.+||+| .|..+|..|++. | ++|+..|.+++.++.++.. ...... .
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~-G-----~~ViaIDi~~~aV~~a~~~---------------------~~~~v~---d 65 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKES-G-----FDVIVIDINEKAVEKAKKL---------------------GLNAFV---D 65 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHHh---------------------CCeEEE---C
Confidence 3799999999 999999999998 8 9999999999765432210 011000 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhc
Q 019978 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKE 186 (333)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~ 186 (333)
.+ +..++ +.-+++|+|.-.=|+..+..-+-++++.++-
T Consensus 66 ------------------------Dl-f~p~~-~~y~~a~liysirpp~el~~~~~~la~~~~~ 103 (134)
T PRK04148 66 ------------------------DL-FNPNL-EIYKNAKLIYSIRPPRDLQPFILELAKKINV 103 (134)
T ss_pred ------------------------cC-CCCCH-HHHhcCCEEEEeCCCHHHHHHHHHHHHHcCC
Confidence 01 11223 3467999999999999988888888887654
No 248
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.27 E-value=0.0074 Score=59.53 Aligned_cols=37 Identities=27% Similarity=0.436 Sum_probs=30.0
Q ss_pred EEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchhh
Q 019978 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDR 87 (333)
Q Consensus 46 I~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~ 87 (333)
|.|+|+|.+|++++..|++. + .+ +|++.+|+.+++++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~-~----~~~~v~va~r~~~~~~~ 38 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR-G----PFEEVTVADRNPEKAER 38 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT-T----CE-EEEEEESSHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcC-C----CCCcEEEEECCHHHHHH
Confidence 78999999999999999998 4 15 89999999987654
No 249
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.21 E-value=0.064 Score=48.41 Aligned_cols=34 Identities=24% Similarity=0.212 Sum_probs=30.4
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.||.|+|+|.+|+.++..|+.. |. .+++++|.+.
T Consensus 22 s~VlIiG~gglG~evak~La~~-GV----g~i~lvD~d~ 55 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLS-GI----GSLTILDDRT 55 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHc-CC----CEEEEEECCc
Confidence 6999999999999999999999 83 4799998875
No 250
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.20 E-value=0.034 Score=54.50 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=28.2
Q ss_pred CeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHh
Q 019978 147 PLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR 182 (333)
Q Consensus 147 ~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~ 182 (333)
.+.+..++++.+.++|+||.|+|+....+.++....
T Consensus 65 ~i~V~~~~~el~~~vDVVIdaT~~~~~~e~a~~~~~ 100 (341)
T PRK04207 65 GIPVAGTIEDLLEKADIVVDATPGGVGAKNKELYEK 100 (341)
T ss_pred ceEEcCChhHhhccCCEEEECCCchhhHHHHHHHHH
Confidence 466667777777889999999999988777775544
No 251
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.19 E-value=0.014 Score=51.64 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=28.5
Q ss_pred ceEEEECCCHH-HHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~m-G~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
++|.|||+|-| |..+|..|.+. | .+|++.+|+.
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~-g-----~~V~v~~r~~ 78 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNR-N-----ATVTVCHSKT 78 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhC-C-----CEEEEEECCc
Confidence 79999999987 88899999988 7 7888887763
No 252
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.14 E-value=0.016 Score=59.36 Aligned_cols=64 Identities=22% Similarity=0.251 Sum_probs=44.4
Q ss_pred cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
+|-++-.|-.-.-=+..+++. +. ....++++|+|+|.+|.+++..|++. | .+|++++|++++++
T Consensus 306 ~g~l~G~NTD~~G~~~~l~~~-~~-~~~~k~vlIiGaGgiG~aia~~L~~~-G-----~~V~i~~R~~~~~~ 369 (477)
T PRK09310 306 NGKIEGYNTDGEGLFSLLKQK-NI-PLNNQHVAIVGAGGAAKAIATTLARA-G-----AELLIFNRTKAHAE 369 (477)
T ss_pred CCEEEEEecCHHHHHHHHHhc-CC-CcCCCEEEEEcCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 444444554444444455432 21 12346899999999999999999998 8 89999999876543
No 253
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.13 E-value=0.031 Score=48.66 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=28.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWR 79 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~ 79 (333)
++|.|||+|.+|...+..|.+. | ++|++++
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~-g-----a~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDT-G-----AFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEc
Confidence 7999999999999999999998 8 9999995
No 254
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.10 E-value=0.085 Score=48.51 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=30.1
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.||.|+|+|.+|+.+|..|+.. |. .+++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~-Gv----g~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAA-GV----GKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCE
Confidence 6999999999999999999999 82 4788888775
No 255
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.09 E-value=0.036 Score=50.30 Aligned_cols=34 Identities=24% Similarity=0.157 Sum_probs=30.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
-++|.|||+|.+|...+..|.+. | ++|++++++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~-g-----a~V~VIs~~~ 43 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKY-G-----AHIVVISPEL 43 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEcCCC
Confidence 36999999999999999999998 8 8999998653
No 256
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.06 E-value=0.011 Score=53.11 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=34.2
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
|||+|||| |..|+.|+.-..++ | |+|+-+.|++.++.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R-G-----HeVTAivRn~~K~~ 38 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR-G-----HEVTAIVRNASKLA 38 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC-C-----CeeEEEEeChHhcc
Confidence 89999997 99999999999999 8 99999999997653
No 257
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.05 E-value=0.016 Score=60.85 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=35.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (333)
.++|.|+|.|.+|..++..|.+. | +++++++.|++++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g-----~~vvvID~d~~~v~~ 438 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMAN-K-----MRITVLERDISAVNL 438 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhC-C-----CCEEEEECCHHHHHH
Confidence 46899999999999999999988 7 999999999987654
No 258
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=96.04 E-value=0.06 Score=51.97 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=27.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGR 83 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~ 83 (333)
++||+|||+|.+|+.+...+.+. . +.++. +++++++
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~-~----~velvAVvdid~e 40 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRS-E----HLEPGAMVGIDPE 40 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcC-C----CcEEEEEEeCChh
Confidence 47999999999999988887654 2 15654 6788775
No 259
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.97 E-value=0.045 Score=53.63 Aligned_cols=34 Identities=29% Similarity=0.361 Sum_probs=30.6
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.||.|||+|.+|+.+|..|+.. |. .+++++|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~a-Gv----g~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRA-GV----GKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCc
Confidence 6999999999999999999999 82 3899999975
No 260
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.88 E-value=0.054 Score=53.01 Aligned_cols=24 Identities=38% Similarity=0.686 Sum_probs=21.8
Q ss_pred CCceEEEECC-CHHHHHHHHHHHHh
Q 019978 42 DPLRIVGVGA-GAWGSVFTAMLQDS 65 (333)
Q Consensus 42 ~~~kI~IIGa-G~mG~alA~~La~~ 65 (333)
+|+||+|+|| |..|.-+...|.+.
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~ 27 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEER 27 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhC
Confidence 4589999997 99999999999976
No 261
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.86 E-value=0.034 Score=53.58 Aligned_cols=44 Identities=23% Similarity=0.229 Sum_probs=34.7
Q ss_pred HHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978 154 LQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (333)
Q Consensus 154 ~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~ 202 (333)
+++.++++|+||.++-+...+.++..+.... ++++++..-|+..
T Consensus 102 l~~li~~~DvV~d~tDn~esR~L~~~~~~~~-----~k~~I~aalGfdg 145 (307)
T cd01486 102 LEELIKDHDVIFLLTDSRESRWLPTLLSAAK-----NKLVINAALGFDS 145 (307)
T ss_pred HHHHHhhCCEEEECCCCHHHHHHHHHHHHHh-----CCcEEEEEeccce
Confidence 4567899999999999999998888887654 3467777767664
No 262
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.83 E-value=0.066 Score=48.91 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=30.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.+|+|||+|.+|+.+|..|+.. |. .+++++|.+.
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~-Gv----g~i~lvD~D~ 62 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARS-GV----GNLKLVDFDV 62 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 6899999999999999999999 82 4699999884
No 263
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=95.80 E-value=0.094 Score=50.23 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=27.1
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRS 84 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~ 84 (333)
+||+|||+|.||+.++..+.+. . +.++. +++++++.
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-~----~~elvaV~d~d~es 38 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-E----HLEMVAMVGIDPES 38 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-C----CcEEEEEEeCCccc
Confidence 6999999999999887777654 2 15544 67888764
No 264
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.79 E-value=0.022 Score=43.33 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=32.5
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (333)
||+|||+|..|.-+|..|++. | .+|+++.+.+...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-g-----~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-G-----KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-T-----SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-C-----cEEEEEeccchhh
Confidence 789999999999999999998 8 8999999998765
No 265
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.68 E-value=0.031 Score=53.50 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=27.6
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEE
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIW 78 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~ 78 (333)
++|+|||. |.||..+|..|.++ | +.|++|
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~-g-----atVtv~ 188 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDK-N-----ATVTLT 188 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHC-C-----CEEEEE
Confidence 79999998 99999999999998 8 899999
No 266
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.67 E-value=0.075 Score=49.02 Aligned_cols=34 Identities=32% Similarity=0.386 Sum_probs=30.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCe--eEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~--~V~l~~r~~ 82 (333)
+||.|+|+|.+|.+++..|.+. |. . ++.+++|+.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~-G~----~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAA-GA----KPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHc-Cc----CcceEEEEeCCC
Confidence 6999999999999999999988 72 2 699999984
No 267
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=95.58 E-value=0.075 Score=53.92 Aligned_cols=92 Identities=18% Similarity=0.261 Sum_probs=63.1
Q ss_pred CCceEEEECC----CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchh
Q 019978 42 DPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (333)
Q Consensus 42 ~~~kI~IIGa----G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~ 117 (333)
++.+|+|||+ |.+|..+...|.+. | +.-.+|..++.. ++ ..
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~-g-----f~g~v~~Vnp~~-~~--------------------------i~-- 50 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEG-G-----YKGKIYPVNPKA-GE--------------------------IL-- 50 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhC-C-----CCCcEEEECCCC-Cc--------------------------cC--
Confidence 3579999999 88999999999887 7 533344444421 10 00
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEee
Q 019978 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (333)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~ 197 (333)
.+.+..++++.-+..|+++++||+..+.+++++.... + -..++.++
T Consensus 51 -----------------------------G~~~~~sl~~lp~~~Dlavi~vp~~~~~~~l~e~~~~-g----v~~~vi~s 96 (447)
T TIGR02717 51 -----------------------------GVKAYPSVLEIPDPVDLAVIVVPAKYVPQVVEECGEK-G----VKGAVVIT 96 (447)
T ss_pred -----------------------------CccccCCHHHCCCCCCEEEEecCHHHHHHHHHHHHhc-C----CCEEEEEC
Confidence 1223344555445689999999999999999998763 2 23566678
Q ss_pred ecCcc
Q 019978 198 KGVEA 202 (333)
Q Consensus 198 kGi~~ 202 (333)
.|+..
T Consensus 97 ~gf~e 101 (447)
T TIGR02717 97 AGFKE 101 (447)
T ss_pred CCccc
Confidence 88875
No 268
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.57 E-value=0.02 Score=54.67 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=31.7
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (333)
|||.|.|+ |.+|+.++..|.+. | |+|+..+|+.+.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~-g-----~~V~~l~R~~~~ 36 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE-G-----YQVRCLVRNLRK 36 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-C-----CeEEEEEcChHH
Confidence 69999996 99999999999999 8 999999998643
No 269
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.51 E-value=0.12 Score=46.57 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=30.6
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.||.|+|+|.+|+.++..|+.. |. .+++++|.+.
T Consensus 20 s~VlviG~gglGsevak~L~~~-GV----g~i~lvD~d~ 53 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLA-GI----DSITIVDHRL 53 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEECCc
Confidence 6999999999999999999999 83 5799998875
No 270
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.51 E-value=0.084 Score=43.06 Aligned_cols=48 Identities=25% Similarity=0.353 Sum_probs=33.2
Q ss_pred EEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978 149 KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (333)
Q Consensus 149 ~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~ 202 (333)
..++++++.+. +.|+||.|+++....+.+.++ +.. +..||+..||...
T Consensus 46 ~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~---L~~---G~~VVt~nk~ala 95 (117)
T PF03447_consen 46 AFTTDLEELIDDPDIDVVVECTSSEAVAEYYEKA---LER---GKHVVTANKGALA 95 (117)
T ss_dssp CEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHHH---HHT---TCEEEES-HHHHH
T ss_pred cccCCHHHHhcCcCCCEEEECCCchHHHHHHHHH---HHC---CCeEEEECHHHhh
Confidence 35678888777 899999999887777665544 444 6789999888554
No 271
>PRK08328 hypothetical protein; Provisional
Probab=95.50 E-value=0.079 Score=48.98 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=31.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
.||+|+|+|..|+.++..|+.. |. .+++++|.+.-...
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~-Gv----g~i~lvD~D~ve~s 65 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAA-GV----GRILLIDEQTPELS 65 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCccChh
Confidence 6899999999999999999999 82 47889987764333
No 272
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=95.46 E-value=0.09 Score=49.61 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=76.2
Q ss_pred CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeE-EEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
+|||+|.|+ |.||..+.+.+... . ++++ -.++|.+.... . ... ..+-+..
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-~----~~~L~aa~~~~~~~~~--g--------~d~-----------ge~~g~~-- 53 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-P----DLELVAAFDRPGSLSL--G--------SDA-----------GELAGLG-- 53 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-C----CceEEEEEecCCcccc--c--------cch-----------hhhcccc--
Confidence 689999998 99999999999877 3 1443 34566553210 0 000 0011100
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
. -.+.+++|+.....++|++|=.+-+....+.++....+ +..+|.-|.|+
T Consensus 54 ----~--------------------~gv~v~~~~~~~~~~~DV~IDFT~P~~~~~~l~~~~~~------~~~lVIGTTGf 103 (266)
T COG0289 54 ----L--------------------LGVPVTDDLLLVKADADVLIDFTTPEATLENLEFALEH------GKPLVIGTTGF 103 (266)
T ss_pred ----c--------------------cCceeecchhhcccCCCEEEECCCchhhHHHHHHHHHc------CCCeEEECCCC
Confidence 0 14556677777778999999888777776666655442 34566677799
Q ss_pred cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH
Q 019978 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE 239 (333)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e 239 (333)
+.+. . +.+++..- .+.++..||++.-
T Consensus 104 ~~e~-----~----~~l~~~a~----~v~vv~a~NfSiG 129 (266)
T COG0289 104 TEEQ-----L----EKLREAAE----KVPVVIAPNFSLG 129 (266)
T ss_pred CHHH-----H----HHHHHHHh----hCCEEEeccchHH
Confidence 8763 1 22333221 1347788888753
No 273
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.42 E-value=0.078 Score=51.88 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=27.9
Q ss_pred CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
++||+|+|+ |.-|.-|...|+.+ . ..++.++..++
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-p----~ve~~~~ss~~ 37 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-P----DVELILISSRE 37 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-C----CeEEEEeechh
Confidence 689999997 99999999999887 3 25666665554
No 274
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.41 E-value=0.021 Score=56.44 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=31.1
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.+|+|||+|.+|.+.|..|++. | ++|+++++..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g-----~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-G-----YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence 4999999999999999999999 8 9999999975
No 275
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=95.41 E-value=0.09 Score=51.64 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=28.8
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCee-EEEEecCCcchh
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVD 86 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~ 86 (333)
+..||+|||+ .||...+..+... .. +.+ |-++++++++++
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~-~~---~~eLvaV~d~~~erA~ 42 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAA-PE---RFELAGILAQGSERSR 42 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhC-CC---CcEEEEEEcCCHHHHH
Confidence 4579999999 6899888888765 20 144 457888877654
No 276
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.38 E-value=0.033 Score=58.86 Aligned_cols=40 Identities=20% Similarity=0.406 Sum_probs=35.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhh
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (333)
..+|.|+|.|.+|..++..|.++ | +++++++.|+++++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g-----~~vvvID~d~~~v~~~ 439 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS-G-----VKMTVLDHDPDHIETL 439 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC-C-----CCEEEEECCHHHHHHH
Confidence 46899999999999999999998 7 8999999999877653
No 277
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.25 E-value=0.071 Score=48.35 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=29.6
Q ss_pred EEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 46 IVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 46 I~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
|+|+|+ |..|..++..|.+. + ++|++..|+..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~-~-----~~V~~l~R~~~ 33 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA-G-----FSVRALVRDPS 33 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-T-----GCEEEEESSSH
T ss_pred CEEECCccHHHHHHHHHHHhC-C-----CCcEEEEeccc
Confidence 789997 99999999999998 7 99999999984
No 278
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.25 E-value=0.068 Score=51.01 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=41.2
Q ss_pred cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCee-EEEEecCC
Q 019978 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPG 82 (333)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~-V~l~~r~~ 82 (333)
+|-++-.|-.-.==+..+++.+. .-..+++.|+|+|-.|.+++..|++. | .. |++++|++
T Consensus 100 ~g~l~G~NTD~~G~~~~l~~~~~--~~~~k~vlI~GAGGagrAia~~La~~-G-----~~~V~I~~R~~ 160 (289)
T PRK12548 100 DGKLTGHITDGLGFVRNLREHGV--DVKGKKLTVIGAGGAATAIQVQCALD-G-----AKEITIFNIKD 160 (289)
T ss_pred CCEEEEEecCHHHHHHHHHhcCC--CcCCCEEEEECCcHHHHHHHHHHHHC-C-----CCEEEEEeCCc
Confidence 44444455544444444544322 11235899999999999999999988 8 64 99999997
No 279
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.19 E-value=0.16 Score=47.38 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=30.5
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
..||.|||+|.+|+.++..|+.. |. .+++++|.+.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~-Gv----g~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAA-GV----GTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCE
Confidence 36999999999999999999999 82 4788888875
No 280
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=95.12 E-value=0.028 Score=55.39 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=31.5
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
|+|+|||+|.+|.+.|..|++. | ++|++++++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~-g-----~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQA-G-----HEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEeCCCc
Confidence 6899999999999999999999 8 99999999753
No 281
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.11 E-value=0.38 Score=47.74 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=30.4
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.||.|+|+|.+|+.++..|+.. |. .+++++|.+.
T Consensus 42 ~~VliiG~GglG~~v~~~La~~-Gv----g~i~ivD~D~ 75 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASA-GV----GTITLIDDDT 75 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEeCCE
Confidence 6899999999999999999999 82 4799998884
No 282
>PRK06153 hypothetical protein; Provisional
Probab=95.07 E-value=0.14 Score=51.01 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=29.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.||+|||+|..|+.++..|++. |. -+++++|.+.
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~-GV----geI~LVD~D~ 210 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKT-PV----REIHLFDGDD 210 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHc-CC----CEEEEECCCE
Confidence 5999999999999999999999 82 4788888774
No 283
>PRK06753 hypothetical protein; Provisional
Probab=95.04 E-value=0.03 Score=54.37 Aligned_cols=34 Identities=26% Similarity=0.512 Sum_probs=32.1
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
|+|.|||+|.-|.++|..|++. | ++|+++.++++
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~-g-----~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ-G-----HEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCc
Confidence 6899999999999999999999 8 99999999875
No 284
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.98 E-value=0.17 Score=47.12 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=31.5
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (333)
.||.|+|+|.+|+.++..|+.. |. .+++++|.+.-..
T Consensus 25 ~~VlvvG~GglGs~va~~La~~-Gv----g~i~lvD~D~ve~ 61 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAA-GV----GNLTLLDFDTVSL 61 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHc-CC----CEEEEEeCCcccc
Confidence 6999999999999999999999 82 4788988876433
No 285
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.96 E-value=0.025 Score=55.83 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=38.5
Q ss_pred hHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 30 DELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 30 ~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
+||+-+.+++. .++|.|||+|.-|.++|..|++. | ++|+++++.+.
T Consensus 7 ~~~~~~~~~~~--~~dV~IvGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 52 (415)
T PRK07364 7 TSPTLPSTRSL--TYDVAIVGGGIVGLTLAAALKDS-G-----LRIALIEAQPA 52 (415)
T ss_pred CCCCCCCCCcc--ccCEEEECcCHHHHHHHHHHhcC-C-----CEEEEEecCCc
Confidence 45555666555 46899999999999999999999 8 99999999764
No 286
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=94.95 E-value=0.17 Score=49.74 Aligned_cols=41 Identities=10% Similarity=0.055 Sum_probs=30.6
Q ss_pred HHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (333)
Q Consensus 156 ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~ 202 (333)
+++.++|+||+|+|...-.++..++.. . ++.||.++.-+-.
T Consensus 65 ~~~~~~D~vf~a~p~~~s~~~~~~~~~---~---g~~VIDlS~~fR~ 105 (344)
T PLN02383 65 DSFDGVDIALFSAGGSISKKFGPIAVD---K---GAVVVDNSSAFRM 105 (344)
T ss_pred HHHcCCCEEEECCCcHHHHHHHHHHHh---C---CCEEEECCchhhc
Confidence 346789999999999988877776543 2 5788888755543
No 287
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.94 E-value=0.35 Score=47.67 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=30.4
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.||.|+|+|..|+.++..|+.. |. .+++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~-Gv----g~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGA-GV----GHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 6999999999999999999999 82 4789998885
No 288
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.86 E-value=0.096 Score=50.12 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=46.3
Q ss_pred cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (333)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (333)
+|-++-.|-.-.-=+..+++...-....-+++.|+|||-.+.+++..|++. |. .++++++|+.+++++
T Consensus 98 ~g~l~G~NTD~~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-g~----~~i~V~NRt~~ra~~ 165 (283)
T COG0169 98 DGKLRGYNTDGIGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-GA----KRITVVNRTRERAEE 165 (283)
T ss_pred CCEEEEEcCCHHHHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-CC----CEEEEEeCCHHHHHH
Confidence 455555555444444444442211111237899999999999999999999 82 479999999987654
No 289
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.84 E-value=0.45 Score=47.09 Aligned_cols=34 Identities=26% Similarity=0.309 Sum_probs=30.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.||.|+|+|..|+.++..|+.. |. -+++++|++.
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~-Gv----g~i~lvD~d~ 169 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAA-GV----GTLGIVDHDV 169 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 6899999999999999999999 82 3799999883
No 290
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.78 E-value=0.12 Score=41.64 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=30.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
..+|.|||+|.+|..=+..|.+. | .+|++++.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~-g-----A~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEA-G-----AKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCC-T-----BEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCch
Confidence 36999999999999999999998 8 8999999885
No 291
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=94.76 E-value=0.15 Score=49.42 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=29.1
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 157 a~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
...++|++|+|+|...-.++..++.. . ++.||.++.-+-
T Consensus 47 ~~~~~DvvFlalp~~~s~~~~~~~~~---~---g~~VIDlSadfR 85 (313)
T PRK11863 47 LLNAADVAILCLPDDAAREAVALIDN---P---ATRVIDASTAHR 85 (313)
T ss_pred hhcCCCEEEECCCHHHHHHHHHHHHh---C---CCEEEECChhhh
Confidence 34679999999999987777777643 2 577888775554
No 292
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.76 E-value=0.23 Score=48.90 Aligned_cols=39 Identities=8% Similarity=0.093 Sum_probs=29.5
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 157 a~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
.+.+.|++|+|+|...-.++..++.. . ++.||.++.-+-
T Consensus 65 ~~~~~Divf~a~~~~~s~~~~~~~~~---~---G~~VID~Ss~fR 103 (347)
T PRK06728 65 SFEGVDIAFFSAGGEVSRQFVNQAVS---S---GAIVIDNTSEYR 103 (347)
T ss_pred HhcCCCEEEECCChHHHHHHHHHHHH---C---CCEEEECchhhc
Confidence 35789999999999988877777543 2 578888775554
No 293
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=94.72 E-value=0.048 Score=51.53 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=30.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (333)
.+|+|||+|.-|.++|..|+++ | ++|+++.+.++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-G-----~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-G-----IDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-T-----CEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhc-c-----cccccchhcccc
Confidence 4799999999999999999999 8 999999998764
No 294
>PRK10206 putative oxidoreductase; Provisional
Probab=94.70 E-value=0.14 Score=50.04 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=24.8
Q ss_pred EEecCHHHHhc--CCCEEEEecCchhHHHHHHHHH
Q 019978 149 KVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS 181 (333)
Q Consensus 149 ~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~ 181 (333)
.+.+|.++.++ +.|+|++++|.....++.....
T Consensus 51 ~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~~~al 85 (344)
T PRK10206 51 HFTSDLDEVLNDPDVKLVVVCTHADSHFEYAKRAL 85 (344)
T ss_pred cccCCHHHHhcCCCCCEEEEeCCchHHHHHHHHHH
Confidence 34577888775 5799999999987766665544
No 295
>PRK06349 homoserine dehydrogenase; Provisional
Probab=94.69 E-value=0.15 Score=51.50 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHh
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~ 65 (333)
++||+|+|+|.+|..++..|.++
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~ 25 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEEN 25 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHh
Confidence 47999999999999999888654
No 296
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=94.67 E-value=0.046 Score=53.66 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=32.6
Q ss_pred CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
..+.+|.|||+|..|.++|..|++. | ++|+++++.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~-G-----~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADA-G-----LSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-C-----CEEEEEeCCC
Confidence 4556899999999999999999999 8 9999999975
No 297
>PRK05868 hypothetical protein; Validated
Probab=94.64 E-value=0.043 Score=53.92 Aligned_cols=36 Identities=19% Similarity=0.138 Sum_probs=32.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (333)
|++|+|||+|..|.++|..|++. | ++|+++++.++.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~-G-----~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRH-G-----YSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-C-----CCEEEEcCCCCC
Confidence 57999999999999999999999 8 999999998753
No 298
>PRK06847 hypothetical protein; Provisional
Probab=94.56 E-value=0.053 Score=52.60 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=32.7
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
.+++|+|||+|.-|.++|..|++. | ++|+++.++++
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~-g-----~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRA-G-----IAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCCC
Confidence 357999999999999999999998 8 99999998764
No 299
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.50 E-value=0.12 Score=49.47 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=27.9
Q ss_pred ceEEEECCCH-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978 44 LRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (333)
Q Consensus 44 ~kI~IIGaG~-mG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (333)
++|+|||.|. +|..+|..|... | ..|+++.+.
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~-g-----atVtv~~s~ 191 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQK-N-----ASVTILHSR 191 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHC-C-----CeEEEEeCC
Confidence 7999999988 999999999988 7 788887653
No 300
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.49 E-value=0.52 Score=45.98 Aligned_cols=240 Identities=17% Similarity=0.196 Sum_probs=133.9
Q ss_pred CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
+++.++.++|+|...--+|.-+..+ | +..+-+++|...+-++ +.+.++... ..++++.. .
T Consensus 2 ~~m~~vLllGtGpvaIQlAv~l~~h-~----d~~lg~~~r~s~rse~-----l~qala~~~---------ql~l~~q~-e 61 (431)
T COG4408 2 HNMLPVLLLGTGPVAIQLAVDLSAH-G----DARLGLYNRPSTRSER-----LKQALALTP---------QLYLQGQG-E 61 (431)
T ss_pred CcccceeEeecCcHHHHHHHHHHhc-c----CceeeccCCCCchhHH-----HHHHHhcCC---------eEEEEecc-H
Confidence 4577999999999999999999888 6 2678889887754333 333333221 12232210 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHh-hhhccCCCCEEEEeeec
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR-YWKERITVPVIISLAKG 199 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~-~l~~~~~~~~Ivs~~kG 199 (333)
. .+.+ +-.+.++ .+..|++++..+-+-+|+|||.++.-+++.+|.- .++. -+.+|-++..
T Consensus 62 a-hr~l------eg~~~id---------~~~kd~a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~---vk~viLiSpt 122 (431)
T COG4408 62 A-HRQL------EGSVTID---------CYIKDLAQAVGDWQTLILAVPADAYYDVLQQIPWEALPQ---VKSVILISPT 122 (431)
T ss_pred H-HHhh------cCceehh---------HHHhhHHHhhchhheEEEEeecHHHHHHHhcCCHhHhcc---ccEEEEeccc
Confidence 0 0000 0001111 1346788888899999999999999999999863 2332 3344444444
Q ss_pred CcccccCCccCCCHHHHHHhHhCCCCC-----------cEEEEcCCCchHHHhccCceeEE-EeCChhhHHHHHHHhCCC
Q 019978 200 VEAELEAVPRIITPTQMINRATGVPIE-----------NILYLGGPNIASEIYNKEYANAR-ICGAEKWRKPLAKFLRRP 267 (333)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~-----------~~~vl~GP~~a~ev~~~~~~~~~-~~~~~~~~~~l~~ll~~~ 267 (333)
++.. ..++.++.+ +|.... .+.--.-|+++-.-+-++-.+.. --++...++.+..+|...
T Consensus 123 fGsn-------~lv~~~mnk-~~~daeViS~SsY~~dTk~id~~~p~~alTkavKkriYlgs~~~ns~~~e~l~~v~aq~ 194 (431)
T COG4408 123 FGSN-------LLVQNLMNK-AGRDAEVISLSSYYADTKYIDAEQPNRALTKAVKKRIYLGSQHGNSGSAEMLTAVLAQH 194 (431)
T ss_pred cccc-------HHHHHHHhh-hCCCceEEEeehhcccceeecccCcchHHHHHHhHheeeccCCCCChHHHHHHHHHHhc
Confidence 4432 223333322 332210 01111235554322211111111 123456788999999999
Q ss_pred CeEEEecCChhHHHHHH--------HHHHHHHHHHHHHhccC---------CCCCc--cHHHHHHHHHHHHHHH-HHCCC
Q 019978 268 HFTVWDNGDLVTHEVMG--------GLKNVYAIGAGMVAALT---------NESAT--SKSVYFAHCTSEMVVM-HGMGR 327 (333)
Q Consensus 268 ~~~v~~s~Di~gve~~~--------alkNv~Ai~~Gi~~gl~---------~~~~n--~~~~l~~~~~~E~~~l-~~~G~ 327 (333)
++.+...+....+|--. .+.|=.++.+ |..+.. -.|.- ..-.-|..--+|+..+ .++|.
T Consensus 195 ~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~a-if~~~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~v 273 (431)
T COG4408 195 GIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQA-IFYPEQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGV 273 (431)
T ss_pred CCceEEcCChhhhhhcccceeecCcchhhhhHHHH-HhCCcCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999988443 2444444432 222111 11222 2224566777899998 89986
Q ss_pred C
Q 019978 328 S 328 (333)
Q Consensus 328 ~ 328 (333)
.
T Consensus 274 e 274 (431)
T COG4408 274 E 274 (431)
T ss_pred C
Confidence 5
No 301
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.48 E-value=0.39 Score=46.63 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=30.5
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (333)
||.|||+|.+|+.++..|+.. |. .+++++|.+.=..
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-Gv----g~ItIvD~D~Ve~ 36 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-GF----GEIHIIDLDTIDL 36 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-cC----CeEEEEcCCCcch
Confidence 689999999999999999999 83 5799998876333
No 302
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.48 E-value=0.2 Score=47.89 Aligned_cols=62 Identities=18% Similarity=0.214 Sum_probs=41.2
Q ss_pred cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
+|-++-.|-.-.==+..++.. +.. ...+++.|+|+|-.+.+++..|+.. |. .+|++++|+++
T Consensus 98 ~g~l~G~NTD~~Gf~~~l~~~-~~~-~~~k~vlvlGaGGaarAi~~~l~~~-g~----~~i~i~nRt~~ 159 (288)
T PRK12749 98 DGYLRGYNTDGTGHIRAIKES-GFD-IKGKTMVLLGAGGASTAIGAQGAIE-GL----KEIKLFNRRDE 159 (288)
T ss_pred CCEEEEEecCHHHHHHHHHhc-CCC-cCCCEEEEECCcHHHHHHHHHHHHC-CC----CEEEEEeCCcc
Confidence 344444454444434444432 211 1235899999999999999999887 72 48999999965
No 303
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=94.42 E-value=0.15 Score=49.95 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=28.9
Q ss_pred HHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 156 ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
+.+.++|++|+|+|+....+++..+.. . +..||+++.-+
T Consensus 57 ~~~~~~D~v~~a~g~~~s~~~a~~~~~---~---G~~VID~ss~~ 95 (339)
T TIGR01296 57 ESFEGIDIALFSAGGSVSKEFAPKAAK---C---GAIVIDNTSAF 95 (339)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHH---C---CCEEEECCHHH
Confidence 345789999999999988888776643 3 56788766433
No 304
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=94.37 E-value=0.29 Score=47.78 Aligned_cols=38 Identities=32% Similarity=0.330 Sum_probs=27.3
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (333)
Q Consensus 157 a~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi 200 (333)
...++|+|++|+|+....++.+.+.. . ++.+|.++.-+
T Consensus 70 ~~~~~DvVf~a~p~~~s~~~~~~~~~---~---G~~VIDlsg~f 107 (341)
T TIGR00978 70 ASKDVDIVFSALPSEVAEEVEPKLAE---A---GKPVFSNASNH 107 (341)
T ss_pred HhccCCEEEEeCCHHHHHHHHHHHHH---C---CCEEEECChhh
Confidence 45789999999999988877766543 2 45666665443
No 305
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.36 E-value=0.062 Score=52.61 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=32.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
+++|+|||+|..|.++|..|++. | ++|+++++.++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~-g-----~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQ-G-----IKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhC-C-----CcEEEEeeCcc
Confidence 46999999999999999999999 8 99999999875
No 306
>PRK06270 homoserine dehydrogenase; Provisional
Probab=94.33 E-value=0.2 Score=48.96 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=30.7
Q ss_pred ecCHHHHhc--CCCEEEEecCchh--HHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978 151 VTNLQEAVW--DADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 151 t~d~~ea~~--~aDlIIlaVps~~--~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
+.|+++.+. +.|+|+.++|+.. .+...+.+...+.. +..||+..|+..
T Consensus 78 ~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~---GkhVVtaNK~pl 129 (341)
T PRK06270 78 EISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALER---GKHVVTSNKGPL 129 (341)
T ss_pred cCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHC---CCEEEcCCcHHH
Confidence 457777663 6899999999854 23334444555555 677887666543
No 307
>PRK07588 hypothetical protein; Provisional
Probab=94.23 E-value=0.059 Score=52.89 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=31.6
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
|+|+|||+|..|.++|..|++. | ++|+++.+.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY-G-----HEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC-C-----CceEEEeCCCC
Confidence 5899999999999999999999 8 99999998764
No 308
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=94.19 E-value=0.49 Score=45.35 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=30.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
.||.|+|+|.+|+.+|..|+.. |. ..++++|.+.=
T Consensus 20 s~VLIvG~gGLG~EiaKnLala-GV----g~itI~D~d~v 54 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILA-GV----KSVTLHDTKPC 54 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHHHc-CC----CeEEEEcCCcc
Confidence 6999999999999999999999 83 47999988763
No 309
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=94.14 E-value=0.29 Score=51.71 Aligned_cols=45 Identities=24% Similarity=0.258 Sum_probs=34.4
Q ss_pred CHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (333)
Q Consensus 153 d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~ 202 (333)
++.+.++++|+||.|+-+...+.++..+.... ++++|+.+-|+..
T Consensus 441 ~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~-----~kplI~aAlGfdg 485 (664)
T TIGR01381 441 RLEQLIKDHDVVFLLLDSREARWLPTVLCSRH-----KKIAISAALGFDS 485 (664)
T ss_pred HHHHHHhhCCEEEECCCCHHHHHHHHHHHHHh-----CCCEEEEEeccce
Confidence 35567889999999999999998888877543 3567777667654
No 310
>PRK07538 hypothetical protein; Provisional
Probab=94.07 E-value=0.066 Score=53.13 Aligned_cols=34 Identities=15% Similarity=0.390 Sum_probs=31.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
|+|+|||+|.-|.++|..|++. | ++|+++.+.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR-G-----IEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-C-----CcEEEEEcCCc
Confidence 6899999999999999999999 8 99999999874
No 311
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=94.01 E-value=0.33 Score=47.60 Aligned_cols=98 Identities=15% Similarity=0.122 Sum_probs=60.7
Q ss_pred CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
+.+||+|||| |..|.-|...|++. . + +..++.++..+.. +- +.+. +
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~-~-h-P~~~l~~laS~~s-aG-------------------------~~~~-~--- 49 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAER-Q-F-PVGELYALASEES-AG-------------------------ETLR-F--- 49 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcC-C-C-CceEEEEEEccCc-CC-------------------------ceEE-E---
Confidence 5689999998 99999999999984 2 0 1146666644432 11 0111 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHH-HhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE-AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~e-a~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG 199 (333)
.. ..+.+. ++++ ...++|++|+|+|...-.++..++.. . ++.||.++.-
T Consensus 50 -~~----------------------~~~~v~-~~~~~~~~~~Dvvf~a~p~~~s~~~~~~~~~---~---g~~VIDlS~~ 99 (336)
T PRK08040 50 -GG----------------------KSVTVQ-DAAEFDWSQAQLAFFVAGREASAAYAEEATN---A---GCLVIDSSGL 99 (336)
T ss_pred -CC----------------------cceEEE-eCchhhccCCCEEEECCCHHHHHHHHHHHHH---C---CCEEEECChH
Confidence 00 012332 2222 23689999999999977777776643 2 5788888755
Q ss_pred Ccc
Q 019978 200 VEA 202 (333)
Q Consensus 200 i~~ 202 (333)
+-.
T Consensus 100 fRl 102 (336)
T PRK08040 100 FAL 102 (336)
T ss_pred hcC
Confidence 543
No 312
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.96 E-value=0.12 Score=50.01 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=34.6
Q ss_pred cCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 38 KAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 38 ~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
-+...+-||+|||.|..|+--|+...-- | -+|++.+++.+++.
T Consensus 163 vpGV~~~kv~iiGGGvvgtnaAkiA~gl-g-----A~Vtild~n~~rl~ 205 (371)
T COG0686 163 VPGVLPAKVVVLGGGVVGTNAAKIAIGL-G-----ADVTILDLNIDRLR 205 (371)
T ss_pred CCCCCCccEEEECCccccchHHHHHhcc-C-----CeeEEEecCHHHHh
Confidence 3445567999999999999988887655 6 89999999986543
No 313
>PRK07236 hypothetical protein; Provisional
Probab=93.95 E-value=0.093 Score=51.52 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=32.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
+++|+|||+|.-|.++|..|++. | ++|+++.+.+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 40 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRA-G-----WDVDVFERSPT 40 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCCC
Confidence 37999999999999999999999 8 99999999864
No 314
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.92 E-value=0.54 Score=42.72 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=30.4
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
+||.|||+|.+|..-+..|.+. | .+|++++.+.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~-g-----a~VtVvsp~~ 42 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKA-G-----AQLRVIAEEL 42 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-C-----CEEEEEcCCC
Confidence 5999999999999999999998 8 8999998765
No 315
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=93.89 E-value=0.11 Score=38.67 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=27.2
Q ss_pred EECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 48 GVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 48 IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
|||+|.-|.+.|..|++. | ++|+++.++..
T Consensus 1 IiGaG~sGl~aA~~L~~~-g-----~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-G-----YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-T-----SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-C-----CcEEEEecCcc
Confidence 899999999999999999 8 99999999874
No 316
>PRK10537 voltage-gated potassium channel; Provisional
Probab=93.78 E-value=0.47 Score=47.47 Aligned_cols=33 Identities=9% Similarity=-0.016 Sum_probs=28.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (333)
...|.|+|.|.+|..++..|.+. | ++|++++.+
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~-g-----~~vvVId~d 272 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQR-G-----QAVTVIVPL 272 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHC-C-----CCEEEEECc
Confidence 35799999999999999999887 7 888888865
No 317
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=93.73 E-value=0.1 Score=49.35 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=29.5
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (333)
.|+|||+|..|.+.|..|++. | ++|++++++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~-G-----~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR-G-----HSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT-T-----SEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeec
Confidence 489999999999999999999 8 999999998
No 318
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=93.66 E-value=0.73 Score=44.29 Aligned_cols=93 Identities=16% Similarity=0.185 Sum_probs=62.8
Q ss_pred CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc-hhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS-VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (333)
Q Consensus 42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~-~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (333)
...||.|.|. |.+|..+...|.+. | ++ .+|-.++.. .++ +
T Consensus 7 ~~~~~~v~~~~~~~g~~~l~~l~~~-g-----~~-~v~pVnp~~~~~~--------------------------v----- 48 (291)
T PRK05678 7 KDTKVIVQGITGKQGTFHTEQMLAY-G-----TN-IVGGVTPGKGGTT--------------------------V----- 48 (291)
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHC-C-----CC-EEEEECCCCCCCe--------------------------E-----
Confidence 3469999996 99999999999876 6 55 555444421 110 0
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEee
Q 019978 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (333)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~--aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~ 197 (333)
..+.+..++++.-+. .|+.+++||...+.+++++.... . -..++.++
T Consensus 49 --------------------------~G~~~y~sv~dlp~~~~~DlAvi~vp~~~v~~~l~e~~~~-g----vk~avI~s 97 (291)
T PRK05678 49 --------------------------LGLPVFNTVAEAVEATGANASVIYVPPPFAADAILEAIDA-G----IDLIVCIT 97 (291)
T ss_pred --------------------------eCeeccCCHHHHhhccCCCEEEEEcCHHHHHHHHHHHHHC-C----CCEEEEEC
Confidence 023444556665444 89999999999999999997752 1 23556678
Q ss_pred ecCccc
Q 019978 198 KGVEAE 203 (333)
Q Consensus 198 kGi~~~ 203 (333)
.|+..+
T Consensus 98 ~Gf~~~ 103 (291)
T PRK05678 98 EGIPVL 103 (291)
T ss_pred CCCCHH
Confidence 888643
No 319
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=93.63 E-value=0.85 Score=43.50 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=32.9
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
..-||+|+|+|.+|.+.|..+..+ | +. .++.++|-++++++
T Consensus 19 ~~~KItVVG~G~VGmAca~siL~k-~-La--del~lvDv~~dklk 59 (332)
T KOG1495|consen 19 KHNKITVVGVGQVGMACAISILLK-G-LA--DELVLVDVNEDKLK 59 (332)
T ss_pred cCceEEEEccchHHHHHHHHHHHh-h-hh--hceEEEecCcchhh
Confidence 346999999999999999997666 5 11 47899999988654
No 320
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=93.63 E-value=0.54 Score=46.08 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=27.8
Q ss_pred CceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 43 ~~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
++||+|+| .|.+|..+...|.+. . ..+++.+.+++.
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~-p----~~el~~~~~s~~ 39 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANH-P----WFEVTALAASER 39 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcC-C----CceEEEEEcChh
Confidence 47999999 699999999999876 3 147777755543
No 321
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=93.61 E-value=0.58 Score=43.53 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=29.1
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
||.|+|+|..|+.++..|+.. |. -+++++|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~-Gv----g~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-GF----GQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 689999999999999999998 82 4788888875
No 322
>PRK14982 acyl-ACP reductase; Provisional
Probab=93.53 E-value=0.22 Score=48.84 Aligned_cols=50 Identities=20% Similarity=0.204 Sum_probs=35.2
Q ss_pred HHHhhccCCCCCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 32 LRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 32 ~~~~~~~~~~~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
-..+++.. -..++|.|+|| |.||+.++..|+...|. .++++++|+++.+.
T Consensus 145 a~~~lg~~-l~~k~VLVtGAtG~IGs~lar~L~~~~gv----~~lilv~R~~~rl~ 195 (340)
T PRK14982 145 NAPRLGID-LSKATVAVVGATGDIGSAVCRWLDAKTGV----AELLLVARQQERLQ 195 (340)
T ss_pred hHHHhccC-cCCCEEEEEccChHHHHHHHHHHHhhCCC----CEEEEEcCCHHHHH
Confidence 34445531 23379999999 89999999999754130 47999999876543
No 323
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=93.51 E-value=0.095 Score=51.96 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=31.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~ 83 (333)
|||+|||+|.-|.++|..|++. | + +|+++.+.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~-g-----~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKH-S-----HLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhc-C-----CCCEEEEecCCc
Confidence 6899999999999999999998 7 5 8999999875
No 324
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=93.50 E-value=0.36 Score=46.83 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=29.0
Q ss_pred HHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 156 ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
+.+.++|++|+|+|...-.++...+.. . ++.||.++.-+-
T Consensus 45 ~~~~~~D~vFlalp~~~s~~~~~~~~~---~---g~~VIDlSadfR 84 (310)
T TIGR01851 45 KLLNAADVAILCLPDDAAREAVSLVDN---P---NTCIIDASTAYR 84 (310)
T ss_pred HhhcCCCEEEECCCHHHHHHHHHHHHh---C---CCEEEECChHHh
Confidence 445689999999999987777776542 2 567887765443
No 325
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=93.47 E-value=0.19 Score=47.71 Aligned_cols=64 Identities=19% Similarity=0.194 Sum_probs=43.8
Q ss_pred cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
+|-++-.|-.-.==+.+++. .+... ..++.|+|+|-.+.+++..|++. |. .+|++++|+.++++
T Consensus 97 ~g~l~G~NTD~~Gf~~~L~~-~~~~~--~~~vlilGaGGaarAi~~aL~~~-g~----~~i~i~nR~~~~a~ 160 (272)
T PRK12550 97 DGHLKAYNTDYIAIAKLLAS-YQVPP--DLVVALRGSGGMAKAVAAALRDA-GF----TDGTIVARNEKTGK 160 (272)
T ss_pred CCEEEEEecCHHHHHHHHHh-cCCCC--CCeEEEECCcHHHHHHHHHHHHC-CC----CEEEEEeCCHHHHH
Confidence 34444445444444445543 23322 24899999999999999999987 71 36999999987654
No 326
>PRK06392 homoserine dehydrogenase; Provisional
Probab=93.46 E-value=0.34 Score=47.28 Aligned_cols=41 Identities=10% Similarity=0.085 Sum_probs=28.3
Q ss_pred cCCCEEEEecCchh-HHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978 159 WDADIVINGLPSTE-TKEVFEEISRYWKERITVPVIISLAKGVEA 202 (333)
Q Consensus 159 ~~aDlIIlaVps~~-~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~ 202 (333)
.++|++|.|+|+.. -......+.+.+.. +..||+..||.-.
T Consensus 80 ~~~DVvVE~t~~~~~g~~~~~~~~~aL~~---G~hVVTaNKgalA 121 (326)
T PRK06392 80 IKPDVIVDVTPASKDGIREKNLYINAFEH---GIDVVTANKSGLA 121 (326)
T ss_pred CCCCEEEECCCCCCcCchHHHHHHHHHHC---CCEEEcCCHHHHH
Confidence 36899999998532 12235556666766 7789998888654
No 327
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.36 E-value=0.25 Score=47.37 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=24.8
Q ss_pred ceEEEECCCHH-HHHHHHHHHHhcCCCCCCeeEEEE
Q 019978 44 LRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIW 78 (333)
Q Consensus 44 ~kI~IIGaG~m-G~alA~~La~~~G~~~~~~~V~l~ 78 (333)
++|+|||.|.. |..+|..|.+. | ..|+++
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~-~-----atVt~~ 188 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQA-G-----ATVTIC 188 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHC-C-----CEEEEe
Confidence 68999998777 99999999887 6 778775
No 328
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=93.32 E-value=0.14 Score=48.52 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=37.3
Q ss_pred CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhh
Q 019978 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (333)
Q Consensus 42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (333)
.++++.|-|| +-+|..+|..||++ | ++|.++.|++++++++.
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~-g-----~~liLvaR~~~kL~~la 47 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARR-G-----YNLILVARREDKLEALA 47 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEeCcHHHHHHHH
Confidence 3468999997 99999999999999 8 99999999999887654
No 329
>PRK07411 hypothetical protein; Validated
Probab=93.30 E-value=0.59 Score=46.63 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=30.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.||.|||+|.+|+.++..|+.. |. -+++++|.+.
T Consensus 39 ~~VlivG~GGlG~~va~~La~~-Gv----g~l~lvD~D~ 72 (390)
T PRK07411 39 ASVLCIGTGGLGSPLLLYLAAA-GI----GRIGIVDFDV 72 (390)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CEEEEECCCE
Confidence 6999999999999999999999 82 4788888875
No 330
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=93.23 E-value=0.77 Score=45.81 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=30.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.||.|||+|.+|+.+|..|+.. |. .+++++|.+.
T Consensus 43 ~~VlviG~GGlGs~va~~La~~-Gv----g~i~lvD~D~ 76 (392)
T PRK07878 43 ARVLVIGAGGLGSPTLLYLAAA-GV----GTLGIVEFDV 76 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHc-CC----CeEEEECCCE
Confidence 6999999999999999999998 82 4788988875
No 331
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=93.22 E-value=0.11 Score=51.37 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=31.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (333)
.+.|+|||+|..|.++|..|++. | ++|+++.+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-G-----~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-G-----LDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-C-----CcEEEEccC
Confidence 46899999999999999999999 8 999999998
No 332
>PRK06475 salicylate hydroxylase; Provisional
Probab=93.18 E-value=0.11 Score=51.29 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=31.7
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
.||+|||+|.-|.++|..|++. | ++|+++.+.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~-G-----~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR-G-----WAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCc
Confidence 5899999999999999999999 8 99999999875
No 333
>PRK06185 hypothetical protein; Provisional
Probab=93.15 E-value=0.13 Score=50.69 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=32.2
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
....|.|||+|..|.++|..|++. | ++|+++++.+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~-G-----~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARA-G-----VDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCc
Confidence 346899999999999999999998 8 99999998753
No 334
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=93.13 E-value=0.12 Score=50.13 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=29.9
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.|+|||+|.+|.++|..|++. | ++|+++++..
T Consensus 5 dv~IIGgGi~G~s~A~~L~~~-g-----~~V~lie~~~ 36 (376)
T PRK11259 5 DVIVIGLGSMGSAAGYYLARR-G-----LRVLGLDRFM 36 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccc
Confidence 599999999999999999999 8 9999999875
No 335
>PRK08223 hypothetical protein; Validated
Probab=93.03 E-value=0.63 Score=44.64 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=30.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.||.|||+|.+|+.++..|+.. |. .+++++|.+.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~a-GV----G~i~lvD~D~ 61 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARL-GI----GKFTIADFDV 61 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHh-CC----CeEEEEeCCC
Confidence 6999999999999999999999 83 4788888875
No 336
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=93.02 E-value=0.19 Score=38.94 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=29.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r 80 (333)
.++++|+|+|.+|..++..+... + +.+|.+|+|
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~-~----~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADE-G----GKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-C----CCEEEEEcC
Confidence 47999999999999999999887 4 268999998
No 337
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=92.93 E-value=0.5 Score=46.94 Aligned_cols=39 Identities=23% Similarity=0.224 Sum_probs=28.8
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHhhhhccCCC--CEEEEeeecCc
Q 019978 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITV--PVIISLAKGVE 201 (333)
Q Consensus 157 a~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~--~~Ivs~~kGi~ 201 (333)
.+.++|++|+|+|+..-.++..++.. . + ++||..+.-+-
T Consensus 62 ~~~~~Divf~a~~~~~s~~~~~~~~~---a---G~~~~VID~Ss~fR 102 (369)
T PRK06598 62 ALKKLDIIITCQGGDYTNEVYPKLRA---A---GWQGYWIDAASTLR 102 (369)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHh---C---CCCeEEEECChHHh
Confidence 35789999999999988888777654 2 4 45777765544
No 338
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=92.92 E-value=0.12 Score=50.59 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=30.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
+.+|.|||+|..|.++|..|++. | ++|+++++.+
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~-G-----~~v~l~E~~~ 34 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQK-G-----IKTTIFESKS 34 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcC-C-----CeEEEecCCC
Confidence 35899999999999999999999 8 9999999863
No 339
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=92.91 E-value=0.14 Score=50.03 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=31.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
.+|.|||+|..|.++|..|++. | ++|+++++.+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~-G-----~~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARA-G-----ASVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcC-C-----CeEEEEeCCCC
Confidence 5799999999999999999998 8 99999999764
No 340
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.89 E-value=0.29 Score=49.09 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=31.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.++|.|+|+|..|.++|..|++. | ++|++++++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~-G-----~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKL-G-----AKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCc
Confidence 37999999999999999999999 8 9999999975
No 341
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=92.87 E-value=0.14 Score=50.49 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=31.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
.+|.|||+|..|.++|..|++. | ++|+++++.++
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~-G-----~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKA-G-----IDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHC-C-----CCEEEEECCCC
Confidence 5899999999999999999999 8 99999999874
No 342
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=92.87 E-value=0.17 Score=49.14 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=31.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.++|+|||+|.+|.+.|..|++. | ++|+++++.+
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~-G-----~~V~vie~~~ 37 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAER-G-----ADVTVLEAGE 37 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHc-C-----CEEEEEecCc
Confidence 47999999999999999999999 8 8999998766
No 343
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.82 E-value=0.33 Score=48.49 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=31.5
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (333)
++|.|||.|.+|.++|..|.+. | ++|+++|++++.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~-G-----~~V~g~D~~~~~ 38 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK-G-----VYVIGVDKSLEA 38 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC-C-----CEEEEEeCCccc
Confidence 5899999999999999999988 8 899999987653
No 344
>PRK07045 putative monooxygenase; Reviewed
Probab=92.76 E-value=0.16 Score=49.72 Aligned_cols=37 Identities=22% Similarity=0.448 Sum_probs=33.3
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (333)
..++|.|||+|.-|.++|..|++. | ++|+++.+.++.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~-G-----~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGAR-G-----HSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhc-C-----CcEEEEeCCCcc
Confidence 346899999999999999999999 8 999999988753
No 345
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=92.72 E-value=0.58 Score=44.65 Aligned_cols=107 Identities=12% Similarity=0.168 Sum_probs=51.4
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
.+.||++||+|.+-.+.-...... |. +..|.-+|++++..+..+ +++++. .++
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~-~~---~~~v~~iD~d~~A~~~a~-----~lv~~~--------------~~L---- 172 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQH-GP---GARVHNIDIDPEANELAR-----RLVASD--------------LGL---- 172 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--H-TT-----EEEEEESSHHHHHHHH-----HHHH-----------------HH----
T ss_pred ccceEEEEcCCCcchHHHHHHHHh-CC---CCeEEEEeCCHHHHHHHH-----HHHhhc--------------ccc----
Confidence 457999999999988766665443 30 146888999997544211 112210 011
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEE-ecCH---HHHhcCCCEEEEecCch----hHHHHHHHHHhhhhccCCCCEE
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKV-VTNL---QEAVWDADIVINGLPST----ETKEVFEEISRYWKERITVPVI 193 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~-t~d~---~ea~~~aDlIIlaVps~----~~~~vl~~i~~~l~~~~~~~~I 193 (333)
++ ++.+ +.|. ...+.++|+|++|--.. ...++++++.+++++ ++.|
T Consensus 173 ~~-----------------------~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~---ga~l 226 (276)
T PF03059_consen 173 SK-----------------------RMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAP---GARL 226 (276)
T ss_dssp -S-----------------------SEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-T---TSEE
T ss_pred cC-----------------------CeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCC---CcEE
Confidence 00 1222 1222 12356889999988766 899999999999988 6655
Q ss_pred EE-eeecCc
Q 019978 194 IS-LAKGVE 201 (333)
Q Consensus 194 vs-~~kGi~ 201 (333)
+. ..+|+-
T Consensus 227 ~~Rsa~GlR 235 (276)
T PF03059_consen 227 VVRSAHGLR 235 (276)
T ss_dssp EEEE--GGG
T ss_pred EEecchhhH
Confidence 43 455554
No 346
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.72 E-value=0.27 Score=52.16 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=31.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
.+||+|||+|..|.+.|..|++. | ++|+++++.+.
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~-G-----~~V~V~E~~~~ 361 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARN-G-----VAVTVYDRHPE 361 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEecCCC
Confidence 47999999999999999999998 8 99999998753
No 347
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=92.70 E-value=0.14 Score=49.49 Aligned_cols=33 Identities=30% Similarity=0.363 Sum_probs=30.6
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
.|.|||+|.-|+++|..|++. | ++|+++++.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~-G-----~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS-G-----LKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC-C-----CEEEEEeCCCc
Confidence 389999999999999999999 8 99999999874
No 348
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=92.69 E-value=0.15 Score=49.54 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=29.3
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.|+|||+|.+|.+.|..|++. | ++|+++++..
T Consensus 2 dvvIIGaGi~G~s~A~~La~~-g-----~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKH-G-----KKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccC
Confidence 589999999999999999999 8 8999999853
No 349
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.68 E-value=0.47 Score=46.54 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=30.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
-.+|+|+|+|-+|..-.+.+..- | .+|+.++|++++.+
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~-g-----a~Via~~~~~~K~e 204 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAM-G-----AEVIAITRSEEKLE 204 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-C-----CeEEEEeCChHHHH
Confidence 37999999998887666665545 7 89999999998764
No 350
>PRK08013 oxidoreductase; Provisional
Probab=92.67 E-value=0.15 Score=50.33 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=31.6
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
..|.|||+|..|.++|..|++. | ++|+++++.++
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~-G-----~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGS-G-----LRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhC-C-----CEEEEEeCCCC
Confidence 4799999999999999999999 8 99999999875
No 351
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.67 E-value=0.43 Score=49.36 Aligned_cols=38 Identities=18% Similarity=0.377 Sum_probs=32.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
..|++|+|+|.+|...+..+..- | ..|+++++++++.+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~l-G-----A~V~v~d~~~~rle 201 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSL-G-----AIVRAFDTRPEVKE 201 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 46999999999999999888777 7 78999999987543
No 352
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=92.59 E-value=1.4 Score=42.12 Aligned_cols=129 Identities=20% Similarity=0.204 Sum_probs=74.8
Q ss_pred ccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCccCCCHH
Q 019978 136 FCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPT 214 (333)
Q Consensus 136 ~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~-~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~s 214 (333)
-|+|.++.+-.++++++|-.||++++|++|+.+|-.. ...+++++.+.+++ +++|.. +=.++.. .+.
T Consensus 117 ~~ihf~~pEdaGvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipE---gAII~~-tCTIpt~--------~ly 184 (342)
T PRK00961 117 GCIHFVHPEDLGLKVTTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKE---GAIVTH-ACTIPTT--------KFA 184 (342)
T ss_pred cceeecCHHHcCceEecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCC---CCEEec-cccCCHH--------HHH
Confidence 3455555555688999888899999999999999876 68999999999987 665543 2223321 111
Q ss_pred HHHHhHhCCCCCcEEEEc-CCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEE-ecCChhHH
Q 019978 215 QMINRATGVPIENILYLG-GPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVW-DNGDLVTH 280 (333)
Q Consensus 215 e~i~~~lg~~~~~~~vl~-GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~-~s~Di~gv 280 (333)
..+++ +++.. +.+.+ -|.-. ....|+.....--.+++..+++.++-.+.+-..| .-.|+++.
T Consensus 185 ~~le~-l~R~D--vgIsS~HPaaV-Pgt~Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~PA~lvsp 248 (342)
T PRK00961 185 KIFKD-LGRDD--LNVTSYHPGAV-PEMKGQVYIAEGYADEEAVEKLYEIGKKARGNAFKMPANLIGP 248 (342)
T ss_pred HHHHH-hCccc--CCeeccCCCCC-CCCCCceecccccCCHHHHHHHHHHHHHhCCCeeecchhhcch
Confidence 22332 44321 22221 22211 0111222211123456788888888877654444 45677764
No 353
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=92.58 E-value=0.16 Score=49.88 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=30.6
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.+|.|||+|..|.++|..|++. | ++|+++++.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~-G-----~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQ-G-----RSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhC-C-----CcEEEEcCCC
Confidence 4899999999999999999999 8 9999999764
No 354
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=92.46 E-value=0.17 Score=47.73 Aligned_cols=35 Identities=29% Similarity=0.533 Sum_probs=31.6
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (333)
|+|.|.|+ |.+|..++..|++. | ++|++++|+++.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~-g-----~~V~~~~r~~~~ 36 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ-G-----EEVRVLVRPTSD 36 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC-C-----CEEEEEEecCcc
Confidence 58999996 99999999999999 8 899999998754
No 355
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.43 E-value=0.37 Score=46.08 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=28.1
Q ss_pred ceEEEECCCH-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 019978 44 LRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (333)
Q Consensus 44 ~kI~IIGaG~-mG~alA~~La~~~G~~~~~~~V~l~~r 80 (333)
++|+|+|+|. .|.+++..|.+. | ..|+++.|
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~-g-----atVtv~~~ 191 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNA-N-----ATVTICHS 191 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhC-C-----CEEEEEeC
Confidence 6999999997 999999999988 7 78988876
No 356
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=92.41 E-value=0.2 Score=51.07 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=32.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (333)
.++|+|||||.-|.+.|..|.+. | ++|+++.++.+.
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~-G-----~~v~vfE~~~~v 45 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRRE-G-----HTVVVFEREKQV 45 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhc-C-----CeEEEEecCCCC
Confidence 47999999999999999999999 8 899999987643
No 357
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.37 E-value=0.31 Score=51.60 Aligned_cols=55 Identities=24% Similarity=0.375 Sum_probs=40.7
Q ss_pred cchHHhhhHHHHhhccCC------CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 23 GSLEERLDELRRLMGKAE------GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~------~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
++|||-....-.-.++.. ...+||+|||+|..|.+.|..|++. | ++|++|++.+.
T Consensus 284 ~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~-G-----~~Vtv~e~~~~ 344 (639)
T PRK12809 284 GNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARA-G-----VQVDVFDRHPE 344 (639)
T ss_pred hHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHc-C-----CcEEEEeCCCC
Confidence 456665554443333321 1247999999999999999999998 8 99999998874
No 358
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=92.31 E-value=0.31 Score=46.58 Aligned_cols=66 Identities=15% Similarity=0.141 Sum_probs=45.8
Q ss_pred cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (333)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (333)
+|-++-.|-.-.==+..+++.. .....+++.|+|+|-.|.+++..|++. |. .++++++|+.+++++
T Consensus 101 ~g~l~G~NTD~~Gf~~~L~~~~--~~~~~k~vlilGaGGaarAi~~aL~~~-g~----~~i~i~nR~~~ka~~ 166 (283)
T PRK14027 101 TGHTTGHNTDVSGFGRGMEEGL--PNAKLDSVVQVGAGGVGNAVAYALVTH-GV----QKLQVADLDTSRAQA 166 (283)
T ss_pred CCcEEEEcCCHHHHHHHHHhcC--cCcCCCeEEEECCcHHHHHHHHHHHHC-CC----CEEEEEcCCHHHHHH
Confidence 5555555655444444554311 112246899999999999999999987 72 479999999876654
No 359
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=92.29 E-value=0.18 Score=50.03 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=31.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
++|.|||+|.-|++.|..|++. | ++|.++++...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~-G-----~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA-G-----IQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-C-----CcEEEEecCCC
Confidence 5899999999999999999999 8 99999998754
No 360
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=92.29 E-value=0.2 Score=46.07 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=32.9
Q ss_pred CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (333)
++|+|.|+|+ |.+|..++..|.++ | ++|+...|+++.
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~-g-----~~V~~~~R~~~~ 53 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAK-G-----FAVKAGVRDVDK 53 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhC-C-----CEEEEEecCHHH
Confidence 3589999996 99999999999998 8 999999998764
No 361
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=92.18 E-value=0.18 Score=49.25 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=31.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
...|.|||+|..|+++|..|++. | ++|+++++.+
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~-G-----~~V~liE~~~ 38 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQH-G-----FSVAVLEHAA 38 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcC-C-----CEEEEEcCCC
Confidence 36899999999999999999999 8 9999999875
No 362
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=92.12 E-value=0.24 Score=46.98 Aligned_cols=54 Identities=24% Similarity=0.255 Sum_probs=42.3
Q ss_pred HHhhhHHHHhhccCCC---CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978 26 EERLDELRRLMGKAEG---DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 26 ~~~~~~~~~~~~~~~~---~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (333)
.+|.+...+|+|...- ...+|.|+|+|.+|+..|..|++. |. .+++++|.+.-.
T Consensus 10 ~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~-GV----g~itLiD~D~V~ 66 (268)
T PRK15116 10 RQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALART-GI----GAITLIDMDDVC 66 (268)
T ss_pred HHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHc-CC----CEEEEEeCCEec
Confidence 4677777788874332 236899999999999999999999 83 479999987543
No 363
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=92.03 E-value=0.27 Score=52.09 Aligned_cols=52 Identities=25% Similarity=0.398 Sum_probs=38.2
Q ss_pred chHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978 24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (333)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (333)
....|.+.+..+.+........|.|||+|..|.++|..|+.. | .+|.+++++
T Consensus 52 ~~~~r~~~~~~~~~~~~~~~~DVvVIGGGi~Ga~~A~~lA~r-G-----l~V~LvE~~ 103 (627)
T PLN02464 52 SVPSRSAQESALIGATAAEPLDVLVVGGGATGAGVALDAATR-G-----LRVGLVERE 103 (627)
T ss_pred CCcChHHHHHHhhccccCCccCEEEECCCHHHHHHHHHHHhC-C-----CEEEEEecc
Confidence 334444444444322223446899999999999999999999 8 899999986
No 364
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=92.00 E-value=0.21 Score=49.12 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=31.7
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
.+|.|||+|.-|.++|..|++. | ++|+++++.+.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~-G-----~~v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLA-G-----IDSVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-C-----CCEEEEEcCCc
Confidence 5899999999999999999999 8 99999999874
No 365
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=91.94 E-value=0.57 Score=41.05 Aligned_cols=102 Identities=24% Similarity=0.344 Sum_probs=51.9
Q ss_pred hHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHH
Q 019978 25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVL 104 (333)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~ 104 (333)
+++..++++.+.......-.+|++.|||+=|.++...+--. . ..=..++|.++.+
T Consensus 50 ~~~~~~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~-~----~~I~~vvD~np~K-------------------- 104 (160)
T PF08484_consen 50 VEQSKAELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLD-N----DLIDYVVDDNPLK-------------------- 104 (160)
T ss_dssp HHHHHHHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT---T----TTS--EEES-GGG--------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCC-c----ceeEEEEeCChhh--------------------
Confidence 33344444444433333447899999999999998887543 2 0224577887643
Q ss_pred HHhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhh
Q 019978 105 RRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYW 184 (333)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l 184 (333)
.++|.|+.. + +|.....+. -...|+||+ .+..+.+++.+++..+.
T Consensus 105 -----~G~~~PGt~-------i--------------------pI~~p~~l~--~~~pd~viv-law~y~~EI~~~~~~~~ 149 (160)
T PF08484_consen 105 -----QGKYLPGTH-------I--------------------PIVSPEELK--ERKPDYVIV-LAWNYKDEIIEKLREYL 149 (160)
T ss_dssp -----TTEE-TTT-----------------------------EEEEGGG----SS--SEEEE-S-GGGHHHHHHHTHHHH
T ss_pred -----cCcccCCCC-------C--------------------eECCHHHHh--hCCCCEEEE-cChhhHHHHHHHHHHHH
Confidence 124666521 1 232222222 235788777 67889999999999888
Q ss_pred hc
Q 019978 185 KE 186 (333)
Q Consensus 185 ~~ 186 (333)
..
T Consensus 150 ~~ 151 (160)
T PF08484_consen 150 ER 151 (160)
T ss_dssp HT
T ss_pred hc
Confidence 76
No 366
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=91.88 E-value=0.19 Score=53.34 Aligned_cols=33 Identities=15% Similarity=0.274 Sum_probs=30.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
++|+|||+|.+|.+.|..|++. | ++|++++++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~-G-----~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARR-G-----WQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 5899999999999999999999 8 8999999874
No 367
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=91.87 E-value=0.41 Score=48.74 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=31.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
.++|+|||+|..|...|..|++. | ++|++|++.+.
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~-G-----~~V~i~e~~~~ 175 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARA-G-----VQVVVFDRHPE 175 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-C-----CeEEEEecCCC
Confidence 36899999999999999999998 8 99999988763
No 368
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=91.79 E-value=0.23 Score=50.30 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=30.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
+++|.|||+|..|+..|..|++. | ++|++++..+
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~-G-----l~V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKR-G-----VPVELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-C-----CcEEEEEccC
Confidence 36899999999999999999999 8 9999998644
No 369
>PLN02985 squalene monooxygenase
Probab=91.79 E-value=0.28 Score=50.72 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=31.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
..+|.|||+|..|.++|..|++. | ++|++++++..
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~-G-----~~V~vlEr~~~ 77 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKD-G-----RRVHVIERDLR 77 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHc-C-----CeEEEEECcCC
Confidence 45899999999999999999999 8 99999999753
No 370
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.79 E-value=0.4 Score=48.60 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=31.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
+||.|+|.|.-|.++|..|.+. | ++|+++|+++.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~-G-----~~V~~~D~~~~ 48 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKL-G-----AKVTAFDKKSE 48 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHC-C-----CEEEEECCCCC
Confidence 5899999999999999999999 8 99999998763
No 371
>PRK06126 hypothetical protein; Provisional
Probab=91.78 E-value=0.25 Score=50.97 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=32.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
..+|+|||+|..|.++|..|++. | ++|+++++.+.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~-G-----~~v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRR-G-----VDSILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 36899999999999999999999 8 99999998865
No 372
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=91.76 E-value=0.4 Score=48.74 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=31.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
.++|+|||+|..|.+.|..|++. | ++|+++++.+.
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~-G-----~~V~vie~~~~ 177 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARA-G-----HKVTVFERADR 177 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-C-----CcEEEEecCCC
Confidence 47999999999999999999998 8 99999998764
No 373
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=91.75 E-value=0.25 Score=51.05 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=32.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
..+|.|||+|..|.++|..|++. | ++|+++++.++
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~-G-----~~v~viE~~~~ 57 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQ-G-----VPVVLLDDDDT 57 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC-C-----CcEEEEeCCCC
Confidence 35899999999999999999998 8 99999998874
No 374
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=91.75 E-value=0.25 Score=51.35 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=29.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (333)
+||+|||||.-|.+.++.|.+. | ++|+++.++++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~-g-----~~~~~fE~~~~i 36 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE-G-----LEVTCFEKSDDI 36 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT-T------EEEEEESSSSS
T ss_pred CEEEEECccHHHHHHHHHHHHC-C-----CCCeEEecCCCC
Confidence 6999999999999999999998 8 999999998864
No 375
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=91.74 E-value=0.23 Score=48.13 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=29.5
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.|+|||+|.+|.+.|..|++. | ++|+++++..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~-G-----~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR-G-----LSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence 589999999999999999999 8 8999999865
No 376
>PTZ00367 squalene epoxidase; Provisional
Probab=91.70 E-value=0.29 Score=51.21 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=31.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
..+|.|||+|..|.++|..|++. | ++|.++.|++
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~-G-----~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQ-G-----RKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhc-C-----CEEEEEcccc
Confidence 36899999999999999999999 8 9999999976
No 377
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=91.62 E-value=0.76 Score=39.36 Aligned_cols=36 Identities=33% Similarity=0.510 Sum_probs=25.4
Q ss_pred CHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEe
Q 019978 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (333)
Q Consensus 153 d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~ 196 (333)
+++++++.||+|+.++....+ ++ ..++++ +++++.+
T Consensus 64 ~l~~~v~~ADIVvsAtg~~~~---i~--~~~ikp---Ga~Vidv 99 (140)
T cd05212 64 QLQSKVHDADVVVVGSPKPEK---VP--TEWIKP---GATVINC 99 (140)
T ss_pred CHHHHHhhCCEEEEecCCCCc---cC--HHHcCC---CCEEEEc
Confidence 566778999999999987643 22 245666 7777754
No 378
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=91.61 E-value=2.3 Score=40.76 Aligned_cols=127 Identities=17% Similarity=0.186 Sum_probs=74.2
Q ss_pred cccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCccCCCHHH
Q 019978 137 CLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQ 215 (333)
Q Consensus 137 ~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~-~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se 215 (333)
++|.++.+-.++++++|-.||++++|++|+.+|-.. ...+++++.+.+++ +++|.. +=.++.. .+..
T Consensus 116 ~ihf~~pEdaGvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpE---gAII~~-tCTIpt~--------~ly~ 183 (340)
T TIGR01723 116 AIHFVHPEDLGLKVTTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPE---GAIVTH-ACTIPTT--------KFAK 183 (340)
T ss_pred eeeecCHHHcCceEecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCC---CCEEec-cccCChH--------HHHH
Confidence 455555555688999888899999999999999876 68999999999987 665543 2222221 1112
Q ss_pred HHHhHhCCCCCcEEEE-cCCCchHHHhccCceeEE-EeCChhhHHHHHHHhCCCCeEEE-ecCChhHH
Q 019978 216 MINRATGVPIENILYL-GGPNIASEIYNKEYANAR-ICGAEKWRKPLAKFLRRPHFTVW-DNGDLVTH 280 (333)
Q Consensus 216 ~i~~~lg~~~~~~~vl-~GP~~a~ev~~~~~~~~~-~~~~~~~~~~l~~ll~~~~~~v~-~s~Di~gv 280 (333)
.++. +++. .+.+. .-|.-.-+ ..+ ..++. --.+++..+++.++-.+.+-..| .-.|+++.
T Consensus 184 ilE~-l~R~--DvgVsS~HPaaVPg-t~~-q~Yi~egyAtEEqI~klveL~~sa~k~ay~~PA~Lvsp 246 (340)
T TIGR01723 184 IFED-LGRE--DLNVTSYHPGCVPE-MKG-QVYIAEGYASEEAVNKLYELGKKARGKAFKMPANLLGP 246 (340)
T ss_pred HHHh-hCcc--cCCeeccCCCCCCC-CCC-ceEeecccCCHHHHHHHHHHHHHhCCCeeecchhhccc
Confidence 2222 4432 12222 22322111 111 11211 13456788888888887654444 45666663
No 379
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=91.61 E-value=0.29 Score=49.68 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=31.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
.+.|.|||+|.-|++.|..|++. | ++|.++++..+
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~-G-----~~VlllEr~~~ 73 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKG-G-----IETFLIERKLD 73 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCC
Confidence 46899999999999999999999 8 99999998753
No 380
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=91.59 E-value=0.32 Score=47.27 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=32.6
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
..++|+|||+|..|...|..|++. | ++|+++++.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~~ 52 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACL-G-----YEVHVYDKLPE 52 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 457999999999999999999998 8 99999998765
No 381
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=91.54 E-value=0.71 Score=45.03 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=34.1
Q ss_pred CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (333)
..++|.|-|| |.+|+.+...|..+ | |.|+...|+++.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~r-G-----Y~V~gtVR~~~~ 42 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSR-G-----YTVRGTVRDPED 42 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhC-C-----CEEEEEEcCcch
Confidence 4589999997 99999999999999 9 999999999875
No 382
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=91.50 E-value=0.22 Score=49.16 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=29.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (333)
..|+|||+|..|.++|..|++. | ++|+++++.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~-G-----~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKES-D-----LRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhC-C-----CEEEEEcCC
Confidence 4799999999999999999998 8 999999985
No 383
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=91.49 E-value=0.3 Score=51.90 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=32.4
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
..+||+|||+|..|...|..|++. | ++|+++++.+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~-G-----~~Vtv~e~~~~ 227 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK-G-----HDVTIFDANEQ 227 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 347999999999999999999998 8 99999998764
No 384
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=91.48 E-value=0.26 Score=54.60 Aligned_cols=40 Identities=20% Similarity=0.185 Sum_probs=34.5
Q ss_pred ccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 37 GKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 37 ~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
++.....+||+|||+|.-|.+-|..|++. | |+|+++++.+
T Consensus 300 ~~~~~~gkkVaVIGsGPAGLsaA~~Lar~-G-----~~VtVfE~~~ 339 (944)
T PRK12779 300 PWAAAVKPPIAVVGSGPSGLINAYLLAVE-G-----FPVTVFEAFH 339 (944)
T ss_pred ccccCCCCeEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeeCC
Confidence 44344468999999999999999999999 8 9999999875
No 385
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=91.43 E-value=0.21 Score=49.24 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=30.1
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.|+|||+|..|.++|..|++. | ++|+++++.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~-G-----~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGS-G-----LEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcC-C-----CEEEEEcCCC
Confidence 699999999999999999998 8 9999999875
No 386
>PRK07877 hypothetical protein; Provisional
Probab=91.42 E-value=0.67 Score=49.93 Aligned_cols=34 Identities=26% Similarity=0.232 Sum_probs=28.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.||+|+|+| +|+..|..|+.. |.+ -+++++|.+.
T Consensus 108 ~~V~IvG~G-lGs~~a~~Lara-Gvv---G~l~lvD~D~ 141 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAE-GLC---GELRLADFDT 141 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHc-cCC---CeEEEEcCCE
Confidence 699999999 999999999998 710 2688888775
No 387
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=91.37 E-value=0.92 Score=42.77 Aligned_cols=47 Identities=26% Similarity=0.289 Sum_probs=35.4
Q ss_pred cCHHHHhc--CCCEEEEec--CchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978 152 TNLQEAVW--DADIVINGL--PSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (333)
Q Consensus 152 ~d~~ea~~--~aDlIIlaV--ps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~ 202 (333)
.++.|+++ ++|++|=.. |--+.+++++.+..+.+ +++|..++|-.+.
T Consensus 96 ~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~----~PIIFaLSNPt~~ 146 (254)
T cd00762 96 GDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINE----RPVIFALSNPTSK 146 (254)
T ss_pred CCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCC----CCEEEECCCcCCc
Confidence 68999999 899877533 44589999999988754 4677778876553
No 388
>PRK09126 hypothetical protein; Provisional
Probab=91.36 E-value=0.25 Score=48.30 Aligned_cols=34 Identities=35% Similarity=0.432 Sum_probs=31.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
.+|.|||+|.-|.++|..|++. | ++|+++++.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGS-G-----LKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhC-C-----CcEEEEeCCCc
Confidence 4799999999999999999999 8 99999999764
No 389
>PRK00536 speE spermidine synthase; Provisional
Probab=91.36 E-value=1.5 Score=41.60 Aligned_cols=101 Identities=11% Similarity=0.060 Sum_probs=60.3
Q ss_pred CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (333)
Q Consensus 41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (333)
.+++||.|||+|--|+ ++-+.+. . .+|++++.|++.++.. + .|+|.+.+.
T Consensus 71 ~~pk~VLIiGGGDGg~--~REvLkh-~-----~~v~mVeID~~Vv~~~-k---------------------~~lP~~~~~ 120 (262)
T PRK00536 71 KELKEVLIVDGFDLEL--AHQLFKY-D-----THVDFVQADEKILDSF-I---------------------SFFPHFHEV 120 (262)
T ss_pred CCCCeEEEEcCCchHH--HHHHHCc-C-----CeeEEEECCHHHHHHH-H---------------------HHCHHHHHh
Confidence 3467999999999554 3445454 2 4899999999765421 1 245543321
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHH-hcCCCEEEEe-cCchhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVING-LPSTETKEVFEEISRYWKERITVPVIISLAK 198 (333)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea-~~~aDlIIla-Vps~~~~~vl~~i~~~l~~~~~~~~Ivs~~k 198 (333)
+.+ ++++......+. -+..|+||+= +++ ++..+.+++.+++ +.+ +.++.
T Consensus 121 ~~D----------------------pRv~l~~~~~~~~~~~fDVIIvDs~~~---~~fy~~~~~~L~~---~Gi-~v~Qs 171 (262)
T PRK00536 121 KNN----------------------KNFTHAKQLLDLDIKKYDLIICLQEPD---IHKIDGLKRMLKE---DGV-FISVA 171 (262)
T ss_pred hcC----------------------CCEEEeehhhhccCCcCCEEEEcCCCC---hHHHHHHHHhcCC---CcE-EEECC
Confidence 211 245544444332 2578999986 444 5566777777877 554 44565
Q ss_pred cC
Q 019978 199 GV 200 (333)
Q Consensus 199 Gi 200 (333)
|-
T Consensus 172 ~s 173 (262)
T PRK00536 172 KH 173 (262)
T ss_pred CC
Confidence 53
No 390
>PRK08374 homoserine dehydrogenase; Provisional
Probab=91.33 E-value=1.3 Score=43.35 Aligned_cols=43 Identities=28% Similarity=0.231 Sum_probs=29.3
Q ss_pred CHHHHh--cCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978 153 NLQEAV--WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (333)
Q Consensus 153 d~~ea~--~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~ 201 (333)
++++.+ .++|+||-++.+....++..+ .+.. +..||+.+||..
T Consensus 82 ~~~ell~~~~~DVvVd~t~~~~a~~~~~~---al~~---G~~VVtanK~~l 126 (336)
T PRK08374 82 SPEEIVEEIDADIVVDVTNDKNAHEWHLE---ALKE---GKSVVTSNKPPI 126 (336)
T ss_pred CHHHHHhcCCCCEEEECCCcHHHHHHHHH---HHhh---CCcEEECCHHHH
Confidence 555655 378999999987655555444 3444 678888888743
No 391
>PLN02852 ferredoxin-NADP+ reductase
Probab=91.32 E-value=0.34 Score=49.87 Aligned_cols=38 Identities=26% Similarity=0.380 Sum_probs=32.6
Q ss_pred CCCceEEEECCCHHHHHHHHHHHH--hcCCCCCCeeEEEEecCCcc
Q 019978 41 GDPLRIVGVGAGAWGSVFTAMLQD--SYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 41 ~~~~kI~IIGaG~mG~alA~~La~--~~G~~~~~~~V~l~~r~~~~ 84 (333)
...+||+|||+|.-|.+.|..|++ . | ++|++|++.+.-
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~-g-----~~Vtv~E~~p~p 63 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHD-G-----ARVDIIERLPTP 63 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCC-C-----CeEEEEecCCCC
Confidence 345799999999999999999986 5 6 999999998743
No 392
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=91.32 E-value=0.27 Score=47.88 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=31.5
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
.+|.|||+|.-|.++|..|++. | .+|+++++.+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQS-G-----LRVALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhC-C-----CeEEEEecCCC
Confidence 4799999999999999999998 8 89999998875
No 393
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=91.30 E-value=0.32 Score=44.38 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=32.7
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
|+|.|.|+ |.+|.+++..|++. | ++|.+.+|+++.++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 38 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ-G-----HKVIATGRRQERLQ 38 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 68999996 99999999999998 8 89999999876543
No 394
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=91.17 E-value=0.32 Score=45.60 Aligned_cols=40 Identities=28% Similarity=0.342 Sum_probs=30.6
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCC----C--CCCeeEEEEecCC
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGY----L--RDKVLIRIWRRPG 82 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~----~--~~~~~V~l~~r~~ 82 (333)
+..||.|||+|..|+.++..|++. |. + ..+.+++++|.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~-G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARL-HHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHc-cccccccCCCCCCEEEEECCCE
Confidence 457999999999999999999986 41 0 0013788888775
No 395
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=91.03 E-value=0.79 Score=43.93 Aligned_cols=45 Identities=16% Similarity=0.335 Sum_probs=32.8
Q ss_pred HhhccCCCCCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 34 RLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 34 ~~~~~~~~~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
+.+..-..+..||+|+|| |-+|..|+..|..+ -.+ -+..|||...
T Consensus 19 ~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~n-p~V---s~LaLYDi~~ 64 (345)
T KOG1494|consen 19 RVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLN-PLV---SELALYDIAN 64 (345)
T ss_pred ccccccccCcceEEEEecCCccCccHHHHHhcC-ccc---ceeeeeeccc
Confidence 334444556789999996 99999999999877 211 2567888764
No 396
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.00 E-value=0.92 Score=43.49 Aligned_cols=31 Identities=29% Similarity=0.357 Sum_probs=25.7
Q ss_pred ceEEEECCCH-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 019978 44 LRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (333)
Q Consensus 44 ~kI~IIGaG~-mG~alA~~La~~~G~~~~~~~V~l~~r 80 (333)
++|+|||-|. +|..+|..|.+. | ..|+++.+
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~-~-----atVtv~hs 191 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLA-G-----CTVTVCHR 191 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHC-C-----CeEEEEEC
Confidence 6899999877 999999999877 6 77877743
No 397
>PRK05884 short chain dehydrogenase; Provisional
Probab=90.90 E-value=0.32 Score=43.97 Aligned_cols=37 Identities=8% Similarity=0.239 Sum_probs=32.5
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
||+.|.|+ |.+|.+++..|++. | ++|++.+|+++.++
T Consensus 1 m~vlItGas~giG~~ia~~l~~~-g-----~~v~~~~r~~~~~~ 38 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRND-G-----HKVTLVGARRDDLE 38 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 58999997 99999999999999 8 99999999876543
No 398
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=90.90 E-value=0.46 Score=49.33 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=48.0
Q ss_pred hhhhhhccCccccccccccchHHhhhHHHHhhcc--------CCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE
Q 019978 5 NEVVNDSLSSNGLIHHTNGSLEERLDELRRLMGK--------AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR 76 (333)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~ 76 (333)
|-|+++. .+|-++-.|-.-.-=+..+++..+. .....+++.|+|+|.+|.+++..|++. | .+|+
T Consensus 335 NTvv~~~--~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~-G-----~~V~ 406 (529)
T PLN02520 335 NTIIRRP--SDGKLVGYNTDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEK-G-----ARVV 406 (529)
T ss_pred eEEEEeC--CCCEEEEEcccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHC-C-----CEEE
Confidence 4455432 2555555565444444444432110 011236899999999999999999998 8 7899
Q ss_pred EEecCCcchh
Q 019978 77 IWRRPGRSVD 86 (333)
Q Consensus 77 l~~r~~~~~~ 86 (333)
+++|+.++++
T Consensus 407 i~nR~~e~a~ 416 (529)
T PLN02520 407 IANRTYERAK 416 (529)
T ss_pred EEcCCHHHHH
Confidence 9999876554
No 399
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=90.87 E-value=0.35 Score=48.90 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=32.5
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
..++|+|||+|.-|.+.|..|++. | ++|+++++.+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~-g-----~~V~lie~~~~ 174 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARK-G-----YDVTIFEARDK 174 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEccCCC
Confidence 457999999999999999999998 8 99999998754
No 400
>PLN00016 RNA-binding protein; Provisional
Probab=90.84 E-value=0.27 Score=48.31 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=33.4
Q ss_pred CCCceEEEE----CC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978 41 GDPLRIVGV----GA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 41 ~~~~kI~II----Ga-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (333)
..++||.|+ |+ |.+|+.++..|.++ | |+|++.+|+++.
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~-G-----~~V~~l~R~~~~ 92 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKA-G-----HEVTLFTRGKEP 92 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHC-C-----CEEEEEecCCcc
Confidence 445799999 75 99999999999999 8 999999998754
No 401
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=90.81 E-value=0.36 Score=44.31 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=32.7
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
|++.|.|+ |.+|.++|..|++. | ++|.+.+|+++.++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~-G-----~~V~~~~r~~~~~~ 38 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKK-G-----ARVVISSRNEENLE 38 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHc-C-----CEEEEEeCCHHHHH
Confidence 68999996 88999999999999 8 89999999876543
No 402
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.77 E-value=0.36 Score=49.50 Aligned_cols=36 Identities=11% Similarity=0.236 Sum_probs=32.2
Q ss_pred CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.....|.|||+|..|.++|..|++. | .+|.++.+..
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~r-G-----~~V~LlEk~d 39 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGR-G-----LKVLLCEKDD 39 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECCC
Confidence 3446899999999999999999999 8 8999999873
No 403
>PRK07454 short chain dehydrogenase; Provisional
Probab=90.74 E-value=0.45 Score=42.94 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=33.1
Q ss_pred CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (333)
Q Consensus 42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (333)
.++++.|.|+ |.+|..++..|++. | ++|++.+|+++..
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~ 43 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKA-G-----WDLALVARSQDAL 43 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHHH
Confidence 4568999996 99999999999999 8 8999999987644
No 404
>PRK08267 short chain dehydrogenase; Provisional
Probab=90.73 E-value=0.39 Score=43.94 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=33.0
Q ss_pred CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
|+++.|.|+ |.+|.+++..|++. | ++|.+++|+++..+
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 39 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAE-G-----WRVGAYDINEAGLA 39 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC-C-----CeEEEEeCCHHHHH
Confidence 357999996 99999999999999 8 89999999886554
No 405
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=90.72 E-value=1.1 Score=46.31 Aligned_cols=39 Identities=18% Similarity=0.381 Sum_probs=33.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (333)
..||+|+|+|.+|...+..+... | .+|+.+|+++++.+.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~l-G-----A~V~a~D~~~~rle~ 203 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSL-G-----AIVRAFDTRPEVAEQ 203 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 57999999999999888887766 8 789999999876543
No 406
>PRK07102 short chain dehydrogenase; Provisional
Probab=90.66 E-value=0.39 Score=43.47 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=33.2
Q ss_pred CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
|++|.|.|+ |.+|.+++..|++. | ++|++.+|+++..+
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~-G-----~~Vi~~~r~~~~~~ 39 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAA-G-----ARLYLAARDVERLE 39 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhc-C-----CEEEEEeCCHHHHH
Confidence 468999995 99999999999999 8 89999999886543
No 407
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=90.66 E-value=0.31 Score=49.94 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=31.7
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
|||+|+|+|--|.+-|..|++. | ++|++|.++..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~-g-----~~vt~~ea~~~ 34 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA-G-----YDVTLYEARDR 34 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC-C-----CceEEEeccCc
Confidence 7999999999999999999999 8 99999988763
No 408
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=90.65 E-value=0.36 Score=44.53 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=30.4
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
.|.|||+|..|.++|..|++. | .+|.++++...
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~-g-----~~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADK-G-----LRVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccCC
Confidence 589999999999999999998 8 89999999864
No 409
>PRK07023 short chain dehydrogenase; Provisional
Probab=90.59 E-value=0.38 Score=43.54 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=31.6
Q ss_pred CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
||+|.|.|+ |.+|..++..|++. | ++|.+.+|+.+
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~-G-----~~v~~~~r~~~ 36 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQP-G-----IAVLGVARSRH 36 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhC-C-----CEEEEEecCcc
Confidence 579999997 99999999999998 8 89999999864
No 410
>PRK08244 hypothetical protein; Provisional
Probab=90.59 E-value=0.32 Score=49.49 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=31.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (333)
..|.|||+|..|.++|..|++. | ++|+++++.++.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~-G-----~~v~viEr~~~~ 37 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALA-G-----VKTCVIERLKET 37 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCCC
Confidence 4799999999999999999999 8 999999997653
No 411
>PRK08177 short chain dehydrogenase; Provisional
Probab=90.55 E-value=0.49 Score=42.41 Aligned_cols=38 Identities=16% Similarity=0.088 Sum_probs=32.9
Q ss_pred CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
|+++.|.|+ |.+|.+++..|++. | ++|.+++|+++..+
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 39 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLER-G-----WQVTATVRGPQQDT 39 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhC-C-----CEEEEEeCCCcchH
Confidence 357899995 99999999999999 8 89999999986543
No 412
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=90.52 E-value=1.5 Score=42.86 Aligned_cols=39 Identities=23% Similarity=0.186 Sum_probs=29.3
Q ss_pred hcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978 158 VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (333)
Q Consensus 158 ~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~ 202 (333)
.+++|++|.|.+...-+++..+++. . +.++|+.+.-+-.
T Consensus 64 ~~~~Divf~~ag~~~s~~~~p~~~~---~---G~~VIdnsSa~Rm 102 (334)
T COG0136 64 FSDVDIVFFAAGGSVSKEVEPKAAE---A---GCVVIDNSSAFRM 102 (334)
T ss_pred cccCCEEEEeCchHHHHHHHHHHHH---c---CCEEEeCCccccc
Confidence 5589999999998888888877764 2 6788877654443
No 413
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=90.47 E-value=0.35 Score=49.91 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=32.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
..+|+|||+|..|.++|..|++. | ++|+++++.++
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~-G-----~~v~v~Er~~~ 44 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQY-G-----VRVLVLERWPT 44 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 46899999999999999999998 8 99999999875
No 414
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.45 E-value=0.51 Score=43.78 Aligned_cols=34 Identities=24% Similarity=0.181 Sum_probs=30.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.||.|+|+|.+|+.++..|++. |. .+++++|.+.
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~-GV----g~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARS-GV----GKLTLIDFDV 45 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHc-CC----CEEEEECCCE
Confidence 6999999999999999999999 82 4788998875
No 415
>PRK06184 hypothetical protein; Provisional
Probab=90.43 E-value=0.38 Score=49.15 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=32.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (333)
..|.|||+|..|.++|..|++. | ++|+++++.++.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~-G-----i~v~viE~~~~~ 38 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARR-G-----VSFRLIEKAPEP 38 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeCCCCC
Confidence 5799999999999999999999 8 999999997654
No 416
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=90.37 E-value=0.35 Score=51.64 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=31.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
+.+|.|||+|.-|.++|..|++. | ++|++|.|.+
T Consensus 81 ~~~VlIVGgGIaGLalAlaL~r~-G-----i~V~V~Er~~ 114 (668)
T PLN02927 81 KSRVLVAGGGIGGLVFALAAKKK-G-----FDVLVFEKDL 114 (668)
T ss_pred CCCEEEECCCHHHHHHHHHHHhc-C-----CeEEEEeccc
Confidence 47999999999999999999999 8 9999999975
No 417
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.37 E-value=0.31 Score=49.57 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=32.5
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (333)
.++|+|||||+-|.+.|..|.+. | ++|+++.|+.+.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~-g-----~~v~vfEr~~~i 41 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE-G-----HEVVVFERTDDI 41 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC-C-----CCceEEEecCCc
Confidence 47999999999999999999998 8 999999888764
No 418
>PTZ00188 adrenodoxin reductase; Provisional
Probab=90.33 E-value=0.52 Score=48.58 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=30.8
Q ss_pred CCceEEEECCCHHHHHHHHHHH-HhcCCCCCCeeEEEEecCCc
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La-~~~G~~~~~~~V~l~~r~~~ 83 (333)
.++||+|||+|.-|.+.|..|+ +. | ++|++|.+.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~-g-----~~VtlfEk~p~ 74 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHE-R-----VKVDIFEKLPN 74 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhc-C-----CeEEEEecCCC
Confidence 4579999999999999999765 45 6 89999999874
No 419
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.26 E-value=0.58 Score=47.93 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=30.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
++|.|+|+|..|.+.+..|... | .+|+++|++++
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~-G-----~~v~~~D~~~~ 46 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRF-G-----ARPTVCDDDPD 46 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHC-C-----CEEEEEcCCHH
Confidence 6899999999999999988888 8 89999997653
No 420
>PRK08017 oxidoreductase; Provisional
Probab=90.23 E-value=0.44 Score=43.26 Aligned_cols=37 Identities=16% Similarity=0.096 Sum_probs=32.5
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
++|.|.|+ |.+|.+++..|++. | ++|.+++|+++..+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~-g-----~~v~~~~r~~~~~~ 40 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRR-G-----YRVLAACRKPDDVA 40 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEeCCHHHhH
Confidence 47999998 99999999999998 8 89999999876543
No 421
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=90.22 E-value=0.43 Score=46.98 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=29.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
..|+|||+|.+|.++|..|++.+ ++++|+++++..
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~----~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERY----PGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhC----CCCeEEEEeCCC
Confidence 47999999999999999999752 128999999975
No 422
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=90.17 E-value=0.67 Score=46.85 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=31.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.++|+|||+|.-|.+.|..|++. | ++|+++++.+
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~-G-----~~V~vie~~~ 166 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKA-G-----HSVTVFEALH 166 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-C-----CcEEEEecCC
Confidence 47999999999999999999998 8 9999999865
No 423
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=90.14 E-value=0.45 Score=49.07 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=30.0
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
....|+|||+|.||+++|..|++..+ ..+|.++++..
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~~----~~~V~VlEk~~ 80 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFTN----LKKIALIERRS 80 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhCC----CCEEEEEecCc
Confidence 34689999999999999999998512 15899998864
No 424
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=90.00 E-value=0.38 Score=48.76 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=30.4
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
+|+|||+|-.|+..|..|++. | ++|+++.+.+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~-G-----~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQA-G-----VPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecccc
Confidence 799999999999999999999 8 99999987654
No 425
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=89.95 E-value=0.42 Score=44.34 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=29.4
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
+|+|||+|.-|.+.|..|++. | ++|+++++..
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARA-N-----LKTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeccC
Confidence 689999999999999999998 8 8999999764
No 426
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=89.92 E-value=1.5 Score=43.43 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=28.9
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHhhhhccCCC--CEEEEeeecCcc
Q 019978 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITV--PVIISLAKGVEA 202 (333)
Q Consensus 157 a~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~--~~Ivs~~kGi~~ 202 (333)
...+.|++|+|.++...+++...++. . + +++|+.+.-+-.
T Consensus 61 ~~~~vDivffa~g~~~s~~~~p~~~~---a---G~~~~VIDnSSa~Rm 102 (366)
T TIGR01745 61 ALKALDIIITCQGGDYTNEIYPKLRE---S---GWQGYWIDAASSLRM 102 (366)
T ss_pred cccCCCEEEEcCCHHHHHHHHHHHHh---C---CCCeEEEECChhhhc
Confidence 46789999999999877777776654 2 4 567777655443
No 427
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.89 E-value=1.7 Score=42.46 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=29.9
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
+|+|+|+|.+|...+..+... |. .+|++.++++++++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~-Ga----~~Viv~d~~~~Rl~ 207 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLL-GA----SVVIVVDRSPERLE 207 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CC----ceEEEeCCCHHHHH
Confidence 899999999999987666665 62 57888899887664
No 428
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=89.88 E-value=3.8 Score=39.09 Aligned_cols=70 Identities=13% Similarity=0.104 Sum_probs=42.6
Q ss_pred ecCHHHHhcC-CC-EEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCcE
Q 019978 151 VTNLQEAVWD-AD-IVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228 (333)
Q Consensus 151 t~d~~ea~~~-aD-lIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~ 228 (333)
.+++++.++. +| ++|=.+.+..+.+.++.... . +..+|.-|.|+..+. ..+ +.+.- .+
T Consensus 58 ~~~l~~~~~~~~d~VvIDFT~P~~~~~n~~~~~~---~---gv~~ViGTTG~~~~~--------~~~-l~~~~-----~i 117 (275)
T TIGR02130 58 EARIGEVFAKYPELICIDYTHPSAVNDNAAFYGK---H---GIPFVMGTTGGDREA--------LAK-LVADA-----KH 117 (275)
T ss_pred cccHHHHHhhcCCEEEEECCChHHHHHHHHHHHH---C---CCCEEEcCCCCCHHH--------HHH-HHHhc-----CC
Confidence 5778777766 89 77777777666666554433 2 456777777887652 112 22211 14
Q ss_pred EEEcCCCchHHH
Q 019978 229 LYLGGPNIASEI 240 (333)
Q Consensus 229 ~vl~GP~~a~ev 240 (333)
.++..||+..-+
T Consensus 118 ~~l~apNfSiGv 129 (275)
T TIGR02130 118 PAVIAPNMAKQI 129 (275)
T ss_pred CEEEECcccHHH
Confidence 578889987543
No 429
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=89.80 E-value=0.49 Score=49.14 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=30.4
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
..|+|||+|..|.++|..|++. | .+|.+++++.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~r-G-----~~V~LlEk~d 39 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALR-G-----LRCILVERHD 39 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHc-C-----CeEEEEECCC
Confidence 5799999999999999999999 8 8999999853
No 430
>PRK11445 putative oxidoreductase; Provisional
Probab=89.78 E-value=0.43 Score=46.42 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=30.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
+..|+|||+|.-|+++|..|++. ++|+++++.++
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-------~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-------MKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-------CCEEEEECCCc
Confidence 35899999999999999999876 68999998864
No 431
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=89.75 E-value=0.47 Score=45.73 Aligned_cols=36 Identities=8% Similarity=0.056 Sum_probs=30.3
Q ss_pred CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
||||.|.|+ |.+|+.++..|.++.| ++|+.++|+.+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~-----~~V~~~~r~~~ 37 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTD-----WEVYGMDMQTD 37 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCC-----CeEEEEeCcHH
Confidence 479999997 9999999999987414 89999998654
No 432
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=89.71 E-value=0.5 Score=46.60 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=28.2
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCC
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPG 82 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~ 82 (333)
.|+|||+|.+|++.|..|++..| . +|++++++.
T Consensus 32 dvvIIGgGi~G~s~A~~L~~~~g-----~~~V~vle~~~ 65 (407)
T TIGR01373 32 DVIIVGGGGHGLATAYYLAKEHG-----ITNVAVLEKGW 65 (407)
T ss_pred CEEEECCcHHHHHHHHHHHHhcC-----CCeEEEEEccc
Confidence 69999999999999999998315 4 899998863
No 433
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=89.68 E-value=0.82 Score=43.97 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=28.6
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
||.|||+|..|+.++..|+.. |. -+++++|.+.
T Consensus 1 kVlVVGaGGlG~eilknLal~-Gv----g~I~IvD~D~ 33 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-GF----RNIHVIDMDT 33 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CC----CeEEEECCCE
Confidence 689999999999999999998 82 4688888765
No 434
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=89.67 E-value=0.48 Score=46.51 Aligned_cols=35 Identities=29% Similarity=0.246 Sum_probs=31.7
Q ss_pred CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
..|||.|.|+ |.+|+.++..|.+. | |+|+.++|..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~-G-----~~V~~v~r~~ 55 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAE-G-----HYIIASDWKK 55 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhC-C-----CEEEEEEecc
Confidence 4589999997 99999999999998 8 9999999864
No 435
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=89.64 E-value=0.41 Score=50.73 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=32.4
Q ss_pred CceEEEECCCHHHHHHHHHHHH-hcCCCCCCeeEEEEecCCcc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQD-SYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~-~~G~~~~~~~V~l~~r~~~~ 84 (333)
..+|.|||||..|.++|..|++ . | .+|+++++.++.
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~-G-----i~v~IiE~~~~~ 68 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFP-D-----ITTRIVERKPGR 68 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCC-C-----CcEEEEEcCCCC
Confidence 5789999999999999999998 6 7 899999988753
No 436
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=89.64 E-value=3.2 Score=39.77 Aligned_cols=92 Identities=17% Similarity=0.212 Sum_probs=63.1
Q ss_pred CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (333)
Q Consensus 43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (333)
..||.|.|. |..|+.+-..+... | .+ .+|..++.+-. ...
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~-g-----~~-~v~~V~p~~~~-------------------------~~v------- 46 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAY-G-----TN-IVGGVTPGKGG-------------------------TTV------- 46 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhC-C-----CC-EEEEECCCCCc-------------------------cee-------
Confidence 358999995 99999999998776 7 66 66666663100 001
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (333)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~--aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG 199 (333)
..+.+..+.++.-+. .|+.++++|+..+.+++++.... + -..++.++.|
T Consensus 47 ------------------------~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~l~e~~~~---G--vk~avIis~G 97 (286)
T TIGR01019 47 ------------------------LGLPVFDSVKEAVEETGANASVIFVPAPFAADAIFEAIDA---G--IELIVCITEG 97 (286)
T ss_pred ------------------------cCeeccCCHHHHhhccCCCEEEEecCHHHHHHHHHHHHHC---C--CCEEEEECCC
Confidence 123444555554444 79999999999999999997752 1 2355667888
Q ss_pred Ccc
Q 019978 200 VEA 202 (333)
Q Consensus 200 i~~ 202 (333)
+..
T Consensus 98 f~e 100 (286)
T TIGR01019 98 IPV 100 (286)
T ss_pred CCH
Confidence 864
No 437
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.63 E-value=0.58 Score=42.19 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=32.9
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
++|.|+|+ |.+|..++..|++. | ++|++.+|+++..+
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~-G-----~~V~~~~r~~~~~~ 43 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAE-G-----ARVVVTDRNEEAAE 43 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 68999997 99999999999999 8 89999999986543
No 438
>PLN03075 nicotianamine synthase; Provisional
Probab=89.58 E-value=3.3 Score=39.96 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=29.0
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
.+.+|+.||+|..|..-...++.. . ++-.++-+|++++.++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~-~---p~~~~~giD~d~~ai~ 163 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHH-L---PTTSFHNFDIDPSAND 163 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhc-C---CCCEEEEEeCCHHHHH
Confidence 668999999999877655544433 1 1146889999987654
No 439
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=89.58 E-value=0.53 Score=48.42 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=30.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (333)
...|.|||+|..|.++|..+++. | .+|.++.++
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~r-G-----l~V~LvEk~ 38 (508)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAGR-G-----LSVLLCEQD 38 (508)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC-C-----CeEEEEecC
Confidence 35799999999999999999999 8 899999986
No 440
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=89.50 E-value=0.88 Score=46.56 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=31.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
++|+|||+|..|...|..|++. | ++|+++++.+.
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~-g-----~~V~v~e~~~~ 177 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRA-G-----HTVTVFEREDR 177 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-C-----CeEEEEecCCC
Confidence 7999999999999999999998 8 89999988653
No 441
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=89.48 E-value=0.51 Score=46.97 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=29.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
++|+|||+|..|.++|..|++. | .+|.+++++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~-G-----~~V~viEk~~ 34 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL-N-----KRVLVVEKRN 34 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEecCC
Confidence 5799999999999999999988 7 8999998754
No 442
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=89.48 E-value=0.41 Score=48.00 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=28.6
Q ss_pred eEEEECCCHHHHHHHHHHHH----hcCCCCCCeeEEEEecC
Q 019978 45 RIVGVGAGAWGSVFTAMLQD----SYGYLRDKVLIRIWRRP 81 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~----~~G~~~~~~~V~l~~r~ 81 (333)
.|.|||+|..|.++|..|++ . | ++|+++++.
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~-G-----~~v~viE~~ 36 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTK-D-----LKVLLLDAV 36 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccC-C-----CeEEEEeCC
Confidence 58999999999999999998 6 7 999999984
No 443
>PRK12831 putative oxidoreductase; Provisional
Probab=89.31 E-value=0.62 Score=47.43 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=31.6
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
..++|+|||+|.-|.+.|..|++. | ++|+++++.+
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-G-----~~V~v~e~~~ 173 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-G-----YDVTIFEALH 173 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEecCC
Confidence 457999999999999999999998 8 9999998754
No 444
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=89.25 E-value=0.73 Score=44.62 Aligned_cols=36 Identities=19% Similarity=0.040 Sum_probs=31.7
Q ss_pred CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
.+|||.|.|+ |.+|+.++..|.++ | ++|+.++|...
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~-g-----~~V~~~d~~~~ 50 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFL-N-----QTVIGLDNFST 50 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHC-C-----CEEEEEeCCCC
Confidence 3489999996 99999999999999 8 89999998653
No 445
>PRK07326 short chain dehydrogenase; Provisional
Probab=89.19 E-value=0.71 Score=41.38 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=32.4
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
++|.|+|+ |.+|..++..|++. | ++|++.+|+++..+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~-g-----~~V~~~~r~~~~~~ 44 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAE-G-----YKVAITARDQKELE 44 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC-C-----CEEEEeeCCHHHHH
Confidence 68999996 99999999999998 8 89999999876543
No 446
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=89.01 E-value=0.62 Score=46.81 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=31.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
||||.|||+|.-|...|..|.+. + ++++|+++++++.
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~-~---~~~~I~li~~~~~ 37 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRL-D---KESDIIIFEKDRD 37 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhh-C---CCCCEEEEECCCC
Confidence 57999999999999999999875 3 2379999999864
No 447
>PRK06101 short chain dehydrogenase; Provisional
Probab=89.00 E-value=0.59 Score=42.41 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=32.2
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
.++.|.|+ |.+|..++..|++. | ++|.+++|+++..+
T Consensus 2 ~~vlItGas~giG~~la~~L~~~-G-----~~V~~~~r~~~~~~ 39 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQ-G-----WQVIACGRNQSVLD 39 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhC-C-----CEEEEEECCHHHHH
Confidence 57889995 99999999999999 8 89999999876543
No 448
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=88.97 E-value=0.6 Score=40.93 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=26.0
Q ss_pred EEECCCHHHHHHHHHHHHhcCCCCCCee-EEEEecCCcch
Q 019978 47 VGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSV 85 (333)
Q Consensus 47 ~IIGaG~mG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~ 85 (333)
+|||||.-|.+.|..|.+. | .+ |++++++.+.-
T Consensus 1 ~IIGaG~aGl~~a~~l~~~-g-----~~~v~v~e~~~~~G 34 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER-G-----IDPVVVLERNDRPG 34 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT-T--------EEEEESSSSST
T ss_pred CEECcCHHHHHHHHHHHhC-C-----CCcEEEEeCCCCCC
Confidence 5999999999999999999 8 77 99999987643
No 449
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=88.94 E-value=7.3 Score=33.79 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=27.6
Q ss_pred ceEEEEC-C-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVG-A-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIG-a-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.||++|| . +++..+++..++.- | .+|++.....
T Consensus 3 l~i~~vGD~~~rv~~Sl~~~~~~~-g-----~~~~~~~P~~ 37 (158)
T PF00185_consen 3 LKIAYVGDGHNRVAHSLIELLAKF-G-----MEVVLIAPEG 37 (158)
T ss_dssp EEEEEESSTTSHHHHHHHHHHHHT-T-----SEEEEESSGG
T ss_pred CEEEEECCCCChHHHHHHHHHHHc-C-----CEEEEECCCc
Confidence 6899999 4 89999999999987 8 7777776654
No 450
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=88.91 E-value=0.57 Score=46.38 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=32.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (333)
++-|+|||||.-|++.|..|+++ | .+|.++.+..+.
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~-G-----~~VlvlEk~~~~ 38 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKA-G-----LDVLVLEKGSEP 38 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHc-C-----CeEEEEecCCCC
Confidence 46799999999999999999999 8 899999997754
No 451
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=88.80 E-value=3.5 Score=38.16 Aligned_cols=34 Identities=12% Similarity=0.221 Sum_probs=29.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.++|.|||+|.+|..=+..|.+. | -+|++++..-
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~-g-----A~VtVVap~i 58 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKK-G-----CYVYILSKKF 58 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcCCC
Confidence 36899999999999988899888 7 8999998654
No 452
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=88.79 E-value=0.56 Score=46.13 Aligned_cols=31 Identities=19% Similarity=0.375 Sum_probs=29.3
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (333)
.|.|||+|.-|++.|..|++. | ++|.++++.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~-G-----~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARA-G-----IETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECC
Confidence 589999999999999999999 8 999999987
No 453
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=88.78 E-value=4.5 Score=40.07 Aligned_cols=42 Identities=26% Similarity=0.403 Sum_probs=31.6
Q ss_pred CCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchh
Q 019978 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVD 86 (333)
Q Consensus 40 ~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~ 86 (333)
+..+-||++||+|-||+.+....+.-.| .+|. +-+|+-+.+.
T Consensus 14 ~G~PiRVGlIGAG~mG~~ivtQi~~m~G-----m~vvaisd~~~~~ak 56 (438)
T COG4091 14 EGKPIRVGLIGAGEMGTGIVTQIASMPG-----MEVVAISDRNLDAAK 56 (438)
T ss_pred cCCceEEEEecccccchHHHHHHhhcCC-----ceEEEEecccchHHH
Confidence 3567899999999999999999876535 5544 5577766543
No 454
>PRK07233 hypothetical protein; Provisional
Probab=88.76 E-value=0.54 Score=46.22 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=29.6
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
||+|||+|.-|.+-|..|++. | ++|+++.+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-G-----~~v~vlE~~~ 32 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-G-----HEVTVFEADD 32 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CcEEEEEeCC
Confidence 689999999999999999999 8 8999998776
No 455
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.67 E-value=0.65 Score=47.14 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=30.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
.++|.|+|+|..|..+|..|++. | ++|+++++++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~-G-----~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLEL-G-----ARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCc
Confidence 35899999999999999999988 8 8999999765
No 456
>PRK07190 hypothetical protein; Provisional
Probab=88.67 E-value=0.66 Score=47.56 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=31.4
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
..|.|||+|..|.++|..|++. | .+|.++++.++
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~-G-----i~V~llEr~~~ 39 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLC-G-----LNTVIVDKSDG 39 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHc-C-----CCEEEEeCCCc
Confidence 5799999999999999999998 8 89999999875
No 457
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=88.62 E-value=0.93 Score=47.54 Aligned_cols=57 Identities=18% Similarity=0.122 Sum_probs=40.4
Q ss_pred cccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 21 TNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
+||+.+.- ..+ ......+.++|.|||+|--|.+-|..|++. |.+.+ ++|+++.+.+.
T Consensus 4 ~~~~~~~~-~~~---~~~~~~~~~~a~IIGaGiAGLAAA~~L~~d-g~~~G-~~VtIlEk~~~ 60 (576)
T PRK13977 4 SNGNYEAF-ARP---RKPEGVDNKKAYIIGSGLASLAAAVFLIRD-GQMPG-ENITILEELDV 60 (576)
T ss_pred CCCcHHHh-ccC---CCCCCCCCCeEEEECCCHHHHHHHHHHHHc-cCCCC-CcEEEEeCCCC
Confidence 45665542 222 222334568999999999999999999987 54333 79999988763
No 458
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=88.62 E-value=3.1 Score=38.11 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=30.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
++|.|||.|..|..=+..|.+. | -+|++|+...
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~-g-----a~v~Vvs~~~ 45 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKA-G-----ADVTVVSPEF 45 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-C-----CEEEEEcCCc
Confidence 6999999999999999999998 8 8999998776
No 459
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=88.60 E-value=0.56 Score=45.69 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=28.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHh--cCCCCCCeeEEEEecC
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDS--YGYLRDKVLIRIWRRP 81 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~--~G~~~~~~~V~l~~r~ 81 (333)
++|.|||+|..|.++|..|++. .| ++|+++++.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G-----~~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGG-----LPVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCC-----CEEEEEeCC
Confidence 6899999999999999999773 15 899999994
No 460
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=88.58 E-value=0.65 Score=47.79 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=30.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
...|+|||+|.||+++|..|++. + ++++|.++.+...
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~-~---~g~~V~VlEk~~~ 41 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKEL-E---PEWSITMFERLDG 41 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHh-C---CCCeEEEEEcCCc
Confidence 35799999999999999999984 2 1278999998753
No 461
>PRK06194 hypothetical protein; Provisional
Probab=88.54 E-value=0.91 Score=42.17 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=32.4
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
++|.|.|+ |.+|..++..|++. | ++|++++|+.+..+
T Consensus 7 k~vlVtGasggIG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 44 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAAL-G-----MKLVLADVQQDALD 44 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHC-C-----CEEEEEeCChHHHH
Confidence 68999996 99999999999999 8 89999999876543
No 462
>PRK06834 hypothetical protein; Provisional
Probab=88.53 E-value=0.6 Score=47.84 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=31.4
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
..|.|||+|..|.++|..|++. | ++|+++++.++
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~-G-----~~v~vlEr~~~ 37 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALA-G-----VDVAIVERRPN 37 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 4799999999999999999999 8 99999998764
No 463
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=88.50 E-value=0.64 Score=46.65 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=31.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
...|.|||+|.-|++.|..|+++ | ++|.++++.+.
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~-G-----~~V~llEr~~~ 39 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLARE-G-----AQVLVIERGNS 39 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhC-C-----CeEEEEEcCCC
Confidence 46899999999999999999999 8 99999998753
No 464
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.49 E-value=2.7 Score=41.32 Aligned_cols=89 Identities=19% Similarity=0.151 Sum_probs=55.5
Q ss_pred CCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhh
Q 019978 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (333)
Q Consensus 40 ~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (333)
....-|++|+|+|.|+.-++..|.-. - +.+|.|+ +++|+.+++.+. .++ |. ++
T Consensus 3 ~s~~ir~Gi~g~g~ia~~f~~al~~~-p--~s~~~Ivava~~s~~~A~~f---------Aq~---------~~--~~--- 56 (351)
T KOG2741|consen 3 DSATIRWGIVGAGRIARDFVRALHTL-P--ESNHQIVAVADPSLERAKEF---------AQR---------HN--IP--- 56 (351)
T ss_pred CCceeEEEEeehhHHHHHHHHHhccC-c--ccCcEEEEEecccHHHHHHH---------HHh---------cC--CC---
Confidence 34457999999999999999888533 1 1237765 566655543221 111 10 11
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCC--CEEEEecCchhHHHHHHHHHh
Q 019978 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDA--DIVINGLPSTETKEVFEEISR 182 (333)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~a--DlIIlaVps~~~~~vl~~i~~ 182 (333)
+.++..+.|+.+++. |+|.+++|..+.-+++--+..
T Consensus 57 ----------------------------~~k~y~syEeLakd~~vDvVyi~~~~~qH~evv~l~l~ 94 (351)
T KOG2741|consen 57 ----------------------------NPKAYGSYEELAKDPEVDVVYISTPNPQHYEVVMLALN 94 (351)
T ss_pred ----------------------------CCccccCHHHHhcCCCcCEEEeCCCCccHHHHHHHHHH
Confidence 234456677777765 999999997766666655443
No 465
>PRK07208 hypothetical protein; Provisional
Probab=88.48 E-value=0.69 Score=46.70 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=31.2
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
++++|+|||+|.-|.+.|..|++. | ++|+++..++
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~-g-----~~v~v~E~~~ 37 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKR-G-----YPVTVLEADP 37 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHC-C-----CcEEEEecCC
Confidence 456899999999999999999998 8 8999998755
No 466
>PRK07024 short chain dehydrogenase; Provisional
Probab=88.46 E-value=0.71 Score=42.28 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=32.3
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
++|.|.|+ |.+|.+++..|++. | ++|.+.+|+++.++
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~-G-----~~v~~~~r~~~~~~ 40 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQ-G-----ATLGLVARRTDALQ 40 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 68999995 99999999999999 8 89999999876543
No 467
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=88.40 E-value=0.72 Score=43.94 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=29.6
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
|||.|.|+ |.+|..++..|.+. | ++|++++|..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~~~~ 34 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQN-G-----HDVVILDNLC 34 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 78999995 99999999999999 8 9999988754
No 468
>PRK05993 short chain dehydrogenase; Provisional
Probab=88.39 E-value=0.71 Score=42.98 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=32.8
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
++|.|.|+ |.+|.++|..|++. | ++|.+.+|+++.++
T Consensus 5 k~vlItGasggiG~~la~~l~~~-G-----~~Vi~~~r~~~~~~ 42 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSD-G-----WRVFATCRKEEDVA 42 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 47899998 99999999999999 8 89999999886554
No 469
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=88.38 E-value=0.65 Score=48.33 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=30.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
-++|+|||+|..|.+.|..|++. | ++|+++++.+
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~-G-----~~V~v~e~~~ 170 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRM-G-----HAVTIFEAGP 170 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 36999999999999999999998 8 8999998764
No 470
>PRK12939 short chain dehydrogenase; Provisional
Probab=88.34 E-value=0.96 Score=40.71 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=32.6
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
++|.|.|+ |.+|..++..|++. | ++|.+.+|+++..+
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~-G-----~~v~~~~r~~~~~~ 45 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEA-G-----ATVAFNDGLAAEAR 45 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHc-C-----CEEEEEeCCHHHHH
Confidence 78999997 99999999999998 8 89999999876543
No 471
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=88.26 E-value=1.7 Score=48.57 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=30.7
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
.+|.|+|+|.+|+-+|..|+.. |. ..++++|.+.-
T Consensus 25 s~VLIiG~gGLG~EiaKnL~la-GV----g~iti~D~d~v 59 (1008)
T TIGR01408 25 SNVLISGMGGLGLEIAKNLVLA-GV----KSVTLHDTEKC 59 (1008)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCee
Confidence 5899999999999999999999 83 47999987753
No 472
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=88.21 E-value=0.95 Score=41.25 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=32.7
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
++|.|.|+ |.+|.+++..|++. | ++|.+.+|+++..+
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~-G-----~~V~~~~r~~~~~~ 48 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQA-G-----AEVILNGRDPAKLA 48 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHc-C-----CEEEEEeCCHHHHH
Confidence 68999996 99999999999999 8 89999999876543
No 473
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=88.20 E-value=0.88 Score=40.64 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=32.7
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
++|.|.|+ |.+|..++..|++. | ++|.+++|+++..+
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~-g-----~~v~~~~r~~~~~~ 43 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAAD-G-----AKVVIYDSNEEAAE 43 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEeCChhHHH
Confidence 68999997 99999999999998 8 89999999976543
No 474
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=88.20 E-value=1.1 Score=42.06 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=31.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
..|.|||+|.-|.+.|..|++. | ++|.++++...
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~-G-----~~V~liEk~~~ 59 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKA-G-----LKVAVFERKLS 59 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhC-C-----CeEEEEecCCC
Confidence 4799999999999999999998 8 99999998764
No 475
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=88.19 E-value=14 Score=34.67 Aligned_cols=156 Identities=12% Similarity=0.100 Sum_probs=78.7
Q ss_pred hcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCC------CCcEEEE
Q 019978 158 VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP------IENILYL 231 (333)
Q Consensus 158 ~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~------~~~~~vl 231 (333)
.+-.+++|.-+|...+..+...... .+ +++++.++ |.... +++.. ++.. .+|....
T Consensus 65 ael~~~vfv~vpd~~~s~vaa~~~~--rp---g~iv~HcS-ga~~~-----------~il~~-~gr~g~~~asiHP~f~F 126 (289)
T COG5495 65 AELLLLVFVDVPDALYSGVAATSLN--RP---GTIVAHCS-GANGS-----------GILAP-LGRQGCIPASIHPAFSF 126 (289)
T ss_pred hhhhceEEecchHHHHHHHHHhccc--CC---CeEEEEcc-CCCch-----------hhhhh-hhhcCCcceeecccccc
Confidence 3456888888888866666554332 23 67776654 54432 22322 2221 1222233
Q ss_pred cCCCchHHHhccCceeEEE-eCCh---hhHHHHHHHhCCCCeEEEecCChhHHHHHHHHHH----HHHHHHHHHhccCCC
Q 019978 232 GGPNIASEIYNKEYANARI-CGAE---KWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKN----VYAIGAGMVAALTNE 303 (333)
Q Consensus 232 ~GP~~a~ev~~~~~~~~~~-~~~~---~~~~~l~~ll~~~~~~v~~s~Di~gve~~~alkN----v~Ai~~Gi~~gl~~~ 303 (333)
+|-. ++..+-.-+++.+ ..|+ ...+.+..-+...+|.+....-+.-.....--.| +++-+.-+....+..
T Consensus 127 sgl~--edl~rl~d~~~~i~eaD~~g~ai~q~la~emgg~~f~V~~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~D 204 (289)
T COG5495 127 SGLD--EDLSRLKDTIFGITEADDVGYAIVQSLALEMGGEPFCVREEARILYHAAAVHASNFIVTVLADALEIYRAAGDD 204 (289)
T ss_pred cCCH--HHHHhCcccEEEeecccccccHHHHHHHHHhCCCceeechhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCC
Confidence 3322 2222111232223 3333 4677777778888888876555554433322222 233344444333321
Q ss_pred CCccH---HHHHHHHHHHHHHH--H-HCCCCCCCCC
Q 019978 304 SATSK---SVYFAHCTSEMVVM--H-GMGRSWQKGD 333 (333)
Q Consensus 304 ~~n~~---~~l~~~~~~E~~~l--~-~~G~~~~~~~ 333 (333)
-.... ..|+.-++.-+.+. + ++-|++.+||
T Consensus 205 q~e~iv~~~pL~~g~~~n~~qrg~a~aLTgpVaRGD 240 (289)
T COG5495 205 QPELIVEVGPLARGALENTLQRGQACALTGPVARGD 240 (289)
T ss_pred CcceeeeehHHHHHHHHHHHHhhhhhcccCCcccCc
Confidence 11111 23666666666665 4 7999999998
No 476
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=88.16 E-value=0.68 Score=51.35 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=31.4
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (333)
..+||+|||+|.-|.+.|..|++. | |+|++|+..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~-G-----h~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRS-G-----HNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-C-----CeEEEEccc
Confidence 457999999999999999999999 8 999999974
No 477
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=88.10 E-value=0.89 Score=39.63 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=28.9
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
+|.|||+|.-|.+.|..|++. + .+|.+++..+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-~-----~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-G-----AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-T-----SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcC-C-----CeEEEEeccc
Confidence 689999999999999999988 7 8999997655
No 478
>PLN02214 cinnamoyl-CoA reductase
Probab=88.09 E-value=0.81 Score=44.29 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=33.1
Q ss_pred CCCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978 41 GDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 41 ~~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (333)
...++|.|.|+ |.+|+.++..|.++ | ++|+...|+.+.
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~-G-----~~V~~~~r~~~~ 46 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLER-G-----YTVKGTVRNPDD 46 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC-c-----CEEEEEeCCchh
Confidence 34578999998 99999999999999 8 999999998653
No 479
>PRK07109 short chain dehydrogenase; Provisional
Probab=88.08 E-value=0.91 Score=43.92 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=33.2
Q ss_pred CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
.++|.|.|+ |.+|.+++..|++. | ++|++++|+++.++
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~-G-----~~Vvl~~R~~~~l~ 46 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARR-G-----AKVVLLARGEEGLE 46 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 368999997 99999999999999 8 89999999876554
No 480
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=88.08 E-value=0.69 Score=45.30 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=30.5
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
.+|.|||+|.-|.++|..|++. | ++++|+++++.++
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~-g---~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQA-A---PHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcC-C---CCCEEEEEeCCCc
Confidence 4799999999999999999987 4 1278999999764
No 481
>PRK07774 short chain dehydrogenase; Provisional
Probab=88.03 E-value=1.1 Score=40.60 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=32.2
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (333)
+++.|.|+ |.+|..++..|++. | ++|++.+|+++..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~-g-----~~vi~~~r~~~~~ 43 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALARE-G-----ASVVVADINAEGA 43 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHHH
Confidence 68999997 99999999999999 8 8999999987544
No 482
>PLN02778 3,5-epimerase/4-reductase
Probab=88.01 E-value=1.1 Score=42.58 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=31.6
Q ss_pred ccCCCCCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978 37 GKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (333)
Q Consensus 37 ~~~~~~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (333)
|++....|||.|.|+ |.+|+.++..|.+. | ++|++..++
T Consensus 3 ~~~~~~~~kiLVtG~tGfiG~~l~~~L~~~-g-----~~V~~~~~~ 42 (298)
T PLN02778 3 GTAGSATLKFLIYGKTGWIGGLLGKLCQEQ-G-----IDFHYGSGR 42 (298)
T ss_pred CCCCCCCCeEEEECCCCHHHHHHHHHHHhC-C-----CEEEEecCc
Confidence 345556689999996 99999999999998 8 898765443
No 483
>PRK06057 short chain dehydrogenase; Provisional
Probab=88.00 E-value=0.83 Score=41.70 Aligned_cols=36 Identities=14% Similarity=0.033 Sum_probs=32.3
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (333)
++|.|+|+ |.+|.+++..|++. | ++|.+.+|+++..
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~-G-----~~v~~~~r~~~~~ 44 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAE-G-----ATVVVGDIDPEAG 44 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHc-C-----CEEEEEeCCHHHH
Confidence 68999998 99999999999998 8 8999999987544
No 484
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=87.94 E-value=0.65 Score=45.10 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=29.7
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
.|.|||+|..|+++|..|++. | +++|+++++.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~-G----~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL-G----KIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC-C----CceEEEEeCCCc
Confidence 389999999999999999998 6 279999998764
No 485
>PRK07060 short chain dehydrogenase; Provisional
Probab=87.91 E-value=0.82 Score=41.13 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=32.7
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
+++.|.|+ |.+|..++..|++. | ++|++.+|+++.++
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~-g-----~~V~~~~r~~~~~~ 47 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQR-G-----ARVVAAARNAAALD 47 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 68999998 89999999999999 8 89999999876543
No 486
>PRK12829 short chain dehydrogenase; Provisional
Probab=87.90 E-value=0.8 Score=41.70 Aligned_cols=37 Identities=14% Similarity=0.354 Sum_probs=32.8
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
+++.|.|+ |.+|..++..|+++ | ++|++.+|+++..+
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~-g-----~~V~~~~r~~~~~~ 49 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEA-G-----ARVHVCDVSEAALA 49 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 69999997 99999999999999 8 89999999876443
No 487
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=87.87 E-value=1 Score=40.96 Aligned_cols=38 Identities=13% Similarity=0.178 Sum_probs=33.1
Q ss_pred CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
.++|.|.|+ |.+|.+++..|++. | ++|++++|+++.++
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~-G-----~~v~~~~r~~~~~~ 49 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGA-G-----AHVLVNGRNAATLE 49 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc-C-----CeEEEEeCCHHHHH
Confidence 468999997 99999999999998 8 89999999876543
No 488
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=87.83 E-value=0.74 Score=46.71 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=31.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (333)
|++|.|||+|..|...|..+++. | ++|.++.++.
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~-g-----~~v~~~e~~~ 34 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQL-G-----ADVTVIERDG 34 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEEccC
Confidence 57899999999999999999998 8 9999999764
No 489
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=87.82 E-value=0.79 Score=49.67 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=31.1
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
|||+|||+|.-|.+.|..|++. | ++++|+++.++++
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~-~---~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLL-D---PAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHh-C---CCCeEEEEecCCC
Confidence 7999999999999999999886 2 1289999999874
No 490
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=87.81 E-value=0.71 Score=46.44 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=28.3
Q ss_pred eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhh
Q 019978 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (333)
Q Consensus 45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (333)
+|.|||+|+-|..-|..+++. | .+|.++.++++.-+++
T Consensus 2 dviIIGgGaAGl~aA~~aa~~-g-----~~V~vlE~~~~~gkKi 39 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEK-G-----ARVLVLERNKRVGKKI 39 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHT-T-------EEEE-SSSSS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhC-C-----CCEEEEeCCcccccce
Confidence 689999999999999999999 8 9999999998765443
No 491
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=87.71 E-value=0.75 Score=46.76 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=31.1
Q ss_pred ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
++|+|||+|.-|.+.|..|+++ | ++|.++.++..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~-G-----~~v~vlE~~~~ 35 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR-G-----YRVTLLEQHAQ 35 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-C-----CeEEEEecCCC
Confidence 5799999999999999999999 8 99999988753
No 492
>PRK08703 short chain dehydrogenase; Provisional
Probab=87.67 E-value=1.1 Score=40.39 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=32.7
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
++|.|.|+ |.+|..++..|++. | ++|.+++|+++..+
T Consensus 7 k~vlItG~sggiG~~la~~l~~~-g-----~~V~~~~r~~~~~~ 44 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAA-G-----ATVILVARHQKKLE 44 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHc-C-----CEEEEEeCChHHHH
Confidence 68999996 99999999999998 8 89999999986543
No 493
>PRK07890 short chain dehydrogenase; Provisional
Probab=87.64 E-value=0.82 Score=41.54 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=32.5
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
++|.|.|+ |.+|.++|..|++. | ++|.+.+|+++..+
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 43 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARA-G-----ADVVLAARTAERLD 43 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHc-C-----CEEEEEeCCHHHHH
Confidence 68999996 99999999999999 8 89999999876443
No 494
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=87.58 E-value=0.95 Score=39.48 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=31.4
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
.+.||+|+|+|..|..-+..+..- | ++|+.++.+++..+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l-G-----a~v~~~d~~~~~~~ 57 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL-G-----AEVVVPDERPERLR 57 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT-T------EEEEEESSHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC-C-----CEEEeccCCHHHHH
Confidence 458999999999999999998877 8 99999999876543
No 495
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=87.57 E-value=0.83 Score=45.33 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=32.4
Q ss_pred CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (333)
.|||.|+|+ |.+|+.++..|.++ | ++|++++|+.+.
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~-G-----~~V~~l~R~~~~ 96 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRR-G-----YNVVAVAREKSG 96 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEEechhh
Confidence 479999997 99999999999999 8 999999998754
No 496
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=87.49 E-value=0.95 Score=43.75 Aligned_cols=38 Identities=21% Similarity=0.179 Sum_probs=32.8
Q ss_pred CCCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978 41 GDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (333)
Q Consensus 41 ~~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (333)
+..|||.|.|+ |.+|+.++..|.+. | ++|++.+|+.+.
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~-G-----~~V~~~~r~~~~ 46 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQR-G-----YTVHATLRDPAK 46 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEeCChHH
Confidence 34589999995 99999999999999 8 899998887653
No 497
>PLN02487 zeta-carotene desaturase
Probab=87.48 E-value=0.92 Score=47.57 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=32.4
Q ss_pred CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
.++||+|||+|.-|.+.|..|++. | ++|+++.+.+.
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~-g-----~~v~i~E~~~~ 109 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQ-G-----HEVDIYESRPF 109 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC-C-----CeeEEEecCCC
Confidence 457999999999999999999999 8 99999998764
No 498
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=87.44 E-value=1.2 Score=40.47 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=32.9
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
+++.|.|+ |.+|..++..|++. | ++|.+.+|+++..+
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~-G-----~~v~~~~r~~~~~~ 45 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARA-G-----AAVAIADLNQDGAN 45 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHC-C-----CeEEEEeCChHHHH
Confidence 68999998 99999999999999 8 89999999886543
No 499
>PRK06949 short chain dehydrogenase; Provisional
Probab=87.39 E-value=0.89 Score=41.30 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=33.0
Q ss_pred ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (333)
Q Consensus 44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (333)
++|.|.|+ |.+|.+++..|++. | ++|++.+|+++.++
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~-G-----~~Vi~~~r~~~~~~ 47 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQA-G-----AKVVLASRRVERLK 47 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 78999997 99999999999998 8 89999999886554
No 500
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=87.38 E-value=0.86 Score=45.67 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=31.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (333)
Q Consensus 43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (333)
+.+|+|+|+|-.|++.|..|.+. | ++|.+|...++
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~-G-----~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRK-G-----IDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHc-C-----CeEEEEeeccc
Confidence 35899999999999999999999 8 99999988664
Done!