BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019979
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DSY|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DT2|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DHL|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
Length = 426
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 132/307 (42%), Positives = 176/307 (57%), Gaps = 17/307 (5%)
Query: 43 PQQVHIS---LAGDSHMRVTWITDDESSPSVVEYGTSPGGYNCGAEGESTSYRYLFYRSG 99
PQQVHI+ L G + M ++W+T DE S V Y + G A+G+ ++YR+ Y SG
Sbjct: 21 PQQVHITQGDLVGRA-MIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSG 79
Query: 100 KIHHTVIGPLEHDTVYFYRCGRQGP--EFEFKTPPA---QFPITFAVAGDLGQTGWTKST 154
IHHT I L+++T Y+Y G + F F TPP P TF + GDLGQ+ + +T
Sbjct: 80 FIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTT 139
Query: 155 LDH--IGQCKYDVHLLPGDLSYAD-YMQH---RWDTFGELVQPLASARPWMVTQGNHEKE 208
L H + K L GDLSYAD Y H RWDT+G + + +PW+ T GNHE E
Sbjct: 140 LSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIE 199
Query: 209 SIPLIMDA--FQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRW 266
P I + F+ ++ R+ +P+E S S S +YS A AH+I+L SY+ Y + QY W
Sbjct: 200 FAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTW 259
Query: 267 LKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVH 326
LK +L KV R +TPWL+VL+H P YNS H EG+ M E VD+V AGHVH
Sbjct: 260 LKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVH 319
Query: 327 AYERSVR 333
AYERS R
Sbjct: 320 AYERSER 326
>pdb|2QFP|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFR|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
pdb|2QFR|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
Length = 424
Score = 223 bits (567), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 132/307 (42%), Positives = 176/307 (57%), Gaps = 17/307 (5%)
Query: 43 PQQVHIS---LAGDSHMRVTWITDDESSPSVVEYGTSPGGYNCGAEGESTSYRYLFYRSG 99
PQQVHI+ L G + M ++W+T DE S V Y + G A+G+ ++YR+ Y SG
Sbjct: 19 PQQVHITQGDLVGRA-MIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSG 77
Query: 100 KIHHTVIGPLEHDTVYFYRCGRQGP--EFEFKTPPA---QFPITFAVAGDLGQTGWTKST 154
IHHT I L+++T Y+Y G + F F TPP P TF + GDLGQ+ + +T
Sbjct: 78 FIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTT 137
Query: 155 LDH--IGQCKYDVHLLPGDLSYAD-YMQH---RWDTFGELVQPLASARPWMVTQGNHEKE 208
L H + K L GDLSYAD Y H RWDT+G + + +PW+ T GNHE E
Sbjct: 138 LSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIE 197
Query: 209 SIPLIMDA--FQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRW 266
P I + F+ ++ R+ +P+E S S S +YS A AH+I+L SY+ Y + QY W
Sbjct: 198 FAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTW 257
Query: 267 LKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVH 326
LK +L KV R +TPWL+VL+H P YNS H EG+ M E VD+V AGHVH
Sbjct: 258 LKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVH 317
Query: 327 AYERSVR 333
AYERS R
Sbjct: 318 AYERSER 324
>pdb|1KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
Length = 432
Score = 223 bits (567), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 132/307 (42%), Positives = 176/307 (57%), Gaps = 17/307 (5%)
Query: 43 PQQVHIS---LAGDSHMRVTWITDDESSPSVVEYGTSPGGYNCGAEGESTSYRYLFYRSG 99
PQQVHI+ L G + M ++W+T DE S V Y + G A+G+ ++YR+ Y SG
Sbjct: 27 PQQVHITQGDLVGRA-MIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSG 85
Query: 100 KIHHTVIGPLEHDTVYFYRCGRQGP--EFEFKTPPA---QFPITFAVAGDLGQTGWTKST 154
IHHT I L+++T Y+Y G + F F TPP P TF + GDLGQ+ + +T
Sbjct: 86 FIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTT 145
Query: 155 LDH--IGQCKYDVHLLPGDLSYAD-YMQH---RWDTFGELVQPLASARPWMVTQGNHEKE 208
L H + K L GDLSYAD Y H RWDT+G + + +PW+ T GNHE E
Sbjct: 146 LSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIE 205
Query: 209 SIPLIMDA--FQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRW 266
P I + F+ ++ R+ +P+E S S S +YS A AH+I+L SY+ Y + QY W
Sbjct: 206 FAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTW 265
Query: 267 LKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVH 326
LK +L KV R +TPWL+VL+H P YNS H EG+ M E VD+V AGHVH
Sbjct: 266 LKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVH 325
Query: 327 AYERSVR 333
AYERS R
Sbjct: 326 AYERSER 332
>pdb|1XZW|A Chain A, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
pdb|1XZW|B Chain B, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
Length = 426
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 131/326 (40%), Positives = 180/326 (55%), Gaps = 24/326 (7%)
Query: 31 LEFPWD------PKPSSHPQQVHISLAGDSHMR---VTWITD-DESSPSVVEYGTSPGGY 80
++ PWD P + PQQVHI+ GD R ++W T D++ + V Y +
Sbjct: 7 VDMPWDSDVFAVPSGYNAPQQVHIT-QGDYEGRGVIISWTTPYDKAGANKVFYWSENSKS 65
Query: 81 NCGAEGESTSYRYLFYRSGKIHHTVIGPLEHDTVYFYRCG--RQGPEFEFKTPPA---QF 135
A G +Y+Y Y S IHH I LE+DT Y+YR G +F F TPP
Sbjct: 66 QKRAMGTVVTYKYYNYTSAFIHHCTIKDLEYDTKYYYRLGFGDAKRQFWFVTPPKPGPDV 125
Query: 136 PITFAVAGDLGQTGWTKSTLDHIGQ--CKYDVHLLPGDLSYAD----YMQHRWDTFGELV 189
P F + GD+GQT + +TL H Q K L GDLSY++ + +RWDT+G
Sbjct: 126 PYVFGLIGDIGQTHDSNTTLTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNNRWDTWGRFS 185
Query: 190 QPLASARPWMVTQGNHEKESIPLIMD--AFQSYNARWKMPFEESGSNSNLYYSFDVAGAH 247
+ + +PW+ T GNHE + P I + F + R+ P E SGS L+Y+ A AH
Sbjct: 186 ERSVAYQPWIWTAGNHEIDYAPDIGEYQPFVPFTNRYPTPHEASGSGDPLWYAIKRASAH 245
Query: 248 LIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAI 307
+I+L SY+ + +YS QY+W +L KV+R +TPWL+VL+H P YNS EAH EG+ M AI
Sbjct: 246 IIVLSSYSGFVKYSPQYKWFTSELEKVNRSETPWLIVLVHAPLYNSYEAHYMEGEAMRAI 305
Query: 308 MEPLLYAASVDLVLAGHVHAYERSVR 333
EP VD+V +GHVH+YERS R
Sbjct: 306 FEPYFVYYKVDIVFSGHVHSYERSER 331
>pdb|1QFC|A Chain A, Structure Of Rat Purple Acid Phosphatase
Length = 306
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 56/149 (37%), Gaps = 28/149 (18%)
Query: 197 PWMVTQGNHEKESIPLIMDAFQSYNARWKMP-------FEESGSNSNL-YYSFDVAGAHL 248
PW V GNH+ A+ + RW P F+ SN + + D +
Sbjct: 84 PWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPYYRLRFKVPRSNITVAIFMLDT----V 139
Query: 249 IMLGSYADYDEYS-----------DQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAH 297
++ G+ D+ Q WLK L+ K ++LV H P ++ A
Sbjct: 140 MLCGNSDDFVSQQPEMPRDLGVARTQLSWLKKQLAAA---KEDYVLVAGHYPIWSI--AE 194
Query: 298 QGEGDGMMAIMEPLLYAASVDLVLAGHVH 326
G ++ + PLL A V L GH H
Sbjct: 195 HGPTRCLVKNLRPLLAAYGVTAYLCGHDH 223
>pdb|1QHW|A Chain A, Purple Acid Phosphatase From Rat Bone
Length = 327
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 56/149 (37%), Gaps = 28/149 (18%)
Query: 197 PWMVTQGNHEKESIPLIMDAFQSYNARWKMP-------FEESGSNSNL-YYSFDVAGAHL 248
PW V GNH+ A+ + RW P F+ SN + + D +
Sbjct: 105 PWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPYYRLRFKVPRSNITVAIFMLDT----V 160
Query: 249 IMLGSYADYDEYS-----------DQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAH 297
++ G+ D+ Q WLK L+ K ++LV H P ++ A
Sbjct: 161 MLCGNSDDFVSQQPEMPRDLGVARTQLSWLKKQLAAA---KEDYVLVAGHYPIWSI--AE 215
Query: 298 QGEGDGMMAIMEPLLYAASVDLVLAGHVH 326
G ++ + PLL A V L GH H
Sbjct: 216 HGPTRCLVKNLRPLLAAYGVTAYLCGHDH 244
>pdb|1WAR|A Chain A, Recombinant Human Purple Acid Phosphatase Expressed In
Pichia Pastoris
Length = 310
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 84/237 (35%), Gaps = 47/237 (19%)
Query: 125 EFEFKTPPAQFPIT----------FAVAGDLGQTGWTKSTLDHIGQCKYDVHLLPGDLSY 174
E EF TP +F F A ++ T+ +G D L GD Y
Sbjct: 3 EAEFATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGA---DFILSLGDNFY 59
Query: 175 ADYMQHRWDT-FGELVQPLASAR-----PWMVTQGNHEKESIPLIMDAFQSYNARWKMP- 227
+Q D F E + + S R PW V GNH+ A+ + RW P
Sbjct: 60 FTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPS 119
Query: 228 ------FEESGSNSNL-YYSFDVAGAHLIMLGSYADY-----------DEYSDQYRWLKD 269
F+ +N ++ + D + + G+ D+ Q WLK
Sbjct: 120 PFYRLHFKIPQTNVSVAIFMLDT----VTLCGNSDDFLSQQPERPRDVKLARTQLSWLKK 175
Query: 270 DLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVH 326
L+ + ++LV H P ++ A G ++ + PLL V L GH H
Sbjct: 176 QLAAA---REDYVLVAGHYPVWSI--AEHGPTHCLVKQLRPLLATYGVTAYLCGHDH 227
>pdb|4EPQ|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase Rbpi Inhibitor
Complex From Tetrahymena Thermophila
Length = 477
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 244 AGAHLIMLG--SYADYDEYSDQYRWLKDDLSKVDRKK--TPWLLVLLHVPWYNSNEAHQG 299
A +IM G Y+DY YS+ +R++K SK+ ++K P ++ + +NS++
Sbjct: 298 ANEVIIMKGIKQYSDYQGYSNSFRFVKMGNSKIQKQKRTNPQTILAIDALCFNSSDNQFS 357
Query: 300 E 300
E
Sbjct: 358 E 358
>pdb|4EPP|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase From Tetrahymena
Thermophila.
pdb|4EPP|B Chain B, Canonical Poly(Adp-Ribose) Glycohydrolase From Tetrahymena
Thermophila
Length = 477
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 244 AGAHLIMLG--SYADYDEYSDQYRWLKDDLSKVDRKK--TPWLLVLLHVPWYNSNEAHQG 299
A +IM G Y+DY YS+ +R++K SK+ ++K P ++ + +NS++
Sbjct: 298 ANEVIIMKGIKQYSDYQGYSNSFRFVKMGNSKIQKQKRNNPQTILAIDALCFNSSDNQFS 357
Query: 300 E 300
E
Sbjct: 358 E 358
>pdb|2BQ8|X Chain X, Crystal Structure Of Human Purple Acid Phosphatase With An
Inhibitory Conformation Of The Repression Loop
Length = 304
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 55/149 (36%), Gaps = 28/149 (18%)
Query: 197 PWMVTQGNHEKESIPLIMDAFQSYNARWKMP-------FEESGSNSNL-YYSFDVAGAHL 248
PW V GNH+ A+ + RW P F+ +N ++ + D +
Sbjct: 82 PWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDT----V 137
Query: 249 IMLGSYADY-----------DEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAH 297
+ G+ D+ Q WLK L+ + ++LV H P ++ A
Sbjct: 138 TLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAA---REDYVLVAGHYPVWSI--AE 192
Query: 298 QGEGDGMMAIMEPLLYAASVDLVLAGHVH 326
G ++ + PLL V L GH H
Sbjct: 193 HGPTHCLVKQLRPLLATYGVTAYLCGHDH 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,290,944
Number of Sequences: 62578
Number of extensions: 512815
Number of successful extensions: 918
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 899
Number of HSP's gapped (non-prelim): 12
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)