Query 019979
Match_columns 333
No_of_seqs 353 out of 2503
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 06:03:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02533 probable purple acid 100.0 6.7E-66 1.4E-70 483.8 37.9 331 2-333 2-339 (427)
2 KOG1378 Purple acid phosphatas 100.0 2.9E-60 6.2E-65 431.4 29.1 293 38-333 40-349 (452)
3 cd00839 MPP_PAPs purple acid p 100.0 3E-36 6.4E-41 273.0 20.3 199 134-333 2-210 (294)
4 cd07378 MPP_ACP5 Homo sapiens 100.0 2E-28 4.3E-33 219.9 16.5 183 137-332 1-217 (277)
5 cd07395 MPP_CSTP1 Homo sapiens 100.0 5.7E-28 1.2E-32 215.1 18.6 187 134-331 2-221 (262)
6 PTZ00422 glideosome-associated 100.0 1.2E-27 2.6E-32 218.3 18.7 187 134-332 24-264 (394)
7 cd07396 MPP_Nbla03831 Homo sap 99.9 6.4E-25 1.4E-29 195.8 17.4 180 137-331 1-231 (267)
8 PF09423 PhoD: PhoD-like phosp 99.9 7.1E-24 1.5E-28 202.8 23.6 228 96-329 58-378 (453)
9 cd07401 MPP_TMEM62_N Homo sapi 99.9 6.8E-24 1.5E-28 187.7 17.4 181 139-330 2-212 (256)
10 cd07402 MPP_GpdQ Enterobacter 99.9 6E-24 1.3E-28 186.8 16.3 175 138-330 1-196 (240)
11 cd07399 MPP_YvnB Bacillus subt 99.9 5.4E-23 1.2E-27 177.2 14.0 148 137-331 1-164 (214)
12 KOG2679 Purple (tartrate-resis 99.9 3.1E-23 6.6E-28 175.5 10.6 190 128-330 34-257 (336)
13 COG3540 PhoD Phosphodiesterase 99.9 3E-22 6.6E-27 181.9 17.6 276 42-327 36-417 (522)
14 PRK11148 cyclic 3',5'-adenosin 99.9 2.3E-22 5E-27 180.1 16.5 182 128-329 5-208 (275)
15 cd00842 MPP_ASMase acid sphing 99.9 6E-21 1.3E-25 172.9 13.5 186 140-329 41-262 (296)
16 cd08163 MPP_Cdc1 Saccharomyces 99.8 3.8E-19 8.3E-24 156.7 14.9 165 153-329 35-229 (257)
17 PF00149 Metallophos: Calcineu 99.8 4E-20 8.7E-25 152.9 7.2 188 137-328 1-200 (200)
18 cd07383 MPP_Dcr2 Saccharomyces 99.8 3.5E-18 7.5E-23 145.9 12.7 149 135-331 1-179 (199)
19 cd07393 MPP_DR1119 Deinococcus 99.8 1.3E-17 2.9E-22 145.5 14.8 174 139-332 1-209 (232)
20 cd07392 MPP_PAE1087 Pyrobaculu 99.7 3.7E-17 8E-22 138.0 14.5 167 139-329 1-174 (188)
21 TIGR03729 acc_ester putative p 99.7 3.3E-17 7.1E-22 143.8 12.9 176 138-329 1-222 (239)
22 TIGR03767 P_acnes_RR metalloph 99.7 1.2E-16 2.6E-21 148.5 15.9 93 235-330 290-394 (496)
23 COG1409 Icc Predicted phosphoh 99.7 1.7E-16 3.6E-21 143.6 15.9 179 137-328 1-193 (301)
24 cd07388 MPP_Tt1561 Thermus the 99.7 8.9E-16 1.9E-20 132.0 16.2 174 135-326 3-189 (224)
25 cd07400 MPP_YydB Bacillus subt 99.6 2.1E-15 4.5E-20 121.9 11.0 115 139-330 1-127 (144)
26 cd07404 MPP_MS158 Microscilla 99.6 1.7E-15 3.8E-20 125.4 9.9 143 139-329 1-150 (166)
27 cd07385 MPP_YkuE_C Bacillus su 99.6 5E-15 1.1E-19 128.6 12.7 164 136-331 1-169 (223)
28 TIGR03768 RPA4764 metallophosp 99.6 2E-14 4.3E-19 132.5 16.0 92 236-328 292-411 (492)
29 cd00840 MPP_Mre11_N Mre11 nucl 99.6 4.6E-15 1E-19 128.7 11.4 184 138-329 1-202 (223)
30 PRK11340 phosphodiesterase Yae 99.6 1.4E-14 3.1E-19 129.3 13.3 163 133-329 46-215 (271)
31 cd00838 MPP_superfamily metall 99.4 9.6E-13 2.1E-17 103.4 10.8 116 140-332 1-119 (131)
32 KOG1432 Predicted DNA repair e 99.4 4E-12 8.7E-17 111.9 15.6 199 125-329 45-312 (379)
33 cd07379 MPP_239FB Homo sapiens 99.4 1.5E-12 3.2E-17 104.0 10.5 117 138-329 1-117 (135)
34 cd08166 MPP_Cdc1_like_1 unchar 99.3 5E-12 1.1E-16 105.7 9.2 108 157-330 37-149 (195)
35 cd07397 MPP_DevT Myxococcus xa 99.3 3.7E-11 8.1E-16 103.7 13.7 64 137-209 1-64 (238)
36 COG1408 Predicted phosphohydro 99.3 7.1E-12 1.5E-16 111.7 8.8 75 134-209 42-119 (284)
37 PRK05340 UDP-2,3-diacylglucosa 99.3 2.3E-11 4.9E-16 106.9 10.1 72 137-208 1-83 (241)
38 PF14582 Metallophos_3: Metall 99.3 3.9E-11 8.4E-16 100.4 10.7 175 137-327 6-217 (255)
39 COG2129 Predicted phosphoester 99.3 7.6E-11 1.6E-15 99.0 11.6 174 135-328 2-187 (226)
40 cd07384 MPP_Cdc1_like Saccharo 99.2 3.4E-11 7.3E-16 99.9 8.2 51 158-208 41-100 (171)
41 KOG3770 Acid sphingomyelinase 99.2 1.9E-10 4.1E-15 108.8 13.2 172 152-329 198-405 (577)
42 PF12850 Metallophos_2: Calcin 99.2 3.3E-11 7.2E-16 98.3 7.0 122 137-330 1-123 (156)
43 TIGR01854 lipid_A_lpxH UDP-2,3 99.1 9.4E-10 2E-14 96.0 12.7 69 140-208 2-81 (231)
44 cd08165 MPP_MPPE1 human MPPE1 99.1 5.3E-10 1.2E-14 91.3 10.3 51 158-208 34-89 (156)
45 cd07403 MPP_TTHA0053 Thermus t 99.1 4.9E-10 1.1E-14 88.6 9.5 103 140-330 1-105 (129)
46 cd07389 MPP_PhoD Bacillus subt 99.1 3.3E-09 7.2E-14 92.4 13.3 120 138-257 1-169 (228)
47 cd00845 MPP_UshA_N_like Escher 99.0 4.1E-09 8.8E-14 93.3 11.3 175 137-330 1-208 (252)
48 TIGR00040 yfcE phosphoesterase 99.0 5.7E-09 1.2E-13 85.6 10.4 61 137-207 1-63 (158)
49 cd00841 MPP_YfcE Escherichia c 99.0 2.1E-09 4.5E-14 87.8 7.4 58 138-208 1-59 (155)
50 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.9 4E-08 8.7E-13 86.8 15.6 175 139-331 1-232 (262)
51 TIGR00583 mre11 DNA repair pro 98.9 1.2E-08 2.6E-13 95.4 11.7 74 135-208 2-123 (405)
52 cd07410 MPP_CpdB_N Escherichia 98.9 2.5E-08 5.3E-13 89.6 13.4 179 137-329 1-231 (277)
53 PHA02546 47 endonuclease subun 98.9 6.4E-08 1.4E-12 89.3 16.0 72 137-208 1-89 (340)
54 cd07406 MPP_CG11883_N Drosophi 98.9 2.8E-08 6.1E-13 88.1 12.3 172 137-329 1-208 (257)
55 cd08164 MPP_Ted1 Saccharomyces 98.8 1.1E-08 2.5E-13 85.4 7.9 57 153-209 34-112 (193)
56 COG0420 SbcD DNA repair exonuc 98.8 2.7E-08 5.8E-13 93.8 10.7 73 137-209 1-89 (390)
57 cd07394 MPP_Vps29 Homo sapiens 98.8 1.4E-07 3E-12 78.9 13.5 60 138-207 1-64 (178)
58 cd07398 MPP_YbbF-LpxH Escheric 98.7 3.3E-08 7.2E-13 85.3 7.7 174 140-329 1-202 (217)
59 cd07412 MPP_YhcR_N Bacillus su 98.7 1.9E-07 4.1E-12 84.2 12.9 185 137-329 1-242 (288)
60 COG1768 Predicted phosphohydro 98.7 2.7E-07 5.8E-12 74.5 11.8 147 162-331 43-202 (230)
61 cd07408 MPP_SA0022_N Staphyloc 98.7 1.6E-07 3.5E-12 83.3 11.6 181 137-330 1-215 (257)
62 cd07411 MPP_SoxB_N Thermus the 98.7 2.4E-07 5.2E-12 82.5 11.5 156 153-328 40-219 (264)
63 cd07409 MPP_CD73_N CD73 ecto-5 98.6 5.2E-07 1.1E-11 81.1 12.0 156 153-329 39-219 (281)
64 TIGR00619 sbcd exonuclease Sbc 98.6 1.8E-07 3.8E-12 82.7 7.2 72 137-208 1-88 (253)
65 cd07425 MPP_Shelphs Shewanella 98.5 1.8E-07 3.8E-12 80.2 5.7 69 140-208 1-80 (208)
66 KOG3662 Cell division control 98.5 8.2E-07 1.8E-11 81.7 10.0 113 134-255 46-182 (410)
67 cd07405 MPP_UshA_N Escherichia 98.5 4E-06 8.8E-11 75.5 13.5 184 137-329 1-222 (285)
68 PRK09419 bifunctional 2',3'-cy 98.4 4.3E-06 9.3E-11 89.0 15.7 184 135-329 659-883 (1163)
69 PRK10966 exonuclease subunit S 98.4 5.3E-07 1.1E-11 84.9 7.7 72 137-208 1-87 (407)
70 cd07382 MPP_DR1281 Deinococcus 98.4 1.4E-05 3E-10 70.4 15.2 168 138-328 1-178 (255)
71 cd07380 MPP_CWF19_N Schizosacc 98.4 9.9E-07 2.1E-11 71.2 7.3 114 140-330 1-125 (150)
72 COG2908 Uncharacterized protei 98.4 5E-07 1.1E-11 77.0 5.1 68 141-208 2-80 (237)
73 cd07407 MPP_YHR202W_N Saccharo 98.3 2.4E-05 5.3E-10 70.1 15.5 180 135-328 4-231 (282)
74 COG0622 Predicted phosphoester 98.3 6E-06 1.3E-10 68.1 10.3 63 137-208 2-65 (172)
75 TIGR00282 metallophosphoestera 98.3 5.8E-05 1.3E-09 66.7 16.7 170 137-328 1-181 (266)
76 PRK09453 phosphodiesterase; Pr 98.2 2.6E-06 5.6E-11 71.5 6.3 70 137-208 1-76 (182)
77 PRK09558 ushA bifunctional UDP 98.2 3E-05 6.5E-10 76.4 14.3 186 134-328 32-257 (551)
78 COG0737 UshA 5'-nucleotidase/2 98.2 2.5E-05 5.4E-10 76.4 12.4 183 134-328 24-247 (517)
79 TIGR01530 nadN NAD pyrophospha 98.1 6.4E-05 1.4E-09 73.9 14.4 156 154-328 40-218 (550)
80 cd07391 MPP_PF1019 Pyrococcus 98.1 5E-06 1.1E-10 69.1 5.4 52 156-208 35-88 (172)
81 cd08162 MPP_PhoA_N Synechococc 98.0 4.9E-05 1.1E-09 69.2 10.7 37 278-328 207-244 (313)
82 TIGR00024 SbcD_rel_arch putati 98.0 1.8E-05 3.9E-10 68.5 6.6 70 137-208 15-102 (225)
83 COG1311 HYS2 Archaeal DNA poly 98.0 0.00014 3.1E-09 68.0 12.7 76 134-209 223-322 (481)
84 cd07386 MPP_DNA_pol_II_small_a 97.9 2.4E-05 5.3E-10 68.7 6.4 69 140-208 2-94 (243)
85 PHA02239 putative protein phos 97.9 2.2E-05 4.8E-10 68.4 5.8 68 138-207 2-72 (235)
86 PRK09419 bifunctional 2',3'-cy 97.9 0.00016 3.5E-09 77.2 13.1 48 277-329 233-281 (1163)
87 PRK04036 DNA polymerase II sma 97.9 3.7E-05 8.1E-10 74.5 7.3 76 134-209 241-344 (504)
88 cd07387 MPP_PolD2_C PolD2 (DNA 97.8 0.00039 8.4E-09 61.2 11.8 133 139-273 2-176 (257)
89 PRK00166 apaH diadenosine tetr 97.7 4.7E-05 1E-09 67.9 5.5 65 138-207 2-68 (275)
90 cd07423 MPP_PrpE Bacillus subt 97.7 5.3E-05 1.1E-09 66.2 5.6 67 138-207 2-79 (234)
91 PRK11907 bifunctional 2',3'-cy 97.7 0.00077 1.7E-08 68.5 14.2 184 134-328 113-354 (814)
92 cd07424 MPP_PrpA_PrpB PrpA and 97.7 5.3E-05 1.1E-09 64.9 5.1 64 138-208 2-67 (207)
93 PRK09418 bifunctional 2',3'-cy 97.7 0.00094 2E-08 67.7 14.3 47 277-329 243-290 (780)
94 cd07390 MPP_AQ1575 Aquifex aeo 97.6 7.8E-05 1.7E-09 61.7 5.1 63 140-208 2-82 (168)
95 PRK09968 serine/threonine-spec 97.6 9E-05 2E-09 64.0 4.8 64 137-207 15-80 (218)
96 PRK11439 pphA serine/threonine 97.6 0.00012 2.6E-09 63.2 5.4 73 128-207 8-82 (218)
97 PRK13625 bis(5'-nucleosyl)-tet 97.6 0.00012 2.6E-09 64.4 5.4 67 138-207 2-78 (245)
98 KOG2863 RNA lariat debranching 97.5 0.00033 7.2E-09 62.8 7.6 173 137-327 1-229 (456)
99 cd07413 MPP_PA3087 Pseudomonas 97.5 0.00016 3.5E-09 62.6 5.4 67 139-208 1-76 (222)
100 cd07421 MPP_Rhilphs Rhilph pho 97.5 0.0002 4.4E-09 63.6 5.7 67 138-207 3-79 (304)
101 PRK09420 cpdB bifunctional 2', 97.5 0.0023 5.1E-08 64.0 13.5 56 267-328 207-263 (649)
102 COG4186 Predicted phosphoester 97.4 0.0031 6.7E-08 50.2 10.7 66 138-208 5-86 (186)
103 TIGR01390 CycNucDiestase 2',3' 97.4 0.0028 6E-08 63.3 13.2 45 278-328 195-240 (626)
104 cd07422 MPP_ApaH Escherichia c 97.4 0.00026 5.7E-09 62.4 5.0 64 140-208 2-67 (257)
105 cd00144 MPP_PPP_family phospho 97.3 0.00031 6.6E-09 60.8 4.7 65 141-208 2-68 (225)
106 COG5555 Cytolysin, a secreted 97.3 0.00019 4.2E-09 62.4 3.1 167 162-329 126-335 (392)
107 PF00041 fn3: Fibronectin type 97.3 0.0023 5E-08 45.7 8.4 70 42-121 2-75 (85)
108 TIGR00668 apaH bis(5'-nucleosy 97.1 0.00062 1.3E-08 60.4 5.0 65 138-207 2-68 (279)
109 cd07381 MPP_CapA CapA and rela 97.1 0.0069 1.5E-07 53.0 11.3 59 265-329 162-220 (239)
110 COG1407 Predicted ICC-like pho 97.1 0.0015 3.2E-08 56.2 6.4 71 137-208 20-110 (235)
111 smart00854 PGA_cap Bacterial c 97.1 0.009 2E-07 52.3 11.6 58 267-330 162-219 (239)
112 COG1692 Calcineurin-like phosp 97.0 0.021 4.5E-07 49.1 12.7 171 137-328 1-180 (266)
113 PF13277 YmdB: YmdB-like prote 96.9 0.019 4.1E-07 49.9 11.3 167 140-327 1-175 (253)
114 KOG2310 DNA repair exonuclease 96.8 0.0034 7.4E-08 59.4 6.8 45 134-178 11-68 (646)
115 cd07416 MPP_PP2B PP2B, metallo 96.5 0.0045 9.8E-08 56.1 5.3 68 138-208 44-114 (305)
116 PF09587 PGA_cap: Bacterial ca 96.4 0.046 1E-06 48.2 11.3 61 263-329 169-229 (250)
117 smart00156 PP2Ac Protein phosp 96.4 0.0054 1.2E-07 54.7 5.2 68 138-208 29-99 (271)
118 cd07420 MPP_RdgC Drosophila me 96.2 0.0088 1.9E-07 54.5 5.3 68 138-208 52-123 (321)
119 cd07415 MPP_PP2A_PP4_PP6 PP2A, 96.1 0.0082 1.8E-07 53.9 4.6 68 138-208 43-113 (285)
120 cd07414 MPP_PP1_PPKL PP1, PPKL 96.1 0.008 1.7E-07 54.2 4.5 68 138-208 51-121 (293)
121 cd07418 MPP_PP7 PP7, metalloph 96.0 0.011 2.5E-07 54.8 5.4 69 137-208 66-138 (377)
122 PTZ00239 serine/threonine prot 95.9 0.011 2.5E-07 53.4 4.9 67 139-208 45-114 (303)
123 KOG0196 Tyrosine kinase, EPH ( 95.8 0.034 7.4E-07 55.5 8.0 95 28-133 431-537 (996)
124 PTZ00480 serine/threonine-prot 95.8 0.012 2.6E-07 53.6 4.6 68 138-208 60-130 (320)
125 KOG4419 5' nucleotidase [Nucle 95.8 0.048 1E-06 52.6 8.6 56 261-328 211-269 (602)
126 PTZ00244 serine/threonine-prot 95.7 0.012 2.7E-07 52.9 4.0 68 139-208 54-123 (294)
127 KOG3947 Phosphoesterases [Gene 95.6 0.3 6.4E-06 42.9 12.0 71 133-210 58-128 (305)
128 cd07417 MPP_PP5_C PP5, C-termi 94.7 0.038 8.2E-07 50.4 4.3 69 137-208 60-132 (316)
129 cd07419 MPP_Bsu1_C Arabidopsis 94.7 0.05 1.1E-06 49.6 5.0 21 305-325 242-262 (311)
130 PF04042 DNA_pol_E_B: DNA poly 94.6 0.043 9.4E-07 46.8 4.1 113 139-253 1-136 (209)
131 smart00060 FN3 Fibronectin typ 93.8 0.58 1.3E-05 31.7 8.1 71 43-121 4-76 (83)
132 cd00063 FN3 Fibronectin type 3 93.0 0.94 2E-05 31.6 8.2 70 42-121 3-76 (93)
133 KOG4221 Receptor mediating net 92.3 0.35 7.6E-06 50.6 6.6 82 38-132 614-712 (1381)
134 KOG3513 Neural cell adhesion m 91.8 0.63 1.4E-05 48.4 7.9 75 38-121 818-896 (1051)
135 PF08139 LPAM_1: Prokaryotic m 86.6 0.35 7.5E-06 26.0 0.9 18 1-18 6-24 (25)
136 PHA03376 BARF1; Provisional 84.7 6 0.00013 33.0 7.6 105 1-120 1-105 (221)
137 KOG0372 Serine/threonine speci 84.5 1.8 3.9E-05 37.5 4.6 65 140-208 46-114 (303)
138 PF07353 Uroplakin_II: Uroplak 83.2 6.6 0.00014 31.6 7.0 14 105-118 105-118 (184)
139 PTZ00235 DNA polymerase epsilo 82.1 9.6 0.00021 34.2 8.4 83 126-208 17-122 (291)
140 KOG0371 Serine/threonine prote 81.7 2 4.4E-05 37.5 3.9 65 139-208 62-131 (319)
141 KOG0374 Serine/threonine speci 81.6 1.6 3.4E-05 40.1 3.4 68 138-210 60-133 (331)
142 KOG2476 Uncharacterized conser 78.7 3.8 8.3E-05 38.7 4.9 66 136-205 5-75 (528)
143 KOG4221 Receptor mediating net 78.3 12 0.00025 40.0 8.6 81 42-131 523-611 (1381)
144 KOG3513 Neural cell adhesion m 77.3 8.8 0.00019 40.4 7.5 74 41-120 616-692 (1051)
145 KOG0373 Serine/threonine speci 76.7 5 0.00011 34.2 4.7 64 140-208 49-117 (306)
146 cd07390 MPP_AQ1575 Aquifex aeo 76.5 3 6.5E-05 34.2 3.4 33 281-331 108-140 (168)
147 PF13956 Ibs_toxin: Toxin Ibs, 68.6 4 8.7E-05 19.9 1.3 13 1-13 1-13 (19)
148 COG5633 Predicted periplasmic 68.2 20 0.00043 27.4 5.6 19 1-19 1-19 (123)
149 PRK11627 hypothetical protein; 67.2 17 0.00036 30.6 5.8 19 1-19 1-20 (192)
150 PF01108 Tissue_fac: Tissue fa 67.2 38 0.00083 25.2 7.4 70 42-121 24-98 (107)
151 COG2248 Predicted hydrolase (m 66.9 15 0.00033 32.2 5.5 74 134-208 174-250 (304)
152 PRK13792 lysozyme inhibitor; P 66.5 38 0.00083 26.4 7.2 18 1-18 1-20 (127)
153 KOG0375 Serine-threonine phosp 65.0 8 0.00017 35.5 3.6 68 138-208 89-159 (517)
154 KOG3325 Membrane coat complex 61.5 8.4 0.00018 30.8 2.7 25 306-330 97-121 (183)
155 PF06874 FBPase_2: Firmicute f 61.2 5.3 0.00011 39.5 1.9 45 157-207 179-223 (640)
156 PRK09453 phosphodiesterase; Pr 60.0 9.1 0.0002 31.7 3.0 14 314-327 116-129 (182)
157 PHA03008 hypothetical protein; 59.5 21 0.00045 29.9 4.8 43 282-329 163-205 (234)
158 KOG0196 Tyrosine kinase, EPH ( 59.1 49 0.0011 34.1 8.1 96 20-120 314-416 (996)
159 PF14292 SusE: SusE outer memb 58.8 30 0.00064 26.6 5.5 54 7-66 1-57 (122)
160 KOG4258 Insulin/growth factor 58.5 45 0.00097 34.4 7.8 104 41-145 487-623 (1025)
161 COG2843 PgsA Putative enzyme o 55.5 35 0.00076 31.9 6.2 57 266-329 212-269 (372)
162 PF06291 Lambda_Bor: Bor prote 55.1 12 0.00025 27.7 2.5 24 1-24 1-24 (97)
163 PF13473 Cupredoxin_1: Cupredo 54.3 24 0.00051 26.2 4.1 64 40-121 31-94 (104)
164 PRK09810 entericidin A; Provis 52.4 9.3 0.0002 23.3 1.3 19 1-19 1-21 (41)
165 PRK13883 conjugal transfer pro 49.4 13 0.00029 29.9 2.1 19 1-19 1-19 (151)
166 PF02402 Lysis_col: Lysis prot 48.3 12 0.00026 23.0 1.3 30 1-31 1-32 (46)
167 PF01784 NIF3: NIF3 (NGG1p int 46.4 21 0.00045 31.2 3.1 42 283-326 56-97 (241)
168 PRK10301 hypothetical protein; 46.2 1.4E+02 0.003 23.1 9.6 15 38-52 40-54 (124)
169 cd02856 Glycogen_debranching_e 45.0 31 0.00068 25.5 3.5 24 98-121 43-66 (103)
170 cd02852 Isoamylase_N_term Isoa 45.0 30 0.00065 26.3 3.5 23 99-121 48-70 (119)
171 TIGR03352 VI_chp_3 type VI sec 44.7 30 0.00065 27.7 3.5 16 3-18 2-17 (146)
172 PRK11443 lipoprotein; Provisio 44.3 15 0.00032 28.6 1.6 17 2-18 1-17 (124)
173 COG3855 Fbp Uncharacterized pr 44.2 17 0.00037 34.6 2.3 44 158-207 186-229 (648)
174 PF10179 DUF2369: Uncharacteri 42.7 1.4E+02 0.0029 27.2 7.7 19 103-121 261-279 (300)
175 PF09294 Interfer-bind: Interf 42.7 21 0.00046 26.3 2.3 19 103-121 68-86 (106)
176 cd02853 MTHase_N_term Maltooli 42.0 35 0.00076 24.2 3.3 22 99-121 39-60 (85)
177 TIGR02855 spore_yabG sporulati 41.7 23 0.00049 31.4 2.5 49 265-326 115-164 (283)
178 PF05582 Peptidase_U57: YabG p 41.0 28 0.00061 31.0 3.0 49 265-326 116-165 (287)
179 KOG3818 DNA polymerase epsilon 40.4 93 0.002 29.7 6.4 76 134-209 280-370 (525)
180 PRK10799 metal-binding protein 39.6 66 0.0014 28.2 5.2 43 283-328 59-101 (247)
181 PF10179 DUF2369: Uncharacteri 39.5 27 0.00059 31.5 2.8 19 102-120 15-33 (300)
182 TIGR03000 plancto_dom_1 Planct 39.3 71 0.0015 22.4 4.2 25 97-121 24-48 (75)
183 TIGR00486 YbgI_SA1388 dinuclea 39.1 64 0.0014 28.3 5.1 41 283-326 60-100 (249)
184 PRK13791 lysozyme inhibitor; P 39.1 91 0.002 23.8 5.2 14 5-18 7-20 (113)
185 PF06788 UPF0257: Uncharacteri 39.1 34 0.00074 29.7 3.2 18 1-18 1-18 (236)
186 cd02860 Pullulanase_N_term Pul 38.9 41 0.00089 24.6 3.3 25 97-121 44-68 (100)
187 PF11714 Inhibitor_I53: Thromb 38.8 45 0.00097 22.7 3.0 19 1-19 1-19 (78)
188 TIGR03516 ppisom_GldI peptidyl 36.9 36 0.00078 28.2 3.0 18 1-18 1-18 (177)
189 PRK10449 heat-inducible protei 36.3 22 0.00048 28.2 1.6 19 1-19 1-19 (140)
190 PRK13835 conjugal transfer pro 35.9 33 0.00072 27.3 2.4 19 1-19 1-19 (145)
191 PRK10397 lipoprotein; Provisio 35.7 24 0.00053 27.2 1.6 18 2-19 1-18 (137)
192 TIGR00752 slp outer membrane l 35.5 20 0.00044 29.8 1.3 18 1-18 2-19 (182)
193 PRK09973 putative outer membra 34.8 29 0.00062 25.0 1.7 18 1-18 1-21 (85)
194 PF11153 DUF2931: Protein of u 33.9 24 0.00052 30.2 1.5 18 2-19 1-18 (216)
195 PF10333 Pga1: GPI-Mannosyltra 33.5 69 0.0015 26.7 4.1 33 97-129 61-94 (180)
196 PF05643 DUF799: Putative bact 33.4 28 0.0006 29.8 1.8 19 1-19 1-19 (215)
197 PF14054 DUF4249: Domain of un 33.3 2.8E+02 0.006 24.6 8.5 19 108-126 95-114 (298)
198 KOG1382 Multiple inositol poly 33.1 55 0.0012 31.3 3.8 50 1-50 1-70 (467)
199 PRK11449 putative deoxyribonuc 32.6 48 0.001 29.3 3.3 139 152-329 22-160 (258)
200 COG3426 Butyrate kinase [Energ 32.6 55 0.0012 29.4 3.5 42 160-208 294-336 (358)
201 cd01987 USP_OKCHK USP domain i 31.0 2.2E+02 0.0048 21.1 7.2 23 305-327 74-96 (124)
202 PRK10425 DNase TatD; Provision 30.8 54 0.0012 28.9 3.3 140 152-331 18-157 (258)
203 COG4618 ArpD ABC-type protease 30.8 56 0.0012 31.9 3.5 45 243-290 488-533 (580)
204 PRK11372 lysozyme inhibitor; P 29.9 1.5E+02 0.0033 22.4 5.1 16 3-18 4-19 (109)
205 COG5510 Predicted small secret 29.5 35 0.00076 21.0 1.2 14 6-19 11-24 (44)
206 cd04502 SGNH_hydrolase_like_7 28.2 1.7E+02 0.0036 23.4 5.6 11 160-170 48-58 (171)
207 PF02922 CBM_48: Carbohydrate- 27.8 1.2E+02 0.0025 21.2 4.1 26 97-122 46-73 (85)
208 PRK10081 entericidin B membran 26.0 49 0.0011 20.9 1.5 6 13-18 18-23 (48)
209 PF15240 Pro-rich: Proline-ric 26.0 38 0.00083 28.0 1.3 15 5-19 2-16 (179)
210 COG1930 CbiN ABC-type cobalt t 25.9 57 0.0012 23.6 2.0 21 6-26 15-35 (97)
211 PRK00207 sulfur transfer compl 25.4 2.9E+02 0.0063 21.4 6.2 60 261-324 18-80 (128)
212 COG1922 WecG Teichoic acid bio 25.3 2.1E+02 0.0046 25.2 5.9 50 261-323 118-168 (253)
213 COG3910 Predicted ATPase [Gene 24.6 1E+02 0.0022 26.2 3.5 42 248-291 149-190 (233)
214 KOG2310 DNA repair exonuclease 23.9 57 0.0012 31.9 2.2 15 194-208 119-133 (646)
215 PF03808 Glyco_tran_WecB: Glyc 23.9 2.9E+02 0.0062 22.5 6.3 50 261-323 58-108 (172)
216 TIGR02722 lp_ uncharacterized 23.4 1E+02 0.0022 25.7 3.5 15 5-19 6-20 (189)
217 PF03032 Brevenin: Brevenin/es 22.9 36 0.00078 21.4 0.5 13 6-18 10-22 (46)
218 PF09949 DUF2183: Uncharacteri 22.7 1.2E+02 0.0026 22.5 3.4 28 136-165 64-91 (100)
219 PF10731 Anophelin: Thrombin i 22.7 66 0.0014 21.3 1.7 25 1-25 1-28 (65)
220 PRK10812 putative DNAse; Provi 22.6 92 0.002 27.6 3.2 135 152-328 23-157 (265)
221 PF11777 DUF3316: Protein of u 22.3 60 0.0013 24.7 1.7 12 1-12 1-12 (114)
222 TIGR03012 sulf_tusD_dsrE sulfu 22.2 3.7E+02 0.0081 20.7 7.0 59 261-323 17-78 (127)
223 KOG4222 Axon guidance receptor 21.9 1.3E+02 0.0029 32.3 4.5 23 99-121 804-826 (1281)
224 PF00072 Response_reg: Respons 21.4 2.1E+02 0.0046 20.4 4.7 52 151-207 32-83 (112)
225 PF07355 GRDB: Glycine/sarcosi 20.4 1E+02 0.0023 28.4 3.1 30 302-331 66-95 (349)
226 TIGR02801 tolR TolR protein. T 20.4 2.5E+02 0.0055 21.5 5.0 15 21-37 26-40 (129)
227 cd02850 Cellulase_N_term Cellu 20.3 1.6E+02 0.0035 20.9 3.6 23 99-121 55-78 (86)
228 PF01764 Lipase_3: Lipase (cla 20.3 1.1E+02 0.0023 23.5 2.9 23 303-325 49-72 (140)
229 PRK12407 flgH flagellar basal 20.3 66 0.0014 27.8 1.7 19 1-19 1-19 (221)
230 PRK10781 rcsF outer membrane l 20.2 66 0.0014 25.3 1.6 18 2-19 1-18 (133)
231 cd06533 Glyco_transf_WecG_TagA 20.1 2.5E+02 0.0054 22.9 5.1 51 261-323 56-106 (171)
No 1
>PLN02533 probable purple acid phosphatase
Probab=100.00 E-value=6.7e-66 Score=483.77 Aligned_cols=331 Identities=58% Similarity=1.068 Sum_probs=279.7
Q ss_pred cchhhHHHHHHHHhcCCCCccccCCCCCCccc-cCCCCCCCCCceEEEEecCCCcEEEEEEcCCCCCCcEEEEeccCCCC
Q 019979 2 ELKFVLTAFVFISATVTTAEYIRPQPRRTLEF-PWDPKPSSHPQQVHISLAGDSHMRVTWITDDESSPSVVEYGTSPGGY 80 (333)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~v~l~~~~~~~~~v~W~t~~~~~~~~v~y~~~~~~~ 80 (333)
..-|.++.++++.+...+++|+|+.+...+.. +.+..+...|+||||++++.++|+|+|.|.+. ..+.|+||++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~qvhls~~~~~~m~V~W~T~~~-~~~~V~yG~~~~~l 80 (427)
T PLN02533 2 VKVLGLVAILLIVLAGNVLSYDRPGTRKNLVIHPDNEDDPTHPDQVHISLVGPDKMRISWITQDS-IPPSVVYGTVSGKY 80 (427)
T ss_pred hhhHHHHHHHHhhhccCcccccCCCccccccccccCCCCCCCCceEEEEEcCCCeEEEEEECCCC-CCCEEEEecCCCCC
Confidence 33344444444444455689999998886654 33457888999999999999999999999964 56899999999888
Q ss_pred CeeEEeeEEEEeee-eeecCeEEEEEeCCCCCCCEEEEEeCc--CCCeeEEECCCCCCCeeEEEEeecCCCCChhhHHHH
Q 019979 81 NCGAEGESTSYRYL-FYRSGKIHHTVIGPLEHDTVYFYRCGR--QGPEFEFKTPPAQFPITFAVAGDLGQTGWTKSTLDH 157 (333)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~p~t~Y~Y~v~~--~s~~~~F~t~p~~~~~~f~~~gD~~~~~~~~~~~~~ 157 (333)
+.++.|.+.+|++. ...++++|+|+|+||+|||+|+|||+. +++.++|+|+|...+++|+++||+|...+...+++.
T Consensus 81 ~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p~T~Y~Yrvg~~~~s~~~~F~T~p~~~~~~f~v~GDlG~~~~~~~tl~~ 160 (427)
T PLN02533 81 EGSANGTSSSYHYLLIYRSGQINDVVIGPLKPNTVYYYKCGGPSSTQEFSFRTPPSKFPIKFAVSGDLGTSEWTKSTLEH 160 (427)
T ss_pred cceEEEEEEEEeccccccCCeEEEEEeCCCCCCCEEEEEECCCCCccceEEECCCCCCCeEEEEEEeCCCCcccHHHHHH
Confidence 88888887777642 245789999999999999999999995 468899999998889999999999987777788999
Q ss_pred hhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCCCCCc-cccccccccccccCcCCCCCCCC
Q 019979 158 IGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLI-MDAFQSYNARWKMPFEESGSNSN 236 (333)
Q Consensus 158 i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~ 236 (333)
+.+.+|||||++||++|++..+..|+.|.+.++++.+.+|+|+++||||....+.. ...+..|.++|.+|.++.+...+
T Consensus 161 i~~~~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s~~P~m~~~GNHE~~~~~~~~~~~f~~y~~rf~mP~~~~g~~~~ 240 (427)
T PLN02533 161 VSKWDYDVFILPGDLSYANFYQPLWDTFGRLVQPLASQRPWMVTHGNHELEKIPILHPEKFTAYNARWRMPFEESGSTSN 240 (427)
T ss_pred HHhcCCCEEEEcCccccccchHHHHHHHHHHhhhHhhcCceEEeCccccccccccccCcCccchhhcccCCccccCCCCC
Confidence 98899999999999999888788999999999999888999999999999643321 24577888999999876666678
Q ss_pred ceEEEEeCCEEEEEEeccCCCCCCHHHHHHHHHHhhcccCCCCCeEEEEeccccccCCCCCCCC--ChhHHHHHHHHHHh
Q 019979 237 LYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGE--GDGMMAIMEPLLYA 314 (333)
Q Consensus 237 ~~ys~~~g~v~fi~lds~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~--~~~~~~~l~~l~~~ 314 (333)
.||+|++|++|||+||++.++....+|++||+++|++.++++.+|+|+++|+|+|++...+.+. ...+++.|+++|++
T Consensus 241 ~yYSfd~g~vhfI~Lds~~~~~~~~~Q~~WLe~dL~~~~r~~~pwiIv~~H~P~y~s~~~~~~~~~~~~~r~~le~Ll~~ 320 (427)
T PLN02533 241 LYYSFNVYGVHIIMLGSYTDFEPGSEQYQWLENNLKKIDRKTTPWVVAVVHAPWYNSNEAHQGEKESVGMKESMETLLYK 320 (427)
T ss_pred ceEEEEECCEEEEEEeCCccccCchHHHHHHHHHHHhhcccCCCEEEEEeCCCeeecccccCCcchhHHHHHHHHHHHHH
Confidence 9999999999999999998887789999999999999877678999999999999876544333 23467899999999
Q ss_pred CCCcEEEecCccccccccC
Q 019979 315 ASVDLVLAGHVHAYERSVR 333 (333)
Q Consensus 315 ~~v~lvl~GH~H~y~R~~~ 333 (333)
++||++|+||+|.|||++|
T Consensus 321 ~~VdlvlsGH~H~YeR~~p 339 (427)
T PLN02533 321 ARVDLVFAGHVHAYERFDR 339 (427)
T ss_pred hCCcEEEecceeccccccc
Confidence 9999999999999999875
No 2
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-60 Score=431.40 Aligned_cols=293 Identities=43% Similarity=0.688 Sum_probs=249.5
Q ss_pred CCCCCCceEEEEecC-CCcEEEEEEcCCCCCCcEEEEeccCCCCC-----eeEEeeEEEEeeeeeecCeEEEEEeCCCCC
Q 019979 38 KPSSHPQQVHISLAG-DSHMRVTWITDDESSPSVVEYGTSPGGYN-----CGAEGESTSYRYLFYRSGKIHHTVIGPLEH 111 (333)
Q Consensus 38 ~~~~~p~~v~l~~~~-~~~~~v~W~t~~~~~~~~v~y~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p 111 (333)
.....|+||||++++ .++|+|+|.|.+. ....|+|+...+... ..+.+.+..|.......+++|+|+|++|+|
T Consensus 40 ~~~~~peQvhlS~~~~~~~m~VswvT~~~-~~~~V~Yg~~~~~~~~~~~~~~~~~~~~~y~~~~~~sg~ih~~~~~~L~~ 118 (452)
T KOG1378|consen 40 SVVNSPEQVHLSFTDNLNEMRVSWVTGDG-EENVVRYGEVKDKLDNSAARGMTEAWTDGYANGWRDSGYIHDAVMKNLEP 118 (452)
T ss_pred ccCCCCCeEEEeccCCCCcEEEEEeCCCC-CCceEEEeecCCCccccccccceEEEecccccccceeeeEeeeeecCCCC
Confidence 455679999999998 5599999999964 347899998765422 223333333444446789999999999999
Q ss_pred CCEEEEEeCcC---CCeeEEECCCC-CCCeeEEEEeecCCCCChhhHHHHhhcC-CCCeEEccccccccccch-hhHHHH
Q 019979 112 DTVYFYRCGRQ---GPEFEFKTPPA-QFPITFAVAGDLGQTGWTKSTLDHIGQC-KYDVHLLPGDLSYADYMQ-HRWDTF 185 (333)
Q Consensus 112 ~t~Y~Y~v~~~---s~~~~F~t~p~-~~~~~f~~~gD~~~~~~~~~~~~~i~~~-~~d~vl~~GDl~~~~~~~-~~~~~~ 185 (333)
+|+|+|+||+. |+.|+|+|+|. ..+.+|+++||++.......++....+. ++|+|||+|||+|+++.. ..||.|
T Consensus 119 ~t~YyY~~Gs~~~wS~~f~F~t~p~~~~~~~~~i~GDlG~~~~~~s~~~~~~~~~k~d~vlhiGDlsYa~~~~n~~wD~f 198 (452)
T KOG1378|consen 119 NTRYYYQVGSDLKWSEIFSFKTPPGQDSPTRAAIFGDMGCTEPYTSTLRNQEENLKPDAVLHIGDLSYAMGYSNWQWDEF 198 (452)
T ss_pred CceEEEEeCCCCCcccceEeECCCCccCceeEEEEccccccccccchHhHHhcccCCcEEEEecchhhcCCCCccchHHH
Confidence 99999999974 68999999995 5899999999999887766666666544 599999999999999887 699999
Q ss_pred HHhhhhhhcCCceEEccCCCCCCCCCCccccccccccccccCcCCCCCCCCceEEEEeCCEEEEEEeccCCC--CCCHHH
Q 019979 186 GELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADY--DEYSDQ 263 (333)
Q Consensus 186 ~~~~~~l~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~--~~~~~q 263 (333)
.++++++++.+|+|++.||||....+. ..|..|..+|.||.++.++..+.||||++|++|||+|+|+.++ ....+|
T Consensus 199 ~r~vEp~As~vPymv~~GNHE~d~~~~--~~F~~y~~Rf~mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~~~~~~~~Q 276 (452)
T KOG1378|consen 199 GRQVEPIASYVPYMVCSGNHEIDWPPQ--PCFVPYSARFNMPGNSSESDSNLYYSFDVGGVHFVVLSTETYYNFLKGTAQ 276 (452)
T ss_pred HhhhhhhhccCceEEecccccccCCCc--ccccccceeeccCCCcCCCCCceeEEEeeccEEEEEEeccccccccccchH
Confidence 999999999999999999999976554 3689999999999988887778999999999999999998875 346899
Q ss_pred HHHHHHHhhcccCCCCCeEEEEeccccccCCCC-CCCCCh--hHHHHHHHHHHhCCCcEEEecCccccccccC
Q 019979 264 YRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEA-HQGEGD--GMMAIMEPLLYAASVDLVLAGHVHAYERSVR 333 (333)
Q Consensus 264 ~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~-~~~~~~--~~~~~l~~l~~~~~v~lvl~GH~H~y~R~~~ 333 (333)
.+||+++|+++++++.||+|++.|.|+|++... +..++. .++..|+++|.+++||++|.||.|+|||++|
T Consensus 277 Y~WL~~dL~~v~r~~tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~LE~l~~~~~VDvvf~GHvH~YER~~p 349 (452)
T KOG1378|consen 277 YQWLERDLASVDRKKTPWLIVQGHRPMYCSSNDAHYREGEFESMREGLEPLFVKYKVDVVFWGHVHRYERFCP 349 (452)
T ss_pred HHHHHHHHHHhcccCCCeEEEEecccceecCCchhhccCcchhhHHHHHHHHHHhceeEEEeccceehhccch
Confidence 999999999998855899999999999998874 444444 6788999999999999999999999999987
No 3
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=100.00 E-value=3e-36 Score=272.99 Aligned_cols=199 Identities=48% Similarity=0.812 Sum_probs=155.4
Q ss_pred CCCeeEEEEeecCCC-CChhhHHHHhhc--CCCCeEEccccccccccch--hhHHHHHHhhhhhhcCCceEEccCCCCCC
Q 019979 134 QFPITFAVAGDLGQT-GWTKSTLDHIGQ--CKYDVHLLPGDLSYADYMQ--HRWDTFGELVQPLASARPWMVTQGNHEKE 208 (333)
Q Consensus 134 ~~~~~f~~~gD~~~~-~~~~~~~~~i~~--~~~d~vl~~GDl~~~~~~~--~~~~~~~~~~~~l~~~~P~~~~~GNHD~~ 208 (333)
..++||+++||+|.. ....++++.+.+ .+|||||++||++|+.+.. .+|+.|++.++++...+|+++++||||..
T Consensus 2 ~~~~~f~v~gD~~~~~~~~~~~~~~l~~~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~ 81 (294)
T cd00839 2 DTPFKFAVFGDMGQNTNNSTNTLDHLEKELGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLASYVPYMVTPGNHEAD 81 (294)
T ss_pred CCcEEEEEEEECCCCCCCcHHHHHHHHhccCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHhcCCcEEcCcccccc
Confidence 468999999999863 445778888865 7999999999999877654 78999999999998889999999999996
Q ss_pred CCCCccccccccccccccCcCCCCCCCCceEEEEeCCEEEEEEeccCCC---CCCHHHHHHHHHHhhcccCCCCCeEEEE
Q 019979 209 SIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADY---DEYSDQYRWLKDDLSKVDRKKTPWLLVL 285 (333)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~---~~~~~q~~WL~~~L~~~~~~~~~~~iv~ 285 (333)
..... .....+..++.++........+.||+|++|+++||+||++... ....+|++||+++|+++++++.+|+|++
T Consensus 82 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~ 160 (294)
T cd00839 82 YNFSF-YKIKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFYGDGPGSPQYDWLEADLAKVDRSKTPWIIVM 160 (294)
T ss_pred cCCCC-cccccccccccccCCCCCCCCCceEEEeeCCEEEEEEecccccccCCCCcHHHHHHHHHHHHhcccCCCeEEEE
Confidence 43221 0011111112233323333457899999999999999998654 4578999999999999866567899999
Q ss_pred eccccccCCCCCCC--CChhHHHHHHHHHHhCCCcEEEecCccccccccC
Q 019979 286 LHVPWYNSNEAHQG--EGDGMMAIMEPLLYAASVDLVLAGHVHAYERSVR 333 (333)
Q Consensus 286 ~H~P~~~~~~~~~~--~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~R~~~ 333 (333)
+|+|+++....... .....++.|.++|++++|+++|+||.|.|+|++|
T Consensus 161 ~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p 210 (294)
T cd00839 161 GHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVLSGHVHAYERTCP 210 (294)
T ss_pred eccCcEecCccccccchhHHHHHHHHHHHHHhCCCEEEEccceeeEeech
Confidence 99999986553322 2345788999999999999999999999999875
No 4
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.96 E-value=2e-28 Score=219.88 Aligned_cols=183 Identities=26% Similarity=0.419 Sum_probs=128.9
Q ss_pred eeEEEEeecCCC-CCh-hhHH----HHhhcCCCCeEEccccccccccch----hhH-HHHHHhhhhhhcCCceEEccCCC
Q 019979 137 ITFAVAGDLGQT-GWT-KSTL----DHIGQCKYDVHLLPGDLSYADYMQ----HRW-DTFGELVQPLASARPWMVTQGNH 205 (333)
Q Consensus 137 ~~f~~~gD~~~~-~~~-~~~~----~~i~~~~~d~vl~~GDl~~~~~~~----~~~-~~~~~~~~~l~~~~P~~~~~GNH 205 (333)
++|+++||++.. ... .++. +.+.+.+|||||++||++|.++.. ..| +.+.+.+..+...+|+++++|||
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNH 80 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPSLQVPWYLVLGNH 80 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchhhcCCeEEecCCc
Confidence 489999999975 222 2222 223357999999999999876531 233 33445555444569999999999
Q ss_pred CCCCCCCccccccc--cccccccCcCCCCCCCCceEEEEeC------CEEEEEEeccCCC---------------CCCHH
Q 019979 206 EKESIPLIMDAFQS--YNARWKMPFEESGSNSNLYYSFDVA------GAHLIMLGSYADY---------------DEYSD 262 (333)
Q Consensus 206 D~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~ys~~~g------~v~fi~lds~~~~---------------~~~~~ 262 (333)
|..........+.. +..+|.+| ..||+|+++ +++||+|||.... ....+
T Consensus 81 D~~~~~~~~~~~~~~~~~~~~~~~--------~~~y~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~~~~ 152 (277)
T cd07378 81 DYSGNVSAQIDYTKRPNSPRWTMP--------AYYYRVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKLAEE 152 (277)
T ss_pred ccCCCchheeehhccCCCCCccCc--------chheEEEeecCCCCCEEEEEEEeChhHcCccccccccccCcchhhHHH
Confidence 99643211111111 12223333 578999998 7999999996421 12589
Q ss_pred HHHHHHHHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCcccccccc
Q 019979 263 QYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSV 332 (333)
Q Consensus 263 q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~R~~ 332 (333)
|++||++.|+++. .+|+||++|+|+++..... .....++.|.+++++++|+++|+||.|.+++..
T Consensus 153 Q~~wL~~~L~~~~---~~~~iv~~H~P~~~~~~~~--~~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~ 217 (277)
T cd07378 153 QLAWLEKTLAAST---ADWKIVVGHHPIYSSGEHG--PTSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIK 217 (277)
T ss_pred HHHHHHHHHHhcC---CCeEEEEeCccceeCCCCC--CcHHHHHHHHHHHHHcCCCEEEeCCcccceeee
Confidence 9999999999874 3799999999998754322 224567899999999999999999999998864
No 5
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.96 E-value=5.7e-28 Score=215.15 Aligned_cols=187 Identities=21% Similarity=0.335 Sum_probs=135.2
Q ss_pred CCCeeEEEEeecCCCCC-----------------hhhHHHHhhcC--CCCeEEccccccccccch----hhHHHHHHhhh
Q 019979 134 QFPITFAVAGDLGQTGW-----------------TKSTLDHIGQC--KYDVHLLPGDLSYADYMQ----HRWDTFGELVQ 190 (333)
Q Consensus 134 ~~~~~f~~~gD~~~~~~-----------------~~~~~~~i~~~--~~d~vl~~GDl~~~~~~~----~~~~~~~~~~~ 190 (333)
+++++|+++||+|.+.. .+.+++.+.+. +||+||++||+++.+... .+|+.+.+.++
T Consensus 2 ~~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T cd07395 2 SGPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLS 81 (262)
T ss_pred CCCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHh
Confidence 46899999999998621 12345555554 999999999999865542 34566666666
Q ss_pred hhhcCCceEEccCCCCCCCCCCccccccccccccccCcCCCCCCCCceEEEEeCCEEEEEEeccCCC------CCCHHHH
Q 019979 191 PLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADY------DEYSDQY 264 (333)
Q Consensus 191 ~l~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~------~~~~~q~ 264 (333)
.+...+|+++++||||....+. ......|...| ++.+|+|++|+++||+||+.... ....+|+
T Consensus 82 ~~~~~vp~~~i~GNHD~~~~~~-~~~~~~f~~~~----------g~~~y~~~~~~~~~i~lds~~~~~~~~~~~~~~~ql 150 (262)
T cd07395 82 LLDPDIPLVCVCGNHDVGNTPT-EESIKDYRDVF----------GDDYFSFWVGGVFFIVLNSQLFFDPSEVPELAQAQD 150 (262)
T ss_pred hccCCCcEEEeCCCCCCCCCCC-hhHHHHHHHHh----------CCcceEEEECCEEEEEeccccccCccccccchHHHH
Confidence 6655699999999999954322 11222232222 24689999999999999995422 1247999
Q ss_pred HHHHHHhhcccCCCCCeEEEEeccccccCCCCCC----CCChhHHHHHHHHHHhCCCcEEEecCccccccc
Q 019979 265 RWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQ----GEGDGMMAIMEPLLYAASVDLVLAGHVHAYERS 331 (333)
Q Consensus 265 ~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~----~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~R~ 331 (333)
+||+++|+++++++.+++||++|+|++....... ......+++|.++|++++|+++||||.|.+.+.
T Consensus 151 ~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~~ 221 (262)
T cd07395 151 VWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRNAGG 221 (262)
T ss_pred HHHHHHHHHHHhccCCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECccccCCce
Confidence 9999999998643556899999999985433211 112346789999999999999999999988753
No 6
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.96 E-value=1.2e-27 Score=218.25 Aligned_cols=187 Identities=18% Similarity=0.279 Sum_probs=133.4
Q ss_pred CCCeeEEEEeecCCCCChhhHHHH-h----hcCCCCeEEccccccccccc----hhhHHH-HHHhhhhhh--cCCceEEc
Q 019979 134 QFPITFAVAGDLGQTGWTKSTLDH-I----GQCKYDVHLLPGDLSYADYM----QHRWDT-FGELVQPLA--SARPWMVT 201 (333)
Q Consensus 134 ~~~~~f~~~gD~~~~~~~~~~~~~-i----~~~~~d~vl~~GDl~~~~~~----~~~~~~-~~~~~~~l~--~~~P~~~~ 201 (333)
...++|+++||+|.+...+..+++ | ++.++||||.+||+.+ ++. +..|+. |.+...... ..+||+++
T Consensus 24 ~~~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~~~~FVls~GDNF~-~Gv~sv~Dp~f~~~FE~vY~~~s~~L~~Pwy~v 102 (394)
T PTZ00422 24 KAQLRFASLGNWGTGSKQQKLVASYLKQYAKNERVTFLVSPGSNFP-GGVDGLNDPKWKHCFENVYSEESGDMQIPFFTV 102 (394)
T ss_pred CCeEEEEEEecCCCCchhHHHHHHHHHHHHHhCCCCEEEECCcccc-CCCCCccchhHHhhHhhhccCcchhhCCCeEEe
Confidence 788999999999976555544432 3 3779999999999984 433 455655 333333322 34899999
Q ss_pred cCCCCCCCCCCcccc-cc------------------ccccccccCcCCCCCCCCceEEE----Ee-------------CC
Q 019979 202 QGNHEKESIPLIMDA-FQ------------------SYNARWKMPFEESGSNSNLYYSF----DV-------------AG 245 (333)
Q Consensus 202 ~GNHD~~~~~~~~~~-~~------------------~~~~~~~~p~~~~~~~~~~~ys~----~~-------------g~ 245 (333)
+||||+.++...+-. +. ....+|.||. .||.+ .. ..
T Consensus 103 LGNHDy~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~--------~yY~~~~~f~~~~~~~~~~~~~~~~~ 174 (394)
T PTZ00422 103 LGQADWDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPN--------YWYHYFTHFTDTSGPSLLKSGHKDMS 174 (394)
T ss_pred CCcccccCCchhhhccccccccccccccccccccccccCCCccCCc--------hhheeeeeeecccccccccccCCCCE
Confidence 999999654432111 10 1135777774 67754 21 12
Q ss_pred EEEEEEeccCC-----CC-CCHHHHHHHHHHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhCCCcE
Q 019979 246 AHLIMLGSYAD-----YD-EYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDL 319 (333)
Q Consensus 246 v~fi~lds~~~-----~~-~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~l 319 (333)
+.||++||..- +. ....|++||+++|+.+. +.++|+||++|||+|+++.. +....++..|+|+|++|+||+
T Consensus 175 v~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~a~-k~a~WkIVvGHhPIySsG~h--g~~~~L~~~L~PLL~ky~Vdl 251 (394)
T PTZ00422 175 VAFIFIDTWILSSSFPYKKVSERAWQDLKATLEYAP-KIADYIIVVGDKPIYSSGSS--KGDSYLSYYLLPLLKDAQVDL 251 (394)
T ss_pred EEEEEEECchhcccCCccccCHHHHHHHHHHHHhhc-cCCCeEEEEecCceeecCCC--CCCHHHHHHHHHHHHHcCcCE
Confidence 89999999521 11 24789999999997654 36789999999999988653 333457889999999999999
Q ss_pred EEecCcccccccc
Q 019979 320 VLAGHVHAYERSV 332 (333)
Q Consensus 320 vl~GH~H~y~R~~ 332 (333)
+|+||+|+|||..
T Consensus 252 YisGHDH~lq~i~ 264 (394)
T PTZ00422 252 YISGYDRNMEVLT 264 (394)
T ss_pred EEEccccceEEec
Confidence 9999999999864
No 7
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.93 E-value=6.4e-25 Score=195.77 Aligned_cols=180 Identities=18% Similarity=0.226 Sum_probs=125.0
Q ss_pred eeEEEEeecCCCCC--------------hhhHHHHhhcCCCCeEEccccccccccc--hhhHHHHHHhhhhhhcCCceEE
Q 019979 137 ITFAVAGDLGQTGW--------------TKSTLDHIGQCKYDVHLLPGDLSYADYM--QHRWDTFGELVQPLASARPWMV 200 (333)
Q Consensus 137 ~~f~~~gD~~~~~~--------------~~~~~~~i~~~~~d~vl~~GDl~~~~~~--~~~~~~~~~~~~~l~~~~P~~~ 200 (333)
|||+++||+|.... ..++++.+++.+||+||++||+++.+.. ...|+.+.+.+..+. +|+++
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~--~p~~~ 78 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDRLK--GPVHH 78 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHhcC--CCEEE
Confidence 69999999995431 1345667777789999999999975542 145555555555543 89999
Q ss_pred ccCCCCCCCCCCccccccccccccccCcCCCCCCCCceEEEEeCCEEEEEEeccCC------------------------
Q 019979 201 TQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYAD------------------------ 256 (333)
Q Consensus 201 ~~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~------------------------ 256 (333)
++||||...... .. +...+ ....+..||+|+.++++||+||+...
T Consensus 79 v~GNHD~~~~~~--~~---~~~~~------~~~~~~~yysf~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (267)
T cd07396 79 VLGNHDLYNPSR--EY---LLLYT------LLGLGAPYYSFSPGGIRFIVLDGYDISALGRPEDTPKAENADDNSNLGLY 147 (267)
T ss_pred ecCccccccccH--hh---hhccc------ccCCCCceEEEecCCcEEEEEeCCccccccCCCCChhhhhHHHhchhhhh
Confidence 999999953221 00 00000 11124679999999999999999531
Q ss_pred ----------CCCCHHHHHHHHHHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhC-CCcEEEecCc
Q 019979 257 ----------YDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAA-SVDLVLAGHV 325 (333)
Q Consensus 257 ----------~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~v~lvl~GH~ 325 (333)
.....+|++||++.|+++.. +..++||++|+|++...... ......++.+.++++++ +|+++|+||+
T Consensus 148 ~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~-~~~~viV~~Hhp~~~~~~~~-~~~~~~~~~~~~ll~~~~~V~~v~~GH~ 225 (267)
T cd07396 148 LSEPRFVDWNGGIGEEQLQWLRNELQEADA-NGEKVIIFSHFPLHPESTSP-HGLLWNHEEVLSILRAYGCVKACISGHD 225 (267)
T ss_pred ccCccceeccCcCCHHHHHHHHHHHHHHHh-cCCeEEEEEeccCCCCCCCc-cccccCHHHHHHHHHhCCCEEEEEcCCc
Confidence 01247999999999998753 22458999999987644311 11111357889999996 8999999999
Q ss_pred cccccc
Q 019979 326 HAYERS 331 (333)
Q Consensus 326 H~y~R~ 331 (333)
|.+...
T Consensus 226 H~~~~~ 231 (267)
T cd07396 226 HEGGYA 231 (267)
T ss_pred CCCCcc
Confidence 998643
No 8
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=99.93 E-value=7.1e-24 Score=202.76 Aligned_cols=228 Identities=21% Similarity=0.305 Sum_probs=124.7
Q ss_pred eecCeEEEEEeCCCCCCCEEEEEeCc-----CCCeeEEECCCC--CCCeeEEEEeecCCCCChhhHHHHhhc-CCCCeEE
Q 019979 96 YRSGKIHHTVIGPLEHDTVYFYRCGR-----QGPEFEFKTPPA--QFPITFAVAGDLGQTGWTKSTLDHIGQ-CKYDVHL 167 (333)
Q Consensus 96 ~~~~~~~~~~l~~L~p~t~Y~Y~v~~-----~s~~~~F~t~p~--~~~~~f~~~gD~~~~~~~~~~~~~i~~-~~~d~vl 167 (333)
....+..++.|+||+|+|+|+||+.. .+..++|+|+|. ...+||+++||.+.......+++.+.+ .+|||+|
T Consensus 58 ~~~d~t~~v~v~gL~p~t~Y~Y~~~~~~~~~~s~~g~~rT~p~~~~~~~r~a~~SC~~~~~~~~~~~~~~a~~~~~D~~l 137 (453)
T PF09423_consen 58 AERDFTVKVDVTGLQPGTRYYYRFVVDGGGQTSPVGRFRTAPDGDPDPFRFAFGSCQNYEDGYFPAYRRIAERDDPDFVL 137 (453)
T ss_dssp GGGTTEEEEEE-S--TT-EEEEEEEE--TTEE---EEEE--TT-----EEEEEE----CCC---HHHHHHTT-S--SEEE
T ss_pred cCCCeEeecccCCCCCCceEEEEEEEecCCCCCCceEEEcCCCCCCCceEEEEECCCCcccChHHHHHhhhccCCCcEEE
Confidence 35678999999999999999999865 267899999986 357999999999765444678888877 6999999
Q ss_pred ccccccccccc--------------------hh---h----HHHHH--HhhhhhhcCCceEEccCCCCCCCCCCcc----
Q 019979 168 LPGDLSYADYM--------------------QH---R----WDTFG--ELVQPLASARPWMVTQGNHEKESIPLIM---- 214 (333)
Q Consensus 168 ~~GDl~~~~~~--------------------~~---~----~~~~~--~~~~~l~~~~P~~~~~GNHD~~~~~~~~---- 214 (333)
++||.+|.+.. .. . |..+. ..++.+.+.+|+++++.+||+.++....
T Consensus 138 ~lGD~IY~d~~~~~~~~~~~~~~r~~~p~~~~~~l~~yR~~y~~~~~~p~l~~~~~~~P~~~iwDDHdi~nn~~~~~~~~ 217 (453)
T PF09423_consen 138 HLGDQIYEDGGGGYGNLSRRPIGRAPEPAHEAETLDDYRRRYRQYRSDPDLRRLHANVPWIMIWDDHDIGNNWWGDGAEN 217 (453)
T ss_dssp E-S-SS----TTSS--TT---S-----SSSS--SHHHHHHHHHHHHT-HHHHHHHHHSEEEE---STTTSTT-BTTB-ST
T ss_pred EeCCeeeccCCcccccccccccccccccccccccHHHHHHHHHHHcCCHHHHHHhhcccEEEEccCceecccccCCcccc
Confidence 99999998752 00 1 11111 2456666779999999999996443210
Q ss_pred -------------ccccccccccccCcCC---CCCCCCceEEEEeCC-EEEEEEeccCCCC-------------------
Q 019979 215 -------------DAFQSYNARWKMPFEE---SGSNSNLYYSFDVAG-AHLIMLGSYADYD------------------- 258 (333)
Q Consensus 215 -------------~~~~~~~~~~~~p~~~---~~~~~~~~ys~~~g~-v~fi~lds~~~~~------------------- 258 (333)
.....|.+. +|... .+.....|++|.+|+ +.|++||+....+
T Consensus 218 ~~~~~~~~~~~~~~a~~ay~e~--~p~r~~~~~~~~~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~ 295 (453)
T PF09423_consen 218 HQDTSGDFQDRRRAAYQAYFEY--QPVRNPDPPGDQGRIYRSFRYGDLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSR 295 (453)
T ss_dssp T---HHHHHHHHHHHHHHHHHH--S---GGG-BTTB----EEEEETTTEEEEE--SSSS----CCCSSEE--HHHH-TT-
T ss_pred ccccccchHHHHHHHHHHHHhh--cCccCCCccCCCCceEEEEecCCceeEEEEechhccccccccccccccccccCCcc
Confidence 011122221 22211 112346789999999 9999999953211
Q ss_pred --CCHHHHHHHHHHhhcccCCCCCeEEEEeccccccCCCC------------CCCCChhHHHHHHHHHHhCCCc--EEEe
Q 019979 259 --EYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEA------------HQGEGDGMMAIMEPLLYAASVD--LVLA 322 (333)
Q Consensus 259 --~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~------------~~~~~~~~~~~l~~l~~~~~v~--lvl~ 322 (333)
.+.+|++||++.|++. .++|+|+..-.|+...... |.+ -...|++|.++|++.++. ++|+
T Consensus 296 ~mLG~~Q~~wL~~~L~~s---~a~~kvi~s~v~~~~~~~~~~~~~~~~~~d~W~g-~~~er~~Ll~~l~~~~~~~vV~LS 371 (453)
T PF09423_consen 296 TMLGEEQWDWLEDWLASS---QATWKVIGSSVPFSPLNFPDAAEGLPFNMDSWDG-YPAERQRLLDFLRESGIRNVVFLS 371 (453)
T ss_dssp -SS-HHHHHHHHHHHHH-----SSEEEEE-SS--S---SS-SS-S--EETTSGGG-SHHHHHHHHHHHHHTT---EEEEE
T ss_pred CcCCHHHHHHHHHHHhcC---CCcEEEEEeCCceecccccccccccccCCCchhh-CHHHHHHHHHHHHhhCCCCEEEEe
Confidence 2689999999999985 4789999988876433221 111 135689999999988664 8999
Q ss_pred cCccccc
Q 019979 323 GHVHAYE 329 (333)
Q Consensus 323 GH~H~y~ 329 (333)
|+.|...
T Consensus 372 GDvH~~~ 378 (453)
T PF09423_consen 372 GDVHASA 378 (453)
T ss_dssp -SSSSEE
T ss_pred cCcchhe
Confidence 9999753
No 9
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.92 E-value=6.8e-24 Score=187.67 Aligned_cols=181 Identities=17% Similarity=0.252 Sum_probs=121.6
Q ss_pred EEEEeecCCCCCh--------hhHHHHhhcCCCCeEEcccccccccc--------chhhHHHHHHhhhhhhc--CCceEE
Q 019979 139 FAVAGDLGQTGWT--------KSTLDHIGQCKYDVHLLPGDLSYADY--------MQHRWDTFGELVQPLAS--ARPWMV 200 (333)
Q Consensus 139 f~~~gD~~~~~~~--------~~~~~~i~~~~~d~vl~~GDl~~~~~--------~~~~~~~~~~~~~~l~~--~~P~~~ 200 (333)
|+.++|+|.+... ..+++.+++.+||+||++||+++... ...+|+.|.+.+..... ..|++.
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 81 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWFD 81 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEEE
Confidence 7899999986442 12455677889999999999997532 14567777776655432 489999
Q ss_pred ccCCCCCCCCCCccccccccccccccCcCCCCCCCCceEEE--EeCCEEEEEEeccCC----------CCCCHHHHHHHH
Q 019979 201 TQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSF--DVAGAHLIMLGSYAD----------YDEYSDQYRWLK 268 (333)
Q Consensus 201 ~~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~--~~g~v~fi~lds~~~----------~~~~~~q~~WL~ 268 (333)
++||||..+..... ....+..++.... .....+|.+ +.|+++||+||+... .....+|++||+
T Consensus 82 v~GNHD~~~~~~~~-~~~~~~~~y~~~~----~~~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~wL~ 156 (256)
T cd07401 82 IRGNHDLFNIPSLD-SENNYYRKYSATG----RDGSFSFSHTTRFGNYSFIGVDPTLFPGPKRPFNFFGSLDKKLLDRLE 156 (256)
T ss_pred eCCCCCcCCCCCcc-chhhHHHHhheec----CCCccceEEEecCCCEEEEEEcCccCCCCCCCCceeccCCHHHHHHHH
Confidence 99999996433211 1111222121100 001223333 358999999999632 123489999999
Q ss_pred HHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCcccccc
Q 019979 269 DDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYER 330 (333)
Q Consensus 269 ~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~R 330 (333)
+.|++.. +.+++||++|+|+....... . . ....+.++|++++|+++||||.|.+++
T Consensus 157 ~~L~~~~--~~~~~IV~~HhP~~~~~~~~-~--~-~~~~~~~ll~~~~v~~vl~GH~H~~~~ 212 (256)
T cd07401 157 KELEKST--NSNYTIWFGHYPTSTIISPS-A--K-SSSKFKDLLKKYNVTAYLCGHLHPLGG 212 (256)
T ss_pred HHHHhcc--cCCeEEEEEcccchhccCCC-c--c-hhHHHHHHHHhcCCcEEEeCCccCCCc
Confidence 9999864 34579999999986532211 1 1 122399999999999999999999987
No 10
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.92 E-value=6e-24 Score=186.79 Aligned_cols=175 Identities=26% Similarity=0.333 Sum_probs=125.0
Q ss_pred eEEEEeecCCCCCh-------------hhHHHHhhcC--CCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEcc
Q 019979 138 TFAVAGDLGQTGWT-------------KSTLDHIGQC--KYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQ 202 (333)
Q Consensus 138 ~f~~~gD~~~~~~~-------------~~~~~~i~~~--~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~ 202 (333)
||+++||+|.+... +++++.+++. +||+||++||+++... ..+|+.+.+.++.+ .+|++.++
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~-~~~~~~~~~~l~~~--~~p~~~v~ 77 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGS-PESYERLRELLAAL--PIPVYLLP 77 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCC-HHHHHHHHHHHhhc--CCCEEEeC
Confidence 69999999987431 3455666555 9999999999998644 45677777777666 48999999
Q ss_pred CCCCCCCCCCccccccccccccccCcCCCCCCCCceEEEEeCCEEEEEEeccCCC----CCCHHHHHHHHHHhhcccCCC
Q 019979 203 GNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADY----DEYSDQYRWLKDDLSKVDRKK 278 (333)
Q Consensus 203 GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~----~~~~~q~~WL~~~L~~~~~~~ 278 (333)
||||... . +.+.|..... ..+..+|+|+.++++||+||+.... ....+|++||++.|++..
T Consensus 78 GNHD~~~------~---~~~~~~~~~~---~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~ql~wL~~~L~~~~--- 142 (240)
T cd07402 78 GNHDDRA------A---MRAVFPELPP---APGFVQYVVDLGGWRLILLDSSVPGQHGGELCAAQLDWLEAALAEAP--- 142 (240)
T ss_pred CCCCCHH------H---HHHhhccccc---cccccceeEecCCEEEEEEeCCCCCCcCCEECHHHHHHHHHHHHhCC---
Confidence 9999841 1 1112211100 1235688999999999999985432 125789999999999874
Q ss_pred CCeEEEEeccccccCCCCCC-CCChhHHHHHHHHHHhC-CCcEEEecCcccccc
Q 019979 279 TPWLLVLLHVPWYNSNEAHQ-GEGDGMMAIMEPLLYAA-SVDLVLAGHVHAYER 330 (333)
Q Consensus 279 ~~~~iv~~H~P~~~~~~~~~-~~~~~~~~~l~~l~~~~-~v~lvl~GH~H~y~R 330 (333)
.+++|+++|+|++.....+. ......++.+.+++.++ +|+++|+||.|...+
T Consensus 143 ~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~ 196 (240)
T cd07402 143 DKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPID 196 (240)
T ss_pred CCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHH
Confidence 24589999999876533111 11112368899999999 999999999998654
No 11
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.90 E-value=5.4e-23 Score=177.21 Aligned_cols=148 Identities=20% Similarity=0.251 Sum_probs=111.2
Q ss_pred eeEEEEeecCCCCCh---------hhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhh-cCCceEEccCCCC
Q 019979 137 ITFAVAGDLGQTGWT---------KSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLA-SARPWMVTQGNHE 206 (333)
Q Consensus 137 ~~f~~~gD~~~~~~~---------~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~-~~~P~~~~~GNHD 206 (333)
|||++++|+|..... +.+++.+.+.+||+|+++||+++.+....+|+.+.+.++.+. ..+|+++++||||
T Consensus 1 f~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 80 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGNHD 80 (214)
T ss_pred CEEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCCCc
Confidence 689999999975331 224444557789999999999986654678999999998886 5699999999999
Q ss_pred CCCCCCccccccccccccccCcCCCCCCCCceEEEEeCCEEEEEEeccCCCCCCHHHHHHHHHHhhcccCCCCCeEEEEe
Q 019979 207 KESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLL 286 (333)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~ 286 (333)
. ++.+|+ ....+|++||++.|++.+ .+++|+++
T Consensus 81 ~----------------------------------------~~~ld~----~~~~~ql~WL~~~L~~~~---~~~~iv~~ 113 (214)
T cd07399 81 L----------------------------------------VLALEF----GPRDEVLQWANEVLKKHP---DRPAILTT 113 (214)
T ss_pred c----------------------------------------hhhCCC----CCCHHHHHHHHHHHHHCC---CCCEEEEe
Confidence 3 222332 134899999999999863 23589999
Q ss_pred ccccccCCCCCCCC-----ChhHHHHHHHHHHhC-CCcEEEecCccccccc
Q 019979 287 HVPWYNSNEAHQGE-----GDGMMAIMEPLLYAA-SVDLVLAGHVHAYERS 331 (333)
Q Consensus 287 H~P~~~~~~~~~~~-----~~~~~~~l~~l~~~~-~v~lvl~GH~H~y~R~ 331 (333)
|+|++......... .....+.|.++++++ +|+++|+||.|.+.+.
T Consensus 114 H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~ 164 (214)
T cd07399 114 HAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAGRT 164 (214)
T ss_pred cccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccccCCCceE
Confidence 99998654322111 123456788999999 7999999999998775
No 12
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.1e-23 Score=175.47 Aligned_cols=190 Identities=23% Similarity=0.445 Sum_probs=128.6
Q ss_pred EECCCC-CCCeeEEEEeecCCCC-ChhhHH-HH---h-hcCCCCeEEccccccccccchhhHHH-HHHhhhhh----hcC
Q 019979 128 FKTPPA-QFPITFAVAGDLGQTG-WTKSTL-DH---I-GQCKYDVHLLPGDLSYADYMQHRWDT-FGELVQPL----ASA 195 (333)
Q Consensus 128 F~t~p~-~~~~~f~~~gD~~~~~-~~~~~~-~~---i-~~~~~d~vl~~GDl~~~~~~~~~~~~-~~~~~~~l----~~~ 195 (333)
+.-|+. ++.++|+++||+|... +.+..+ .+ | ++.++||||.+||.+|.++...+.|. |..-.+.+ .-.
T Consensus 34 l~~p~~~dgslsflvvGDwGr~g~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pSLQ 113 (336)
T KOG2679|consen 34 LYDPAKSDGSLSFLVVGDWGRRGSFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTAPSLQ 113 (336)
T ss_pred hcCCCCCCCceEEEEEcccccCCchhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCCCChhHHhhhhhcccCcccc
Confidence 444443 6889999999998543 222222 22 2 36899999999999999887554443 22222222 112
Q ss_pred CceEEccCCCCCCCCCCcccc--ccccccccccCcCCCCCCCCceEE----EEe--CCEEEEEEeccCC-------CCC-
Q 019979 196 RPWMVTQGNHEKESIPLIMDA--FQSYNARWKMPFEESGSNSNLYYS----FDV--AGAHLIMLGSYAD-------YDE- 259 (333)
Q Consensus 196 ~P~~~~~GNHD~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~ys----~~~--g~v~fi~lds~~~-------~~~- 259 (333)
.|||.+.||||+.++-..+-. +.....+|..|. .+|. .+. -++.++++|+... +..
T Consensus 114 kpWy~vlGNHDyrGnV~AQls~~l~~~d~RW~c~r--------sf~~~ae~ve~f~v~~~~f~~d~~~~~~~~~ydw~~v 185 (336)
T KOG2679|consen 114 KPWYSVLGNHDYRGNVEAQLSPVLRKIDKRWICPR--------SFYVDAEIVEMFFVDTTPFMDDTFTLCTDDVYDWRGV 185 (336)
T ss_pred cchhhhccCccccCchhhhhhHHHHhhccceeccc--------HHhhcceeeeeeccccccchhhheecccccccccccC
Confidence 699999999999765443322 555666776664 1221 111 1344444444221 110
Q ss_pred ------CHHHHHHHHHHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCcccccc
Q 019979 260 ------YSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYER 330 (333)
Q Consensus 260 ------~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~R 330 (333)
...++.||+..|++. .++|+||++|||+.+.+ +.|....+.++|.|+|++++||++++||+|+.|.
T Consensus 186 ~PR~~~~~~~l~~le~~L~~S---~a~wkiVvGHh~i~S~~--~HG~T~eL~~~LlPiL~~n~VdlY~nGHDHcLQh 257 (336)
T KOG2679|consen 186 LPRVKYLRALLSWLEVALKAS---RAKWKIVVGHHPIKSAG--HHGPTKELEKQLLPILEANGVDLYINGHDHCLQH 257 (336)
T ss_pred ChHHHHHHHHHHHHHHHHHHh---hcceEEEecccceehhh--ccCChHHHHHHHHHHHHhcCCcEEEecchhhhhh
Confidence 257789999999995 77899999999998754 4566677899999999999999999999999775
No 13
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=99.89 E-value=3e-22 Score=181.90 Aligned_cols=276 Identities=25% Similarity=0.339 Sum_probs=183.9
Q ss_pred CC-ceEEEEecC-CCcEEEEEEcCC-C------CCCcEEEEeccCCCCCeeEEeeEEEEeeeeeecCeEEEEEeCCCCCC
Q 019979 42 HP-QQVHISLAG-DSHMRVTWITDD-E------SSPSVVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLEHD 112 (333)
Q Consensus 42 ~p-~~v~l~~~~-~~~~~v~W~t~~-~------~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~ 112 (333)
.| .+.-|+.++ ...-.|.|..-+ . +....+|+++.++..+....++.. ......+.+++.++||+|+
T Consensus 36 rpaF~~GVaSGDp~~~svviWTRl~P~p~~~g~~v~V~wEvs~~~~f~~ivr~gt~~----a~p~~dhtv~v~~~gL~P~ 111 (522)
T COG3540 36 RPAFTHGVASGDPTATSVVIWTRLDPEPLNGGRPVPVIWEVSTDENFSNIVRKGTVI----ASPELDHTVHVDLRGLSPD 111 (522)
T ss_pred CCccccccccCCCCCCeEEEEEccCCccccCCCCcceEEEecCCccHHHHHhcCCcc----CCcccCceEEEeccCCCCC
Confidence 45 555566666 334445565442 1 334567777776533322222211 1134578999999999999
Q ss_pred CEEEEEeCcC---CCeeEEECCCC-CCCeeEEEEeecCCCCCh---hhHHHHhhcCCCCeEEccccccccccchhh----
Q 019979 113 TVYFYRCGRQ---GPEFEFKTPPA-QFPITFAVAGDLGQTGWT---KSTLDHIGQCKYDVHLLPGDLSYADYMQHR---- 181 (333)
Q Consensus 113 t~Y~Y~v~~~---s~~~~F~t~p~-~~~~~f~~~gD~~~~~~~---~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~---- 181 (333)
+.|+||+... +..++|||+|+ ...++++.++|..+..+. -.+.+.|.+.+|||+||.||.+|+.+....
T Consensus 112 ~~yfYRf~~~~~~spvGrtrTapa~~~~i~~~~fa~ascQ~~~~gy~~aY~~ma~~~~D~viH~GDyIYeyg~~~~~~~~ 191 (522)
T COG3540 112 QDYFYRFKAGDERSPVGRTRTAPAPGRAIRFVWFADASCQGWEIGYMTAYKTMAKEEPDFVIHLGDYIYEYGPIPDEVSL 191 (522)
T ss_pred ceEEEEEeeCCccccccccccCCCCCCcchhhhhhhccccccccchhHHHHHHHhcCCCEEEEcCCeeeccCCccccccc
Confidence 9999998653 67899999997 567888888887655443 467788889999999999999998664211
Q ss_pred --H----------------HHHH---------HhhhhhhcCCceEEccCCCCCCCCCCcc----c--------------c
Q 019979 182 --W----------------DTFG---------ELVQPLASARPWMVTQGNHEKESIPLIM----D--------------A 216 (333)
Q Consensus 182 --~----------------~~~~---------~~~~~l~~~~P~~~~~GNHD~~~~~~~~----~--------------~ 216 (333)
| +.+. ..++...+..|+++.+.+||..++-... + .
T Consensus 192 ~~~~~~~~~~~~~~ei~TLddYR~rya~y~~D~nLqaahA~~Pwi~~WDDHEv~NN~~~~~~~nD~~~~~k~~~~r~a~A 271 (522)
T COG3540 192 NSWKNVVVTQHKSKEIETLDDYRGRYAYYKTDENLQAAHAAFPWIVQWDDHEVANNWSNSIDENDSRYDEKDFVLRAAAA 271 (522)
T ss_pred ccccccccCCCCCcceeeHHHHhhHHhhhcccHHHHHhhccCCEEEEeccccccccccccccccCCCCChHHHHHHHHHH
Confidence 1 1121 2445556679999999999996542210 0 1
Q ss_pred ccccccccccCcCCC--CCCCCceEEEEeCC-EEEEEEeccCCC------C----------------CCHHHHHHHHHHh
Q 019979 217 FQSYNARWKMPFEES--GSNSNLYYSFDVAG-AHLIMLGSYADY------D----------------EYSDQYRWLKDDL 271 (333)
Q Consensus 217 ~~~~~~~~~~p~~~~--~~~~~~~ys~~~g~-v~fi~lds~~~~------~----------------~~~~q~~WL~~~L 271 (333)
.+.|.+. ||-... ......|-+|.||+ +.|.+||+.... + .+..|.+||+..|
T Consensus 272 ~qAyyE~--mPiR~~~~p~~~~lYR~~tyG~La~~~~LDtR~YR~dqp~~dg~~~~~q~~~~~~~~mlG~~QeqWLk~~L 349 (522)
T COG3540 272 RQAYYEH--MPIRYSSLPTDGRLYRSFTYGPLADLFVLDTRSYRTDQPCGDGNPPNCQAVAGSAATMLGEQQEQWLKRGL 349 (522)
T ss_pred HHHHHHh--CccccccCCccceeeeeeccccccceeeeehhhhccccccCCCCcchhhhhhCccccchhhHHHHHHHhhh
Confidence 1233332 443211 11347889999998 689999985322 1 2689999999999
Q ss_pred hcccCCCCCeEEEEecccccc----CC---C-------CCCCCChhHHHHHHHHHHhCCCc--EEEecCccc
Q 019979 272 SKVDRKKTPWLLVLLHVPWYN----SN---E-------AHQGEGDGMMAIMEPLLYAASVD--LVLAGHVHA 327 (333)
Q Consensus 272 ~~~~~~~~~~~iv~~H~P~~~----~~---~-------~~~~~~~~~~~~l~~l~~~~~v~--lvl~GH~H~ 327 (333)
.+. ++.|+|+..-.|+-. .. . .+.|. ...|++|+.+++..++. ++|+|.+|.
T Consensus 350 ~~S---katWnVia~q~~~~~~~~d~~~a~~~~~a~~D~wdGy-~~~RerLl~fi~~~~~~N~V~LtgDvH~ 417 (522)
T COG3540 350 GAS---KATWNVIAQQMPLGLVVFDGSPATEGQEANADGWDGY-PAGRERLLRFIADRKIRNTVVLTGDVHY 417 (522)
T ss_pred hhc---chhhhhhhhhcceeEeecCCCccccCccccccCcCCC-cccHHHHHHHHHhcCCCCcEEEechhHH
Confidence 984 788999998888621 11 0 11111 24688999999988665 999999996
No 14
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.89 E-value=2.3e-22 Score=180.11 Aligned_cols=182 Identities=21% Similarity=0.222 Sum_probs=119.1
Q ss_pred EECCCC-CCCeeEEEEeecCCCCC-------------hhhHHHHhhc--CCCCeEEccccccccccchhhHHHHHHhhhh
Q 019979 128 FKTPPA-QFPITFAVAGDLGQTGW-------------TKSTLDHIGQ--CKYDVHLLPGDLSYADYMQHRWDTFGELVQP 191 (333)
Q Consensus 128 F~t~p~-~~~~~f~~~gD~~~~~~-------------~~~~~~~i~~--~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~ 191 (333)
.+|.++ ..+++|++++|+|.... .+++++.+++ .+|||||++||+++.+. .+.++.+.+.++.
T Consensus 5 ~~~~~~~~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~-~~~~~~~~~~l~~ 83 (275)
T PRK11148 5 LTLPLAGEARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS-SEAYQHFAEGIAP 83 (275)
T ss_pred cccccCCCCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC-HHHHHHHHHHHhh
Confidence 556554 67899999999996321 1345566543 47999999999998543 4566666666666
Q ss_pred hhcCCceEEccCCCCCCCCCCccccccccccccccCcCCCCCCCCceEEEEeCCEEEEEEeccCCC----CCCHHHHHHH
Q 019979 192 LASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADY----DEYSDQYRWL 267 (333)
Q Consensus 192 l~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~----~~~~~q~~WL 267 (333)
+. +|++.++||||... .+..+.....+ ...++.+..++++||+||+.... ..+.+|++||
T Consensus 84 l~--~Pv~~v~GNHD~~~------~~~~~~~~~~~--------~~~~~~~~~~~~~~i~Lds~~~g~~~G~l~~~ql~wL 147 (275)
T PRK11148 84 LR--KPCVWLPGNHDFQP------AMYSALQDAGI--------SPAKHVLIGEHWQILLLDSQVFGVPHGELSEYQLEWL 147 (275)
T ss_pred cC--CcEEEeCCCCCChH------HHHHHHhhcCC--------CccceEEecCCEEEEEecCCCCCCcCCEeCHHHHHHH
Confidence 53 89999999999841 11111111011 12233344557999999995321 1358999999
Q ss_pred HHHhhcccCCCCCeEEEEeccccccCCCCCCC-CChhHHHHHHHHHHhC-CCcEEEecCccccc
Q 019979 268 KDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQG-EGDGMMAIMEPLLYAA-SVDLVLAGHVHAYE 329 (333)
Q Consensus 268 ~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~-~~~~~~~~l~~l~~~~-~v~lvl~GH~H~y~ 329 (333)
++.|++.+. +..||++|||+......+.. ......+++.++++++ +|+++|+||+|...
T Consensus 148 ~~~L~~~~~---~~~vv~~hH~P~~~~~~~~d~~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~ 208 (275)
T PRK11148 148 ERKLADAPE---RHTLVLLHHHPLPAGCAWLDQHSLRNAHELAEVLAKFPNVKAILCGHIHQEL 208 (275)
T ss_pred HHHHhhCCC---CCeEEEEcCCCCCCCcchhhccCCCCHHHHHHHHhcCCCceEEEecccChHH
Confidence 999998743 23566666655433322211 1112357899999998 89999999999754
No 15
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.85 E-value=6e-21 Score=172.95 Aligned_cols=186 Identities=22% Similarity=0.300 Sum_probs=123.1
Q ss_pred EEEeecCCCCC---hhhHHHHhhcC--CCCeEEccccccccccchh--------hHHHHHHhhhhhhcCCceEEccCCCC
Q 019979 140 AVAGDLGQTGW---TKSTLDHIGQC--KYDVHLLPGDLSYADYMQH--------RWDTFGELVQPLASARPWMVTQGNHE 206 (333)
Q Consensus 140 ~~~gD~~~~~~---~~~~~~~i~~~--~~d~vl~~GDl~~~~~~~~--------~~~~~~~~~~~l~~~~P~~~~~GNHD 206 (333)
.-+|+.++... .+.+++.+++. +|||||++||+++.+.... .+..+.+.++.....+|+++++||||
T Consensus 41 ~~~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD 120 (296)
T cd00842 41 GPWGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHD 120 (296)
T ss_pred CCCcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCC
Confidence 44666665432 24566677655 9999999999997655321 13445555666666799999999999
Q ss_pred CCCCCCcc------ccccccccccc--cCcCCC-CCCCCceEEEE-eCCEEEEEEeccCCC-----------CCCHHHHH
Q 019979 207 KESIPLIM------DAFQSYNARWK--MPFEES-GSNSNLYYSFD-VAGAHLIMLGSYADY-----------DEYSDQYR 265 (333)
Q Consensus 207 ~~~~~~~~------~~~~~~~~~~~--~p~~~~-~~~~~~~ys~~-~g~v~fi~lds~~~~-----------~~~~~q~~ 265 (333)
........ ..+..+.+.|. ++.... ....+.||++. .++++||+|||.... ....+|++
T Consensus 121 ~~p~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~ 200 (296)
T cd00842 121 SYPVNQFPPNNSPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQ 200 (296)
T ss_pred CCcccccCCcccccHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHH
Confidence 96432211 11112222221 222111 11246889998 889999999995321 12478999
Q ss_pred HHHHHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhCC--CcEEEecCccccc
Q 019979 266 WLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAAS--VDLVLAGHVHAYE 329 (333)
Q Consensus 266 WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~--v~lvl~GH~H~y~ 329 (333)
||+++|+++++.+ ..++|++|+|+....... .....+++.+++++|+ |.++|+||+|..+
T Consensus 201 WL~~~L~~a~~~~-~~v~I~~HiPp~~~~~~~---~~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~ 262 (296)
T cd00842 201 WLEDELQEAEQAG-EKVWIIGHIPPGVNSYDT---LENWSERYLQIINRYSDTIAGQFFGHTHRDE 262 (296)
T ss_pred HHHHHHHHHHHCC-CeEEEEeccCCCCccccc---chHHHHHHHHHHHHHHHhhheeeecccccce
Confidence 9999999986433 348899999987543221 1245688999999996 7789999999854
No 16
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.81 E-value=3.8e-19 Score=156.71 Aligned_cols=165 Identities=21% Similarity=0.285 Sum_probs=106.2
Q ss_pred hHHHHhh-cCCCCeEEccccccccccc--hhhHHH----HHHhhhhhhcCCceEEccCCCCCCCCCCc-ccccccccccc
Q 019979 153 STLDHIG-QCKYDVHLLPGDLSYADYM--QHRWDT----FGELVQPLASARPWMVTQGNHEKESIPLI-MDAFQSYNARW 224 (333)
Q Consensus 153 ~~~~~i~-~~~~d~vl~~GDl~~~~~~--~~~~~~----~~~~~~~l~~~~P~~~~~GNHD~~~~~~~-~~~~~~~~~~~ 224 (333)
+.++.+. ..+||+||++||+++.+.. ..+|.. |.+.+..+...+|++.++||||++..... ......|.+.|
T Consensus 35 ~~~~~~~~~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~~~~~~~~~rf~~~F 114 (257)
T cd08163 35 RNWRYMQKQLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNGVVLPVRQRFEKYF 114 (257)
T ss_pred HHHHHHHHhcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCCCCCHHHHHHHHHHh
Confidence 3444443 5689999999999986542 344543 33333333224799999999998532211 11223444444
Q ss_pred ccCcCCCCCCCCceEEEEeCCEEEEEEeccCC-----CCCCHHHHHHHHHHhhcccCCCCCeEEEEeccccccCCCCCCC
Q 019979 225 KMPFEESGSNSNLYYSFDVAGAHLIMLGSYAD-----YDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQG 299 (333)
Q Consensus 225 ~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~-----~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~ 299 (333)
. ..+|++++|+++||+||+... .....+|.+||++.|+.... ..+ +||++|+|+|......++
T Consensus 115 g----------~~~~~~~~~~~~fV~Lds~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~p-~ILl~H~Plyr~~~~~cg 182 (257)
T cd08163 115 G----------PTSRVIDVGNHTFVILDTISLSNKDDPDVYQPPREFLHSFSAMKVK-SKP-RILLTHVPLYRPPNTSCG 182 (257)
T ss_pred C----------CCceEEEECCEEEEEEccccccCCcccccchhHHHHHHhhhhccCC-CCc-EEEEeccccccCCCCCCC
Confidence 2 346899999999999999532 12346799999999887543 333 899999999865432111
Q ss_pred ---C---------Chh----H-HHHHHHHHHhCCCcEEEecCccccc
Q 019979 300 ---E---------GDG----M-MAIMEPLLYAASVDLVLAGHVHAYE 329 (333)
Q Consensus 300 ---~---------~~~----~-~~~l~~l~~~~~v~lvl~GH~H~y~ 329 (333)
+ +.+ + .+.-..+|++.++.+||+||+|-|=
T Consensus 183 ~~re~~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C 229 (257)
T cd08163 183 PLRESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYC 229 (257)
T ss_pred CccccCCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCccc
Confidence 0 000 1 1334467778899999999999874
No 17
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.81 E-value=4e-20 Score=152.93 Aligned_cols=188 Identities=22% Similarity=0.180 Sum_probs=101.9
Q ss_pred eeEEEEeecCCCCChh-----hHHHHhhcCCCCeEEccccccccccchhhHHHHH-HhhhhhhcCCceEEccCCCCCCCC
Q 019979 137 ITFAVAGDLGQTGWTK-----STLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFG-ELVQPLASARPWMVTQGNHEKESI 210 (333)
Q Consensus 137 ~~f~~~gD~~~~~~~~-----~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~-~~~~~l~~~~P~~~~~GNHD~~~~ 210 (333)
+||+++||+|...... .........++|+||++||+++.+.....+.... ..........|+++++||||....
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~~ 80 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYSG 80 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHHH
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhcccccccccccccccee
Confidence 6999999999875432 2333445889999999999998776544443322 123334556999999999999532
Q ss_pred CCcccccccccccc-ccCcCCCCCCCCceEEEEeCCEEEEEEeccCCCCCC---HHHHHHHHHHhhcccCCCCCeEEEEe
Q 019979 211 PLIMDAFQSYNARW-KMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEY---SDQYRWLKDDLSKVDRKKTPWLLVLL 286 (333)
Q Consensus 211 ~~~~~~~~~~~~~~-~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~---~~q~~WL~~~L~~~~~~~~~~~iv~~ 286 (333)
... .......... ...........+........................ ..++.|+...++. ...+++|+++
T Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iv~~ 156 (200)
T PF00149_consen 81 NSF-YGFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLLLLEA---KNDDPVIVFT 156 (200)
T ss_dssp HHH-HHHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHHHHHE---EEESEEEEEE
T ss_pred ccc-cccccccccccccccccccccCcceeeecccccccccccccccccccccchhccccccccccc---ccccceeEEE
Confidence 110 0000000000 000000000000001111222222222211111111 2333333333333 2456899999
Q ss_pred ccccccCCCCCCC--CChhHHHHHHHHHHhCCCcEEEecCcccc
Q 019979 287 HVPWYNSNEAHQG--EGDGMMAIMEPLLYAASVDLVLAGHVHAY 328 (333)
Q Consensus 287 H~P~~~~~~~~~~--~~~~~~~~l~~l~~~~~v~lvl~GH~H~y 328 (333)
|+|+++....... .....++.+..++++++|+++|+||+|.|
T Consensus 157 H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 157 HHPPYSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp SSSSSTTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred ecCCCCccccccccchhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 9999876543211 11246788999999999999999999987
No 18
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.77 E-value=3.5e-18 Score=145.88 Aligned_cols=149 Identities=21% Similarity=0.258 Sum_probs=99.4
Q ss_pred CCeeEEEEeecCCCCCh------------hhHHH-HhhcCCCCeEEccccccccccchh-hHHHHHHhhhhhhc-CCceE
Q 019979 135 FPITFAVAGDLGQTGWT------------KSTLD-HIGQCKYDVHLLPGDLSYADYMQH-RWDTFGELVQPLAS-ARPWM 199 (333)
Q Consensus 135 ~~~~f~~~gD~~~~~~~------------~~~~~-~i~~~~~d~vl~~GDl~~~~~~~~-~~~~~~~~~~~l~~-~~P~~ 199 (333)
..+||++++|+|..... .+.++ .+...+||+||++||+++...... .+..+.+.++.+.. .+|++
T Consensus 1 ~~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~ 80 (199)
T cd07383 1 GKFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWA 80 (199)
T ss_pred CceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEE
Confidence 36899999999985431 12222 345779999999999998665432 35555666666644 49999
Q ss_pred EccCCCCCCCCCCccccccccccccccCcCCCCCCCCceEEEEeCCEEEEEEeccCCCCCCHHHHHHHHHHhhccc--CC
Q 019979 200 VTQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVD--RK 277 (333)
Q Consensus 200 ~~~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~q~~WL~~~L~~~~--~~ 277 (333)
+++||||.. . ....+|++||++.|++.. +.
T Consensus 81 ~~~GNHD~~-----------------------------------------------g-~l~~~ql~wL~~~l~~~~~~~~ 112 (199)
T cd07383 81 ATFGNHDGY-----------------------------------------------D-WIRPSQIEWFKETSAALKKKYG 112 (199)
T ss_pred EECccCCCC-----------------------------------------------C-CCCHHHHHHHHHHHHHHhhccC
Confidence 999999920 0 124789999999999863 11
Q ss_pred CCCeEEEEeccccccCCCCCC---------CC---ChhHHHHHHHH-HHhCCCcEEEecCccccccc
Q 019979 278 KTPWLLVLLHVPWYNSNEAHQ---------GE---GDGMMAIMEPL-LYAASVDLVLAGHVHAYERS 331 (333)
Q Consensus 278 ~~~~~iv~~H~P~~~~~~~~~---------~~---~~~~~~~l~~l-~~~~~v~lvl~GH~H~y~R~ 331 (333)
...+.++++|+|+......+. .+ .......+..+ .+..+|+++|+||+|.++..
T Consensus 113 ~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~v~~v~~GH~H~~~~~ 179 (199)
T cd07383 113 KPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKINSGLFKALLERGDVKGVFCGHDHGNDFC 179 (199)
T ss_pred CCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCCcHHHHHHHHcCCeEEEEeCCCCCccee
Confidence 334699999999865322111 01 00122344444 45669999999999997643
No 19
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.76 E-value=1.3e-17 Score=145.48 Aligned_cols=174 Identities=18% Similarity=0.203 Sum_probs=106.7
Q ss_pred EEEEeecCCCC--------Ch---hhHHHHhhcC------CCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEc
Q 019979 139 FAVAGDLGQTG--------WT---KSTLDHIGQC------KYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVT 201 (333)
Q Consensus 139 f~~~gD~~~~~--------~~---~~~~~~i~~~------~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~ 201 (333)
+.+++|+|... .. ++.++.+.+. +||+||++||+++.... .......+.++.+ ..|++++
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~-~~~~~~l~~l~~l--~~~v~~V 77 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKL-EEAKLDLAWIDAL--PGTKVLL 77 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCCh-HHHHHHHHHHHhC--CCCeEEE
Confidence 35789999762 22 3445554433 99999999999964332 2222333333333 2578999
Q ss_pred cCCCCCCCCCCccccccccccccccCcCCCCCCCCceEEEEeCCEEEEEEeccC----CC-----------C--CCHHHH
Q 019979 202 QGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYA----DY-----------D--EYSDQY 264 (333)
Q Consensus 202 ~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~----~~-----------~--~~~~q~ 264 (333)
+||||+... ....+.+.+ +.. +..-....++.++++.|++++... .+ + ....|+
T Consensus 78 ~GNHD~~~~-----~~~~~~~~l--~~~--~~~~~~n~~~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (232)
T cd07393 78 KGNHDYWWG-----SASKLRKAL--EES--RLALLFNNAYIDDDVAICGTRGWDNPGNPWPPINETLKVEEDEKIFEREL 148 (232)
T ss_pred eCCccccCC-----CHHHHHHHH--Hhc--CeEEeccCcEEECCEEEEEEEeeCCCCCccccccccccchhHHHHHHHHH
Confidence 999998321 111121111 100 000011345667889999987421 11 0 025689
Q ss_pred HHHHHHhhcccCCC-CCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCcccccccc
Q 019979 265 RWLKDDLSKVDRKK-TPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSV 332 (333)
Q Consensus 265 ~WL~~~L~~~~~~~-~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~R~~ 332 (333)
+||++.|+++.... ..++|+++|+|++.... ..+.+.+++++++++++|+||+|.+++..
T Consensus 149 ~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~~--------~~~~~~~~~~~~~v~~vl~GH~H~~~~~~ 209 (232)
T cd07393 149 ERLELSLKAAKKREKEKIKIVMLHYPPANENG--------DDSPISKLIEEYGVDICVYGHLHGVGRDR 209 (232)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEECCCCcCCCC--------CHHHHHHHHHHcCCCEEEECCCCCCcccc
Confidence 99999999864322 24699999999875432 12467888999999999999999987643
No 20
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.74 E-value=3.7e-17 Score=138.02 Aligned_cols=167 Identities=13% Similarity=0.130 Sum_probs=103.4
Q ss_pred EEEEeecCCCCChhhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCCCCCcccccc
Q 019979 139 FAVAGDLGQTGWTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQ 218 (333)
Q Consensus 139 f~~~gD~~~~~~~~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~~~~~~~~~~ 218 (333)
|+++||+|........ ..+.+.++|+||++||+++.... .....+ +.+..+ ..|+++++||||.... ..
T Consensus 1 i~~~sD~H~~~~~~~~-~~~~~~~~D~vv~~GDl~~~~~~-~~~~~~-~~l~~~--~~p~~~v~GNHD~~~~------~~ 69 (188)
T cd07392 1 ILAISDIHGDVEKLEA-IILKAEEADAVIVAGDITNFGGK-EAAVEI-NLLLAI--GVPVLAVPGNCDTPEI------LG 69 (188)
T ss_pred CEEEEecCCCHHHHHH-HHhhccCCCEEEECCCccCcCCH-HHHHHH-HHHHhc--CCCEEEEcCCCCCHHH------HH
Confidence 5789999976432222 34567889999999999975542 222222 333322 3899999999997321 11
Q ss_pred ccccccccCcCCCCCCCCceEEEEeCCEEEEEEeccCC------CCCCHHHHHHHHHHhhcccCCCCCeEEEEecccccc
Q 019979 219 SYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYAD------YDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYN 292 (333)
Q Consensus 219 ~~~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~------~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~ 292 (333)
....... ......+.+++++|+++++... .....+|++|+ +.++.. +.+.+|+++|+|++.
T Consensus 70 ~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~l~~~---~~~~~ilv~H~pp~~ 136 (188)
T cd07392 70 LLTSAGL---------NLHGKVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSD-GRLNNL---LAKNLILVTHAPPYG 136 (188)
T ss_pred hhhcCcE---------ecCCCEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHh-hhhhcc---CCCCeEEEECCCCcC
Confidence 0000000 0111345678999999987421 12346888998 444433 224589999999976
Q ss_pred C-CCCCCCCChhHHHHHHHHHHhCCCcEEEecCccccc
Q 019979 293 S-NEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (333)
Q Consensus 293 ~-~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~ 329 (333)
. ............+.+.+++++++++++||||.|.-.
T Consensus 137 ~~~d~~~~~~~~g~~~l~~li~~~~~~~~l~GH~H~~~ 174 (188)
T cd07392 137 TAVDRVSGGFHVGSKAIRKFIEERQPLLCICGHIHESR 174 (188)
T ss_pred CcccccCCCCccCCHHHHHHHHHhCCcEEEEecccccc
Confidence 3 211111101234788899999999999999999753
No 21
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.73 E-value=3.3e-17 Score=143.84 Aligned_cols=176 Identities=18% Similarity=0.122 Sum_probs=107.3
Q ss_pred eEEEEeecCCCCCh-------hhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCCC
Q 019979 138 TFAVAGDLGQTGWT-------KSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESI 210 (333)
Q Consensus 138 ~f~~~gD~~~~~~~-------~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~~ 210 (333)
||++++|+|..... +.+++.+.+.++|+||++||++... .+...+.+.+..+ ...|++.++||||+...
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~---~~~~~~~~~l~~~-~~~pv~~v~GNHD~~~~ 76 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISNDF---QRSLPFIEKLQEL-KGIKVTFNAGNHDMLKD 76 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCCEEEECCccccch---hhHHHHHHHHHHh-cCCcEEEECCCCCCCCC
Confidence 58999999964211 2355666778899999999999642 1222233333332 34899999999998421
Q ss_pred CCccccccccccccccCcCCCCCCCCceEEEEeCCEEEEEEeccCCC--------------------------C-----C
Q 019979 211 PLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADY--------------------------D-----E 259 (333)
Q Consensus 211 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~--------------------------~-----~ 259 (333)
.. +..+.+.+. +. ...+.++.+..++++|++++...++ . .
T Consensus 77 ~~----~~~~~~~~~-~~----~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 147 (239)
T TIGR03729 77 LT----YEEIESNDS-PL----YLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEILRWKKSFWFDRRIKRPMSDPER 147 (239)
T ss_pred CC----HHHHHhccc-hh----hhcccccccCCCceEEEeeccceecccccccCHHHHHHhhhcEEeecccCCCCChHHH
Confidence 11 111111110 00 0112333344467888888842221 0 1
Q ss_pred CHHHHHHHHHHhhcccCCCCCeEEEEeccccccCCC-------CCCCCC-hhHHHHHHHHHHhCCCcEEEecCccccc
Q 019979 260 YSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNE-------AHQGEG-DGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (333)
Q Consensus 260 ~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~-------~~~~~~-~~~~~~l~~l~~~~~v~lvl~GH~H~y~ 329 (333)
..+|++||++.|++... +.+|+++|+|+..... .+.... ....+.+.+++++++|+++++||.|.-.
T Consensus 148 ~~~~l~~l~~~l~~~~~---~~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~~v~~~i~GH~H~~~ 222 (239)
T TIGR03729 148 TAIVLKQLKKQLNQLDN---KQVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFGQLLVKYEIKDVIFGHLHRRF 222 (239)
T ss_pred HHHHHHHHHHHHHhcCC---CCEEEEEcccchHHHhcCCCCCcchhhhhhccChHHHHHHHHHhCCCEEEECCccCCC
Confidence 26788999999988743 2389999998854211 111100 1124789999999999999999999764
No 22
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.72 E-value=1.2e-16 Score=148.47 Aligned_cols=93 Identities=22% Similarity=0.350 Sum_probs=71.3
Q ss_pred CCceEEEE-eCCEEEEEEeccCCC-----CCCHHHHHHHHHHhhcccCCCCCeEEEEeccccccCCCCCC-----CCChh
Q 019979 235 SNLYYSFD-VAGAHLIMLGSYADY-----DEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQ-----GEGDG 303 (333)
Q Consensus 235 ~~~~ys~~-~g~v~fi~lds~~~~-----~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~-----~~~~~ 303 (333)
+..||+|+ .++++||+||+.... ...++|++||+++|++. +.+++||++|||++.....+. +....
T Consensus 290 G~~YYSFd~~ggvrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~a---~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~ 366 (496)
T TIGR03767 290 GTGYYTFDIAGGVRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRAS---SDTLFVLFSHHTSWSMVNELTDPVDPGEKRH 366 (496)
T ss_pred CCceEEEEeECCEEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhcC---CCCCEEEEECCCCcccccccccccccccccc
Confidence 46799999 899999999996421 23589999999999985 335699999999876543221 11112
Q ss_pred HHHHHHHHHHhC-CCcEEEecCcccccc
Q 019979 304 MMAIMEPLLYAA-SVDLVLAGHVHAYER 330 (333)
Q Consensus 304 ~~~~l~~l~~~~-~v~lvl~GH~H~y~R 330 (333)
..++|.++|+++ +|.++||||.|....
T Consensus 367 n~~eLldLL~~ypnV~aVfsGHvH~n~i 394 (496)
T TIGR03767 367 LGTELVSLLLEHPNVLAWVNGHTHSNKI 394 (496)
T ss_pred CHHHHHHHHhcCCCceEEEECCcCCCcc
Confidence 347899999998 899999999998653
No 23
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.72 E-value=1.7e-16 Score=143.62 Aligned_cols=179 Identities=23% Similarity=0.302 Sum_probs=118.4
Q ss_pred eeEEEEeecCCC--CC-h----hhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCC
Q 019979 137 ITFAVAGDLGQT--GW-T----KSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKES 209 (333)
Q Consensus 137 ~~f~~~gD~~~~--~~-~----~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~ 209 (333)
++|+.++|.|.. .. . .++++.++..+||++|++||+++. +....++...+.++......|++.+|||||...
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~-~~~~~~~~~~~~l~~~~~~~~~~~vpGNHD~~~ 79 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTND-GEPEEYRRLKELLARLELPAPVIVVPGNHDARV 79 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCC-CCHHHHHHHHHHHhhccCCCceEeeCCCCcCCc
Confidence 489999999988 22 1 345567778899999999999986 445667777777774445589999999999953
Q ss_pred CCCccccccccccccccCcCCCCCCCCceEEEEe-CCEEEEEEeccCCC----CCCHHHHHHHHHHhhcccCCCCCeEEE
Q 019979 210 IPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDV-AGAHLIMLGSYADY----DEYSDQYRWLKDDLSKVDRKKTPWLLV 284 (333)
Q Consensus 210 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~-g~v~fi~lds~~~~----~~~~~q~~WL~~~L~~~~~~~~~~~iv 284 (333)
.. ...+...+.... ..+-.... ++++++.+|+.... ..+..|++||++.|++........+|+
T Consensus 80 ~~-----~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~d~~~~~~~~G~~~~~q~~~l~~~l~~~~~~~~~~~v~ 147 (301)
T COG1409 80 VN-----GEAFSDQFFNRY-------AVLVGACSSGGWRVIGLDSSVPGVPLGRLGAEQLDWLEEALAAAPERAKDTVVV 147 (301)
T ss_pred hH-----HHHhhhhhcccC-------cceEeeccCCceEEEEecCCCCCCCCCEECHHHHHHHHHHHHhCccccCceEEE
Confidence 21 112222221110 11111112 67899999996432 246899999999999875431123577
Q ss_pred EeccccccCCCCCCCCChhHHHHHHHHHHhCC--CcEEEecCcccc
Q 019979 285 LLHVPWYNSNEAHQGEGDGMMAIMEPLLYAAS--VDLVLAGHVHAY 328 (333)
Q Consensus 285 ~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~--v~lvl~GH~H~y 328 (333)
++|+|+.................+..++..++ |+++|+||.|.-
T Consensus 148 ~~hh~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~ 193 (301)
T COG1409 148 LHHHPLPSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLSGHIHLA 193 (301)
T ss_pred ecCCCCCCCCCccceeeeecchhHHHHHHhcCCceEEEEeCccccc
Confidence 77777655433322222223466777888887 999999999975
No 24
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.69 E-value=8.9e-16 Score=131.96 Aligned_cols=174 Identities=13% Similarity=0.080 Sum_probs=104.6
Q ss_pred CCeeEEEEeecCCCCC-hhhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCCCCCc
Q 019979 135 FPITFAVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLI 213 (333)
Q Consensus 135 ~~~~f~~~gD~~~~~~-~~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~~~~~ 213 (333)
..-|++++||+|.+.. .+++++.+++.++|+||++||+++.+...+....+.+.+..+. .|+++++||||.. ..
T Consensus 3 ~~~kIl~iSDiHgn~~~le~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l~--~pv~~V~GNhD~~-v~-- 77 (224)
T cd07388 3 TVRYVLATSNPKGDLEALEKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGEAH--LPTFYVPGPQDAP-LW-- 77 (224)
T ss_pred ceeEEEEEEecCCCHHHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcC--CceEEEcCCCChH-HH--
Confidence 3468999999996532 2345555556789999999999985432333333344333332 7999999999973 00
Q ss_pred ccccc-ccccccccCcCCCCCCCCceEEEEe-CCEEEEEEeccCCC--CCCHHHH----HHHHH----HhhcccCCCCCe
Q 019979 214 MDAFQ-SYNARWKMPFEESGSNSNLYYSFDV-AGAHLIMLGSYADY--DEYSDQY----RWLKD----DLSKVDRKKTPW 281 (333)
Q Consensus 214 ~~~~~-~~~~~~~~p~~~~~~~~~~~ys~~~-g~v~fi~lds~~~~--~~~~~q~----~WL~~----~L~~~~~~~~~~ 281 (333)
.... .|.+....|... . .... ...+ |+++|+.++....+ ...+++. .||.+ .+.+. ..+.
T Consensus 78 -~~l~~~~~~~~~~p~~~-~-lh~~--~~~~~g~~~~~GlGGs~~~~~e~sE~e~~~~~~~~~~~~l~~~~~~---~~~~ 149 (224)
T cd07388 78 -EYLREAYNAELVHPEIR-N-VHET--FAFWRGPYLVAGVGGEIADEGEPEEHEALRYPAWVAEYRLKALWEL---KDYR 149 (224)
T ss_pred -HHHHHHhcccccCccce-e-cCCC--eEEecCCeEEEEecCCcCCCCCcCHHHHhhhhhhHHHHHHHHHHhC---CCCC
Confidence 0001 111000112100 0 0111 2344 55999999964432 2234542 56433 33332 2235
Q ss_pred EEEEeccccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCcc
Q 019979 282 LLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVH 326 (333)
Q Consensus 282 ~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H 326 (333)
.|+++|+|++.....+ ...+.+.++++++++.+++|||.|
T Consensus 150 ~VLv~H~PP~g~g~~h-----~GS~alr~~I~~~~P~l~i~GHih 189 (224)
T cd07388 150 KVFLFHTPPYHKGLNE-----QGSHEVAHLIKTHNPLVVLVGGKG 189 (224)
T ss_pred eEEEECCCCCCCCCCc-----cCHHHHHHHHHHhCCCEEEEcCCc
Confidence 8999999999874322 235789999999999999999998
No 25
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.63 E-value=2.1e-15 Score=121.90 Aligned_cols=115 Identities=27% Similarity=0.310 Sum_probs=87.0
Q ss_pred EEEEeecCCCCChh-----------hHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcC-CceEEccCCCC
Q 019979 139 FAVAGDLGQTGWTK-----------STLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASA-RPWMVTQGNHE 206 (333)
Q Consensus 139 f~~~gD~~~~~~~~-----------~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~-~P~~~~~GNHD 206 (333)
|+.++|+|.+.... .+++.+.+.++|+|+++||+++... ..+|+.+.+.++.+... .|++.++||||
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~-~~~~~~~~~~~~~l~~~~~~~~~v~GNHD 79 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKALDPDLVVITGDLTQRGL-PEEFEEAREFLDALPAPLEPVLVVPGNHD 79 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhccCCCEEEECCCCCCCCC-HHHHHHHHHHHHHccccCCcEEEeCCCCe
Confidence 57899999865321 1345566889999999999998554 46677777888877654 69999999999
Q ss_pred CCCCCCccccccccccccccCcCCCCCCCCceEEEEeCCEEEEEEeccCCCCCCHHHHHHHHHHhhcccCCCCCeEEEEe
Q 019979 207 KESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLL 286 (333)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~ 286 (333)
. |+++
T Consensus 80 ~---------------------------------------------------------------------------iv~~ 84 (144)
T cd07400 80 V---------------------------------------------------------------------------IVVL 84 (144)
T ss_pred E---------------------------------------------------------------------------EEEe
Confidence 6 8999
Q ss_pred ccccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCcccccc
Q 019979 287 HVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYER 330 (333)
Q Consensus 287 H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~R 330 (333)
|+|++.......... ...+.+.+++++++++++++||+|....
T Consensus 85 Hhp~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~l~GH~H~~~~ 127 (144)
T cd07400 85 HHPLVPPPGSGRERL-LDAGDALKLLAEAGVDLVLHGHKHVPYV 127 (144)
T ss_pred cCCCCCCCccccccC-CCHHHHHHHHHHcCCCEEEECCCCCcCe
Confidence 999876543221111 1457799999999999999999998653
No 26
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.63 E-value=1.7e-15 Score=125.43 Aligned_cols=143 Identities=22% Similarity=0.207 Sum_probs=87.8
Q ss_pred EEEEeecCCCCChhh-HH-HHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCCCCCcccc
Q 019979 139 FAVAGDLGQTGWTKS-TL-DHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDA 216 (333)
Q Consensus 139 f~~~gD~~~~~~~~~-~~-~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~~~~~~~~ 216 (333)
|+++||+|.+..... .+ +.+...++|+++++||+++.... ..+.. .........|+++++||||+.
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~~~~-~~~~~---~~~~~~~~~~v~~v~GNHD~~-------- 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYLTDA-PRFAP---LLLALKGFEPVIYVPGNHEFY-------- 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCCEEEECCCCCCCcch-HHHHH---HHHhhcCCccEEEeCCCcceE--------
Confidence 578999997653322 22 33457789999999999975432 22221 222333458999999999993
Q ss_pred ccccccccccCcCCCCCCCCceEEEEeCCEEEEEEeccCCCCC-CHHHHHHHHHHhhcccCCCCCeEEEEeccccccCCC
Q 019979 217 FQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDE-YSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNE 295 (333)
Q Consensus 217 ~~~~~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~-~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~ 295 (333)
++|+......++.. ..+..+|+.++++ +.+||++|+|+.....
T Consensus 69 -----------------------------~~~~G~~~w~~~~~~~~~~~~~~~~d~~-------~~~vv~~HhpP~~~~~ 112 (166)
T cd07404 69 -----------------------------VRIIGTTLWSDISLFGEAAARMRMNDFR-------GKTVVVTHHAPSPLSL 112 (166)
T ss_pred -----------------------------EEEEeeecccccCccchHHHHhCCCCCC-------CCEEEEeCCCCCcccc
Confidence 12222222222221 2344455444433 2389999999976543
Q ss_pred CCC---C-CChhHHHHHHHHHHhCCCcEEEecCccccc
Q 019979 296 AHQ---G-EGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (333)
Q Consensus 296 ~~~---~-~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~ 329 (333)
.+. + .....++.+.+++++.+|+++++||+|...
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~~ 150 (166)
T cd07404 113 APQYGDSLVNAAFAVDLDDLILADPIDLWIHGHTHFNF 150 (166)
T ss_pred CccccCCCcchhhhhccHhHHhhcCCCEEEECCccccc
Confidence 221 1 112345667888889999999999999764
No 27
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.62 E-value=5e-15 Score=128.60 Aligned_cols=164 Identities=22% Similarity=0.171 Sum_probs=100.8
Q ss_pred CeeEEEEeecCCCCCh-----hhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCCC
Q 019979 136 PITFAVAGDLGQTGWT-----KSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESI 210 (333)
Q Consensus 136 ~~~f~~~gD~~~~~~~-----~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~~ 210 (333)
++||++++|+|..... +++++.+.+.+||+|+++||+++...... +.+.+.++.+....|+++++||||+...
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~--~~~~~~l~~l~~~~~v~~v~GNHD~~~~ 78 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGSVDVL--ELLLELLKKLKAPLGVYAVLGNHDYYSG 78 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCcchhh--HHHHHHHhccCCCCCEEEECCCcccccC
Confidence 4799999999986432 45666777889999999999998654322 3455566666666899999999999543
Q ss_pred CCccccccccccccccCcCCCCCCCCceEEEEeCCEEEEEEeccCCCCCCHHHHHHHHHHhhcccCCCCCeEEEEecccc
Q 019979 211 PLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPW 290 (333)
Q Consensus 211 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~ 290 (333)
.. ..+....+..... ...+....++.++..+..+.... .....+++.+.+++.+ +.++.|++.|.|.
T Consensus 79 ~~--~~~~~~l~~~~v~-----~L~~~~~~~~~~~~~i~i~G~~~----~~~~~~~~~~~~~~~~--~~~~~I~l~H~P~ 145 (223)
T cd07385 79 DE--ENWIEALESAGIT-----VLRNESVEISVGGATIGIAGVDD----GLGRRPDLEKALKGLD--EDDPNILLAHQPD 145 (223)
T ss_pred ch--HHHHHHHHHcCCE-----EeecCcEEeccCCeEEEEEeccC----ccccCCCHHHHHhCCC--CCCCEEEEecCCC
Confidence 22 1101111111111 01234455666664444432111 1122345666666543 3346999999985
Q ss_pred ccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCccccccc
Q 019979 291 YNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERS 331 (333)
Q Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~R~ 331 (333)
+. +. +.+.++|++++||+|..+..
T Consensus 146 ~~-------------~~----~~~~~~dl~l~GHtHggqi~ 169 (223)
T cd07385 146 TA-------------EE----AAAWGVDLQLSGHTHGGQIR 169 (223)
T ss_pred hh-------------HH----hcccCccEEEeccCCCCEEe
Confidence 31 11 25679999999999987754
No 28
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.61 E-value=2e-14 Score=132.47 Aligned_cols=92 Identities=18% Similarity=0.242 Sum_probs=65.1
Q ss_pred CceEEEE-eCCE--EEEEEeccCC---------C--CCCHHHHHHHHHHhhcccCCCCCeEEEEeccccccCCCC----C
Q 019979 236 NLYYSFD-VAGA--HLIMLGSYAD---------Y--DEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEA----H 297 (333)
Q Consensus 236 ~~~ys~~-~g~v--~fi~lds~~~---------~--~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~----~ 297 (333)
..||+|+ .|++ ++|+||+... + ....+|++||+++|++... +.+++|+++|+|+...... +
T Consensus 292 ~~yYsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~a-~~p~VVV~hHpPi~t~gi~~md~w 370 (492)
T TIGR03768 292 FACYSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQA-DGQLMIIAAHIPIAVSPIGSEMEW 370 (492)
T ss_pred cceeEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCcC-CCceEEEEeCCCcccCCccchhhh
Confidence 4599999 5855 9999998531 1 1358999999999998864 4567888888887652211 1
Q ss_pred C---------CCChhHHHHHHHHHHhC-CCcEEEecCcccc
Q 019979 298 Q---------GEGDGMMAIMEPLLYAA-SVDLVLAGHVHAY 328 (333)
Q Consensus 298 ~---------~~~~~~~~~l~~l~~~~-~v~lvl~GH~H~y 328 (333)
. ..+.....+|..+|++| +|.++||||.|.-
T Consensus 371 ~~~~~~~~~~L~n~~~~~eLlaLL~~hPnVla~LsGHvHrn 411 (492)
T TIGR03768 371 WLGAADANPDLQNAVSLTGLVTTLQKYPNLLMWIAGHRHLN 411 (492)
T ss_pred ccccccccccccccccHHHHHHHHhcCCCeEEEEcCCcccc
Confidence 1 00111124899999999 7989999999953
No 29
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.61 E-value=4.6e-15 Score=128.65 Aligned_cols=184 Identities=17% Similarity=0.153 Sum_probs=104.7
Q ss_pred eEEEEeecCCCCCh----------------hhHHHHhhcCCCCeEEccccccccccc-hhhHHHHHHhhhhhh-cCCceE
Q 019979 138 TFAVAGDLGQTGWT----------------KSTLDHIGQCKYDVHLLPGDLSYADYM-QHRWDTFGELVQPLA-SARPWM 199 (333)
Q Consensus 138 ~f~~~gD~~~~~~~----------------~~~~~~i~~~~~d~vl~~GDl~~~~~~-~~~~~~~~~~~~~l~-~~~P~~ 199 (333)
||++++|+|.+... +++++.+.+.+||+||++||+++.... ...+..+.+.++.+. ..+|++
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVF 80 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEE
Confidence 68999999976431 334455567899999999999975432 334566667777664 358999
Q ss_pred EccCCCCCCCCCCccccccccccccccCcCCCCCCCCceEEEEeCCEEEEEEeccCCCCCCHHHHHHHHHHhhcccCCCC
Q 019979 200 VTQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKT 279 (333)
Q Consensus 200 ~~~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~q~~WL~~~L~~~~~~~~ 279 (333)
+++||||.............+........ ..-........++.+++.|++++..... ....+.++++..+.+.. +.
T Consensus 81 ~~~GNHD~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~i~g~~~~~~~-~~~~~~~~~~~~~~~~~--~~ 156 (223)
T cd00840 81 IIAGNHDSPSRLGALSPLLALSGLHLVGV-EEDVLTPLLLPKGGTGVAIYGLPYLRRS-RLRDLLADAELRPRPLD--PD 156 (223)
T ss_pred EecCCCCCccccccccchHhhCcEEEEcc-cCcceeEEEeccCCeEEEEEECCCCCHH-HHHHHHHHHHHHhhccC--CC
Confidence 99999999643211000000100000000 0000011222334456888888753221 11333444444544443 33
Q ss_pred CeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCccccc
Q 019979 280 PWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (333)
Q Consensus 280 ~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~ 329 (333)
...|++.|.|+.......... .......+.+.++|++++||.|..+
T Consensus 157 ~~~Il~~H~~~~~~~~~~~~~----~~~~~~~~~~~~~d~v~~GH~H~~~ 202 (223)
T cd00840 157 DFNILLLHGGVAGAGPSDSER----APFVPEALLPAGFDYVALGHIHRPQ 202 (223)
T ss_pred CcEEEEEeeeeecCCCCcccc----cccCcHhhcCcCCCEEECCCcccCe
Confidence 469999999986543221110 1233444667899999999999865
No 30
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.60 E-value=1.4e-14 Score=129.28 Aligned_cols=163 Identities=20% Similarity=0.174 Sum_probs=97.0
Q ss_pred CCCCeeEEEEeecCCCCC-----hhhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCC
Q 019979 133 AQFPITFAVAGDLGQTGW-----TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEK 207 (333)
Q Consensus 133 ~~~~~~f~~~gD~~~~~~-----~~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~ 207 (333)
..+++||++++|+|.... ..++++.+++.+||+|+++||+++.+. ...++.+.+.++.+....|+++++||||+
T Consensus 46 ~~~~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~~-~~~~~~~~~~L~~L~~~~pv~~V~GNHD~ 124 (271)
T PRK11340 46 NAAPFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDM-PLNFSAFSDVLSPLAECAPTFACFGNHDR 124 (271)
T ss_pred CCCCcEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCCEEEEccCcCCCCc-cccHHHHHHHHHHHhhcCCEEEecCCCCc
Confidence 356799999999998632 234566677889999999999997322 22355666777777766899999999998
Q ss_pred CCCCCccccccccccccccCcCCCCCCCCceEEEEeCC--EEEEEEeccCCCCCCHHHHHHHHHHhhcccCCCCCeEEEE
Q 019979 208 ESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAG--AHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVL 285 (333)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~--v~fi~lds~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~ 285 (333)
..............+.-.. .-..+....+..++ +.++++|.... +... ..+.+++ + ..+|++
T Consensus 125 ~~~~~~~~~~~~~l~~~gi-----~lL~n~~~~i~~~~~~i~i~G~~d~~~---~~~~---~~~~~~~----~-~~~IlL 188 (271)
T PRK11340 125 PVGTEKNHLIGETLKSAGI-----TVLFNQATVIATPNRQFELVGTGDLWA---GQCK---PPPASEA----N-LPRLVL 188 (271)
T ss_pred ccCccchHHHHHHHHhcCc-----EEeeCCeEEEeeCCcEEEEEEecchhc---cCCC---hhHhcCC----C-CCeEEE
Confidence 4221100011111111000 00123444555543 66677763211 1111 1112222 2 248999
Q ss_pred eccccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCccccc
Q 019979 286 LHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (333)
Q Consensus 286 ~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~ 329 (333)
.|.|-.- +.+.+.++|++||||+|--|
T Consensus 189 ~H~P~~~-----------------~~~~~~~~dL~lsGHTHGGQ 215 (271)
T PRK11340 189 AHNPDSK-----------------EVMRDEPWDLMLCGHTHGGQ 215 (271)
T ss_pred EcCCChh-----------------HhhccCCCCEEEeccccCCe
Confidence 9999431 12456789999999999644
No 31
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.44 E-value=9.6e-13 Score=103.42 Aligned_cols=116 Identities=29% Similarity=0.285 Sum_probs=82.9
Q ss_pred EEEeecCCCCChhhHH---HHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCCCCCcccc
Q 019979 140 AVAGDLGQTGWTKSTL---DHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDA 216 (333)
Q Consensus 140 ~~~gD~~~~~~~~~~~---~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~~~~~~~~ 216 (333)
+++||+|......... ....+.++|+||++||+++..... .+..+...........|+++++||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~~vi~~GD~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~GNHD---------- 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDGPDP-EEVLAAALALLLLLGIPVYVVPGNHD---------- 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCCEEEECCcccCCCCCc-hHHHHHHHHHhhcCCCCEEEeCCCce----------
Confidence 4689999875443332 355678999999999999865543 33333222333345599999999999
Q ss_pred ccccccccccCcCCCCCCCCceEEEEeCCEEEEEEeccCCCCCCHHHHHHHHHHhhcccCCCCCeEEEEeccccccCCCC
Q 019979 217 FQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEA 296 (333)
Q Consensus 217 ~~~~~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~ 296 (333)
|+++|.|++.....
T Consensus 70 ------------------------------------------------------------------i~~~H~~~~~~~~~ 83 (131)
T cd00838 70 ------------------------------------------------------------------ILLTHGPPYDPLDE 83 (131)
T ss_pred ------------------------------------------------------------------EEEeccCCCCCchh
Confidence 89999998765543
Q ss_pred CCCCChhHHHHHHHHHHhCCCcEEEecCcccccccc
Q 019979 297 HQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSV 332 (333)
Q Consensus 297 ~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~R~~ 332 (333)
........+..+..++.+.+++++|+||.|.+.++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 119 (131)
T cd00838 84 LSPDEDPGSEALLELLEKYGVDLVLSGHTHVYERRE 119 (131)
T ss_pred hcccchhhHHHHHHHHHHhCCCEEEeCCeecccccc
Confidence 222222246788888999999999999999998764
No 32
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.44 E-value=4e-12 Score=111.95 Aligned_cols=199 Identities=21% Similarity=0.285 Sum_probs=110.0
Q ss_pred eeEEECCCCCCCeeEEEEeecCCCCCh--------------------hhHHHH-hhcCCCCeEEccccccccccchhhHH
Q 019979 125 EFEFKTPPAQFPITFAVAGDLGQTGWT--------------------KSTLDH-IGQCKYDVHLLPGDLSYADYMQHRWD 183 (333)
Q Consensus 125 ~~~F~t~p~~~~~~f~~~gD~~~~~~~--------------------~~~~~~-i~~~~~d~vl~~GDl~~~~~~~~~~~ 183 (333)
.++|+. .++|||+.++|+|.+... ...++. ++.++||+|+++||+++.....+.-.
T Consensus 45 ~lr~~~---~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t~Da~~ 121 (379)
T KOG1432|consen 45 KLRFRE---DGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHSTQDAAT 121 (379)
T ss_pred eeeecC---CCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCcccccccHhHHH
Confidence 344544 678999999999876431 123333 35899999999999998755444445
Q ss_pred HHHHhhhhh-hcCCceEEccCCCCCCCCCCccccccccccccccCcC--CCCCCCCceE-EEEeCC--------------
Q 019979 184 TFGELVQPL-ASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFE--ESGSNSNLYY-SFDVAG-------------- 245 (333)
Q Consensus 184 ~~~~~~~~l-~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~y-s~~~g~-------------- 245 (333)
.++..+.+. ..++||.++.||||-...-. ......+... +|.. ...+....-| ...+|+
T Consensus 122 sl~kAvaP~I~~~IPwA~~lGNHDdes~lt-r~ql~~~i~~--lP~s~~~v~p~dg~~~~~~g~gnyn~~i~~~~ds~~~ 198 (379)
T KOG1432|consen 122 SLMKAVAPAIDRKIPWAAVLGNHDDESDLT-RLQLMKFISK--LPYSLSQVNPPDGHMYIIDGFGNYNLQIEGAIDSELE 198 (379)
T ss_pred HHHHHhhhHhhcCCCeEEEecccccccccC-HHHHHHHHhc--CCCccccCCCcccceeeeecccceEEEeccCCCcccc
Confidence 566677776 44599999999999854211 0111111111 1111 0000001111 111121
Q ss_pred ----EEEEEEeccCC---------CC-CCHHHHHHHHHHhhccc---CCCCC-eEEEEeccccc--cCCCC---CCC---
Q 019979 246 ----AHLIMLGSYAD---------YD-EYSDQYRWLKDDLSKVD---RKKTP-WLLVLLHVPWY--NSNEA---HQG--- 299 (333)
Q Consensus 246 ----v~fi~lds~~~---------~~-~~~~q~~WL~~~L~~~~---~~~~~-~~iv~~H~P~~--~~~~~---~~~--- 299 (333)
..+++||+..+ |+ ..+.|.+||+..-.+-+ ..-.| --+++.|.|+- ..-.. ..+
T Consensus 199 ~~sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P~p~La~~HIP~~E~~~~~~~tp~~g~~~ 278 (379)
T KOG1432|consen 199 NKSVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNPQPGLAFFHIPLPEFLELESKTPLIGVFQ 278 (379)
T ss_pred cCceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhhhhcccCccCCCCceEEEEcccHHHhhccCCCcccceee
Confidence 23455555321 11 24789999998773311 11112 36888999973 21111 000
Q ss_pred C---ChhHHHHHHHHHH-hCCCcEEEecCccccc
Q 019979 300 E---GDGMMAIMEPLLY-AASVDLVLAGHVHAYE 329 (333)
Q Consensus 300 ~---~~~~~~~l~~l~~-~~~v~lvl~GH~H~y~ 329 (333)
+ .......+...|. ..+|+.|++||+|...
T Consensus 279 E~~~~~~~~sg~~~~L~~r~~Vk~vf~GHdHvND 312 (379)
T KOG1432|consen 279 EGVSASKHNSGFLTTLVNRGNVKGVFCGHDHVND 312 (379)
T ss_pred ccccccccccHHHHHHHhccCcceEEeccccccc
Confidence 1 0112345666666 7799999999999753
No 33
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.42 E-value=1.5e-12 Score=104.01 Aligned_cols=117 Identities=18% Similarity=0.160 Sum_probs=78.3
Q ss_pred eEEEEeecCCCCChhhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCCCCCccccc
Q 019979 138 TFAVAGDLGQTGWTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAF 217 (333)
Q Consensus 138 ~f~~~gD~~~~~~~~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~~~~~~~~~ 217 (333)
||+++||+|.... .+...++|+++++||+++.+. ..+++.+.+.++.+.. .+++.++||||...
T Consensus 1 ~i~~isD~H~~~~------~~~~~~~D~vi~~GD~~~~~~-~~~~~~~~~~l~~~~~-~~~~~v~GNHD~~~-------- 64 (135)
T cd07379 1 RFVCISDTHSRHR------TISIPDGDVLIHAGDLTERGT-LEELQKFLDWLKSLPH-PHKIVIAGNHDLTL-------- 64 (135)
T ss_pred CEEEEeCCCCCCC------cCcCCCCCEEEECCCCCCCCC-HHHHHHHHHHHHhCCC-CeEEEEECCCCCcC--------
Confidence 5899999996643 334578999999999987543 2344445555554431 23578999999720
Q ss_pred cccccccccCcCCCCCCCCceEEEEeCCEEEEEEeccCCCCCCHHHHHHHHHHhhcccCCCCCeEEEEeccccccCCCCC
Q 019979 218 QSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAH 297 (333)
Q Consensus 218 ~~~~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~ 297 (333)
. . .+ ..|+++|.|++......
T Consensus 65 ------------------~-------------------------------------~--~~--~~ilv~H~~p~~~~~~~ 85 (135)
T cd07379 65 ------------------D-------------------------------------P--ED--TDILVTHGPPYGHLDLV 85 (135)
T ss_pred ------------------C-------------------------------------C--CC--CEEEEECCCCCcCcccc
Confidence 0 1 12 37899999987654332
Q ss_pred CCCChhHHHHHHHHHHhCCCcEEEecCccccc
Q 019979 298 QGEGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (333)
Q Consensus 298 ~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~ 329 (333)
........+.+.+++++.+++++++||+|...
T Consensus 86 ~~~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~ 117 (135)
T cd07379 86 SSGQRVGCEELLNRVQRVRPKLHVFGHIHEGY 117 (135)
T ss_pred ccCcccCCHHHHHHHHHHCCcEEEEcCcCCcC
Confidence 21111223667888889999999999999863
No 34
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=99.34 E-value=5e-12 Score=105.66 Aligned_cols=108 Identities=15% Similarity=0.267 Sum_probs=68.6
Q ss_pred HhhcCCCCeEEccccccccccc--hhhHHHHHHhhhhh---hcCCceEEccCCCCCCCCCCccccccccccccccCcCCC
Q 019979 157 HIGQCKYDVHLLPGDLSYADYM--QHRWDTFGELVQPL---ASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEES 231 (333)
Q Consensus 157 ~i~~~~~d~vl~~GDl~~~~~~--~~~~~~~~~~~~~l---~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~ 231 (333)
.+...+||+|+++||+++.+.. ..+|....+-+.++ ...+|++.++||||.++.... ....-.++|.
T Consensus 37 a~~~l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~~~~--~~~~~v~RF~------ 108 (195)
T cd08166 37 ALNFVQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEEED--PIESKIRRFE------ 108 (195)
T ss_pred HHhccCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCCCCC--cCHHHHHHHH------
Confidence 3456799999999999997664 22343332222222 224899999999999632110 0000111110
Q ss_pred CCCCCceEEEEeCCEEEEEEeccCCCCCCHHHHHHHHHHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHH
Q 019979 232 GSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPL 311 (333)
Q Consensus 232 ~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l 311 (333)
.+ | |+++|.|+..... ..+..+
T Consensus 109 -----~~------------------------------------------F-i~lsH~P~~~~~~----------~~~~~~ 130 (195)
T cd08166 109 -----KY------------------------------------------F-IMLSHVPLLAEGG----------QALKHV 130 (195)
T ss_pred -----Hh------------------------------------------h-eeeeccccccccc----------HHHHHH
Confidence 00 1 8999999865322 366778
Q ss_pred HHhCCCcEEEecCcccccc
Q 019979 312 LYAASVDLVLAGHVHAYER 330 (333)
Q Consensus 312 ~~~~~v~lvl~GH~H~y~R 330 (333)
+.+++++++|+||.|.+..
T Consensus 131 ~~~~~p~~Ifs~H~H~s~~ 149 (195)
T cd08166 131 VTDLDPDLIFSAHRHKSSI 149 (195)
T ss_pred HHhcCceEEEEcCccceee
Confidence 8999999999999998754
No 35
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.32 E-value=3.7e-11 Score=103.66 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=44.9
Q ss_pred eeEEEEeecCCCCChhhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCC
Q 019979 137 ITFAVAGDLGQTGWTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKES 209 (333)
Q Consensus 137 ~~f~~~gD~~~~~~~~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~ 209 (333)
+||+++||+|.... ....+.+++.+||+|+++||+++.. ..+.+.+..+ ..|+++++||||...
T Consensus 1 ~rIa~isDiHg~~~-~~~~~~l~~~~pD~Vl~~GDi~~~~------~~~~~~l~~l--~~p~~~V~GNHD~~~ 64 (238)
T cd07397 1 LRIAIVGDVHGQWD-LEDIKALHLLQPDLVLFVGDFGNES------VQLVRAISSL--PLPKAVILGNHDAWY 64 (238)
T ss_pred CEEEEEecCCCCch-HHHHHHHhccCCCEEEECCCCCcCh------HHHHHHHHhC--CCCeEEEcCCCcccc
Confidence 58999999996533 3334566778999999999998521 1222233332 279999999999854
No 36
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.31 E-value=7.1e-12 Score=111.69 Aligned_cols=75 Identities=16% Similarity=0.108 Sum_probs=60.8
Q ss_pred CCCeeEEEEeecCCCCCh---hhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCC
Q 019979 134 QFPITFAVAGDLGQTGWT---KSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKES 209 (333)
Q Consensus 134 ~~~~~f~~~gD~~~~~~~---~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~ 209 (333)
..+++++.++|+|..... .+.+..+.+..||+|+++||+++. ......+...+.++++.+..+++++.||||+..
T Consensus 42 ~~~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~DlivltGD~~~~-~~~~~~~~~~~~L~~L~~~~gv~av~GNHd~~~ 119 (284)
T COG1408 42 LQGLKIVQLSDLHSLPFREEKLALLIAIANELPDLIVLTGDYVDG-DRPPGVAALALFLAKLKAPLGVFAVLGNHDYGV 119 (284)
T ss_pred cCCeEEEEeehhhhchhhHHHHHHHHHHHhcCCCEEEEEeeeecC-CCCCCHHHHHHHHHhhhccCCEEEEeccccccc
Confidence 578999999999987665 345556667888999999999985 223556777888899988899999999999964
No 37
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.27 E-value=2.3e-11 Score=106.92 Aligned_cols=72 Identities=17% Similarity=0.099 Sum_probs=49.1
Q ss_pred eeEEEEeecCCCCChh----hHHHHhh--cCCCCeEEccccccccc---c-chhhHHHHHHhhhhhhcC-CceEEccCCC
Q 019979 137 ITFAVAGDLGQTGWTK----STLDHIG--QCKYDVHLLPGDLSYAD---Y-MQHRWDTFGELVQPLASA-RPWMVTQGNH 205 (333)
Q Consensus 137 ~~f~~~gD~~~~~~~~----~~~~~i~--~~~~d~vl~~GDl~~~~---~-~~~~~~~~~~~~~~l~~~-~P~~~~~GNH 205 (333)
.+++++||+|.+.... ..++.+. ..+||+|+++||+++.- . .........+.++.+... +|++.++|||
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNH 80 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNR 80 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 3789999999765432 2334332 46899999999999631 1 112234455666666555 8999999999
Q ss_pred CCC
Q 019979 206 EKE 208 (333)
Q Consensus 206 D~~ 208 (333)
|..
T Consensus 81 D~~ 83 (241)
T PRK05340 81 DFL 83 (241)
T ss_pred chh
Confidence 984
No 38
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.27 E-value=3.9e-11 Score=100.41 Aligned_cols=175 Identities=19% Similarity=0.221 Sum_probs=90.8
Q ss_pred eeEEEEeecCCCC-ChhhHHHHhhcCCCCeEEccccccccccchhhHH--------------------------HHHHhh
Q 019979 137 ITFAVAGDLGQTG-WTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWD--------------------------TFGELV 189 (333)
Q Consensus 137 ~~f~~~gD~~~~~-~~~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~--------------------------~~~~~~ 189 (333)
-++++++|.+..- ...++++.+...+||+|+++||+.-......+|. .|++.+
T Consensus 6 ~kilA~s~~~g~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~~L 85 (255)
T PF14582_consen 6 RKILAISNFRGDFELLERLVEVIPEKGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALDKFFRIL 85 (255)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHHHH
T ss_pred hhheeecCcchHHHHHHHHHhhccccCCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHHHH
Confidence 4789999986432 2345666667889999999999986655566666 455555
Q ss_pred hhhhcCCceEEccCCCCCCCCCCccccccccccccccCcCCCCCCCCceEEEEeCCEEEEEEeccC-CCC--C------C
Q 019979 190 QPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYA-DYD--E------Y 260 (333)
Q Consensus 190 ~~l~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~-~~~--~------~ 260 (333)
..+. +|++++|||||........ ..|....-.|.-. . -...+.+--|.+.|+.+..+- +.. . .
T Consensus 86 ~~~~--~p~~~vPG~~Dap~~~~lr---~a~~~e~v~p~~~-~--vH~sf~~~~g~y~v~G~GGeI~~~~~~~~~~LrYP 157 (255)
T PF14582_consen 86 GELG--VPVFVVPGNMDAPERFFLR---EAYNAEIVTPHIH-N--VHESFFFWKGEYLVAGMGGEITDDQREEEFKLRYP 157 (255)
T ss_dssp HCC---SEEEEE--TTS-SHHHHHH---HHHHCCCC-TTEE-E---CTCEEEETTTEEEEEE-SEEESSS-BCSSS-EEE
T ss_pred HhcC--CcEEEecCCCCchHHHHHH---HHhccceecccee-e--eeeeecccCCcEEEEecCccccCCCccccccccch
Confidence 5444 9999999999984211100 0111111111100 0 011223333457777776531 110 0 1
Q ss_pred HHHHHHHHHHhhcccCCCCCeEEEEecccc-ccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCccc
Q 019979 261 SDQYRWLKDDLSKVDRKKTPWLLVLLHVPW-YNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHA 327 (333)
Q Consensus 261 ~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~-~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~ 327 (333)
....+|..+.|...+ +.+ +|++.|.|+ ...+..+. ..+.+.+++++++.+++||||.|-
T Consensus 158 ~weaey~lk~l~elk--~~r-~IlLfhtpPd~~kg~~h~-----GS~~V~dlIk~~~P~ivl~Ghihe 217 (255)
T PF14582_consen 158 AWEAEYSLKFLRELK--DYR-KILLFHTPPDLHKGLIHV-----GSAAVRDLIKTYNPDIVLCGHIHE 217 (255)
T ss_dssp HHHHHHHHGGGGGCT--SSE-EEEEESS-BTBCTCTBTT-----SBHHHHHHHHHH--SEEEE-SSS-
T ss_pred HHHHHHHHHHHHhcc--ccc-EEEEEecCCccCCCcccc-----cHHHHHHHHHhcCCcEEEeccccc
Confidence 234456666666653 223 788899998 33322222 347899999999999999999985
No 39
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.25 E-value=7.6e-11 Score=98.97 Aligned_cols=174 Identities=18% Similarity=0.188 Sum_probs=105.8
Q ss_pred CCeeEEEEeecCCCCC-hhhHHHHhhcCCCCeEEcccccc--ccccchhhHHHHHHhhhhhh-cCCceEEccCCCCCCCC
Q 019979 135 FPITFAVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLS--YADYMQHRWDTFGELVQPLA-SARPWMVTQGNHEKESI 210 (333)
Q Consensus 135 ~~~~f~~~gD~~~~~~-~~~~~~~i~~~~~d~vl~~GDl~--~~~~~~~~~~~~~~~~~~l~-~~~P~~~~~GNHD~~~~ 210 (333)
..+|+++++|.|.... ..+.++.+...++|+++++||++ +.+.....-+.. .++.+. ..+|+++++||-|-...
T Consensus 2 ~~mkil~vtDlHg~~~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~~~~~--~~e~l~~~~~~v~avpGNcD~~~v 79 (226)
T COG2129 2 KKMKILAVTDLHGSEDSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEVAEELN--KLEALKELGIPVLAVPGNCDPPEV 79 (226)
T ss_pred CcceEEEEeccccchHHHHHHHHHHhhccCCEEEEecceehhhcCchHHHHhhh--HHHHHHhcCCeEEEEcCCCChHHH
Confidence 3579999999997754 34556666677999999999999 433321111110 034444 34999999999887321
Q ss_pred CCccccccccccccccCcCCCCCCCCceEEEEeCCEEEEEEecc--CCC----CCCH-HHHHHHHHHhhcccCCCCCeEE
Q 019979 211 PLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSY--ADY----DEYS-DQYRWLKDDLSKVDRKKTPWLL 283 (333)
Q Consensus 211 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~--~~~----~~~~-~q~~WL~~~L~~~~~~~~~~~i 283 (333)
. ... +.....- .--+.++|++.|+.+--. +.+ ...+ +-+.-|++.+++.+. .-.|
T Consensus 80 ~------~~l-~~~~~~v--------~~~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~~~---~~~I 141 (226)
T COG2129 80 I------DVL-KNAGVNV--------HGRVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKADN---PVNI 141 (226)
T ss_pred H------HHH-Hhccccc--------ccceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhcccC---cceE
Confidence 1 101 1010000 014567777777774421 111 1123 333455555555432 1139
Q ss_pred EEeccccccCCCCC-CCCChhHHHHHHHHHHhCCCcEEEecCcccc
Q 019979 284 VLLHVPWYNSNEAH-QGEGDGMMAIMEPLLYAASVDLVLAGHVHAY 328 (333)
Q Consensus 284 v~~H~P~~~~~~~~-~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y 328 (333)
+++|.||++..... .+........+.+++++.++.+.+|||.|-+
T Consensus 142 l~~HaPP~gt~~d~~~g~~hvGS~~vr~~ieefqP~l~i~GHIHEs 187 (226)
T COG2129 142 LLTHAPPYGTLLDTPSGYVHVGSKAVRKLIEEFQPLLGLHGHIHES 187 (226)
T ss_pred EEecCCCCCccccCCCCccccchHHHHHHHHHhCCceEEEeeeccc
Confidence 99999999876542 1112345688999999999999999999964
No 40
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=99.23 E-value=3.4e-11 Score=99.93 Aligned_cols=51 Identities=24% Similarity=0.393 Sum_probs=36.3
Q ss_pred hhcCCCCeEEccccccccccc--hhhHHHHHHhhhhhh-------cCCceEEccCCCCCC
Q 019979 158 IGQCKYDVHLLPGDLSYADYM--QHRWDTFGELVQPLA-------SARPWMVTQGNHEKE 208 (333)
Q Consensus 158 i~~~~~d~vl~~GDl~~~~~~--~~~~~~~~~~~~~l~-------~~~P~~~~~GNHD~~ 208 (333)
+...+||+||++||+++.... ...|....+.+..+. ..+|++.++||||..
T Consensus 41 i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g 100 (171)
T cd07384 41 LQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIG 100 (171)
T ss_pred HHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccC
Confidence 357899999999999986543 234654444343332 158999999999995
No 41
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=99.21 E-value=1.9e-10 Score=108.77 Aligned_cols=172 Identities=22% Similarity=0.321 Sum_probs=101.6
Q ss_pred hhHHHHhh--cCCCCeEEccccccccccc----hhhH---HHHHHhhhhhhcCCceEEccCCCCCCCCCCcccc------
Q 019979 152 KSTLDHIG--QCKYDVHLLPGDLSYADYM----QHRW---DTFGELVQPLASARPWMVTQGNHEKESIPLIMDA------ 216 (333)
Q Consensus 152 ~~~~~~i~--~~~~d~vl~~GDl~~~~~~----~~~~---~~~~~~~~~l~~~~P~~~~~GNHD~~~~~~~~~~------ 216 (333)
..+++.|+ ..++|+|+++||++..+.. +... ....+.+......+|+|++.||||......+...
T Consensus 198 es~L~~ike~~~~iD~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N~F~~~~~~~~~ 277 (577)
T KOG3770|consen 198 ESALDHIKENHKDIDYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVNLFAPGSVPKRH 277 (577)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCCcHhhcCCCCCcchh
Confidence 35666665 3449999999999864421 1111 2233455556667999999999999643221100
Q ss_pred -----ccccccccc--cCcCCCC-CCCCceEEEE-eCCEEEEEEeccCCC----------CCCHHHHHHHHHHhhcccCC
Q 019979 217 -----FQSYNARWK--MPFEESG-SNSNLYYSFD-VAGAHLIMLGSYADY----------DEYSDQYRWLKDDLSKVDRK 277 (333)
Q Consensus 217 -----~~~~~~~~~--~p~~~~~-~~~~~~ys~~-~g~v~fi~lds~~~~----------~~~~~q~~WL~~~L~~~~~~ 277 (333)
+..+...|. +|..... ...+.+|.-. ++|.++|+||+..-+ ....+|++|+..+|.++..+
T Consensus 278 ~~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~~ae~~ 357 (577)
T KOG3770|consen 278 SQLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQEAESA 357 (577)
T ss_pred hhhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCchHHhhHHHHHHHHHHhc
Confidence 011111111 3332211 1235566543 689999999995321 22478899999999988664
Q ss_pred CCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhC--CCcEEEecCccccc
Q 019979 278 KTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAA--SVDLVLAGHVHAYE 329 (333)
Q Consensus 278 ~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~--~v~lvl~GH~H~y~ 329 (333)
+.+ +=+++|.|+-.. ....+. ...+-.++.++ -+...|.||.|.-+
T Consensus 358 Gek-Vhil~HIPpG~~-~c~~~w----s~~f~~iv~r~~~tI~gqf~GH~h~d~ 405 (577)
T KOG3770|consen 358 GEK-VHILGHIPPGDG-VCLEGW----SINFYRIVNRFRSTIAGQFYGHTHIDE 405 (577)
T ss_pred CCE-EEEEEeeCCCCc-chhhhh----hHHHHHHHHHHHHhhhhhccccCccee
Confidence 443 888999997531 112222 23444455554 25567999999643
No 42
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.20 E-value=3.3e-11 Score=98.33 Aligned_cols=122 Identities=26% Similarity=0.320 Sum_probs=71.7
Q ss_pred eeEEEEeecCCCCCh-hhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCCCCCccc
Q 019979 137 ITFAVAGDLGQTGWT-KSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMD 215 (333)
Q Consensus 137 ~~f~~~gD~~~~~~~-~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~~~~~~~ 215 (333)
+||+++||+|..... .++++.+ .++|+|+++||+++. ..+.+.++.+ |++++.||||...
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~--~~~d~vi~~GDi~~~-------~~~~~~~~~~----~~~~v~GNHD~~~------ 61 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI--NEPDFVIILGDIFDP-------EEVLELLRDI----PVYVVRGNHDNWA------ 61 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH--TTESEEEEES-SCSH-------HHHHHHHHHH----EEEEE--CCHSTH------
T ss_pred CEEEEEeCCCCChhHHHHHHHHh--cCCCEEEECCCchhH-------HHHHHHHhcC----CEEEEeCCccccc------
Confidence 589999999986432 4566666 569999999999861 3333333333 9999999999731
Q ss_pred cccccccccccCcCCCCCCCCceEEEEeCCEEEEEEeccCCCCCCHHHHHHHHHHhhcccCCCCCeEEEEeccccccCCC
Q 019979 216 AFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNE 295 (333)
Q Consensus 216 ~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~ 295 (333)
+...... .. +.+.+.. .-....|+++|.+++....
T Consensus 62 ----~~~~~~~---------~~-----------------------------~~~~~~~---~~~~~~i~~~H~~~~~~~~ 96 (156)
T PF12850_consen 62 ----FPNENDE---------EY-----------------------------LLDALRL---TIDGFKILLSHGHPYDVQW 96 (156)
T ss_dssp ----HHSEECT---------CS-----------------------------SHSEEEE---EETTEEEEEESSTSSSSTT
T ss_pred ----chhhhhc---------cc-----------------------------cccceee---eecCCeEEEECCCCccccc
Confidence 1100000 00 1111110 0113588889987655321
Q ss_pred CCCCCChhHHHHHHHHHHhCCCcEEEecCcccccc
Q 019979 296 AHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYER 330 (333)
Q Consensus 296 ~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~R 330 (333)
..+.+..++...+++++++||.|....
T Consensus 97 --------~~~~~~~~~~~~~~~~~~~GH~H~~~~ 123 (156)
T PF12850_consen 97 --------DPAELREILSRENVDLVLHGHTHRPQV 123 (156)
T ss_dssp --------THHHHHHHHHHTTSSEEEESSSSSEEE
T ss_pred --------ChhhhhhhhcccCCCEEEcCCcccceE
Confidence 234566788899999999999998654
No 43
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.12 E-value=9.4e-10 Score=96.02 Aligned_cols=69 Identities=19% Similarity=0.139 Sum_probs=46.9
Q ss_pred EEEeecCCCCCh----hhHHHHhhc--CCCCeEEccccccccc----cchhhHHHHHHhhhhhhc-CCceEEccCCCCCC
Q 019979 140 AVAGDLGQTGWT----KSTLDHIGQ--CKYDVHLLPGDLSYAD----YMQHRWDTFGELVQPLAS-ARPWMVTQGNHEKE 208 (333)
Q Consensus 140 ~~~gD~~~~~~~----~~~~~~i~~--~~~d~vl~~GDl~~~~----~~~~~~~~~~~~~~~l~~-~~P~~~~~GNHD~~ 208 (333)
+++||+|.+... +..++.+.+ .+||+|+++||+++.- ......+.+.+.++.+.. ..|+++++||||..
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD~~ 81 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEARKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRDFL 81 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhhccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCchh
Confidence 689999977532 334555543 3799999999999631 112223445556666655 38999999999984
No 44
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=99.12 E-value=5.3e-10 Score=91.34 Aligned_cols=51 Identities=24% Similarity=0.350 Sum_probs=35.4
Q ss_pred hhcCCCCeEEccccccccccc--hhhHHHHHHhhhhhhc---CCceEEccCCCCCC
Q 019979 158 IGQCKYDVHLLPGDLSYADYM--QHRWDTFGELVQPLAS---ARPWMVTQGNHEKE 208 (333)
Q Consensus 158 i~~~~~d~vl~~GDl~~~~~~--~~~~~~~~~~~~~l~~---~~P~~~~~GNHD~~ 208 (333)
+...+||+|+++||+++.... ...|..+...+..+.. ..|++.++||||..
T Consensus 34 i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 34 LWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIG 89 (156)
T ss_pred HHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcC
Confidence 447899999999999975432 3445444433333322 48999999999984
No 45
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.11 E-value=4.9e-10 Score=88.58 Aligned_cols=103 Identities=19% Similarity=0.185 Sum_probs=67.9
Q ss_pred EEEeecCCCCChhhHHHHh--hcCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCCCCCccccc
Q 019979 140 AVAGDLGQTGWTKSTLDHI--GQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAF 217 (333)
Q Consensus 140 ~~~gD~~~~~~~~~~~~~i--~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~~~~~~~~~ 217 (333)
+++||+|.. ...++.+ ...++|.++++||+.. ... ..+..+ ...|++.+.||||
T Consensus 1 ~viSDtH~~---~~~~~~~~~~~~~~d~ii~~GD~~~-----~~~----~~~~~~-~~~~~~~V~GN~D----------- 56 (129)
T cd07403 1 LVISDTESP---ALYSPEIKVRLEGVDLILSAGDLPK-----EYL----EYLVTM-LNVPVYYVHGNHD----------- 56 (129)
T ss_pred CeeccccCc---cccchHHHhhCCCCCEEEECCCCCh-----HHH----HHHHHH-cCCCEEEEeCCCc-----------
Confidence 479999943 2233332 2588999999999852 112 222222 2368999999999
Q ss_pred cccccccccCcCCCCCCCCceEEEEeCCEEEEEEeccCCCCCCHHHHHHHHHHhhcccCCCCCeEEEEeccccccCCCCC
Q 019979 218 QSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAH 297 (333)
Q Consensus 218 ~~~~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~ 297 (333)
.+|+++|+|++......
T Consensus 57 ---------------------------------------------------------------~~Ilv~H~pp~~~~~~~ 73 (129)
T cd07403 57 ---------------------------------------------------------------VDILLTHAPPAGIGDGE 73 (129)
T ss_pred ---------------------------------------------------------------cCEEEECCCCCcCcCcc
Confidence 25888898876443211
Q ss_pred CCCChhHHHHHHHHHHhCCCcEEEecCcccccc
Q 019979 298 QGEGDGMMAIMEPLLYAASVDLVLAGHVHAYER 330 (333)
Q Consensus 298 ~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~R 330 (333)
. ......+.+.+++.+++++++|+||.|....
T Consensus 74 ~-~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~ 105 (129)
T cd07403 74 D-FAHRGFEAFLDFIDRFRPKLFIHGHTHLNYG 105 (129)
T ss_pred c-ccccCHHHHHHHHHHHCCcEEEEcCcCCCcC
Confidence 1 0112346788888999999999999997543
No 46
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=99.06 E-value=3.3e-09 Score=92.37 Aligned_cols=120 Identities=18% Similarity=0.128 Sum_probs=75.5
Q ss_pred eEEEEeecCCCCChhhHHHHhh----cCCCCeEEccccccccccc---------------------hhhH----HHH--H
Q 019979 138 TFAVAGDLGQTGWTKSTLDHIG----QCKYDVHLLPGDLSYADYM---------------------QHRW----DTF--G 186 (333)
Q Consensus 138 ~f~~~gD~~~~~~~~~~~~~i~----~~~~d~vl~~GDl~~~~~~---------------------~~~~----~~~--~ 186 (333)
||++.|+.+...........+. +.+||++|++||.+|.+.. ...+ ..+ .
T Consensus 1 r~a~~SC~~~~~~~~~~~~~~~~~~~~~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~~ 80 (228)
T cd07389 1 RFAFGSCNKYESGYFNAYRALAYDHSEEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRSD 80 (228)
T ss_pred CEEEEECCCCCCCCcHHHHHHhhhccccCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcCC
Confidence 5778888766544444445553 7899999999999998752 1111 111 1
Q ss_pred HhhhhhhcCCceEEccCCCCCCCCCCcc---------------ccccccccccccCcCCCC--CCCCceEEEEeCCE-EE
Q 019979 187 ELVQPLASARPWMVTQGNHEKESIPLIM---------------DAFQSYNARWKMPFEESG--SNSNLYYSFDVAGA-HL 248 (333)
Q Consensus 187 ~~~~~l~~~~P~~~~~GNHD~~~~~~~~---------------~~~~~~~~~~~~p~~~~~--~~~~~~ys~~~g~v-~f 248 (333)
..++.+.+.+|++.++.+||+.++.... .....|......+..... .....|+++.+|.. .|
T Consensus 81 p~~~~~~~~~p~~~iwDDHDi~~n~~~~~~~~~~~~~~~~~~~~a~~ay~e~~~~~~~~~~~~~~~~~y~~~~~G~~~~~ 160 (228)
T cd07389 81 PDLQRLLAQVPTIGIWDDHDIGDNWGGDGAWVQDSPVFYARKAAARQAYLEFQPVRNPSPRRGGRGGIYRSFRFGDLVDL 160 (228)
T ss_pred HHHHHHhhcCCEEEeccccccccccccccccccCcchHHHHHHHHHHHHHHHcCCCCCCccCCCCceEEEEEecCCcceE
Confidence 2456677779999999999997543210 111233333332222111 23478999999986 99
Q ss_pred EEEeccCCC
Q 019979 249 IMLGSYADY 257 (333)
Q Consensus 249 i~lds~~~~ 257 (333)
++||+....
T Consensus 161 ~~lD~R~~R 169 (228)
T cd07389 161 ILLDTRTYR 169 (228)
T ss_pred EEEeccccc
Confidence 999997543
No 47
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=98.99 E-value=4.1e-09 Score=93.27 Aligned_cols=175 Identities=15% Similarity=0.082 Sum_probs=90.8
Q ss_pred eeEEEEeecCCCC------C----hhhHHHHhhcCCCC-eEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCC
Q 019979 137 ITFAVAGDLGQTG------W----TKSTLDHIGQCKYD-VHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNH 205 (333)
Q Consensus 137 ~~f~~~gD~~~~~------~----~~~~~~~i~~~~~d-~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNH 205 (333)
++|+.++|+|... . ...+++++++.+|| +++.+||++....... +......++.+...-.-+.++|||
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~-~~~~~~~~~~l~~~g~d~~~~GNH 79 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPST-ATKGEANIELMNALGYDAVTIGNH 79 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchh-ccCCcHHHHHHHhcCCCEEeeccc
Confidence 5899999999432 1 13566777777788 7899999987544311 111122233332223456678999
Q ss_pred CCCCCCCccccccccccccccCc---C----C---CCCCCCceEEEEeCCEEEE--EEeccCCCC-------C---CHHH
Q 019979 206 EKESIPLIMDAFQSYNARWKMPF---E----E---SGSNSNLYYSFDVAGAHLI--MLGSYADYD-------E---YSDQ 263 (333)
Q Consensus 206 D~~~~~~~~~~~~~~~~~~~~p~---~----~---~~~~~~~~ys~~~g~v~fi--~lds~~~~~-------~---~~~q 263 (333)
|+..... .+....+....|. + . .......|..++.+++++- .+....... . ....
T Consensus 80 e~d~g~~---~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~~~~~~~~~~~~~~~~~~~~~~~ 156 (252)
T cd00845 80 EFDYGLD---ALAELYKDANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGLTTPDTPTYTPLGWIIGLPFEDL 156 (252)
T ss_pred cccccHH---HHHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEeccccceeecCCCcccCceecCH
Confidence 9953221 1221211111110 0 0 0011234556788875544 443321100 0 0122
Q ss_pred HHHHHHHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCcccccc
Q 019979 264 YRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYER 330 (333)
Q Consensus 264 ~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~R 330 (333)
.+.+++..++.+ .+...+|++.|.|... ...+.+.+ .++|++|+||.|....
T Consensus 157 ~~~~~~~~~~~~-~~~D~vIvl~H~g~~~------------~~~la~~~--~giDlvlggH~H~~~~ 208 (252)
T cd00845 157 AEAVAVAEELLA-EGADVIILLSHLGLDD------------DEELAEEV--PGIDVILGGHTHHLLE 208 (252)
T ss_pred HHHHHHHHHHHh-CCCCEEEEEeccCccc------------hHHHHhcC--CCccEEEcCCcCcccC
Confidence 233433222222 3667899999987532 11222212 5899999999998654
No 48
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.96 E-value=5.7e-09 Score=85.58 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=41.7
Q ss_pred eeEEEEeecCCCCCh-hhHHHHhhcC-CCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCC
Q 019979 137 ITFAVAGDLGQTGWT-KSTLDHIGQC-KYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEK 207 (333)
Q Consensus 137 ~~f~~~gD~~~~~~~-~~~~~~i~~~-~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~ 207 (333)
+|++++||+|..... +..++.+... ++|.|+++||++. .. ..+.++.+ ..|++.+.||||.
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~----~~----~~~~l~~~--~~~~~~V~GN~D~ 63 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLTS----PF----VLKEFEDL--AAKVIAVRGNNDG 63 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCCC----HH----HHHHHHHh--CCceEEEccCCCc
Confidence 479999999965432 3344555555 8999999999982 11 12223332 2589999999997
No 49
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.95 E-value=2.1e-09 Score=87.85 Aligned_cols=58 Identities=22% Similarity=0.352 Sum_probs=40.3
Q ss_pred eEEEEeecCCCCC-hhhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCC
Q 019979 138 TFAVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKE 208 (333)
Q Consensus 138 ~f~~~gD~~~~~~-~~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~ 208 (333)
|++++||+|.... ..++++.+.+ +|.|+++||+++...... +....|++.++||||..
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~~--~d~ii~~GD~~~~~~~~~-----------~~~~~~~~~V~GNhD~~ 59 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFGD--VDLIIHAGDVLYPGPLNE-----------LELKAPVIAVRGNCDGE 59 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcC--CCEEEECCccccccccch-----------hhcCCcEEEEeCCCCCc
Confidence 5899999996541 2334444433 999999999987543211 23347899999999983
No 50
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.94 E-value=4e-08 Score=86.80 Aligned_cols=175 Identities=18% Similarity=0.157 Sum_probs=96.0
Q ss_pred EEEEeecCCCCChhhHHH---Hhh---cCCCCeEEccccccccccch-----------hhHHHHHHhhhhhh-cCCceEE
Q 019979 139 FAVAGDLGQTGWTKSTLD---HIG---QCKYDVHLLPGDLSYADYMQ-----------HRWDTFGELVQPLA-SARPWMV 200 (333)
Q Consensus 139 f~~~gD~~~~~~~~~~~~---~i~---~~~~d~vl~~GDl~~~~~~~-----------~~~~~~~~~~~~l~-~~~P~~~ 200 (333)
|++.||+|.. ...+.+ .+. ..++|++|++||+....... ..+..|.+.++... ..+|+++
T Consensus 1 i~v~Gd~HG~--~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~f 78 (262)
T cd00844 1 IAVEGCCHGE--LDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIF 78 (262)
T ss_pred CEEEecCCcc--HHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEE
Confidence 5789999863 333433 222 35799999999995322111 12333444444332 3478899
Q ss_pred ccCCCCCCCCCCccccccccccccccCcCCCCCCCCce-----EEEEeCCEEEEEEeccC---CCC--------CCHHHH
Q 019979 201 TQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLY-----YSFDVAGAHLIMLGSYA---DYD--------EYSDQY 264 (333)
Q Consensus 201 ~~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-----ys~~~g~v~fi~lds~~---~~~--------~~~~q~ 264 (333)
+.||||... .+.. ++..+ -...+.+ ..+++++++|..|.... ++. ..+.++
T Consensus 79 i~GNHE~~~------~l~~------l~~gg-~v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~~~~~~~~~t~~~~ 145 (262)
T cd00844 79 IGGNHEASN------YLWE------LPYGG-WVAPNIYYLGYAGVVNFGGLRIAGLSGIYKSHDYRKGHFERPPYSEDTK 145 (262)
T ss_pred ECCCCCCHH------HHHh------hcCCC-eecCcEEEecCCCEEEECCeEEEEecccccccccccccccCCCCCHHHH
Confidence 999999631 1110 11100 0001222 34667899999987621 111 112333
Q ss_pred HHHH-------HHhhcccCCCCCeEEEEeccccccCCCCCCC---------------CChhHHHHHHHHHHhCCCcEEEe
Q 019979 265 RWLK-------DDLSKVDRKKTPWLLVLLHVPWYNSNEAHQG---------------EGDGMMAIMEPLLYAASVDLVLA 322 (333)
Q Consensus 265 ~WL~-------~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~---------------~~~~~~~~l~~l~~~~~v~lvl~ 322 (333)
..+. ..|..... . --|+++|.|+......... ........+..++++.++++.|+
T Consensus 146 rs~y~~r~~~~~kl~~~~~-~--vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~lkPryhf~ 222 (262)
T cd00844 146 RSAYHVRNIEVFKLKQLKQ-P--IDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHLKPRYWFS 222 (262)
T ss_pred HHhhhhhHHHHHHHHhcCC-C--CcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHHHhCCCEEEE
Confidence 2211 11222211 2 3699999998765332110 00113467889999999999999
Q ss_pred cCccc-cccc
Q 019979 323 GHVHA-YERS 331 (333)
Q Consensus 323 GH~H~-y~R~ 331 (333)
||.|. |++.
T Consensus 223 gH~H~~f~~~ 232 (262)
T cd00844 223 AHLHVKFAAL 232 (262)
T ss_pred ecCCccccee
Confidence 99998 6654
No 51
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=98.91 E-value=1.2e-08 Score=95.38 Aligned_cols=74 Identities=22% Similarity=0.151 Sum_probs=50.3
Q ss_pred CCeeEEEEeecCCCCCh-------------hhHHHHhhcCCCCeEEccccccccccc-hhhHHHHHHhhhh---------
Q 019979 135 FPITFAVAGDLGQTGWT-------------KSTLDHIGQCKYDVHLLPGDLSYADYM-QHRWDTFGELVQP--------- 191 (333)
Q Consensus 135 ~~~~f~~~gD~~~~~~~-------------~~~~~~i~~~~~d~vl~~GDl~~~~~~-~~~~~~~~~~~~~--------- 191 (333)
..+||++++|+|.+... .++++.+.+.++|+||++||+.+.... ......+.+.++.
T Consensus 2 ~~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p~~ 81 (405)
T TIGR00583 2 DTIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKPCE 81 (405)
T ss_pred CceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCccc
Confidence 56899999999976311 234555568899999999999976543 2222222333332
Q ss_pred ---h----------------------hcCCceEEccCCCCCC
Q 019979 192 ---L----------------------ASARPWMVTQGNHEKE 208 (333)
Q Consensus 192 ---l----------------------~~~~P~~~~~GNHD~~ 208 (333)
+ ...+|++++.||||..
T Consensus 82 ~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p 123 (405)
T TIGR00583 82 LEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDP 123 (405)
T ss_pred hhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCc
Confidence 0 1258999999999985
No 52
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.91 E-value=2.5e-08 Score=89.56 Aligned_cols=179 Identities=15% Similarity=0.119 Sum_probs=93.4
Q ss_pred eeEEEEeecCCCCC-----------------hhhHHHHhhcCCCCeEEc-cccccccccchhhH---------HHHHHhh
Q 019979 137 ITFAVAGDLGQTGW-----------------TKSTLDHIGQCKYDVHLL-PGDLSYADYMQHRW---------DTFGELV 189 (333)
Q Consensus 137 ~~f~~~gD~~~~~~-----------------~~~~~~~i~~~~~d~vl~-~GDl~~~~~~~~~~---------~~~~~~~ 189 (333)
++|+.++|+|..-. ....++++++.+|+.+++ +||+...... ..+ ....+.+
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~-~~~~~~~~~~~~~~~~~~l 79 (277)
T cd07410 1 LRILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPL-ADYYAKIEDGDPHPMIAAM 79 (277)
T ss_pred CeEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHH-HHHhhhcccCCCChHHHHH
Confidence 47888999974310 134566666677888776 9999864331 112 1122333
Q ss_pred hhhhcCCceEEccCCCCCCCCCCccccccccccccccCc---C----C-CCCCCCceEEEEeC-CEEEEEEeccCCC---
Q 019979 190 QPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPF---E----E-SGSNSNLYYSFDVA-GAHLIMLGSYADY--- 257 (333)
Q Consensus 190 ~~l~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~p~---~----~-~~~~~~~~ys~~~g-~v~fi~lds~~~~--- 257 (333)
+.+ -+-+.++||||+.... ..+....+....|. | . .......|..++.+ ++++-++.-....
T Consensus 80 n~~---g~d~~~lGNHe~d~g~---~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~kVgviG~~~~~~~~ 153 (277)
T cd07410 80 NAL---GYDAGTLGNHEFNYGL---DYLDKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVGVKVGIIGLTTPQIPN 153 (277)
T ss_pred Hhc---CCCEEeecccCcccCH---HHHHHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCCCEEEEEecCCccccc
Confidence 333 2346678999985322 11222222222221 0 0 01112456678888 8666555532111
Q ss_pred ------------CCCHHHHHHHHHHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHh-CCCcEEEecC
Q 019979 258 ------------DEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYA-ASVDLVLAGH 324 (333)
Q Consensus 258 ------------~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvl~GH 324 (333)
....+..++..+.|++ ++...+|+++|.+........ .. .......+.++ .+||++|+||
T Consensus 154 ~~~~~~~~~~~~~d~~~~~~~~v~~lr~---~~~D~IIvl~H~g~~~~~~~~-~~---~~~~~~~la~~~~~vD~IlgGH 226 (277)
T cd07410 154 WEKPNLIGGLKFTDPVETAKKYVPKLRA---EGADVVVVLAHGGFERDLEES-LT---GENAAYELAEEVPGIDAILTGH 226 (277)
T ss_pred ccCcccCCCcEEcCHHHHHHHHHHHHHH---cCCCEEEEEecCCcCCCcccc-cC---CccHHHHHHhcCCCCcEEEeCC
Confidence 0012233444444443 356789999998865322100 01 11222344444 5899999999
Q ss_pred ccccc
Q 019979 325 VHAYE 329 (333)
Q Consensus 325 ~H~y~ 329 (333)
.|...
T Consensus 227 sH~~~ 231 (277)
T cd07410 227 QHRRF 231 (277)
T ss_pred Ccccc
Confidence 99754
No 53
>PHA02546 47 endonuclease subunit; Provisional
Probab=98.90 E-value=6.4e-08 Score=89.28 Aligned_cols=72 Identities=17% Similarity=0.129 Sum_probs=48.3
Q ss_pred eeEEEEeecCCCCCh-------------hhHHHHhhcCCCCeEEccccccccccc--hhhHHHHHH-hhhhhhc-CCceE
Q 019979 137 ITFAVAGDLGQTGWT-------------KSTLDHIGQCKYDVHLLPGDLSYADYM--QHRWDTFGE-LVQPLAS-ARPWM 199 (333)
Q Consensus 137 ~~f~~~gD~~~~~~~-------------~~~~~~i~~~~~d~vl~~GDl~~~~~~--~~~~~~~~~-~~~~l~~-~~P~~ 199 (333)
+||+++||+|.+... .++++.+.+.+||+||++||+.+.... ........+ +++.+.. .+|++
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~ 80 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLH 80 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 589999999986331 234444568899999999999976422 122222222 2444433 58999
Q ss_pred EccCCCCCC
Q 019979 200 VTQGNHEKE 208 (333)
Q Consensus 200 ~~~GNHD~~ 208 (333)
.++||||..
T Consensus 81 ~I~GNHD~~ 89 (340)
T PHA02546 81 VLVGNHDMY 89 (340)
T ss_pred EEccCCCcc
Confidence 999999984
No 54
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.87 E-value=2.8e-08 Score=88.12 Aligned_cols=172 Identities=19% Similarity=0.231 Sum_probs=89.7
Q ss_pred eeEEEEeecCCCCC-----------hhhHHHHhhcCCCC-eEEccccccccccchh--hHHHHHHhhhhhhcCCceEEcc
Q 019979 137 ITFAVAGDLGQTGW-----------TKSTLDHIGQCKYD-VHLLPGDLSYADYMQH--RWDTFGELVQPLASARPWMVTQ 202 (333)
Q Consensus 137 ~~f~~~gD~~~~~~-----------~~~~~~~i~~~~~d-~vl~~GDl~~~~~~~~--~~~~~~~~~~~l~~~~P~~~~~ 202 (333)
++|+.++|.|.-.. ....++++++.+++ +++.+||++....... ..+...+.++.+ -.-+.++
T Consensus 1 ~~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l---~~d~~~~ 77 (257)
T cd07406 1 FTILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNAL---GVDLACF 77 (257)
T ss_pred CeEEEEccceeecccCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhc---CCcEEee
Confidence 47888888873111 13456666667788 8999999986432211 112222333332 2336689
Q ss_pred CCCCCCCCCCccccccccccccccCc---C----CC-C--CCCCceEEEEeCCEEE--EEEeccCCC------CC---CH
Q 019979 203 GNHEKESIPLIMDAFQSYNARWKMPF---E----ES-G--SNSNLYYSFDVAGAHL--IMLGSYADY------DE---YS 261 (333)
Q Consensus 203 GNHD~~~~~~~~~~~~~~~~~~~~p~---~----~~-~--~~~~~~ys~~~g~v~f--i~lds~~~~------~~---~~ 261 (333)
||||+.... ..+....+....|. | .. . ..-+.|..++.+++++ +.+.+.... .. ..
T Consensus 78 GNHefd~g~---~~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~~~~~~~~~~~~~~~~~~ 154 (257)
T cd07406 78 GNHEFDFGE---DQLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLGLVEEEWLETLTIDPEYVRYR 154 (257)
T ss_pred cccccccCH---HHHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEEEecccccccccCCCCcceEc
Confidence 999995322 12221111111111 0 00 0 0125677888898554 444432111 00 11
Q ss_pred HHHHHHHHHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHh-CCCcEEEecCccccc
Q 019979 262 DQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYA-ASVDLVLAGHVHAYE 329 (333)
Q Consensus 262 ~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvl~GH~H~y~ 329 (333)
+-.+.+++.+++..+.+...+|++.|-+... ... +.++ .++|++|+||.|...
T Consensus 155 d~~~~~~~~v~~~~~~~~D~iVvl~H~g~~~------------d~~---la~~~~~iD~IlgGH~H~~~ 208 (257)
T cd07406 155 DYVETARELVDELREQGADLIIALTHMRLPN------------DKR---LAREVPEIDLILGGHDHEYI 208 (257)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEeccCchh------------hHH---HHHhCCCCceEEecccceeE
Confidence 2233344444333334677899999987421 012 2333 489999999999754
No 55
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.84 E-value=1.1e-08 Score=85.42 Aligned_cols=57 Identities=16% Similarity=0.250 Sum_probs=35.6
Q ss_pred hHHHHhh-cCCCCeEEccccccccccc-hhhHHHH-HHhhhhhh-------------------cCCceEEccCCCCCCC
Q 019979 153 STLDHIG-QCKYDVHLLPGDLSYADYM-QHRWDTF-GELVQPLA-------------------SARPWMVTQGNHEKES 209 (333)
Q Consensus 153 ~~~~~i~-~~~~d~vl~~GDl~~~~~~-~~~~~~~-~~~~~~l~-------------------~~~P~~~~~GNHD~~~ 209 (333)
...+.+. ..+||.|+++||+.+..-. +++|... .++.+.+. ..+|++.++||||.+.
T Consensus 34 ~~~~~~~~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG~ 112 (193)
T cd08164 34 HIVSMMQFWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDVGY 112 (193)
T ss_pred HHHHHHHHhcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccCCC
Confidence 3444443 6799999999999964321 3444332 22222221 1389999999999953
No 56
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=98.81 E-value=2.7e-08 Score=93.76 Aligned_cols=73 Identities=23% Similarity=0.256 Sum_probs=53.6
Q ss_pred eeEEEEeecCCC-CCh-------------hhHHHHhhcCCCCeEEccccccccccc-hhhHHHHHHhhhhhhc-CCceEE
Q 019979 137 ITFAVAGDLGQT-GWT-------------KSTLDHIGQCKYDVHLLPGDLSYADYM-QHRWDTFGELVQPLAS-ARPWMV 200 (333)
Q Consensus 137 ~~f~~~gD~~~~-~~~-------------~~~~~~i~~~~~d~vl~~GDl~~~~~~-~~~~~~~~~~~~~l~~-~~P~~~ 200 (333)
+||++++|+|.+ ... ..+++.+.+.++||||++||+.+.... ...-..+.+.++.+.. .+|+++
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~ 80 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVV 80 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEE
Confidence 589999999988 211 235556678999999999999986543 2333445566666643 599999
Q ss_pred ccCCCCCCC
Q 019979 201 TQGNHEKES 209 (333)
Q Consensus 201 ~~GNHD~~~ 209 (333)
+.||||...
T Consensus 81 I~GNHD~~~ 89 (390)
T COG0420 81 IAGNHDSPS 89 (390)
T ss_pred ecCCCCchh
Confidence 999999953
No 57
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.81 E-value=1.4e-07 Score=78.85 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=40.4
Q ss_pred eEEEEeecCCCCCh----hhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCC
Q 019979 138 TFAVAGDLGQTGWT----KSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEK 207 (333)
Q Consensus 138 ~f~~~gD~~~~~~~----~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~ 207 (333)
+++++||+|..... ..+.+.++..++|.|+++||+++ ...+ +.++.+. .|++.|.||||.
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~~~~d~iih~GDi~~----~~~~----~~l~~~~--~~~~~V~GN~D~ 64 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVPGKIQHVLCTGNLCS----KETY----DYLKTIA--PDVHIVRGDFDE 64 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhccCCCCEEEECCCCCC----HHHH----HHHHhhC--CceEEEECCCCc
Confidence 57999999954332 23444454568999999999985 1222 2233332 479999999997
No 58
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.73 E-value=3.3e-08 Score=85.31 Aligned_cols=174 Identities=14% Similarity=0.093 Sum_probs=85.8
Q ss_pred EEEeecCCCCChh---hHHHHhh-c---CCCCeEEcccccccccc--c---hhhHHH-HHHhhhhhhcCCceEEccCCCC
Q 019979 140 AVAGDLGQTGWTK---STLDHIG-Q---CKYDVHLLPGDLSYADY--M---QHRWDT-FGELVQPLASARPWMVTQGNHE 206 (333)
Q Consensus 140 ~~~gD~~~~~~~~---~~~~~i~-~---~~~d~vl~~GDl~~~~~--~---~~~~~~-~~~~~~~l~~~~P~~~~~GNHD 206 (333)
+++||+|.+.... .....+. . .++|.++++||+++.-. . ...... +...++......+++.++||||
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~v~GNHD 80 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLADRGTRVYYVPGNHD 80 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhccCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHHHCCCeEEEECCCch
Confidence 4799999775432 2222222 2 58999999999996311 1 111122 2334444455689999999999
Q ss_pred CCCCCCccccccccccccccCcCCCCCCCCceEEEEeCCEEEEEEeccCCCCCCHHHHHHHHHHhhcccCCCCCeEEEEe
Q 019979 207 KESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLL 286 (333)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~ 286 (333)
...... +........ .......+.+++.++++.-... ++.......|+...+..... .+.++..
T Consensus 81 ~~~~~~-------~~~~~~~~~-----~~~~~~~~~~~g~~~~~~HG~~-~d~~~~~~~~~~~~~~~~~~---~~~~~~~ 144 (217)
T cd07398 81 FLLGDF-------FAEELGLIL-----LPDPLVHLELDGKRILLEHGDQ-FDTDDRAYQLLRRLGRNPYD---QLLFLNR 144 (217)
T ss_pred HHHHhH-------HHHHcCCEE-----eccceEEEeeCCeEEEEECCCc-CchhHHHHHHHHHHhCcHHH---HHHHhcc
Confidence 842111 000000000 0011215677888888876532 22233344444443221100 0000000
Q ss_pred ccc---------ccc------CCCCCCCCChhHHHHHHHHHHhCCCcEEEecCccccc
Q 019979 287 HVP---------WYN------SNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (333)
Q Consensus 287 H~P---------~~~------~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~ 329 (333)
+.. ... .............+.+..++++++++++++||+|...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~ 202 (217)
T cd07398 145 PLNRRRGIAGGLRWSSRYLKKKVKKAVAIIDVFEEAVARLARRKGVDGVICGHTHRPA 202 (217)
T ss_pred hHHHHHHHHHhhhhhhHHHHhCccchHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 000 000 0000000111234566677788999999999999754
No 59
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.73 E-value=1.9e-07 Score=84.18 Aligned_cols=185 Identities=17% Similarity=0.165 Sum_probs=90.4
Q ss_pred eeEEEEeecCCCCC---------------hhhHHHHhhcCCCC-eEEccccccccccchhhH---HHHHHhhhhhhcCCc
Q 019979 137 ITFAVAGDLGQTGW---------------TKSTLDHIGQCKYD-VHLLPGDLSYADYMQHRW---DTFGELVQPLASARP 197 (333)
Q Consensus 137 ~~f~~~gD~~~~~~---------------~~~~~~~i~~~~~d-~vl~~GDl~~~~~~~~~~---~~~~~~~~~l~~~~P 197 (333)
++|+.++|+|..-. ....++++++..++ +++.+||++........+ ....+.+..+. .-
T Consensus 1 i~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g--~D 78 (288)
T cd07412 1 VQILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGASPFESALLQDEPTIEALNAMG--VD 78 (288)
T ss_pred CeEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCCeEEEeCCcccccccchhhcccCCcHHHHHHhhC--Ce
Confidence 47899999984311 12345555555564 899999998543321111 11222333222 22
Q ss_pred eEEccCCCCCCCCCCccccccccc------------------ccccc-----CcCCCC-CCCCceEEEEeCCEEEEEEec
Q 019979 198 WMVTQGNHEKESIPLIMDAFQSYN------------------ARWKM-----PFEESG-SNSNLYYSFDVAGAHLIMLGS 253 (333)
Q Consensus 198 ~~~~~GNHD~~~~~~~~~~~~~~~------------------~~~~~-----p~~~~~-~~~~~~ys~~~g~v~fi~lds 253 (333)
+.++||||+..... .+..+. ..|.. .....+ ..-..|..++.+++++-++.-
T Consensus 79 -a~t~GNHefd~G~~---~l~~~~~~~~~~~~~~~~~~~~~~a~fp~l~aNv~~~~~~~~~~~py~i~~~~G~kIgviGl 154 (288)
T cd07412 79 -ASAVGNHEFDEGYA---ELLRRINGGCHPTTGCQAGYPFPGANFPYLAANVYDKGTGTPALPPYTIKDVGGVKVGFIGA 154 (288)
T ss_pred -eeeecccccccCHH---HHHHHHhccCCccccccccccCcCCCCCEEEEeEEecCCCCcccCCEEEEEECCEEEEEEee
Confidence 46889999953221 111110 11111 000000 112345567888855544443
Q ss_pred cCCC-----C-------CCHHHHHHHHHHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHh--CCCcE
Q 019979 254 YADY-----D-------EYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYA--ASVDL 319 (333)
Q Consensus 254 ~~~~-----~-------~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~--~~v~l 319 (333)
.... . ...+-.+-+++.+++.+.++...+|+++|.............. ......+++.+ .++|+
T Consensus 155 ~~~~~~~~~~~~~~~g~~f~d~~e~~~~~v~~lr~~~~D~IIvL~H~G~~~~~~~~~~~~--~~~~~~~l~~~~~~~iD~ 232 (288)
T cd07412 155 VTKDTPNLVSPDGVAGLEFTDEVEAINAVAPELKAGGVDAIVVLAHEGGSTKGGDDTCSA--ASGPIADIVNRLDPDVDV 232 (288)
T ss_pred cCCCccceeccccccCceEcCHHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCCCccccc--cChhHHHHHhhcCCCCCE
Confidence 1110 0 0122234455544444333677899999987643222111000 11122334444 38999
Q ss_pred EEecCccccc
Q 019979 320 VLAGHVHAYE 329 (333)
Q Consensus 320 vl~GH~H~y~ 329 (333)
+|+||.|...
T Consensus 233 IlgGHsH~~~ 242 (288)
T cd07412 233 VFAGHTHQAY 242 (288)
T ss_pred EEeCccCccc
Confidence 9999999864
No 60
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=98.71 E-value=2.7e-07 Score=74.45 Aligned_cols=147 Identities=20% Similarity=0.291 Sum_probs=77.2
Q ss_pred CCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCCCCCccccccccccccccCcCCCCCCCCceEEE
Q 019979 162 KYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSF 241 (333)
Q Consensus 162 ~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~ 241 (333)
.-|.|++.||++.+-..++. ..=++.+..|- -.-+.+.||||+.-... +...+. +|.. . --..-.|
T Consensus 43 ~eDiVllpGDiSWaM~l~ea-~~Dl~~i~~LP--G~K~m~rGNHDYWw~s~-----skl~n~--lp~~-l---~~~n~~f 108 (230)
T COG1768 43 PEDIVLLPGDISWAMRLEEA-EEDLRFIGDLP--GTKYMIRGNHDYWWSSI-----SKLNNA--LPPI-L---FYLNNGF 108 (230)
T ss_pred hhhEEEecccchhheechhh-hhhhhhhhcCC--CcEEEEecCCccccchH-----HHHHhh--cCch-H---hhhccce
Confidence 34899999999865443221 12233444443 23466999999953211 111111 1210 0 0001124
Q ss_pred EeCCEEEEEEecc----CCCCCCHHH--H------HHHHH-HhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHH
Q 019979 242 DVAGAHLIMLGSY----ADYDEYSDQ--Y------RWLKD-DLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIM 308 (333)
Q Consensus 242 ~~g~v~fi~lds~----~~~~~~~~q--~------~WL~~-~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l 308 (333)
.++++.++..-.. .++....+| . .-|+. ..++.++ ...-.|||.|.|+++..... ..+
T Consensus 109 ~l~n~aI~G~RgW~s~~~~~e~~te~Deki~~RE~~RLrlsa~a~l~k-~~~~fivM~HYPP~s~~~t~--------~~~ 179 (230)
T COG1768 109 ELLNYAIVGVRGWDSPSFDSEPLTEQDEKIFLREIGRLRLSADAALPK-GVSKFIVMTHYPPFSDDGTP--------GPF 179 (230)
T ss_pred eEeeEEEEEeecccCCCCCcCccchhHHHHHHHHHHHHHHHHHHhccc-CcCeEEEEEecCCCCCCCCC--------cch
Confidence 5555444443221 112112222 1 22333 2223332 44458999999998754321 356
Q ss_pred HHHHHhCCCcEEEecCccccccc
Q 019979 309 EPLLYAASVDLVLAGHVHAYERS 331 (333)
Q Consensus 309 ~~l~~~~~v~lvl~GH~H~y~R~ 331 (333)
.+++++++|+.++.||.|--.|-
T Consensus 180 sevlee~rv~~~lyGHlHgv~~p 202 (230)
T COG1768 180 SEVLEEGRVSKCLYGHLHGVPRP 202 (230)
T ss_pred HHHHhhcceeeEEeeeccCCCCC
Confidence 77888999999999999987764
No 61
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.71 E-value=1.6e-07 Score=83.32 Aligned_cols=181 Identities=17% Similarity=0.186 Sum_probs=88.1
Q ss_pred eeEEEEeecCCCCC--------h---hhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcC-CceEEccCC
Q 019979 137 ITFAVAGDLGQTGW--------T---KSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASA-RPWMVTQGN 204 (333)
Q Consensus 137 ~~f~~~gD~~~~~~--------~---~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~-~P~~~~~GN 204 (333)
++|+.++|+|..-. . ...++++++.+.++++.+||+...... ..+..-...++.+... ..+ .++||
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~-~~~~~g~~~~~~ln~~g~d~-~~~GN 78 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPI-SDLDKGETIIKIMNAVGYDA-VTPGN 78 (257)
T ss_pred CEEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchh-hhhcCCcHHHHHHHhcCCcE-Ecccc
Confidence 47899999985311 1 234455544467899999999864321 1111111222223222 344 57899
Q ss_pred CCCCCCCCccccccccccccccCcC-------CCCC-CCCceEEEEeC-CE--EEEEEeccCC-C-C--C------CHHH
Q 019979 205 HEKESIPLIMDAFQSYNARWKMPFE-------ESGS-NSNLYYSFDVA-GA--HLIMLGSYAD-Y-D--E------YSDQ 263 (333)
Q Consensus 205 HD~~~~~~~~~~~~~~~~~~~~p~~-------~~~~-~~~~~ys~~~g-~v--~fi~lds~~~-~-~--~------~~~q 263 (333)
||+.... +.+..+.+....|.- ..+. .-..|..++.+ ++ -|+.+-+... . . . ..+-
T Consensus 79 Hefd~G~---~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~~~d~ 155 (257)
T cd07408 79 HEFDYGL---DRLKELSKEADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLTTPETATKTHPKNVKDVTFEDP 155 (257)
T ss_pred ccccCCH---HHHHHHHhhCCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeecCcCcccccCccccCCcEEecH
Confidence 9995322 122222222222211 0010 11235556777 64 4555544210 0 0 0 0112
Q ss_pred HHHHHHH-hhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCcccccc
Q 019979 264 YRWLKDD-LSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYER 330 (333)
Q Consensus 264 ~~WL~~~-L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~R 330 (333)
.+-+++. ..+.++.++..+|++.|.+....... . ....+.. +-.++|++|.||.|....
T Consensus 156 ~~~~~~~~v~~l~~~~~D~iIvl~H~G~~~~~~~----~--~~~~la~--~~~giDvIigGH~H~~~~ 215 (257)
T cd07408 156 IEEAKKVIVAALKAKGADVIVALGHLGVDRTSSP----W--TSTELAA--NVTGIDLIIDGHSHTTIE 215 (257)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEeCcCcCCCCCC----c--cHHHHHH--hCCCceEEEeCCCccccc
Confidence 2223333 22222236778999999886543111 0 1122222 124899999999998653
No 62
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.66 E-value=2.4e-07 Score=82.52 Aligned_cols=156 Identities=19% Similarity=0.127 Sum_probs=78.3
Q ss_pred hHHHHhhcC-CCCeE-EccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCCCCCccccccccccccccCc--
Q 019979 153 STLDHIGQC-KYDVH-LLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPF-- 228 (333)
Q Consensus 153 ~~~~~i~~~-~~d~v-l~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~p~-- 228 (333)
..++++++. ++|.+ +.+||+...... ..+......++.+. ..++.++.||||+..... .+....+....|.
T Consensus 40 ~~v~~~~~~~~~~~l~l~~GD~~~gs~~-~~~~~g~~~~~~l~-~~g~da~~GNHefd~g~~---~l~~~~~~~~~~~l~ 114 (264)
T cd07411 40 TLIKRIRAERNPNTLLLDGGDTWQGSGE-ALYTRGQAMVDALN-ALGVDAMVGHWEFTYGPE---RVRELFGRLNWPFLA 114 (264)
T ss_pred HHHHHHHHhcCCCeEEEeCCCccCCChH-HhhcCChhHHHHHH-hhCCeEEecccccccCHH---HHHHHHhhCCCCEEE
Confidence 455666666 88877 579999965432 12221122222222 255555559999964321 2222222222221
Q ss_pred -C----C-CCCCCCceEEEEeCCEE--EEEEeccCCCC--C--------CHHHHHHHHHHhhccc-CCCCCeEEEEeccc
Q 019979 229 -E----E-SGSNSNLYYSFDVAGAH--LIMLGSYADYD--E--------YSDQYRWLKDDLSKVD-RKKTPWLLVLLHVP 289 (333)
Q Consensus 229 -~----~-~~~~~~~~ys~~~g~v~--fi~lds~~~~~--~--------~~~q~~WL~~~L~~~~-~~~~~~~iv~~H~P 289 (333)
| . .......|..++.++++ ||.+.+..... . .....+.+++.+++.. +.+...+|++.|-+
T Consensus 115 aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iI~l~H~g 194 (264)
T cd07411 115 ANVYDDEAGERVFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGIREEELQEVVVKLRREEGVDVVVLLSHNG 194 (264)
T ss_pred EEEEeCCCCCcccCCEEEEEECCEEEEEEEeccCCcccccCcCCCCCcEECCHHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 0 0 00112345667888855 55554321100 0 0223344444433321 23567899999987
Q ss_pred cccCCCCCCCCChhHHHHHHHHHHh-CCCcEEEecCcccc
Q 019979 290 WYNSNEAHQGEGDGMMAIMEPLLYA-ASVDLVLAGHVHAY 328 (333)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvl~GH~H~y 328 (333)
... + . .+.++ .+||++|+||.|..
T Consensus 195 ~~~---------~---~---~la~~~~~iDlilgGH~H~~ 219 (264)
T cd07411 195 LPV---------D---V---ELAERVPGIDVILSGHTHER 219 (264)
T ss_pred chh---------h---H---HHHhcCCCCcEEEeCccccc
Confidence 421 0 1 22233 47999999999964
No 63
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.61 E-value=5.2e-07 Score=81.06 Aligned_cols=156 Identities=15% Similarity=0.182 Sum_probs=80.1
Q ss_pred hHHHHhhcCCCC-eEEccccccccccchh--hHHHHHHhhhhhhcCCceEEccCCCCCCCCCCccccccccccccccCcC
Q 019979 153 STLDHIGQCKYD-VHLLPGDLSYADYMQH--RWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFE 229 (333)
Q Consensus 153 ~~~~~i~~~~~d-~vl~~GDl~~~~~~~~--~~~~~~~~~~~l~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~p~~ 229 (333)
..++++++.+++ +++.+||+........ ..+...+.+..+. .. +.++||||+..... .+..+.+....|.-
T Consensus 39 ~~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~~g--~D-~~~lGNHefd~G~~---~l~~~~~~~~~p~l 112 (281)
T cd07409 39 TLVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMNLLG--YD-AMTLGNHEFDDGVE---GLAPFLNNLKFPVL 112 (281)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHHhcC--CC-EEEeccccccCCHH---HHHHHHHhCCCCEE
Confidence 355566556677 5666999986433211 1122223333322 34 45679999964321 22222222222210
Q ss_pred ------CC-----CCCCCceEEEEeCCEEEE--EEeccCC--CC---C---CHHHHHHHHHHhhcccCCCCCeEEEEecc
Q 019979 230 ------ES-----GSNSNLYYSFDVAGAHLI--MLGSYAD--YD---E---YSDQYRWLKDDLSKVDRKKTPWLLVLLHV 288 (333)
Q Consensus 230 ------~~-----~~~~~~~ys~~~g~v~fi--~lds~~~--~~---~---~~~q~~WL~~~L~~~~~~~~~~~iv~~H~ 288 (333)
.. ...-..|..++.+++++- .+-+... .. . ..+..+.+++.+++.+.++...+|++.|-
T Consensus 113 ~aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~~~~D~II~l~H~ 192 (281)
T cd07409 113 SANIDTSNEPPLLDGLLKPSTILTVGGEKIGIIGYTTPDTTELSSPGGKVKFLDEIEAAQKEADKLKAQGVNKIIALSHS 192 (281)
T ss_pred EEeeecCCCccccccccCCeEEEEECCEEEEEEEEecCcccccccCCCceEECCHHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 00 011134566788885544 4433211 00 0 12334556666666544457789999998
Q ss_pred ccccCCCCCCCCChhHHHHHHHHHHh-CCCcEEEecCccccc
Q 019979 289 PWYNSNEAHQGEGDGMMAIMEPLLYA-ASVDLVLAGHVHAYE 329 (333)
Q Consensus 289 P~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvl~GH~H~y~ 329 (333)
+... .. ++.++ .++|++++||.|...
T Consensus 193 G~~~------------d~---~la~~~~giD~IiggH~H~~~ 219 (281)
T cd07409 193 GYEV------------DK---EIARKVPGVDVIVGGHSHTFL 219 (281)
T ss_pred Cchh------------HH---HHHHcCCCCcEEEeCCcCccc
Confidence 6421 11 23333 489999999999863
No 64
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.55 E-value=1.8e-07 Score=82.72 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=51.2
Q ss_pred eeEEEEeecCCCCCh-------------hhHHHHhhcCCCCeEEccccccccccch-hhHHHHHHhhhhhhc-C-CceEE
Q 019979 137 ITFAVAGDLGQTGWT-------------KSTLDHIGQCKYDVHLLPGDLSYADYMQ-HRWDTFGELVQPLAS-A-RPWMV 200 (333)
Q Consensus 137 ~~f~~~gD~~~~~~~-------------~~~~~~i~~~~~d~vl~~GDl~~~~~~~-~~~~~~~~~~~~l~~-~-~P~~~ 200 (333)
+||++++|+|.+... ..+++.+.+.++|+||++||+.+..... .....+.+.++.+.. . +|+++
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~ 80 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVV 80 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence 589999999986421 2344455678999999999999865432 223345556666644 3 89999
Q ss_pred ccCCCCCC
Q 019979 201 TQGNHEKE 208 (333)
Q Consensus 201 ~~GNHD~~ 208 (333)
++||||..
T Consensus 81 i~GNHD~~ 88 (253)
T TIGR00619 81 ISGNHDSA 88 (253)
T ss_pred EccCCCCh
Confidence 99999984
No 65
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=98.50 E-value=1.8e-07 Score=80.21 Aligned_cols=69 Identities=19% Similarity=0.008 Sum_probs=42.0
Q ss_pred EEEeecCCCCC-hhhHHHHhh--------cCCCCeEEccccccccccch-hhHHHHHHhhhhh-hcCCceEEccCCCCCC
Q 019979 140 AVAGDLGQTGW-TKSTLDHIG--------QCKYDVHLLPGDLSYADYMQ-HRWDTFGELVQPL-ASARPWMVTQGNHEKE 208 (333)
Q Consensus 140 ~~~gD~~~~~~-~~~~~~~i~--------~~~~d~vl~~GDl~~~~~~~-~~~~~~~~~~~~l-~~~~P~~~~~GNHD~~ 208 (333)
+++||+|.... ..++++.+. ..+.|.++++||+++.+... ...+.+.+..... ....+++.+.||||..
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 47999986632 234454443 24689999999999866532 2222222221111 1236799999999984
No 66
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=98.49 E-value=8.2e-07 Score=81.72 Aligned_cols=113 Identities=18% Similarity=0.137 Sum_probs=73.2
Q ss_pred CCCeeEEEEeecCCCCCh------------------hhHHHHh-hcCCCCeEEccccccccccc--hhhHHHHHHhhhhh
Q 019979 134 QFPITFAVAGDLGQTGWT------------------KSTLDHI-GQCKYDVHLLPGDLSYADYM--QHRWDTFGELVQPL 192 (333)
Q Consensus 134 ~~~~~f~~~gD~~~~~~~------------------~~~~~~i-~~~~~d~vl~~GDl~~~~~~--~~~~~~~~~~~~~l 192 (333)
+..+|+++++|.|.-+.. +.....+ ...+||.++++||+.+.+.. .++|.+..+-+..+
T Consensus 46 ~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkI 125 (410)
T KOG3662|consen 46 ENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKI 125 (410)
T ss_pred CCceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHh
Confidence 688999999999865410 1122222 26799999999999986543 56665544334444
Q ss_pred h---cCCceEEccCCCCCCCCCCccccccccccccccCcCCCCCCCCceEEEEeCCEEEEEEeccC
Q 019979 193 A---SARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYA 255 (333)
Q Consensus 193 ~---~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~ 255 (333)
. ..+|++.++||||.+.... .......+|.-- .++..-.|+.|+..|+++|++.
T Consensus 126 f~~k~~~~~~~i~GNhDIGf~~~---~~~~~i~Rfe~~------fg~~~r~f~v~~~tf~~~d~~~ 182 (410)
T KOG3662|consen 126 FGRKGNIKVIYIAGNHDIGFGNE---LIPEWIDRFESV------FGPTERRFDVGNLTFVMFDSNA 182 (410)
T ss_pred hCCCCCCeeEEeCCccccccccc---cchhHHHHHHHh------hcchhhhhccCCceeEEeeehh
Confidence 3 2599999999999974332 112222333211 1235567899999999999864
No 67
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=98.45 E-value=4e-06 Score=75.45 Aligned_cols=184 Identities=21% Similarity=0.257 Sum_probs=86.7
Q ss_pred eeEEEEeecCCCCC-----------hhhHHHHhhc-----CCCCeEEccccccccccchhhHH---HHHHhhhhhhcCCc
Q 019979 137 ITFAVAGDLGQTGW-----------TKSTLDHIGQ-----CKYDVHLLPGDLSYADYMQHRWD---TFGELVQPLASARP 197 (333)
Q Consensus 137 ~~f~~~gD~~~~~~-----------~~~~~~~i~~-----~~~d~vl~~GDl~~~~~~~~~~~---~~~~~~~~l~~~~P 197 (333)
++|+..+|+|..-. ....++++++ ...-+++.+||+..... ...+. ...+.+..+. .-
T Consensus 1 ltIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~-~~~~~~g~~~~~~~n~~g--~D 77 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVP-ESDLQDAEPDFRGMNLVG--YD 77 (285)
T ss_pred CEEEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCch-hHHhcCcchHHHHHHhhC--Cc
Confidence 47889999986411 1234555543 23458999999984322 11111 1122333322 33
Q ss_pred eEEccCCCCCCCCCCccccccccccccccCc---C---CCC-CCCCceEEEEeCCEEEEEEeccCC---C--C----CC-
Q 019979 198 WMVTQGNHEKESIPLIMDAFQSYNARWKMPF---E---ESG-SNSNLYYSFDVAGAHLIMLGSYAD---Y--D----EY- 260 (333)
Q Consensus 198 ~~~~~GNHD~~~~~~~~~~~~~~~~~~~~p~---~---~~~-~~~~~~ys~~~g~v~fi~lds~~~---~--~----~~- 260 (333)
..++||||+..... .+....+....|. | ..+ .....|..++.+++++-++.-... . . .+
T Consensus 78 -a~~~GNHEfD~G~~---~L~~~~~~~~fp~l~aNv~~~~g~~~~~p~~i~~~~G~kIgviG~t~~~~~~~~~~~~~~~~ 153 (285)
T cd07405 78 -AMAVGNHEFDNPLE---VLRQQMKWANFPLLSANIYQESGERLFKPYALFDLGGLKIAVIGLTTDDTAKIGNPAYFEGI 153 (285)
T ss_pred -EEeecccccccCHH---HHHHHHhhCCCCEEEEEEEecCCCCccCCeEEEEECCEEEEEEEecccccccccCcCCcCCc
Confidence 34779999964322 1111111111111 0 001 112356667888866544432111 0 0 00
Q ss_pred --HHHHHHHHHHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCccccc
Q 019979 261 --SDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (333)
Q Consensus 261 --~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~ 329 (333)
.+..+=+++.+++.+.++...+|+++|-....... .+........+.+.+...++|++|.||.|...
T Consensus 154 ~f~d~~~~~~~~v~~lk~~~~D~VI~lsH~G~~~~~~--~~~~~~~~~~lA~~~~~~giD~IigGHsH~~~ 222 (285)
T cd07405 154 EFRPPIHEAKEVVPELKQEKPDIVIAATHMGHYDNGE--HGSNAPGDVEMARALPAGGLDLIVGGHSQDPV 222 (285)
T ss_pred EEcCHHHHHHHHHHHHHHcCCCEEEEEecccccCCcc--ccccCchHHHHHHhcCCCCCCEEEeCCCCccc
Confidence 11111122222222213567799999988643221 11111111233333333589999999999864
No 68
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.45 E-value=4.3e-06 Score=89.01 Aligned_cols=184 Identities=16% Similarity=0.170 Sum_probs=94.3
Q ss_pred CCeeEEEEeecCCCCC----hhhHHHHhhcCCCCeEEc-cccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCC
Q 019979 135 FPITFAVAGDLGQTGW----TKSTLDHIGQCKYDVHLL-PGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKES 209 (333)
Q Consensus 135 ~~~~f~~~gD~~~~~~----~~~~~~~i~~~~~d~vl~-~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~ 209 (333)
..++|+.++|+|..-. ....++++++.+|+.+++ +||++..... ..+......++.+...-.-+.++||||+..
T Consensus 659 ~~l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~-~~~~~g~~~~~~ln~lg~d~~~~GNHEfd~ 737 (1163)
T PRK09419 659 WELTILHTNDFHGHLDGAAKRVTKIKEVKEENPNTILVDAGDVYQGSLY-SNLLKGLPVLKMMKEMGYDASTFGNHEFDW 737 (1163)
T ss_pred eEEEEEEEeecccCCCCHHHHHHHHHHHHhhCCCeEEEecCCCCCCcch-hhhcCChHHHHHHhCcCCCEEEeccccccc
Confidence 4599999999995421 234566677778888766 9999864321 111111122222222223356999999954
Q ss_pred CCCccccccccccc--------------cccC-cC----CCCC---CCCceEEEEeCCEE--EEEEeccCC--C---C--
Q 019979 210 IPLIMDAFQSYNAR--------------WKMP-FE----ESGS---NSNLYYSFDVAGAH--LIMLGSYAD--Y---D-- 258 (333)
Q Consensus 210 ~~~~~~~~~~~~~~--------------~~~p-~~----~~~~---~~~~~ys~~~g~v~--fi~lds~~~--~---~-- 258 (333)
... .+..+.+. |..- .| ..+. .-..|..++.++++ ||.+-+... . .
T Consensus 738 g~~---~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~G~kIgiiGltt~~~~~~~~p~~~ 814 (1163)
T PRK09419 738 GPD---VLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVNGKKVGFIGLTTPETAYKTSPGNV 814 (1163)
T ss_pred ChH---HHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEECCEEEEEEEecccccccccCCCCc
Confidence 321 11111100 1100 00 0010 11356667888855 455443210 0 0
Q ss_pred C---CHHHHHHHHHHhhccc-CCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhC-CCcEEEecCccccc
Q 019979 259 E---YSDQYRWLKDDLSKVD-RKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAA-SVDLVLAGHVHAYE 329 (333)
Q Consensus 259 ~---~~~q~~WL~~~L~~~~-~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~v~lvl~GH~H~y~ 329 (333)
. -.+..+.+++..++.+ .++...+|+++|......... ++ ....++.++. +||++|.||.|..-
T Consensus 815 ~~l~f~d~~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~d~~~--~~-----~~~~~lA~~v~gIDvIigGHsH~~~ 883 (1163)
T PRK09419 815 KNLEFKDPAEAAKKWVKELKEKEKVDAIIALTHLGSNQDRTT--GE-----ITGLELAKKVKGVDAIISAHTHTLV 883 (1163)
T ss_pred CCcEEcCHHHHHHHHHHHHHhhcCCCEEEEEecCCccccccc--cc-----cHHHHHHHhCCCCCEEEeCCCCccc
Confidence 0 1122333444444433 136778999999886432111 11 1233444544 79999999999753
No 69
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=98.44 E-value=5.3e-07 Score=84.94 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=49.7
Q ss_pred eeEEEEeecCCCCCh-------------hhHHHHhhcCCCCeEEccccccccccchhh-HHHHHHhhhhhhc-CCceEEc
Q 019979 137 ITFAVAGDLGQTGWT-------------KSTLDHIGQCKYDVHLLPGDLSYADYMQHR-WDTFGELVQPLAS-ARPWMVT 201 (333)
Q Consensus 137 ~~f~~~gD~~~~~~~-------------~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~-~~~~~~~~~~l~~-~~P~~~~ 201 (333)
+||++++|+|.+... ..+++.+.+.+||+||++||+.+....... ...+.+++..+.. .+|++++
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~v~~I 80 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQLVVL 80 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 589999999986321 134455568899999999999976443221 1233445555543 4899999
Q ss_pred cCCCCCC
Q 019979 202 QGNHEKE 208 (333)
Q Consensus 202 ~GNHD~~ 208 (333)
+||||..
T Consensus 81 ~GNHD~~ 87 (407)
T PRK10966 81 AGNHDSV 87 (407)
T ss_pred cCCCCCh
Confidence 9999984
No 70
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.40 E-value=1.4e-05 Score=70.41 Aligned_cols=168 Identities=14% Similarity=0.149 Sum_probs=88.6
Q ss_pred eEEEEeecCCCCCh---hhHHHHhh-cCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCCCCCc
Q 019979 138 TFAVAGDLGQTGWT---KSTLDHIG-QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLI 213 (333)
Q Consensus 138 ~f~~~gD~~~~~~~---~~~~~~i~-~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~~~~~ 213 (333)
|++++||.=..... ...++.++ +.++||+|..||.+-.+.... ....+.+..+. +-++ +.|||++....
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~--~~~~~~L~~~G--~D~i-TlGNH~fD~ge-- 73 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGIT--PKIAKELLSAG--VDVI-TMGNHTWDKKE-- 73 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCCEEEECCccccCCCCCC--HHHHHHHHhcC--CCEE-EecccccCcch--
Confidence 58899998322211 23444444 567999999999986432111 12222333322 4444 56999996431
Q ss_pred ccccccccccc---ccCcCC-CCCCCCceEEEEeCCEEEEEEeccCCCC--CCHHHHHHHHHHhhcccCCCCCeEEEEec
Q 019979 214 MDAFQSYNARW---KMPFEE-SGSNSNLYYSFDVAGAHLIMLGSYADYD--EYSDQYRWLKDDLSKVDRKKTPWLLVLLH 287 (333)
Q Consensus 214 ~~~~~~~~~~~---~~p~~~-~~~~~~~~ys~~~g~v~fi~lds~~~~~--~~~~q~~WL~~~L~~~~~~~~~~~iv~~H 287 (333)
...+.+.. -.|.+- ....+..|..++.+++++-+++-..... ....-++-+++.+++.+. +.+.+||.+|
T Consensus 74 ---l~~~l~~~~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~g~~~~~~~~~P~~~~~~~v~~lk~-~~D~IIV~~H 149 (255)
T cd07382 74 ---ILDFIDEEPRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLMGRVFMPPLDNPFRAADELLEELKE-EADIIFVDFH 149 (255)
T ss_pred ---HHHHHhcCcCceEeeecCCCCCCCCeEEEEECCEEEEEEEEecccCCCcCCCHHHHHHHHHHHHhc-CCCEEEEEEC
Confidence 11121111 111111 1112345778888887766665431111 112223345556655543 5677999999
Q ss_pred cccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCcccc
Q 019979 288 VPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAY 328 (333)
Q Consensus 288 ~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y 328 (333)
.-.. .....+.. .-.-+||+++.||+|..
T Consensus 150 ~g~t-----------sEk~ala~-~ldg~VdvIvGtHTHv~ 178 (255)
T cd07382 150 AEAT-----------SEKIALGW-YLDGRVSAVVGTHTHVQ 178 (255)
T ss_pred CCCC-----------HHHHHHHH-hCCCCceEEEeCCCCcc
Confidence 7431 01122332 11336999999999974
No 71
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=98.40 E-value=9.9e-07 Score=71.19 Aligned_cols=114 Identities=17% Similarity=0.124 Sum_probs=72.6
Q ss_pred EEEeecCCCCChhhHHHHhh-----cCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCCCCCcc
Q 019979 140 AVAGDLGQTGWTKSTLDHIG-----QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIM 214 (333)
Q Consensus 140 ~~~gD~~~~~~~~~~~~~i~-----~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~~~~~~ 214 (333)
+++||.+.. ..++++.++ +.+.|++|++||+.........|..+.. ......+|.|++-|||+
T Consensus 1 LV~G~~~G~--l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~~~~~~y~~--g~~~~pipTyf~ggn~~-------- 68 (150)
T cd07380 1 LVCGDVNGR--LKALFEKVNTINKKKGPFDALLCVGDFFGDDEDDEELEAYKD--GSKKVPIPTYFLGGNNP-------- 68 (150)
T ss_pred CeeecCCcc--HHHHHHHHHHHhcccCCeeEEEEecCccCCccchhhHHHHhc--CCccCCCCEEEECCCCC--------
Confidence 467888643 344444442 5678999999999854443323333322 12233489999999996
Q ss_pred ccccccccccccCcCCCCCCCCceEEEEeCCEEEEEEeccCCCCCCHHHHHHHHHHhhcccCCCCCeEEEEeccccccCC
Q 019979 215 DAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSN 294 (333)
Q Consensus 215 ~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~ 294 (333)
+.-|+++|.|++...
T Consensus 69 -----------------------------------------------------------------~~DILlTh~wP~gi~ 83 (150)
T cd07380 69 -----------------------------------------------------------------GVDILLTSEWPKGIS 83 (150)
T ss_pred -----------------------------------------------------------------CCCEEECCCCchhhh
Confidence 125888888876542
Q ss_pred CCCC-----CCChhHHHHHHHHHHhCCCcEEEecCcc-cccc
Q 019979 295 EAHQ-----GEGDGMMAIMEPLLYAASVDLVLAGHVH-AYER 330 (333)
Q Consensus 295 ~~~~-----~~~~~~~~~l~~l~~~~~v~lvl~GH~H-~y~R 330 (333)
.... .........+.+++++.++.+.||||.| .|||
T Consensus 84 ~~~~~~~~~~~~~~GS~~i~~l~~~lkPrYhf~gh~~~fyer 125 (150)
T cd07380 84 KLSKVPFEETLLICGSDLIAELAKKLKPRYHFAGLEGVFYER 125 (150)
T ss_pred hhCCCcccccccCCCCHHHHHHHHHcCCCeEeecCCCceEee
Confidence 1110 0011234677888999999999999999 6777
No 72
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.37 E-value=5e-07 Score=76.96 Aligned_cols=68 Identities=18% Similarity=0.084 Sum_probs=43.3
Q ss_pred EEeecCCCCChh----hHHHHhhcC--CCCeEEccccccccccchhhHHHH----HHhhhhhhcC-CceEEccCCCCCC
Q 019979 141 VAGDLGQTGWTK----STLDHIGQC--KYDVHLLPGDLSYADYMQHRWDTF----GELVQPLASA-RPWMVTQGNHEKE 208 (333)
Q Consensus 141 ~~gD~~~~~~~~----~~~~~i~~~--~~d~vl~~GDl~~~~~~~~~~~~~----~~~~~~l~~~-~P~~~~~GNHD~~ 208 (333)
+|||+|.+.... -.++-+... +.|.+.++||+++.=-....|... ...+..+.++ +|+|+++||||+-
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a~~G~~v~~i~GN~Dfl 80 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEAAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLARKGTRVYYIHGNHDFL 80 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhccccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHhcCCeEEEecCchHHH
Confidence 689999884432 233444433 559999999998632222344433 2334444444 9999999999973
No 73
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.34 E-value=2.4e-05 Score=70.10 Aligned_cols=180 Identities=18% Similarity=0.226 Sum_probs=88.2
Q ss_pred CCeeEEEEeecCCCCC--------------hhhHHHHhh----cCCCC-eEEccccccccccch--h--hHHHHHHhhhh
Q 019979 135 FPITFAVAGDLGQTGW--------------TKSTLDHIG----QCKYD-VHLLPGDLSYADYMQ--H--RWDTFGELVQP 191 (333)
Q Consensus 135 ~~~~f~~~gD~~~~~~--------------~~~~~~~i~----~~~~d-~vl~~GDl~~~~~~~--~--~~~~~~~~~~~ 191 (333)
.+++|+..+|+|..-. ..++++.++ +.+++ +++.+||........ . .+....+.+..
T Consensus 4 ~~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~~~g~~~~~~mN~ 83 (282)
T cd07407 4 GDINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASPPPGSYSNPIFRM 83 (282)
T ss_pred ceEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeecCCChHHHHHHHh
Confidence 5689999999985311 022333332 33555 677899998643321 1 22222333333
Q ss_pred hhcCCceEEccCCCCCCCCCCccccccccccccccCc---C-----C--CC-CCCCceEEEEeC-CEE--EEEEeccCC-
Q 019979 192 LASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPF---E-----E--SG-SNSNLYYSFDVA-GAH--LIMLGSYAD- 256 (333)
Q Consensus 192 l~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~p~---~-----~--~~-~~~~~~ys~~~g-~v~--fi~lds~~~- 256 (333)
+. -=..++||||+......-..+..+.+....|. | + .. .....|..++.+ +++ +|.+-+...
T Consensus 84 mg---yDa~tlGNHEFd~g~~~l~~l~~~~~~~~fp~l~aNi~~~~~~~~~~~~~~~y~i~~~~~G~kIgiiGltt~~~~ 160 (282)
T cd07407 84 MP---YDLLTIGNHELYNYEVADDEYEGFVPSWGDRYLTSNVDITDDSGLLVPIGSRYRKFTTKHGLRVLAFGFLFDFKG 160 (282)
T ss_pred cC---CcEEeecccccCccccHHHHHHHHHhhcCCCEEEEEEEEeCCCCcccccccceEEEEcCCCcEEEEEEEeccccc
Confidence 22 22458999999533210011111111111111 0 0 00 112345666776 655 555543211
Q ss_pred ------CCCCHHHH--HHHHHHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhC-CCc-EEEecCcc
Q 019979 257 ------YDEYSDQY--RWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAA-SVD-LVLAGHVH 326 (333)
Q Consensus 257 ------~~~~~~q~--~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~v~-lvl~GH~H 326 (333)
+....+.. +|+.+.|++ ++...+|+++|....... . ..+....+.++. ++| ++|.||.|
T Consensus 161 ~~~~~~f~d~~~~~~~~~v~~~l~~---~~~DvIIvlsH~G~~~d~-----~---~~~~~~~la~~~~~id~~Ii~GHsH 229 (282)
T cd07407 161 AANGVTVQPVADVVQEPWFQDAINN---EDVDLILVLGHMPVRDDA-----E---FKVLHDAIRKIFPDTPIQFLGGHSH 229 (282)
T ss_pred CCCCcEEcCHHHHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCc-----c---HHHHHHHHHHhCCCCCEEEEeCCcc
Confidence 01111222 487777764 256779999998864321 0 111122333444 577 79999999
Q ss_pred cc
Q 019979 327 AY 328 (333)
Q Consensus 327 ~y 328 (333)
..
T Consensus 230 ~~ 231 (282)
T cd07407 230 VR 231 (282)
T ss_pred cc
Confidence 63
No 74
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.32 E-value=6e-06 Score=68.13 Aligned_cols=63 Identities=19% Similarity=0.153 Sum_probs=44.2
Q ss_pred eeEEEEeecCCCCC-hhhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCC
Q 019979 137 ITFAVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKE 208 (333)
Q Consensus 137 ~~f~~~gD~~~~~~-~~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~ 208 (333)
.+++++||+|.... .....+.....++|+|||+||.+..... ..+ ... + ..++++|.||.|..
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~~~~d~vih~GD~~~~~~~-~~l---~~~---~--~~~i~~V~GN~D~~ 65 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNLEKVDAVIHAGDSTSPFTL-DAL---EGG---L--AAKLIAVRGNCDGE 65 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhhcCCCEEEECCCcCCccch-HHh---hcc---c--ccceEEEEccCCCc
Confidence 58999999998763 2344455567899999999999864331 111 110 1 37899999999994
No 75
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=98.30 E-value=5.8e-05 Score=66.69 Aligned_cols=170 Identities=13% Similarity=0.147 Sum_probs=93.0
Q ss_pred eeEEEEeecCCCCChh----hHHHHhh-cCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCCCC
Q 019979 137 ITFAVAGDLGQTGWTK----STLDHIG-QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIP 211 (333)
Q Consensus 137 ~~f~~~gD~~~~~~~~----~~~~~i~-~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~~~ 211 (333)
.|++++||.= +...+ ..+..++ +.++||+|..||.+-.+-. -. ....+.+... .+-++.+ |||++....
T Consensus 1 m~ilfiGDi~-G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~G-i~-~~~~~~L~~~--GvDviT~-GNH~~Dkge 74 (266)
T TIGR00282 1 IKFLFIGDVY-GKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKG-LT-LKIYEFLKQS--GVNYITM-GNHTWFQKL 74 (266)
T ss_pred CeEEEEEecC-CHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCC-CC-HHHHHHHHhc--CCCEEEc-cchhccCcH
Confidence 4799999983 32223 3444444 5678999999999854311 11 1112222222 2566655 999996432
Q ss_pred Cc--cccccccccccccCcCCCCCCCCceEEEEeCCEEEEEEeccC-CCC-C--CHHHHHHHHHHhhcccCCCCCeEEEE
Q 019979 212 LI--MDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYA-DYD-E--YSDQYRWLKDDLSKVDRKKTPWLLVL 285 (333)
Q Consensus 212 ~~--~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~-~~~-~--~~~q~~WL~~~L~~~~~~~~~~~iv~ 285 (333)
.. -+.........+.|. +..+..+..++.++.++-+++-.. .+. . ...-++-+++.+++.+. +++.+||.
T Consensus 75 ~~~~i~~~~~~lrpanyp~---~~pG~g~~i~~~nG~kiaVinl~G~~fm~~~~~~~Pf~~~d~~i~~lk~-~~d~IIVd 150 (266)
T TIGR00282 75 ILDVVINQKDLVRPLNFDT---SFAGKGSLVFEFNGAKIAVTNLQGTSVNLPFKTTNPFKVLKELINMLKK-DCDLIFVD 150 (266)
T ss_pred HHHHHhccccccccCCCCC---CCCCCCcEEEEECCEEEEEEECCCcccCCccccCCHHHHHHHHHHhhhc-CCCEEEEE
Confidence 10 000111111112222 122355677788887777766521 111 1 11122334555555433 46689999
Q ss_pred eccccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCcccc
Q 019979 286 LHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAY 328 (333)
Q Consensus 286 ~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y 328 (333)
+|.-.- ..+.....+-+.+|++|+.-|.|.-
T Consensus 151 ~Haeat------------sEK~a~~~~ldg~vsaVvGtHtHV~ 181 (266)
T TIGR00282 151 FHAETT------------SEKNAFGMAFDGYVTAVVGTHTHVP 181 (266)
T ss_pred eCCCCH------------HHHHHHHHHhCCCccEEEeCCCCCC
Confidence 996421 1245566777889999999999964
No 76
>PRK09453 phosphodiesterase; Provisional
Probab=98.22 E-value=2.6e-06 Score=71.49 Aligned_cols=70 Identities=21% Similarity=0.216 Sum_probs=46.0
Q ss_pred eeEEEEeecCCCCC-hhhHHHHhhcCCCCeEEccccccccccch-----hhHHHHHHhhhhhhcCCceEEccCCCCCC
Q 019979 137 ITFAVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLSYADYMQ-----HRWDTFGELVQPLASARPWMVTQGNHEKE 208 (333)
Q Consensus 137 ~~f~~~gD~~~~~~-~~~~~~~i~~~~~d~vl~~GDl~~~~~~~-----~~~~~~~~~~~~l~~~~P~~~~~GNHD~~ 208 (333)
+|++++||+|.... .+++++.+.+.++|.|+++||+++.+... ...+...+.++.+ ..+++.+.||||..
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~--~~~v~~V~GNhD~~ 76 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAY--ADKIIAVRGNCDSE 76 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhc--CCceEEEccCCcch
Confidence 47999999995532 13455666678999999999998643210 0122233333332 25899999999973
No 77
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=98.21 E-value=3e-05 Score=76.39 Aligned_cols=186 Identities=20% Similarity=0.271 Sum_probs=87.9
Q ss_pred CCCeeEEEEeecCCCCC-------h----hhHHHHhhc-----CCCCeEEccccccccccchhhHH---HHHHhhhhhhc
Q 019979 134 QFPITFAVAGDLGQTGW-------T----KSTLDHIGQ-----CKYDVHLLPGDLSYADYMQHRWD---TFGELVQPLAS 194 (333)
Q Consensus 134 ~~~~~f~~~gD~~~~~~-------~----~~~~~~i~~-----~~~d~vl~~GDl~~~~~~~~~~~---~~~~~~~~l~~ 194 (333)
...++|+.++|+|..-. . ...++++++ ...-++|.+||+..... ...+. ...+.+..+.
T Consensus 32 ~~~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~-~s~~~~g~~~i~~mN~~g- 109 (551)
T PRK09558 32 TYKITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVP-ESDLQDAEPDFRGMNLIG- 109 (551)
T ss_pred ceEEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceE-hhhhcCCchhHHHHhcCC-
Confidence 45789999999986421 1 233444432 23457999999975322 11111 1122222222
Q ss_pred CCceEEccCCCCCCCCCCccccccccccccccCc---C----CCC-CCCCceEEEEeCCEEEEEEe--ccCC--CCC---
Q 019979 195 ARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPF---E----ESG-SNSNLYYSFDVAGAHLIMLG--SYAD--YDE--- 259 (333)
Q Consensus 195 ~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~p~---~----~~~-~~~~~~ys~~~g~v~fi~ld--s~~~--~~~--- 259 (333)
.- ..++||||+..... .+.........|. | ..+ ..-..|..++.+++++-++. +... +..
T Consensus 110 -~D-a~tlGNHEFD~G~~---~L~~~~~~a~fp~l~aNv~~~~~g~~~~~py~i~~~~G~kIgiiG~~t~~~~~~~~~~~ 184 (551)
T PRK09558 110 -YD-AMAVGNHEFDNPLS---VLRKQEKWAKFPFLSANIYQKSTGERLFKPYAIFDRQGLKIAVIGLTTEDTAKIGNPEY 184 (551)
T ss_pred -CC-EEcccccccCcCHH---HHHHhhccCCCCEEEEEEEECCCCCcccCCeEEEEECCEEEEEEEEeccccccccCCCC
Confidence 33 45779999964321 1111111111121 0 001 11245666788886554443 3110 000
Q ss_pred -----CHHHHHHHHHHhhcccC-CCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCcccc
Q 019979 260 -----YSDQYRWLKDDLSKVDR-KKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAY 328 (333)
Q Consensus 260 -----~~~q~~WL~~~L~~~~~-~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y 328 (333)
..+..+-+++..++.+. .+...+|+++|......... .........+.+-+...+||++|.||.|..
T Consensus 185 ~~~~~f~d~~e~a~~~v~~Lk~~~~~D~IV~LsH~G~~~~~~~--~~~~~~d~~la~~~~~~~IDvIlgGHsH~~ 257 (551)
T PRK09558 185 FTDIEFRDPAEEAKKVIPELKQTEKPDVIIALTHMGHYDDGEH--GSNAPGDVEMARSLPAGGLDMIVGGHSQDP 257 (551)
T ss_pred cCCceECCHHHHHHHHHHHHHhccCCCEEEEEeccccccCCcc--CCCCccHHHHHHhCCccCceEEEeCCCCcc
Confidence 01112223333333321 36678999999887432111 110001122222222237999999999974
No 78
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=98.15 E-value=2.5e-05 Score=76.37 Aligned_cols=183 Identities=18% Similarity=0.184 Sum_probs=96.9
Q ss_pred CCCeeEEEEeecCCCCC------------h----hhHHHHhhcC-CCCeEEccccccccccchhh---HHHHHHhhhhhh
Q 019979 134 QFPITFAVAGDLGQTGW------------T----KSTLDHIGQC-KYDVHLLPGDLSYADYMQHR---WDTFGELVQPLA 193 (333)
Q Consensus 134 ~~~~~f~~~gD~~~~~~------------~----~~~~~~i~~~-~~d~vl~~GDl~~~~~~~~~---~~~~~~~~~~l~ 193 (333)
...++|+..+|+|..-. . ...++++++. +..++|.+||+......... .....+.+..+.
T Consensus 24 ~~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m~ 103 (517)
T COG0737 24 TVKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNALG 103 (517)
T ss_pred ceeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHHHhhcC
Confidence 56799999999986432 1 2244455443 34679999999975443222 122223333332
Q ss_pred cCCceEEccCCCCCCCCCCccccccccccccccCc---C---C---CCCCCCceEEEEeCCEE--EEEEeccC--CC---
Q 019979 194 SARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPF---E---E---SGSNSNLYYSFDVAGAH--LIMLGSYA--DY--- 257 (333)
Q Consensus 194 ~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~p~---~---~---~~~~~~~~ys~~~g~v~--fi~lds~~--~~--- 257 (333)
.=..++||||+..... ....+.+....|. | . .....+.|.-++.++++ +|.+.+.. .+
T Consensus 104 ---yDa~tiGNHEFd~g~~---~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~~~~~~~ 177 (517)
T COG0737 104 ---YDAMTLGNHEFDYGLE---ALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGLTTPTIPTWEKP 177 (517)
T ss_pred ---CcEEeecccccccCHH---HHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEEecCCcccccccc
Confidence 2355899999964321 1222222222221 0 0 11123678889999854 55555311 11
Q ss_pred C-----CCHHHHHHHHHHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCcccc
Q 019979 258 D-----EYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAY 328 (333)
Q Consensus 258 ~-----~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y 328 (333)
+ .-.+..+++++.+.+.+.+...-+|+++|-+............. .... .. .++|+++.||.|.+
T Consensus 178 ~~~~~~~f~d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d~~~~~~~~~-~~~~----~~-~~iD~i~~GH~H~~ 247 (517)
T COG0737 178 NAIEGVTFRDPIEAAKKYIPELKGEGVDVIIALSHLGIEDDLELASEVPG-DVDV----AV-PGIDLIIGGHSHTV 247 (517)
T ss_pred cccCCcEEcCHHHHHHHHHHHHHhcCCCEEEEEeccCcCccccccccccc-cccc----cc-cCcceEeccCCccc
Confidence 1 01345566666666655433677999999987543221110000 0000 00 44999999999964
No 79
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=98.11 E-value=6.4e-05 Score=73.90 Aligned_cols=156 Identities=13% Similarity=0.144 Sum_probs=74.2
Q ss_pred HHHHhhcCCC-CeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCCCCCccccccccccccccCc---C
Q 019979 154 TLDHIGQCKY-DVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPF---E 229 (333)
Q Consensus 154 ~~~~i~~~~~-d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~p~---~ 229 (333)
.++++++..+ -+++.+||+...... ..+..-...++-+..--.=..++||||+..... .+..+.+....|. |
T Consensus 40 ~i~~~r~~~~n~l~ldaGD~~~gs~~-~~~~~g~~~i~~~N~~g~Da~~lGNHEFd~G~~---~l~~~~~~~~fp~l~aN 115 (550)
T TIGR01530 40 EINKLRAESKNALVLHAGDAIIGTLY-FTLFGGRADAALMNAAGFDFFTLGNHEFDAGNE---GLKEFLEPLEIPVLSAN 115 (550)
T ss_pred HHHHHHhhCCCeEEEECCCCCCCccc-hhhcCCHHHHHHHhccCCCEEEeccccccCCHH---HHHHHHHhCCCCEEEEe
Confidence 4455554444 578899999854321 111110112222222223456899999964321 1222222111221 0
Q ss_pred ---CCC----CCCCceEEEEeCC--EEEEEEeccCC-C---CCC-----HHHHHHHHHHhhcccCCCCCeEEEEeccccc
Q 019979 230 ---ESG----SNSNLYYSFDVAG--AHLIMLGSYAD-Y---DEY-----SDQYRWLKDDLSKVDRKKTPWLLVLLHVPWY 291 (333)
Q Consensus 230 ---~~~----~~~~~~ys~~~g~--v~fi~lds~~~-~---~~~-----~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~ 291 (333)
... ..-..|..++.++ +-||.+.+... . ... .+..+=+++..++.++++...+|+++|....
T Consensus 116 v~~~~~~~~~~~~~p~~i~~~~g~kIgiiGl~~~~~~~~~~~~~~~~~f~d~~~~~~~~v~~Lk~~g~D~II~lsH~g~~ 195 (550)
T TIGR01530 116 VIPDAASILHGKWKPSAIFERAGEKIAIIGLDTVKKTVESSSPGKDIKFIDEIAAAQIAANALKQQGINKIILLSHAGFE 195 (550)
T ss_pred eecCCCcccccCcCceEEEEECCeEEEEEEeecCcccccccCCCCceEECCHHHHHHHHHHHHHhCCCCEEEEEecCCcH
Confidence 000 0124566678887 55666654211 0 010 1111222222222222356779999997632
Q ss_pred cCCCCCCCCChhHHHHHHHHHHhC-CCcEEEecCcccc
Q 019979 292 NSNEAHQGEGDGMMAIMEPLLYAA-SVDLVLAGHVHAY 328 (333)
Q Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~-~v~lvl~GH~H~y 328 (333)
. + ..+.++. +||++|+||.|.+
T Consensus 196 ~---------d------~~la~~~~~iD~IigGHsH~~ 218 (550)
T TIGR01530 196 K---------N------CEIAQKINDIDVIVSGDSHYL 218 (550)
T ss_pred H---------H------HHHHhcCCCCCEEEeCCCCcc
Confidence 1 0 1233333 8999999999985
No 80
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=98.09 E-value=5e-06 Score=69.08 Aligned_cols=52 Identities=17% Similarity=0.249 Sum_probs=34.2
Q ss_pred HHhhcCCCCeEEccccccccccc--hhhHHHHHHhhhhhhcCCceEEccCCCCCC
Q 019979 156 DHIGQCKYDVHLLPGDLSYADYM--QHRWDTFGELVQPLASARPWMVTQGNHEKE 208 (333)
Q Consensus 156 ~~i~~~~~d~vl~~GDl~~~~~~--~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~ 208 (333)
+.+.+.+||.++++||+++.... ...+.... ........+|++.++||||..
T Consensus 35 ~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 35 RLIEEYGPERLIILGDLKHSFGGLSRQEFEEVA-FLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred HHHHhcCCCEEEEeCcccccccccCHHHHHHHH-HHHhccCCCeEEEEcccCccc
Confidence 34457899999999999975432 11222211 223334458999999999984
No 81
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=98.02 E-value=4.9e-05 Score=69.25 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=25.0
Q ss_pred CCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhC-CCcEEEecCcccc
Q 019979 278 KTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAA-SVDLVLAGHVHAY 328 (333)
Q Consensus 278 ~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~v~lvl~GH~H~y 328 (333)
+...+|+++|..-+. . . ..+.++. +||++|.||.|.+
T Consensus 207 gvD~II~LsH~g~~~---------~--d---~~lA~~v~gIDvIigGHsH~~ 244 (313)
T cd08162 207 GINKIILLSHLQQIS---------I--E---QALAALLSGVDVIIAGGSNTL 244 (313)
T ss_pred CCCEEEEEecccccc---------h--H---HHHHhcCCCCCEEEeCCCCcc
Confidence 566799999984111 0 0 1234443 8999999999986
No 82
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=97.97 E-value=1.8e-05 Score=68.51 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=48.4
Q ss_pred eeEEEEeecCCCCCh--------------hhHHHHh----hcCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCce
Q 019979 137 ITFAVAGDLGQTGWT--------------KSTLDHI----GQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPW 198 (333)
Q Consensus 137 ~~f~~~gD~~~~~~~--------------~~~~~~i----~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~ 198 (333)
-+.++++|+|.+... .++++.+ .+.+||.+|++||+.........+..+.+.++.+. .++
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~~--~~v 92 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKGLEWRFIREFIEVTF--RDL 92 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCChHHHHHHHHHHHhcC--CcE
Confidence 457899999986421 1334433 46789999999999965443245555555555543 589
Q ss_pred EEccCCCCCC
Q 019979 199 MVTQGNHEKE 208 (333)
Q Consensus 199 ~~~~GNHD~~ 208 (333)
+.++||||..
T Consensus 93 ~~V~GNHD~~ 102 (225)
T TIGR00024 93 ILIRGNHDAL 102 (225)
T ss_pred EEECCCCCCc
Confidence 9999999974
No 83
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=97.96 E-value=0.00014 Score=67.97 Aligned_cols=76 Identities=12% Similarity=0.251 Sum_probs=55.4
Q ss_pred CCCeeEEEEeecCCCCCh------hhHHHHhh-----cCCCCeEEccccccccccc-------------hhhHHHHHHhh
Q 019979 134 QFPITFAVAGDLGQTGWT------KSTLDHIG-----QCKYDVHLLPGDLSYADYM-------------QHRWDTFGELV 189 (333)
Q Consensus 134 ~~~~~f~~~gD~~~~~~~------~~~~~~i~-----~~~~d~vl~~GDl~~~~~~-------------~~~~~~~~~~~ 189 (333)
..++++++++|.|.+... ...++.+. ..+...++.+||+++.-+. .++++.+.+++
T Consensus 223 ~e~v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L 302 (481)
T COG1311 223 DERVYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFL 302 (481)
T ss_pred CcceEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHHHH
Confidence 577899999999986432 23444443 3456899999999974322 34566777777
Q ss_pred hhhhcCCceEEccCCCCCCC
Q 019979 190 QPLASARPWMVTQGNHEKES 209 (333)
Q Consensus 190 ~~l~~~~P~~~~~GNHD~~~ 209 (333)
..+...+-++..|||||...
T Consensus 303 ~~vp~~I~v~i~PGnhDa~r 322 (481)
T COG1311 303 DQVPEHIKVFIMPGNHDAVR 322 (481)
T ss_pred hhCCCCceEEEecCCCCccc
Confidence 77777788999999999953
No 84
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=97.90 E-value=2.4e-05 Score=68.75 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=46.7
Q ss_pred EEEeecCCCCCh------hhHHHHhhcC-----CCCeEEccccccccccc-------------hhhHHHHHHhhhhhhcC
Q 019979 140 AVAGDLGQTGWT------KSTLDHIGQC-----KYDVHLLPGDLSYADYM-------------QHRWDTFGELVQPLASA 195 (333)
Q Consensus 140 ~~~gD~~~~~~~------~~~~~~i~~~-----~~d~vl~~GDl~~~~~~-------------~~~~~~~~~~~~~l~~~ 195 (333)
+++||+|.+... +.+++.+... ++|.++++||+++.... ...+..+.+.++.+...
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 81 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPSH 81 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcccC
Confidence 689999975431 2233444332 57999999999975210 11234455677777767
Q ss_pred CceEEccCCCCCC
Q 019979 196 RPWMVTQGNHEKE 208 (333)
Q Consensus 196 ~P~~~~~GNHD~~ 208 (333)
+|+++++||||..
T Consensus 82 ~~v~~ipGNHD~~ 94 (243)
T cd07386 82 IKIIIIPGNHDAV 94 (243)
T ss_pred CeEEEeCCCCCcc
Confidence 9999999999985
No 85
>PHA02239 putative protein phosphatase
Probab=97.89 E-value=2.2e-05 Score=68.44 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=43.1
Q ss_pred eEEEEeecCCCCC-hhhHHHHhhcC--CCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCC
Q 019979 138 TFAVAGDLGQTGW-TKSTLDHIGQC--KYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEK 207 (333)
Q Consensus 138 ~f~~~gD~~~~~~-~~~~~~~i~~~--~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~ 207 (333)
+++++||+|.... ..++++.+... ..|.++++||+++.+... -+.+..+++.+....++++++||||.
T Consensus 2 ~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s--~~v~~~l~~~~~~~~~~~~l~GNHE~ 72 (235)
T PHA02239 2 AIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRS--KDVVNYIFDLMSNDDNVVTLLGNHDD 72 (235)
T ss_pred eEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCCh--HHHHHHHHHHhhcCCCeEEEECCcHH
Confidence 6899999995421 23455555432 359999999999865431 12222222222233579999999997
No 86
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.87 E-value=0.00016 Score=77.21 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=30.7
Q ss_pred CCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhC-CCcEEEecCccccc
Q 019979 277 KKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAA-SVDLVLAGHVHAYE 329 (333)
Q Consensus 277 ~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~v~lvl~GH~H~y~ 329 (333)
+++..+|+++|.......... +. .....++.++. +||+++.||.|..-
T Consensus 233 ~gaDvII~l~H~G~~~~~~~~-~~----en~~~~la~~~~gID~Il~GHsH~~~ 281 (1163)
T PRK09419 233 GGADVIVALAHSGIESEYQSS-GA----EDSVYDLAEKTKGIDAIVAGHQHGLF 281 (1163)
T ss_pred cCCCEEEEEeccCcCCCCCCC-Cc----chHHHHHHHhCCCCcEEEeCCCcccc
Confidence 467789999998864322111 11 12334455453 89999999999864
No 87
>PRK04036 DNA polymerase II small subunit; Validated
Probab=97.85 E-value=3.7e-05 Score=74.53 Aligned_cols=76 Identities=12% Similarity=0.218 Sum_probs=53.5
Q ss_pred CCCeeEEEEeecCCCCCh------hhHHHHhh---------cCCCCeEEccccccccccc-------------hhhHHHH
Q 019979 134 QFPITFAVAGDLGQTGWT------KSTLDHIG---------QCKYDVHLLPGDLSYADYM-------------QHRWDTF 185 (333)
Q Consensus 134 ~~~~~f~~~gD~~~~~~~------~~~~~~i~---------~~~~d~vl~~GDl~~~~~~-------------~~~~~~~ 185 (333)
..+.+++++||+|.+... +..++.+. ..+++.+|++||+++..+. ...++.+
T Consensus 241 ~~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l 320 (504)
T PRK04036 241 DEKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAA 320 (504)
T ss_pred CCccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHH
Confidence 567899999999976531 23444454 5679999999999974221 1123445
Q ss_pred HHhhhhhhcCCceEEccCCCCCCC
Q 019979 186 GELVQPLASARPWMVTQGNHEKES 209 (333)
Q Consensus 186 ~~~~~~l~~~~P~~~~~GNHD~~~ 209 (333)
.+.+..+...+|+++++||||...
T Consensus 321 ~~~L~~L~~~i~V~~ipGNHD~~~ 344 (504)
T PRK04036 321 AEYLKQIPEDIKIIISPGNHDAVR 344 (504)
T ss_pred HHHHHhhhcCCeEEEecCCCcchh
Confidence 566777767789999999999853
No 88
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=97.78 E-value=0.00039 Score=61.19 Aligned_cols=133 Identities=14% Similarity=0.187 Sum_probs=75.2
Q ss_pred EEEEeecCCCCCh------hhHHHHhh-----------cCCCCeEEccccccccccc-------------------hhhH
Q 019979 139 FAVAGDLGQTGWT------KSTLDHIG-----------QCKYDVHLLPGDLSYADYM-------------------QHRW 182 (333)
Q Consensus 139 f~~~gD~~~~~~~------~~~~~~i~-----------~~~~d~vl~~GDl~~~~~~-------------------~~~~ 182 (333)
++++||++.+... +.+++.+. ..++.-+|++||.+...+. ....
T Consensus 2 i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (257)
T cd07387 2 IALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAV 81 (257)
T ss_pred EEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhccccccchhhHHHH
Confidence 6788998876542 12223332 2345579999999874332 2234
Q ss_pred HHHHHhhhhhhcCCceEEccCCCCCCCCCCccccccccccccccCcC-CCCCCCCceEEEEeCCEEEEEEeccC-----C
Q 019979 183 DTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFE-ESGSNSNLYYSFDVAGAHLIMLGSYA-----D 256 (333)
Q Consensus 183 ~~~~~~~~~l~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~ys~~~g~v~fi~lds~~-----~ 256 (333)
+.+..++..+.+.+|+...|||||-.+...-+..+.. ..|..... ..-..-..-|.|++++++|++..... .
T Consensus 82 ~~ld~~l~~l~~~i~V~imPG~~Dp~~~~lPQqplh~--~lfp~s~~~~~~~~vtNP~~~~i~g~~vLgtsGqni~Di~k 159 (257)
T cd07387 82 KELDNFLSQLASSVPVDLMPGEFDPANHSLPQQPLHR--CLFPKSSNYSTLNLVTNPYEFSIDGVRVLGTSGQNVDDILK 159 (257)
T ss_pred HHHHHHHHhhhcCCeEEECCCCCCcccccCCCCCCCH--HHhhcccccCCcEEeCCCeEEEECCEEEEEECCCCHHHHHH
Confidence 4555677788888999999999999643221122111 11110000 00001133456999999999987632 1
Q ss_pred CCCCHHHHHHHHHHhhc
Q 019979 257 YDEYSDQYRWLKDDLSK 273 (333)
Q Consensus 257 ~~~~~~q~~WL~~~L~~ 273 (333)
+...++-++.|+..|+.
T Consensus 160 y~~~~~~l~~me~~L~w 176 (257)
T cd07387 160 YSSLESRLDILERTLKW 176 (257)
T ss_pred hCCCCCHHHHHHHHHHh
Confidence 22334446677777665
No 89
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=97.74 E-value=4.7e-05 Score=67.87 Aligned_cols=65 Identities=22% Similarity=0.163 Sum_probs=43.6
Q ss_pred eEEEEeecCCCCC-hhhHHHHhh-cCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCC
Q 019979 138 TFAVAGDLGQTGW-TKSTLDHIG-QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEK 207 (333)
Q Consensus 138 ~f~~~gD~~~~~~-~~~~~~~i~-~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~ 207 (333)
+++++||+|.... ..++++.+. ..+.|.++++||+++.+... ....+.+..+ ..+++.+.||||.
T Consensus 2 ~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s---~~vl~~l~~l--~~~~~~VlGNHD~ 68 (275)
T PRK00166 2 ATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDS---LEVLRFVKSL--GDSAVTVLGNHDL 68 (275)
T ss_pred cEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCH---HHHHHHHHhc--CCCeEEEecChhH
Confidence 5789999986532 244556554 35789999999999866532 1223333333 2468899999998
No 90
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=97.73 E-value=5.3e-05 Score=66.24 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=44.1
Q ss_pred eEEEEeecCCCCC-hhhHHHHhhc----------CCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCC
Q 019979 138 TFAVAGDLGQTGW-TKSTLDHIGQ----------CKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHE 206 (333)
Q Consensus 138 ~f~~~gD~~~~~~-~~~~~~~i~~----------~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD 206 (333)
+++++||+|.... ..++++.+.. .+.|.++++||+++.+.. -....+.+..+...-.++.+.||||
T Consensus 2 ~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~---s~evl~~l~~l~~~~~~~~v~GNHE 78 (234)
T cd07423 2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPD---SPEVLRLVMSMVAAGAALCVPGNHD 78 (234)
T ss_pred CeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCC---HHHHHHHHHHHhhCCcEEEEECCcH
Confidence 6899999986532 2455666521 136899999999986543 2223344444433346789999999
Q ss_pred C
Q 019979 207 K 207 (333)
Q Consensus 207 ~ 207 (333)
.
T Consensus 79 ~ 79 (234)
T cd07423 79 N 79 (234)
T ss_pred H
Confidence 7
No 91
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.71 E-value=0.00077 Score=68.52 Aligned_cols=184 Identities=18% Similarity=0.103 Sum_probs=88.5
Q ss_pred CCCeeEEEEeecCCCCC-----------------hhhHHHHhhcCCC-CeEEccccccccccchhh---------HH--H
Q 019979 134 QFPITFAVAGDLGQTGW-----------------TKSTLDHIGQCKY-DVHLLPGDLSYADYMQHR---------WD--T 184 (333)
Q Consensus 134 ~~~~~f~~~gD~~~~~~-----------------~~~~~~~i~~~~~-d~vl~~GDl~~~~~~~~~---------~~--~ 184 (333)
.-.++|+..+|+|..-. ....++++++..+ -++|.+||++........ .+ -
T Consensus 113 ~~~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~~P 192 (814)
T PRK11907 113 TVDVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENPNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQHP 192 (814)
T ss_pred ceEEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcccchhhhccccccCcchH
Confidence 34699999999986410 0224555554444 478999999864332111 00 1
Q ss_pred HHHhhhhhhcCCceEEccCCCCCCCCCCccccccccccccccCc---C----CCC-CCCCceEEEEe-----CC------
Q 019979 185 FGELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPF---E----ESG-SNSNLYYSFDV-----AG------ 245 (333)
Q Consensus 185 ~~~~~~~l~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~p~---~----~~~-~~~~~~ys~~~-----g~------ 245 (333)
..+.+..+. -=..++||||+..... .+..+.+....|. | ..+ ..-..|--++. ++
T Consensus 193 ~i~amN~LG---yDA~tLGNHEFDyG~d---~L~~~l~~a~fPvl~ANV~~~~~~~~~~~PY~I~e~~~~d~~G~~~~vK 266 (814)
T PRK11907 193 MYAALEALG---FDAGTLGNHEFNYGLD---YLEKVIATANMPIVNANVLDPTTGDFLYTPYTIVTKTFTDTEGKKVTLN 266 (814)
T ss_pred HHHHHhccC---CCEEEechhhcccCHH---HHHHHHHhCCCCEEEeeeeecCCCCccCCCeEEEEEEEecCCCcccceE
Confidence 122232222 2245899999964322 1111111111221 0 000 01133444443 33
Q ss_pred EEEEEEeccC--CCCC--------CHHHHHHHHHHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhC
Q 019979 246 AHLIMLGSYA--DYDE--------YSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAA 315 (333)
Q Consensus 246 v~fi~lds~~--~~~~--------~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~ 315 (333)
+-||++-+.. .++. -.+-.+-+++...+.+.++++.+|++.|..+.........++. -..+.+--
T Consensus 267 IGiIGlvtp~~~~w~~~~l~g~v~f~D~veaa~~~v~~Lr~~GaDvIIaLsH~G~~~d~~~~~~En~-----~~~LA~v~ 341 (814)
T PRK11907 267 IGITGIVPPQILNWDKANLEGKVIVRDAVEAVRDIIPTMRAAGADIVLVLSHSGIGDDQYEVGEENV-----GYQIASLS 341 (814)
T ss_pred EEEEEeCchhhhhcccccccCCeEECCHHHHHHHHHHHHHhcCCCEEEEEeCCCcccccccccccch-----hhHHhcCC
Confidence 4556554311 1110 1222333444444443346778999999886432111111111 11222234
Q ss_pred CCcEEEecCcccc
Q 019979 316 SVDLVLAGHVHAY 328 (333)
Q Consensus 316 ~v~lvl~GH~H~y 328 (333)
+||+++.||.|..
T Consensus 342 GIDaIvgGHsH~~ 354 (814)
T PRK11907 342 GVDAVVTGHSHAE 354 (814)
T ss_pred CCCEEEECCCCCc
Confidence 8999999999985
No 92
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.70 E-value=5.3e-05 Score=64.93 Aligned_cols=64 Identities=23% Similarity=0.171 Sum_probs=41.7
Q ss_pred eEEEEeecCCCCC-hhhHHHHhhc-CCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCC
Q 019979 138 TFAVAGDLGQTGW-TKSTLDHIGQ-CKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKE 208 (333)
Q Consensus 138 ~f~~~gD~~~~~~-~~~~~~~i~~-~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~ 208 (333)
|++++||+|.... ..++++.+.. .++|.++++||+++.+... . +.++.+.. .+++.+.||||..
T Consensus 2 ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~---~---~~~~~l~~-~~~~~v~GNhe~~ 67 (207)
T cd07424 2 RDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPES---L---ACLELLLE-PWFHAVRGNHEQM 67 (207)
T ss_pred CEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCH---H---HHHHHHhc-CCEEEeECCChHH
Confidence 6899999995432 1234444432 4689999999999865432 1 22333322 4688999999974
No 93
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.68 E-value=0.00094 Score=67.75 Aligned_cols=47 Identities=26% Similarity=0.203 Sum_probs=28.0
Q ss_pred CCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhC-CCcEEEecCccccc
Q 019979 277 KKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAA-SVDLVLAGHVHAYE 329 (333)
Q Consensus 277 ~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~v~lvl~GH~H~y~ 329 (333)
+++..+|+++|..+...... ... +.....+++. +||++|.||.|..-
T Consensus 243 ~GaDvIIaLsH~G~~~d~~~---~~~---ena~~~l~~v~gID~IlgGHsH~~~ 290 (780)
T PRK09418 243 EGADVIVALAHSGVDKSGYN---VGM---ENASYYLTEVPGVDAVLMGHSHTEV 290 (780)
T ss_pred cCCCEEEEEeccCccccccc---ccc---hhhhHHHhcCCCCCEEEECCCCCcc
Confidence 35778999999876432110 000 1111113444 89999999999753
No 94
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.64 E-value=7.8e-05 Score=61.66 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=39.6
Q ss_pred EEEeecCCCCCh----------------hhHHHHhhc--CCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEc
Q 019979 140 AVAGDLGQTGWT----------------KSTLDHIGQ--CKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVT 201 (333)
Q Consensus 140 ~~~gD~~~~~~~----------------~~~~~~i~~--~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~ 201 (333)
.+++|+|.+... +.+++.+.+ .++|.|+++||+++...... + .+.++.+. .|++.+
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~~~-~---~~~l~~~~--~~~~~v 75 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKAGT-E---LELLSRLN--GRKHLI 75 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCChHH-H---HHHHHhCC--CCeEEE
Confidence 367888876431 223444433 36899999999997544221 1 22333332 689999
Q ss_pred cCCCCCC
Q 019979 202 QGNHEKE 208 (333)
Q Consensus 202 ~GNHD~~ 208 (333)
+||||..
T Consensus 76 ~GNHD~~ 82 (168)
T cd07390 76 KGNHDSS 82 (168)
T ss_pred eCCCCch
Confidence 9999984
No 95
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=97.58 E-value=9e-05 Score=64.00 Aligned_cols=64 Identities=20% Similarity=0.188 Sum_probs=42.5
Q ss_pred eeEEEEeecCCCCC-hhhHHHHhh-cCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCC
Q 019979 137 ITFAVAGDLGQTGW-TKSTLDHIG-QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEK 207 (333)
Q Consensus 137 ~~f~~~gD~~~~~~-~~~~~~~i~-~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~ 207 (333)
=|++++||+|.... ..++++.+. ..+.|.++++||+++.+.... +.++.+.. ..++.+.||||.
T Consensus 15 ~ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~------~~l~~l~~-~~~~~v~GNHE~ 80 (218)
T PRK09968 15 RHIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESL------NVLRLLNQ-PWFISVKGNHEA 80 (218)
T ss_pred CeEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHH------HHHHHHhh-CCcEEEECchHH
Confidence 38999999986532 234555554 457899999999998665321 12222222 346789999997
No 96
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.56 E-value=0.00012 Score=63.21 Aligned_cols=73 Identities=19% Similarity=0.084 Sum_probs=46.0
Q ss_pred EECCCCCCCeeEEEEeecCCCCC-hhhHHHHhhcC-CCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCC
Q 019979 128 FKTPPAQFPITFAVAGDLGQTGW-TKSTLDHIGQC-KYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNH 205 (333)
Q Consensus 128 F~t~p~~~~~~f~~~gD~~~~~~-~~~~~~~i~~~-~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNH 205 (333)
|+.-+.+.--|+.++||+|.... ..++++.+... +.|-++++||+++.+.... +.++-+.. ..+..+.|||
T Consensus 8 ~~~~~~~~~~ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~------~vl~~l~~-~~~~~v~GNH 80 (218)
T PRK11439 8 YQRIAGHQWRHIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSL------RCLQLLEE-HWVRAVRGNH 80 (218)
T ss_pred eecccCCCCCeEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHH------HHHHHHHc-CCceEeeCch
Confidence 33333333338999999986532 24566666533 6899999999998665321 12222222 2467899999
Q ss_pred CC
Q 019979 206 EK 207 (333)
Q Consensus 206 D~ 207 (333)
|.
T Consensus 81 E~ 82 (218)
T PRK11439 81 EQ 82 (218)
T ss_pred HH
Confidence 96
No 97
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.56 E-value=0.00012 Score=64.39 Aligned_cols=67 Identities=18% Similarity=0.197 Sum_probs=42.3
Q ss_pred eEEEEeecCCCCC-hhhHHHHhhc---------CCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCC
Q 019979 138 TFAVAGDLGQTGW-TKSTLDHIGQ---------CKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEK 207 (333)
Q Consensus 138 ~f~~~gD~~~~~~-~~~~~~~i~~---------~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~ 207 (333)
|+.++||+|.... ..++++.+.. .+-|.++++||+++.+... -+ ..+.+..+...-.++++.||||.
T Consensus 2 ~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S--~~-vl~~~~~~~~~~~~~~l~GNHE~ 78 (245)
T PRK13625 2 KYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHS--LR-MIEIVWELVEKKAAYYVPGNHCN 78 (245)
T ss_pred ceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcCh--HH-HHHHHHHHhhCCCEEEEeCccHH
Confidence 6899999986432 2344555431 1347899999999876531 11 22233333333578999999996
No 98
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=97.52 E-value=0.00033 Score=62.84 Aligned_cols=173 Identities=19% Similarity=0.187 Sum_probs=94.1
Q ss_pred eeEEEEeecCCCCC-hhhHHHHhhc---CCCCeEEccccccccccc--------hhhHHH---HHHhh-hhhhcCCceEE
Q 019979 137 ITFAVAGDLGQTGW-TKSTLDHIGQ---CKYDVHLLPGDLSYADYM--------QHRWDT---FGELV-QPLASARPWMV 200 (333)
Q Consensus 137 ~~f~~~gD~~~~~~-~~~~~~~i~~---~~~d~vl~~GDl~~~~~~--------~~~~~~---~~~~~-~~l~~~~P~~~ 200 (333)
+|+++-|++|..-. --+++..+.+ .++|++|++||+---.+. ...+.. |.++. ..+.+.+|.++
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF 80 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF 80 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence 47899999985422 1234444443 489999999999421111 112222 22222 23445588899
Q ss_pred ccCCCCCCCCCCccccccccccccccCcCCCCCCCCceE-----EEEeCCEEEEEEec---cCCCCCC--------H---
Q 019979 201 TQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYY-----SFDVAGAHLIMLGS---YADYDEY--------S--- 261 (333)
Q Consensus 201 ~~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~y-----s~~~g~v~fi~lds---~~~~~~~--------~--- 261 (333)
+=||||..+. .. .+|..+- -..+.|| ...+||+|+-.|.. ..+|..+ .
T Consensus 81 IGGNHEAsny----------L~--eLpyGGw-VApNIyYlG~agVv~~~gvRIggiSGI~k~~dy~kgh~E~ppyn~sti 147 (456)
T KOG2863|consen 81 IGGNHEASNY----------LQ--ELPYGGW-VAPNIYYLGYAGVVNFGGVRIGGISGIYKEHDYRKGHFEWPPYNNSTI 147 (456)
T ss_pred ecCchHHHHH----------HH--hcccCce-eccceEEeeecceEEECCEEEeeccchhhhhhcccCCCCCCCccchhh
Confidence 9999998431 11 1222110 0123444 46789999999886 1122110 0
Q ss_pred ----HHHHHHHHHhhcccCCCCCeEEEEeccccccCCCCCCCCC-----------------hhHHHHHHHHHHhCCCcEE
Q 019979 262 ----DQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEG-----------------DGMMAIMEPLLYAASVDLV 320 (333)
Q Consensus 262 ----~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~-----------------~~~~~~l~~l~~~~~v~lv 320 (333)
--+..=...|++. +.|--|.++|.=+.+.. ..|+. .-....+.+||++.+...+
T Consensus 148 RsiYHvR~~dV~~Lkql---k~piDIfLSHDWP~GI~--~yGd~~~LLr~KPFFrqeie~~~LGSp~~~eLL~~LkP~yW 222 (456)
T KOG2863|consen 148 RSIYHVRISDVAKLKQL---KHPIDIFLSHDWPRGIY--YYGDKKQLLRLKPFFRQEIEEGKLGSPALEELLEDLKPQYW 222 (456)
T ss_pred hhhhhhhhhhhHHHHhh---cCcceEEeecCCCcchh--hcCCHHHHHhcCcHHHHHHhcCCcCChHHHHHHHHhCcchh
Confidence 0011112234444 33446888886432211 12211 1123577889999999999
Q ss_pred EecCccc
Q 019979 321 LAGHVHA 327 (333)
Q Consensus 321 l~GH~H~ 327 (333)
|+.|.|+
T Consensus 223 fsAHLH~ 229 (456)
T KOG2863|consen 223 FSAHLHV 229 (456)
T ss_pred hhhhHhh
Confidence 9999996
No 99
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=97.51 E-value=0.00016 Score=62.62 Aligned_cols=67 Identities=21% Similarity=0.215 Sum_probs=42.0
Q ss_pred EEEEeecCCCCC-hhhHHHHhhcC--------CCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCC
Q 019979 139 FAVAGDLGQTGW-TKSTLDHIGQC--------KYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKE 208 (333)
Q Consensus 139 f~~~gD~~~~~~-~~~~~~~i~~~--------~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~ 208 (333)
+.++||+|.... ..++++.+... ..|.++++||+++.+... ....+.+..+...-.++.+.||||..
T Consensus 1 ~~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S---~~vl~~l~~l~~~~~~~~l~GNHE~~ 76 (222)
T cd07413 1 YDFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEI---RELLEIVKSMVDAGHALAVMGNHEFN 76 (222)
T ss_pred CEEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCH---HHHHHHHHHhhcCCCEEEEEccCcHH
Confidence 368999986532 24455555321 468999999999876531 12223333333334688899999973
No 100
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=97.48 E-value=0.0002 Score=63.65 Aligned_cols=67 Identities=12% Similarity=0.114 Sum_probs=41.6
Q ss_pred eEEEEeecCCCCC-hhhHHHHhhc------CCCCeEEccccccccccchhhHHHHHHhhhhhhcC---CceEEccCCCCC
Q 019979 138 TFAVAGDLGQTGW-TKSTLDHIGQ------CKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASA---RPWMVTQGNHEK 207 (333)
Q Consensus 138 ~f~~~gD~~~~~~-~~~~~~~i~~------~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~---~P~~~~~GNHD~ 207 (333)
++.++||+|.... .+++++.+.. ...+.+|++||+++.+....+ ..+.+..+... ..++++.||||.
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~e---Vld~L~~l~~~~~~~~vv~LrGNHE~ 79 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRK---VIDFLISLPEKHPKQRHVFLCGNHDF 79 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHH---HHHHHHHhhhcccccceEEEecCChH
Confidence 6889999986532 2445555532 235689999999987653222 22233333222 247889999995
No 101
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=97.45 E-value=0.0023 Score=64.04 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=31.3
Q ss_pred HHHHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHh-CCCcEEEecCcccc
Q 019979 267 LKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYA-ASVDLVLAGHVHAY 328 (333)
Q Consensus 267 L~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvl~GH~H~y 328 (333)
+++...+.+.+++..+|++.|............+ ..... +.+ -+||+++.||.|..
T Consensus 207 a~~~v~~Lk~~gaDvII~LsH~G~~~d~~~~~ae-----n~~~~-l~~v~gID~Il~GHsH~~ 263 (649)
T PRK09420 207 ARKYVPEMKEKGADIVVAIPHSGISADPYKAMAE-----NSVYY-LSEVPGIDAIMFGHSHAV 263 (649)
T ss_pred HHHHHHHHHHcCCCEEEEEecCCcCCCCcccccc-----chhHH-HhcCCCCCEEEeCCCCcc
Confidence 3333333333357789999998763221100011 11112 344 38999999999975
No 102
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=97.40 E-value=0.0031 Score=50.17 Aligned_cols=66 Identities=21% Similarity=0.179 Sum_probs=40.1
Q ss_pred eEEEEeecCCCCCh--------------hhHHHHhh-cCC-CCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEc
Q 019979 138 TFAVAGDLGQTGWT--------------KSTLDHIG-QCK-YDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVT 201 (333)
Q Consensus 138 ~f~~~gD~~~~~~~--------------~~~~~~i~-~~~-~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~ 201 (333)
.+-++||+|.+... ..++...+ -.+ -|.+.++||++..... -..+...++.|...+ ..+
T Consensus 5 mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~---~~~a~~IlerLnGrk--hlv 79 (186)
T COG4186 5 MMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANR---ERAAGLILERLNGRK--HLV 79 (186)
T ss_pred EEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccch---hhHHHHHHHHcCCcE--EEe
Confidence 35678999876321 12333332 233 4789999999864432 223345566665443 779
Q ss_pred cCCCCCC
Q 019979 202 QGNHEKE 208 (333)
Q Consensus 202 ~GNHD~~ 208 (333)
+||||-.
T Consensus 80 ~GNhDk~ 86 (186)
T COG4186 80 PGNHDKC 86 (186)
T ss_pred eCCCCCC
Confidence 9999983
No 103
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=97.39 E-value=0.0028 Score=63.34 Aligned_cols=45 Identities=24% Similarity=0.240 Sum_probs=27.6
Q ss_pred CCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhC-CCcEEEecCcccc
Q 019979 278 KTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAA-SVDLVLAGHVHAY 328 (333)
Q Consensus 278 ~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~v~lvl~GH~H~y 328 (333)
++..+|++.|.......... . . +.....+++. +||++++||.|..
T Consensus 195 gaDvII~LsH~G~~~d~~~~-~-~----en~~~~l~~v~gID~Il~GHsH~~ 240 (626)
T TIGR01390 195 GADIIVALAHSGISADPYQP-G-A----ENSAYYLTKVPGIDAVLFGHSHAV 240 (626)
T ss_pred CCCEEEEEeccCcCCCcccc-c-c----chHHHHHhcCCCCCEEEcCCCCcc
Confidence 56779999998764321100 1 1 1111223443 8999999999984
No 104
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=97.36 E-value=0.00026 Score=62.44 Aligned_cols=64 Identities=22% Similarity=0.140 Sum_probs=42.7
Q ss_pred EEEeecCCCCC-hhhHHHHhh-cCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCC
Q 019979 140 AVAGDLGQTGW-TKSTLDHIG-QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKE 208 (333)
Q Consensus 140 ~~~gD~~~~~~-~~~~~~~i~-~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~ 208 (333)
.++||+|.... .+++++.+. ..+.|.++++||+++.+... .+..+.+..+. ..+..+.||||..
T Consensus 2 yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s---~evl~~l~~l~--~~v~~VlGNHD~~ 67 (257)
T cd07422 2 YAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDS---LETLRFVKSLG--DSAKTVLGNHDLH 67 (257)
T ss_pred EEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCH---HHHHHHHHhcC--CCeEEEcCCchHH
Confidence 58999986532 245666664 34689999999999866532 12233333332 3678999999983
No 105
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=97.30 E-value=0.00031 Score=60.85 Aligned_cols=65 Identities=23% Similarity=0.183 Sum_probs=42.0
Q ss_pred EEeecCCCCC-hhhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhc-CCceEEccCCCCCC
Q 019979 141 VAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLAS-ARPWMVTQGNHEKE 208 (333)
Q Consensus 141 ~~gD~~~~~~-~~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~-~~P~~~~~GNHD~~ 208 (333)
++||+|.... ..++++.+.....|.+|++||+++.+... ......+..+.. ..+++.+.||||..
T Consensus 2 ~igDiHg~~~~l~~~l~~~~~~~~d~li~lGD~vdrg~~~---~~~l~~l~~~~~~~~~~~~l~GNHe~~ 68 (225)
T cd00144 2 VIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDS---VEVIDLLLALKILPDNVILLRGNHEDM 68 (225)
T ss_pred EEeCCCCCHHHHHHHHHHhCCCCCCEEEEECCEeCCCCCc---HHHHHHHHHhcCCCCcEEEEccCchhh
Confidence 7899995432 13455555556789999999999865431 222223323221 34799999999984
No 106
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=97.29 E-value=0.00019 Score=62.39 Aligned_cols=167 Identities=21% Similarity=0.275 Sum_probs=95.4
Q ss_pred CCCeEEccccccccccch-------hhHHHHH----HhhhhhhcCCceEEccCCCCCCCCCC------ccccccccccc-
Q 019979 162 KYDVHLLPGDLSYADYMQ-------HRWDTFG----ELVQPLASARPWMVTQGNHEKESIPL------IMDAFQSYNAR- 223 (333)
Q Consensus 162 ~~d~vl~~GDl~~~~~~~-------~~~~~~~----~~~~~l~~~~P~~~~~GNHD~~~~~~------~~~~~~~~~~~- 223 (333)
.|--++..||++++++.+ .++..+. .-..++.-.+|+|.-.||||..-..- +......|...
T Consensus 126 ~plGlV~ggDitddgggq~~qprEg~ql~qf~~RYsq~vG~~h~H~PvYvGlgnhdldq~gpph~~DWyRrElrdyve~~ 205 (392)
T COG5555 126 CPLGLVEGGDITDDGGGQSFQPREGNQLKQFELRYSQDVGNIHMHYPVYVGLGNHDLDQKGPPHSLDWYRRELRDYVENY 205 (392)
T ss_pred CceeEEeecceeccCCCcccCccccchhhchHhhhccCCCCceeeeeeEeccCchhhcccCCCCchhHHHHHHHHHHHhh
Confidence 344577788999876541 1111111 11222333489999999999953211 01111122211
Q ss_pred ------cccCcCC-CCCCCCceEEEEeCCEEEEEEeccCCCCC--CHHHHHHHHHHhhcccCCCCCeEEEEeccccc--c
Q 019979 224 ------WKMPFEE-SGSNSNLYYSFDVAGAHLIMLGSYADYDE--YSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWY--N 292 (333)
Q Consensus 224 ------~~~p~~~-~~~~~~~~ys~~~g~v~fi~lds~~~~~~--~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~--~ 292 (333)
|..|... .-..-...||++.|+++.+-+-....-.. ....+-||+.+|.....+..+ ++++-|..+- +
T Consensus 206 Hr~~vf~Kppvp~atYd~l~d~ySwdwgglhlvh~hrf~Gd~~~ga~sslpwlk~dl~~~aadgrp-v~LfqhyGwdtfs 284 (392)
T COG5555 206 HRSDVFWKPPVPPATYDQLKDRYSWDWGGLHLVHYHRFIGDAEPGANSSLPWLKVDLIYSAADGRP-VYLFQHYGWDTFS 284 (392)
T ss_pred cCcCcccCCCCCcccccccchheeccccceeEEEEeeeccccCCCccccCcceeccceeeccCCCc-eeehhhhCcccee
Confidence 2222110 11123567999999998887776432111 134467999999887655555 8999997652 1
Q ss_pred CCCC--------CCCC------ChhHHHHHHHHHHhCCCcEEEecCccccc
Q 019979 293 SNEA--------HQGE------GDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (333)
Q Consensus 293 ~~~~--------~~~~------~~~~~~~l~~l~~~~~v~lvl~GH~H~y~ 329 (333)
+... ..+. ....+..+...++-|+|...+.||.|.+.
T Consensus 285 teawdpAsrT~Dd~Gsgaphww~a~er~all~~lqGYNvvg~fhGhkhd~~ 335 (392)
T COG5555 285 TEAWDPASRTLDDTGSGAPHWWPAPERGALLFFLQGYNVVGTFHGHKHDFN 335 (392)
T ss_pred ccccCchhcccccCCCCCCCCCCCCCcchHHHhhcCceeEEeccccccccc
Confidence 1110 0111 12357788888999999999999999653
No 107
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=97.27 E-value=0.0023 Score=45.68 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=47.1
Q ss_pred CCceEEEEecCCCcEEEEEEcCCCC----CCcEEEEeccCCCCCeeEEeeEEEEeeeeeecCeEEEEEeCCCCCCCEEEE
Q 019979 42 HPQQVHISLAGDSHMRVTWITDDES----SPSVVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLEHDTVYFY 117 (333)
Q Consensus 42 ~p~~v~l~~~~~~~~~v~W~t~~~~----~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~Y 117 (333)
+|..+++...+.+++.|.|...... ..-.|+|....+.... .... .......++|+||+|++.|.+
T Consensus 2 ~P~~l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~------~~~~----~~~~~~~~~i~~L~p~t~Y~~ 71 (85)
T PF00041_consen 2 APENLSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSDW------QEVT----VPGNETSYTITGLQPGTTYEF 71 (85)
T ss_dssp SSEEEEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSSSEE------EEEE----EETTSSEEEEESCCTTSEEEE
T ss_pred cCcCeEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEecccceee------eeee----eeeeeeeeeeccCCCCCEEEE
Confidence 5888888888999999999998411 2336677655443200 0111 112233788999999999999
Q ss_pred EeCc
Q 019979 118 RCGR 121 (333)
Q Consensus 118 ~v~~ 121 (333)
+|..
T Consensus 72 ~v~a 75 (85)
T PF00041_consen 72 RVRA 75 (85)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9864
No 108
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=97.15 E-value=0.00062 Score=60.39 Aligned_cols=65 Identities=22% Similarity=0.162 Sum_probs=42.9
Q ss_pred eEEEEeecCCCCC-hhhHHHHhh-cCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCC
Q 019979 138 TFAVAGDLGQTGW-TKSTLDHIG-QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEK 207 (333)
Q Consensus 138 ~f~~~gD~~~~~~-~~~~~~~i~-~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~ 207 (333)
+..++||+|.... ..++++.+. ....|-++++||+++.+... ....+.+..+. ..+..+.||||.
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~s---levL~~l~~l~--~~~~~VlGNHD~ 68 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGS---LEVLRYVKSLG--DAVRLVLGNHDL 68 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCH---HHHHHHHHhcC--CCeEEEEChhHH
Confidence 4678999986532 356777775 34679999999999876532 11223333332 235689999997
No 109
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=97.11 E-value=0.0069 Score=53.04 Aligned_cols=59 Identities=22% Similarity=0.222 Sum_probs=37.9
Q ss_pred HHHHHHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCccccc
Q 019979 265 RWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (333)
Q Consensus 265 ~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~ 329 (333)
+-+++.+++.++ +.+.+|++.|-..-.. .........+...+.+.++|+|+.||.|..+
T Consensus 162 ~~~~~~i~~lr~-~~D~vIv~~H~G~e~~-----~~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q 220 (239)
T cd07381 162 ERIAADIAEAKK-KADIVIVSLHWGVEYS-----YYPTPEQRELARALIDAGADLVIGHHPHVLQ 220 (239)
T ss_pred HHHHHHHHHHhh-cCCEEEEEecCcccCC-----CCCCHHHHHHHHHHHHCCCCEEEcCCCCcCC
Confidence 445556665544 4778999999654211 1111233455555666899999999999865
No 110
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=97.08 E-value=0.0015 Score=56.24 Aligned_cols=71 Identities=20% Similarity=0.172 Sum_probs=49.1
Q ss_pred eeEEEEeecCCCCCh--------------h---hHHH-HhhcCCCCeEEccccccccccc--hhhHHHHHHhhhhhhcCC
Q 019979 137 ITFAVAGDLGQTGWT--------------K---STLD-HIGQCKYDVHLLPGDLSYADYM--QHRWDTFGELVQPLASAR 196 (333)
Q Consensus 137 ~~f~~~gD~~~~~~~--------------~---~~~~-~i~~~~~d~vl~~GDl~~~~~~--~~~~~~~~~~~~~l~~~~ 196 (333)
-+.++++|+|.+... . ..++ -+...+|+-+|++||+-.+-+. ..+|+....+++.+...
T Consensus 20 ~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~- 98 (235)
T COG1407 20 GRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDER- 98 (235)
T ss_pred CcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhccC-
Confidence 467899999986321 1 1233 3458899999999999765443 45566655555555433
Q ss_pred ceEEccCCCCCC
Q 019979 197 PWMVTQGNHEKE 208 (333)
Q Consensus 197 P~~~~~GNHD~~ 208 (333)
-++.+.||||-.
T Consensus 99 evi~i~GNHD~~ 110 (235)
T COG1407 99 EVIIIRGNHDNG 110 (235)
T ss_pred cEEEEeccCCCc
Confidence 599999999985
No 111
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=97.07 E-value=0.009 Score=52.33 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=36.5
Q ss_pred HHHHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCcccccc
Q 019979 267 LKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYER 330 (333)
Q Consensus 267 L~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~R 330 (333)
+++.+++++. +..++|++.|-..-... .. ......+..-+.+.++|+|+.||.|..+.
T Consensus 162 i~~~i~~lr~-~~D~vIv~~H~G~e~~~----~p-~~~~~~~A~~l~~~G~DvIiG~H~H~~~~ 219 (239)
T smart00854 162 ILADIARARK-KADVVIVSLHWGVEYQY----EP-TDEQRELAHALIDAGADVVIGHHPHVLQP 219 (239)
T ss_pred HHHHHHHHhc-cCCEEEEEecCccccCC----CC-CHHHHHHHHHHHHcCCCEEEcCCCCcCCc
Confidence 4455555543 57889999997642211 11 12234455555557999999999998753
No 112
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=97.02 E-value=0.021 Score=49.08 Aligned_cols=171 Identities=15% Similarity=0.187 Sum_probs=94.3
Q ss_pred eeEEEEeecCCCCChhhHH----HHhh-cCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCCCC
Q 019979 137 ITFAVAGDLGQTGWTKSTL----DHIG-QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIP 211 (333)
Q Consensus 137 ~~f~~~gD~~~~~~~~~~~----~~i~-~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~~~ 211 (333)
+|++++||+= +...+.++ ..++ +.++||||..|-.+-. +..-.|+.+..+++. .+- +.+.|||=+....
T Consensus 1 mriLfiGDvv-Gk~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~-G~Git~k~y~~l~~~---G~d-viT~GNH~wd~~e 74 (266)
T COG1692 1 MRILFIGDVV-GKPGRKAVKEHLPQLKSKYKIDFVIVNGENAAG-GFGITEKIYKELLEA---GAD-VITLGNHTWDQKE 74 (266)
T ss_pred CeEEEEeccc-CcchHHHHHHHhHHHHHhhcCcEEEEcCccccC-CcCCCHHHHHHHHHh---CCC-EEecccccccchH
Confidence 4899999993 33333333 3333 6789999999999853 333345544444332 244 3489999885321
Q ss_pred CccccccccccccccCcCC-CCCCCCceEEEEeCCEEEEEEeccC--CCC-CCHHHHHHHHHHhhcccCCCCCeEEEEec
Q 019979 212 LIMDAFQSYNARWKMPFEE-SGSNSNLYYSFDVAGAHLIMLGSYA--DYD-EYSDQYRWLKDDLSKVDRKKTPWLLVLLH 287 (333)
Q Consensus 212 ~~~~~~~~~~~~~~~p~~~-~~~~~~~~ys~~~g~v~fi~lds~~--~~~-~~~~q~~WL~~~L~~~~~~~~~~~iv~~H 287 (333)
. ..+..-..++-.|.|- .+..+..|.-|...+..+.++|-.. ... .-..-..=+++.+.+.+. +++.+||-+|
T Consensus 75 i--~~~i~~~~~ilRP~N~p~~~~G~G~~~f~~ng~ki~V~Nl~Grv~m~~~~d~PF~~~d~l~~~~~~-~~~~iiVDFH 151 (266)
T COG1692 75 I--LDFIDNADRILRPANYPDGTPGKGSRIFKINGKKLAVINLMGRVFMPPALDNPFKAADKLLDEIKL-GTDLIIVDFH 151 (266)
T ss_pred H--HHHhhcccceeccCCCCCCCCcceEEEEEeCCcEEEEEEeeccccCccccCCHHHHHHHHHHhCcc-CCceEEEEcc
Confidence 1 1111111222234331 1234567788888887777776532 111 112334446667776654 5567899999
Q ss_pred cccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCcccc
Q 019979 288 VPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAY 328 (333)
Q Consensus 288 ~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y 328 (333)
.-..+. +.-.-++-+-.|.+|+.=|+|.-
T Consensus 152 AEtTSE------------K~a~g~yldGrvsavvGTHTHV~ 180 (266)
T COG1692 152 AETTSE------------KNAFGWYLDGRVSAVVGTHTHVP 180 (266)
T ss_pred ccchhh------------hhhhheEEcCeEEEEEeccCccc
Confidence 642210 01111233446889999999963
No 113
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=96.86 E-value=0.019 Score=49.91 Aligned_cols=167 Identities=16% Similarity=0.168 Sum_probs=79.1
Q ss_pred EEEeecCCCCChhh----HHHHhh-cCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCCCCCcc
Q 019979 140 AVAGDLGQTGWTKS----TLDHIG-QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIM 214 (333)
Q Consensus 140 ~~~gD~~~~~~~~~----~~~~i~-~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~~~~~~ 214 (333)
+++||.= +...++ .+..++ +.++||||..|..+-.+.- -....+.+++ . ..+-+ .+.|||=+......
T Consensus 1 LfiGDIv-G~~Gr~~v~~~Lp~L~~~~~~DfVIaNgENaa~G~G-it~~~~~~L~-~--~GvDv-iT~GNH~wdkkei~- 73 (253)
T PF13277_consen 1 LFIGDIV-GKPGRRAVKEHLPELKEEYGIDFVIANGENAAGGFG-ITPKIAEELF-K--AGVDV-ITMGNHIWDKKEIF- 73 (253)
T ss_dssp EEE-EBB-CHHHHHHHHHHHHHHGG--G-SEEEEE-TTTTTTSS---HHHHHHHH-H--HT-SE-EE--TTTTSSTTHH-
T ss_pred CeEEecC-CHHHHHHHHHHHHHHHhhcCCCEEEECCcccCCCCC-CCHHHHHHHH-h--cCCCE-EecCcccccCcHHH-
Confidence 4688882 222233 333443 6789999999999853321 1111111111 1 22454 48999998543210
Q ss_pred ccccccccccccCcCCC-CCCCCceEEEEeCCEEEEEEeccC--CCCCCHHHHHHHHHHhhcccCCCCCeEEEEeccccc
Q 019979 215 DAFQSYNARWKMPFEES-GSNSNLYYSFDVAGAHLIMLGSYA--DYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWY 291 (333)
Q Consensus 215 ~~~~~~~~~~~~p~~~~-~~~~~~~ys~~~g~v~fi~lds~~--~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~ 291 (333)
.+-.-..+.-.|.|-+ +..+..|..++.++.++.++|-.. .......-+..+++.|++.+ .+.+.+||=+|.=..
T Consensus 74 -~~i~~~~~ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~Gr~fm~~~~~PF~~~d~~l~~l~-~~~~~iiVDFHAEaT 151 (253)
T PF13277_consen 74 -DFIDKEPRILRPANYPPGTPGRGYRIFEKNGKKVAVINLMGRVFMPPIDCPFRAADRLLEELK-EETDIIIVDFHAEAT 151 (253)
T ss_dssp -HHHHH-SSEE--TTS-TT-SSBSEEEEEETTEEEEEEEEE--TTS---S-HHHHHHHHHHH------SEEEEEEE-S-H
T ss_pred -HHHhcCCCcEECCCCCCCCCcCcEEEEEECCEEEEEEECcccccCCCCCChHHHHHHHHHhcc-ccCCEEEEEeecCcH
Confidence 1100011222343322 344678999999998888888632 11111233444555555542 266778998886321
Q ss_pred cCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCccc
Q 019979 292 NSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHA 327 (333)
Q Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~ 327 (333)
.. +.-.-.+-+-+|.+|+.-|+|.
T Consensus 152 -----------SE-K~A~g~~lDGrvsaV~GTHTHV 175 (253)
T PF13277_consen 152 -----------SE-KQAMGWYLDGRVSAVVGTHTHV 175 (253)
T ss_dssp -----------HH-HHHHHHHHBTTBSEEEEESSSS
T ss_pred -----------HH-HHHHHHHhCCcEEEEEeCCCCc
Confidence 11 2334456677899999999996
No 114
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=96.80 E-value=0.0034 Score=59.44 Aligned_cols=45 Identities=24% Similarity=0.134 Sum_probs=33.8
Q ss_pred CCCeeEEEEeecCCCCCh-------------hhHHHHhhcCCCCeEEccccccccccc
Q 019979 134 QFPITFAVAGDLGQTGWT-------------KSTLDHIGQCKYDVHLLPGDLSYADYM 178 (333)
Q Consensus 134 ~~~~~f~~~gD~~~~~~~-------------~~~~~~i~~~~~d~vl~~GDl~~~~~~ 178 (333)
+..+||++..|.|.+... .+++.-+.+.+.|+||..||+...+..
T Consensus 11 entirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkP 68 (646)
T KOG2310|consen 11 ENTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKP 68 (646)
T ss_pred ccceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCCc
Confidence 567999999999876421 234444458899999999999976543
No 115
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=96.48 E-value=0.0045 Score=56.14 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=41.5
Q ss_pred eEEEEeecCCCCC-hhhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcC--CceEEccCCCCCC
Q 019979 138 TFAVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASA--RPWMVTQGNHEKE 208 (333)
Q Consensus 138 ~f~~~gD~~~~~~-~~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~--~P~~~~~GNHD~~ 208 (333)
+++++||+|.... ..++++.......+-++++||+++.+.. .-+. ...+..+.-. .-++.+.||||..
T Consensus 44 ~i~ViGDIHG~~~dL~~l~~~~g~~~~~~ylFLGDyVDRG~~--s~Ev-i~lL~~lki~~p~~v~lLRGNHE~~ 114 (305)
T cd07416 44 PVTVCGDIHGQFYDLLKLFEVGGSPANTRYLFLGDYVDRGYF--SIEC-VLYLWALKILYPKTLFLLRGNHECR 114 (305)
T ss_pred CEEEEEeCCCCHHHHHHHHHhcCCCCCceEEEECCccCCCCC--hHHH-HHHHHHHHhhcCCCEEEEeCCCcHH
Confidence 5789999985532 2334444444456889999999986553 1122 2222222222 3578899999984
No 116
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=96.43 E-value=0.046 Score=48.19 Aligned_cols=61 Identities=20% Similarity=0.234 Sum_probs=42.3
Q ss_pred HHHHHHHHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCccccc
Q 019979 263 QYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (333)
Q Consensus 263 q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~ 329 (333)
..+.+.+++++++ ++.+++||+.|-..-.. .......+.+...+-+.|+|+|+.+|.|..+
T Consensus 169 ~~~~i~~~i~~~r-~~~D~vIv~~HwG~e~~-----~~p~~~q~~~a~~lidaGaDiIiG~HpHv~q 229 (250)
T PF09587_consen 169 GIERIKEDIREAR-KKADVVIVSLHWGIEYE-----NYPTPEQRELARALIDAGADIIIGHHPHVIQ 229 (250)
T ss_pred hHHHHHHHHHHHh-cCCCEEEEEeccCCCCC-----CCCCHHHHHHHHHHHHcCCCEEEeCCCCccc
Confidence 3477888888876 37789999999743211 1112244556556666899999999999865
No 117
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=96.40 E-value=0.0054 Score=54.73 Aligned_cols=68 Identities=19% Similarity=0.129 Sum_probs=42.5
Q ss_pred eEEEEeecCCCCC-hhhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhh--cCCceEEccCCCCCC
Q 019979 138 TFAVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLA--SARPWMVTQGNHEKE 208 (333)
Q Consensus 138 ~f~~~gD~~~~~~-~~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~--~~~P~~~~~GNHD~~ 208 (333)
+++++||+|.... ..++++.+.....+-++++||+++.+... -+. ...+..+. ....++.+.||||..
T Consensus 29 ~i~vvGDiHG~~~~l~~ll~~~~~~~~~~~vfLGD~VDrG~~s--~e~-l~~l~~lk~~~p~~v~llrGNHE~~ 99 (271)
T smart00156 29 PVTVCGDIHGQFDDLLRLFDLNGPPPDTNYVFLGDYVDRGPFS--IEV-ILLLFALKILYPNRVVLLRGNHESR 99 (271)
T ss_pred CEEEEEeCcCCHHHHHHHHHHcCCCCCceEEEeCCccCCCCCh--HHH-HHHHHHHHhcCCCCEEEEeccccHH
Confidence 5789999985532 23455555456678899999999866531 111 12222221 123578899999984
No 118
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=96.17 E-value=0.0088 Score=54.47 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=39.7
Q ss_pred eEEEEeecCCCCC-hhhHHHHhhcC-CCCeEEccccccccccchhhHHHHHHhhhhhh--cCCceEEccCCCCCC
Q 019979 138 TFAVAGDLGQTGW-TKSTLDHIGQC-KYDVHLLPGDLSYADYMQHRWDTFGELVQPLA--SARPWMVTQGNHEKE 208 (333)
Q Consensus 138 ~f~~~gD~~~~~~-~~~~~~~i~~~-~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~--~~~P~~~~~GNHD~~ 208 (333)
++.++||+|.... ..++++..... .-+-+|++||+++.+.. .-+.+ .++-.+. ..--++.+.||||..
T Consensus 52 ~~~vvGDiHG~~~dL~~il~~~g~~~~~~~~lFLGDyVDRG~~--s~Evl-~ll~~lk~~~p~~v~llRGNHE~~ 123 (321)
T cd07420 52 QVTICGDLHGKLDDLFLIFYKNGLPSPENPYVFNGDFVDRGKR--SIEIL-IILFAFFLVYPNEVHLNRGNHEDH 123 (321)
T ss_pred CeEEEEeCCCCHHHHHHHHHHcCCCCccceEEEeccccCCCCC--cHHHH-HHHHHHhhcCCCcEEEecCchhhh
Confidence 6789999986532 12333333222 23679999999987653 22222 1222221 123488899999985
No 119
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=96.08 E-value=0.0082 Score=53.90 Aligned_cols=68 Identities=22% Similarity=0.206 Sum_probs=41.2
Q ss_pred eEEEEeecCCCCC-hhhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhh--cCCceEEccCCCCCC
Q 019979 138 TFAVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLA--SARPWMVTQGNHEKE 208 (333)
Q Consensus 138 ~f~~~gD~~~~~~-~~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~--~~~P~~~~~GNHD~~ 208 (333)
.+.++||+|..-. ..++++.......+-+|++||+++.+.... +. ...+..+. ....++.+.||||..
T Consensus 43 ~i~vvGDIHG~~~dL~~ll~~~~~~~~~~~lfLGDyVDRG~~s~--ev-l~ll~~lk~~~p~~v~llrGNHE~~ 113 (285)
T cd07415 43 PVTVCGDIHGQFYDLLELFRVGGDPPDTNYLFLGDYVDRGYYSV--ET-FLLLLALKVRYPDRITLLRGNHESR 113 (285)
T ss_pred CEEEEEeCCCCHHHHHHHHHHcCCCCCCeEEEEeEECCCCcCHH--HH-HHHHHHHhhcCCCcEEEEecccchH
Confidence 4789999985432 233444444445578999999998665311 11 12222222 124589999999974
No 120
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=96.07 E-value=0.008 Score=54.20 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=41.5
Q ss_pred eEEEEeecCCCCC-hhhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhh--cCCceEEccCCCCCC
Q 019979 138 TFAVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLA--SARPWMVTQGNHEKE 208 (333)
Q Consensus 138 ~f~~~gD~~~~~~-~~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~--~~~P~~~~~GNHD~~ 208 (333)
.++++||+|.... ..++++.......+-+|++||+++.+... .+.+ ..+..+. ....++.+.||||..
T Consensus 51 ~i~viGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s--~e~i-~ll~~lk~~~p~~i~llrGNHE~~ 121 (293)
T cd07414 51 PLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQS--LETI-CLLLAYKIKYPENFFLLRGNHECA 121 (293)
T ss_pred ceEEEEecCCCHHHHHHHHHhcCCCCcceEEEEeeEecCCCCc--HHHH-HHHHHhhhhCCCcEEEEecccchh
Confidence 4789999985432 23455555445567899999999866532 1221 1111221 113478899999984
No 121
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=96.01 E-value=0.011 Score=54.76 Aligned_cols=69 Identities=20% Similarity=0.199 Sum_probs=40.2
Q ss_pred eeEEEEeecCCCCCh-hhHHHHhhcCCC-CeEEccccccccccchhhHHHHHHhhhhhh--cCCceEEccCCCCCC
Q 019979 137 ITFAVAGDLGQTGWT-KSTLDHIGQCKY-DVHLLPGDLSYADYMQHRWDTFGELVQPLA--SARPWMVTQGNHEKE 208 (333)
Q Consensus 137 ~~f~~~gD~~~~~~~-~~~~~~i~~~~~-d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~--~~~P~~~~~GNHD~~ 208 (333)
-++.++||+|..... ..+++.+..... +.+|++||+++.+.. .-+.+ ..+..+. ...-++.+.||||..
T Consensus 66 ~~i~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFLGDyVDRGp~--SlEvl-~lL~~lki~~p~~v~lLRGNHE~~ 138 (377)
T cd07418 66 CEVVVVGDVHGQLHDVLFLLEDAGFPDQNRFYVFNGDYVDRGAW--GLETF-LLLLSWKVLLPDRVYLLRGNHESK 138 (377)
T ss_pred CCEEEEEecCCCHHHHHHHHHHhCCCCCCceEEEeccccCCCCC--hHHHH-HHHHHHhhccCCeEEEEeeecccc
Confidence 468999999865321 233443322233 459999999986653 11222 2222222 123488899999984
No 122
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=95.94 E-value=0.011 Score=53.38 Aligned_cols=67 Identities=21% Similarity=0.252 Sum_probs=40.1
Q ss_pred EEEEeecCCCCC-hhhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhc--CCceEEccCCCCCC
Q 019979 139 FAVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLAS--ARPWMVTQGNHEKE 208 (333)
Q Consensus 139 f~~~gD~~~~~~-~~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~--~~P~~~~~GNHD~~ 208 (333)
+.++||+|.... ..++++.+.....+-++++||+++.+... -+. ...+-.+.- ..-++.+.||||..
T Consensus 45 i~vvGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s--~ev-l~ll~~lk~~~p~~v~llrGNHE~~ 114 (303)
T PTZ00239 45 VNVCGDIHGQFYDLQALFKEGGDIPNANYIFIGDFVDRGYNS--VET-MEYLLCLKVKYPGNITLLRGNHESR 114 (303)
T ss_pred EEEEEeCCCCHHHHHHHHHhcCCCCCceEEEeeeEcCCCCCH--HHH-HHHHHHhhhcCCCcEEEEecccchH
Confidence 788999985432 23344444344557799999999866531 111 111222211 13478899999974
No 123
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=95.85 E-value=0.034 Score=55.47 Aligned_cols=95 Identities=18% Similarity=0.248 Sum_probs=63.3
Q ss_pred CCCccccCCCCCCCCCceEEEEecCCCcEEEEEEcCCCCCCc----EEEEeccCCCCCeeEEeeEEEEeeeeeecCeEEE
Q 019979 28 RRTLEFPWDPKPSSHPQQVHISLAGDSHMRVTWITDDESSPS----VVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHH 103 (333)
Q Consensus 28 ~~~~~~~~~~~~~~~p~~v~l~~~~~~~~~v~W~t~~~~~~~----~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (333)
..+|+.+.+++.+.....|++.-.+.++++++|.-.+.+... .|+|-++..+. .+|.. ......+
T Consensus 431 ~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~ildYEvky~ek~~~e--------~~~~~---~~t~~~~ 499 (996)
T KOG0196|consen 431 FASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGVILDYEVKYYEKDEDE--------RSYST---LKTKTTT 499 (996)
T ss_pred ceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCCcceeEEEEEeeccccc--------cceeE---Eecccce
Confidence 345666776666666666777767799999999988665443 34454443211 11211 1123447
Q ss_pred EEeCCCCCCCEEEEEeCc--------CCCeeEEECCCC
Q 019979 104 TVIGPLEHDTVYFYRCGR--------QGPEFEFKTPPA 133 (333)
Q Consensus 104 ~~l~~L~p~t~Y~Y~v~~--------~s~~~~F~t~p~ 133 (333)
|+|+||+|||.|-+||.. -|....|.|.+.
T Consensus 500 ~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 500 ATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred EEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence 899999999999999964 267788988764
No 124
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=95.82 E-value=0.012 Score=53.57 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=41.1
Q ss_pred eEEEEeecCCCC-ChhhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhc--CCceEEccCCCCCC
Q 019979 138 TFAVAGDLGQTG-WTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLAS--ARPWMVTQGNHEKE 208 (333)
Q Consensus 138 ~f~~~gD~~~~~-~~~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~--~~P~~~~~GNHD~~ 208 (333)
.++++||+|..- ...++++.......+-+|++||+++.+.. ..+.+ ..+..+.- .-.++.+.||||..
T Consensus 60 ~i~vvGDIHG~~~dL~~l~~~~g~~~~~~ylfLGDyVDRG~~--s~evl-~ll~~lki~~p~~v~llRGNHE~~ 130 (320)
T PTZ00480 60 PLKICGDVHGQYFDLLRLFEYGGYPPESNYLFLGDYVDRGKQ--SLETI-CLLLAYKIKYPENFFLLRGNHECA 130 (320)
T ss_pred CeEEEeecccCHHHHHHHHHhcCCCCcceEEEeceecCCCCC--cHHHH-HHHHHhcccCCCceEEEecccchh
Confidence 488999998542 22334554444455678999999986643 12222 22222211 23578899999984
No 125
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=95.80 E-value=0.048 Score=52.65 Aligned_cols=56 Identities=18% Similarity=0.322 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHH-HHHHHHHhC-CCcE-EEecCcccc
Q 019979 261 SDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMA-IMEPLLYAA-SVDL-VLAGHVHAY 328 (333)
Q Consensus 261 ~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~-~l~~l~~~~-~v~l-vl~GH~H~y 328 (333)
-.|.+|-.+.++.. +.+-+|++.|.|.-... .++ .+.++...+ ++++ ||.||.|..
T Consensus 211 i~~~~~~~~m~~~~---~idlii~lgH~~~~~~~---------e~~~~~~~ir~~~p~t~IqviGGHshir 269 (602)
T KOG4419|consen 211 ITQSEWEQDMVNTT---DIDLIIALGHSPVRDDD---------EWKSLHAEIRKVHPNTPIQVIGGHSHIR 269 (602)
T ss_pred HhccchHHHHhhcc---CccEEEEecccccccch---------hhhhHHHHHhhhCCCCceEEECchhhhh
Confidence 45667877777763 56668999999864321 122 344444444 6777 999999964
No 126
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=95.66 E-value=0.012 Score=52.94 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=40.5
Q ss_pred EEEEeecCCCCC-hhhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhh-hhhhcCCceEEccCCCCCC
Q 019979 139 FAVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELV-QPLASARPWMVTQGNHEKE 208 (333)
Q Consensus 139 f~~~gD~~~~~~-~~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~-~~l~~~~P~~~~~GNHD~~ 208 (333)
+.++||+|.... ..++++.+.....+-++++||+++.+.. ..+.+.-.+ -.+.....++.+.||||..
T Consensus 54 ~~ViGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~--s~evl~ll~~lk~~~p~~v~llrGNHE~~ 123 (294)
T PTZ00244 54 VRVCGDTHGQYYDLLRIFEKCGFPPYSNYLFLGDYVDRGKH--SVETITLQFCYKIVYPENFFLLRGNHECA 123 (294)
T ss_pred ceeeccCCCCHHHHHHHHHHcCCCCcccEEEeeeEecCCCC--HHHHHHHHHHHhhccCCeEEEEecccchH
Confidence 678999985532 2345555544455578899999986653 112211111 1122234688999999974
No 127
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=95.63 E-value=0.3 Score=42.89 Aligned_cols=71 Identities=20% Similarity=0.161 Sum_probs=44.1
Q ss_pred CCCCeeEEEEeecCCCCChhhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCCC
Q 019979 133 AQFPITFAVAGDLGQTGWTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESI 210 (333)
Q Consensus 133 ~~~~~~f~~~gD~~~~~~~~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~~ 210 (333)
...-.||+.++|.|...... +. -..-|+.+++||.+..+. ..+-..|.+.+..+--. =-+++.||||..-.
T Consensus 58 ~~~~~r~VcisdtH~~~~~i---~~--~p~gDvlihagdfT~~g~-~~ev~~fn~~~gslph~-yKIVIaGNHELtFd 128 (305)
T KOG3947|consen 58 GPGYARFVCISDTHELTFDI---ND--IPDGDVLIHAGDFTNLGL-PEEVIKFNEWLGSLPHE-YKIVIAGNHELTFD 128 (305)
T ss_pred CCCceEEEEecCcccccCcc---cc--CCCCceEEeccCCccccC-HHHHHhhhHHhccCcce-eeEEEeeccceeec
Confidence 36779999999998654321 12 366799999999996443 22223344433333221 23568999999643
No 128
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=94.74 E-value=0.038 Score=50.37 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=39.2
Q ss_pred eeEEEEeecCCCCC-hhhHHHHhhcC-CCCeEEccccccccccchhhHHHHHHhhhhh--hcCCceEEccCCCCCC
Q 019979 137 ITFAVAGDLGQTGW-TKSTLDHIGQC-KYDVHLLPGDLSYADYMQHRWDTFGELVQPL--ASARPWMVTQGNHEKE 208 (333)
Q Consensus 137 ~~f~~~gD~~~~~~-~~~~~~~i~~~-~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l--~~~~P~~~~~GNHD~~ 208 (333)
-++.++||+|.... ..++++..... .-|-++++||+++.+.. .-+.+. .+-.+ ....-++.+.||||..
T Consensus 60 ~~~~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFLGDyVDRG~~--S~Evl~-ll~~lki~~p~~v~lLRGNHE~~ 132 (316)
T cd07417 60 EKITVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDFVDRGSF--SVEVIL-TLFAFKLLYPNHFHLNRGNHETD 132 (316)
T ss_pred ceeEEeecccCCHHHHHHHHHhcCCCCccCeEEEEeeEecCCCC--hHHHHH-HHHHhhhccCCceEEEeeccchH
Confidence 46889999985432 22334333221 23579999999987653 122221 11122 1123477899999973
No 129
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=94.70 E-value=0.05 Score=49.56 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=19.2
Q ss_pred HHHHHHHHHhCCCcEEEecCc
Q 019979 305 MAIMEPLLYAASVDLVLAGHV 325 (333)
Q Consensus 305 ~~~l~~l~~~~~v~lvl~GH~ 325 (333)
.+++..+++++++++++=||.
T Consensus 242 ~~~~~~Fl~~n~l~~iiRgHe 262 (311)
T cd07419 242 PDRVHRFLEENDLQMIIRAHE 262 (311)
T ss_pred HHHHHHHHHHCCCeEEEEech
Confidence 478889999999999999997
No 130
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=94.60 E-value=0.043 Score=46.85 Aligned_cols=113 Identities=12% Similarity=0.130 Sum_probs=54.5
Q ss_pred EEEEeecCCCCCh------hhHHHHhh-cCCCCeEEccccccccccch---------hhH-HHH----HHhhhhhhcCCc
Q 019979 139 FAVAGDLGQTGWT------KSTLDHIG-QCKYDVHLLPGDLSYADYMQ---------HRW-DTF----GELVQPLASARP 197 (333)
Q Consensus 139 f~~~gD~~~~~~~------~~~~~~i~-~~~~d~vl~~GDl~~~~~~~---------~~~-~~~----~~~~~~l~~~~P 197 (333)
|++++|.+.+... .+.++.+. ..+|+.+|++|++++..... ... ..+ ...+..+...++
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPSTQ 80 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCSE
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccccE
Confidence 5788998776332 23344445 77899999999999753321 011 111 223344555689
Q ss_pred eEEccCCCCCCCCCCcc-cccccc-ccccccCcCCCCCCCCceEEEEeCCEEEEEEec
Q 019979 198 WMVTQGNHEKESIPLIM-DAFQSY-NARWKMPFEESGSNSNLYYSFDVAGAHLIMLGS 253 (333)
Q Consensus 198 ~~~~~GNHD~~~~~~~~-~~~~~~-~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds 253 (333)
++.+||+||........ ..+... ......- ..-..-..-+.+.+++..|.+...
T Consensus 81 vvlvPg~~D~~~~~~lPq~pl~~~~~~~~~~~--~~~~~~sNP~~~~i~~~~i~~~s~ 136 (209)
T PF04042_consen 81 VVLVPGPNDPTSSPVLPQPPLHSKLFPKLKKY--SNIHFVSNPCRISINGQEIGVTSG 136 (209)
T ss_dssp EEEE--TTCTT-S-SCSB----TTTTCHHCTT--TTEEE--CSEEEEETTEEEEE-SS
T ss_pred EEEeCCCccccccCCCCCCCCCHHHHhhhhhc--CceEEeCCCeEEEEeCCcEEEECC
Confidence 99999999996542211 111100 0000000 000001234668889999988775
No 131
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=93.82 E-value=0.58 Score=31.66 Aligned_cols=71 Identities=11% Similarity=0.192 Sum_probs=40.0
Q ss_pred CceEEEEecCCCcEEEEEEcCCCCC--CcEEEEeccCCCCCeeEEeeEEEEeeeeeecCeEEEEEeCCCCCCCEEEEEeC
Q 019979 43 PQQVHISLAGDSHMRVTWITDDESS--PSVVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLEHDTVYFYRCG 120 (333)
Q Consensus 43 p~~v~l~~~~~~~~~v~W~t~~~~~--~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~Y~v~ 120 (333)
|..+.+.....+++.|+|....... .-.++|........ ....... .....+...|.+|+|++.|.++|.
T Consensus 4 p~~~~~~~~~~~~~~v~W~~~~~~~~~~y~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~i~~L~~~~~Y~v~v~ 75 (83)
T smart00060 4 PSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEG----SSWKEVN----VTPSSTSYTLTGLKPGTEYEFRVR 75 (83)
T ss_pred CCcEEEEEEeCCEEEEEECCCCCCCCCccEEEEEEEEecCC----CccEEEE----ecCCccEEEEeCcCCCCEEEEEEE
Confidence 3336566555669999998542221 23566654432211 0000000 111156788999999999999985
Q ss_pred c
Q 019979 121 R 121 (333)
Q Consensus 121 ~ 121 (333)
.
T Consensus 76 a 76 (83)
T smart00060 76 A 76 (83)
T ss_pred E
Confidence 3
No 132
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=92.98 E-value=0.94 Score=31.57 Aligned_cols=70 Identities=17% Similarity=0.303 Sum_probs=39.6
Q ss_pred CCceEEEEecCCCcEEEEEEcCCCC----CCcEEEEeccCCCCCeeEEeeEEEEeeeeeecCeEEEEEeCCCCCCCEEEE
Q 019979 42 HPQQVHISLAGDSHMRVTWITDDES----SPSVVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLEHDTVYFY 117 (333)
Q Consensus 42 ~p~~v~l~~~~~~~~~v~W~t~~~~----~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~Y 117 (333)
.|..+.+......++.|.|...... ..-.|+|......... ... ........+.+.+|.|++.|.+
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~-------~~~---~~~~~~~~~~i~~l~p~~~Y~~ 72 (93)
T cd00063 3 PPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWK-------EVE---VTPGSETSYTLTGLKPGTEYEF 72 (93)
T ss_pred CCCCcEEEEecCCEEEEEECCCCCCCCcceeEEEEEeeCCCCCCE-------Eee---ccCCcccEEEEccccCCCEEEE
Confidence 3444555555578999999876432 1123344433211000 000 0112455678899999999999
Q ss_pred EeCc
Q 019979 118 RCGR 121 (333)
Q Consensus 118 ~v~~ 121 (333)
+|..
T Consensus 73 ~v~a 76 (93)
T cd00063 73 RVRA 76 (93)
T ss_pred EEEE
Confidence 9853
No 133
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=92.26 E-value=0.35 Score=50.60 Aligned_cols=82 Identities=20% Similarity=0.349 Sum_probs=51.8
Q ss_pred CCCCCCceEEEEecCCCcEEEEEEcCCCCCC--c----EEEEeccCCCCC---eeEEeeEEEEeeeeeecCeEEEEEeCC
Q 019979 38 KPSSHPQQVHISLAGDSHMRVTWITDDESSP--S----VVEYGTSPGGYN---CGAEGESTSYRYLFYRSGKIHHTVIGP 108 (333)
Q Consensus 38 ~~~~~p~~v~l~~~~~~~~~v~W~t~~~~~~--~----~v~y~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~ 108 (333)
.++..|+.|.|-...+++++|.|........ . .++|+..+.... ..+.+ ....-.+++
T Consensus 614 ~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~-------------n~~~~l~~~ 680 (1381)
T KOG4221|consen 614 VPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVVKG-------------NTTQYLFNG 680 (1381)
T ss_pred CCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeeccc-------------chhhhHhhc
Confidence 5556666699998889999999998754321 1 344554332111 11111 112224568
Q ss_pred CCCCCEEEEEeCc--------CCCeeEEECCC
Q 019979 109 LEHDTVYFYRCGR--------QGPEFEFKTPP 132 (333)
Q Consensus 109 L~p~t~Y~Y~v~~--------~s~~~~F~t~p 132 (333)
|+|+|.|.+||.. .|++..+.|+-
T Consensus 681 Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~ 712 (1381)
T KOG4221|consen 681 LEPNTQYRVRISAMTVNGTGPASEWVSAETPE 712 (1381)
T ss_pred CCCCceEEEEEEEeccCCCCCcccceeccCcc
Confidence 9999999999853 26788888864
No 134
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=91.84 E-value=0.63 Score=48.42 Aligned_cols=75 Identities=15% Similarity=0.156 Sum_probs=52.6
Q ss_pred CCCCCCceEEEEecCCCcEEEEEEcCC----CCCCcEEEEeccCCCCCeeEEeeEEEEeeeeeecCeEEEEEeCCCCCCC
Q 019979 38 KPSSHPQQVHISLAGDSHMRVTWITDD----ESSPSVVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLEHDT 113 (333)
Q Consensus 38 ~~~~~p~~v~l~~~~~~~~~v~W~t~~----~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t 113 (333)
.+..+|..+.+.-.+.+++.|.|.... ....-.|+|....+..... ... ...+..-.++|+||+|+|
T Consensus 818 ~P~~ap~~~~~~~~s~s~~~v~W~~~~~~nG~l~gY~v~Y~~~~~~~~~~-----~~~----~i~~~~~~~~ltgL~~~T 888 (1051)
T KOG3513|consen 818 EPPVAPTKLSAKPLSSSEVNLSWKPPLWDNGKLTGYEVKYWKINEKEGSL-----SRV----QIAGNRTSWRLTGLEPNT 888 (1051)
T ss_pred CCCCCCccceeecccCceEEEEecCcCccCCccceeEEEEEEcCCCcccc-----cce----eecCCcceEeeeCCCCCc
Confidence 567788888888778999999995432 2345689998877653111 110 122455678999999999
Q ss_pred EEEEEeCc
Q 019979 114 VYFYRCGR 121 (333)
Q Consensus 114 ~Y~Y~v~~ 121 (333)
.|++.|..
T Consensus 889 ~Y~~~vrA 896 (1051)
T KOG3513|consen 889 KYRFYVRA 896 (1051)
T ss_pred eEEEEEEE
Confidence 99999863
No 135
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=86.60 E-value=0.35 Score=26.03 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=10.6
Q ss_pred CcchhhH-HHHHHHHhcCC
Q 019979 1 MELKFVL-TAFVFISATVT 18 (333)
Q Consensus 1 ~~~~~~~-~~~~~~~~~~~ 18 (333)
|.||+++ ++.++.|++|+
T Consensus 6 mmKkil~~l~a~~~LagCs 24 (25)
T PF08139_consen 6 MMKKILFPLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 3455444 44455588887
No 136
>PHA03376 BARF1; Provisional
Probab=84.73 E-value=6 Score=33.04 Aligned_cols=105 Identities=9% Similarity=-0.016 Sum_probs=52.3
Q ss_pred CcchhhHHHHHHHHhcCCCCccccCCCCCCccccCCCCCCCCCceEEEEecCCCcEEEEEEcCCCCCCcEEEEeccCCCC
Q 019979 1 MELKFVLTAFVFISATVTTAEYIRPQPRRTLEFPWDPKPSSHPQQVHISLAGDSHMRVTWITDDESSPSVVEYGTSPGGY 80 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~l~~~~~~~~~v~W~t~~~~~~~~v~y~~~~~~~ 80 (333)
|++.|+.+|++..+. |++-+..-.=.+ .+.+|| +..- ...+.+|.|.|+-.......++.|....+..
T Consensus 1 ~~~~~~~Ll~La~l~-~sg~pVta~VGE-da~LsC---------~lnp-~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv 68 (221)
T PHA03376 1 MARFIAQLLLLASCV-AAGQAVTAFLGE-RVTLTS---------YWRR-VSLGPEIEVSWFKLGPGEEQVLIGRMHHDVI 68 (221)
T ss_pred ChhHHHHHHHHHHHh-ccCcchhheeCC-cEEEEe---------cccC-ccCCCceEEEEEecCCCCCCEEEEEcCCeee
Confidence 788888777766666 443111111112 233444 2110 1125889999999853245667776655431
Q ss_pred CeeEEeeEEEEeeeeeecCeEEEEEeCCCCCCCEEEEEeC
Q 019979 81 NCGAEGESTSYRYLFYRSGKIHHTVIGPLEHDTVYFYRCG 120 (333)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~Y~v~ 120 (333)
.... +-..++.. ..+.-.....|.++.+.-.=.|++.
T Consensus 69 ~~Qm--EyRGrtD~-~~~~gnvsLvI~~l~lSDdGtY~C~ 105 (221)
T PHA03376 69 FIEW--PFRGFFDI-HRSANTFFLVVTAANISHDGNYLCR 105 (221)
T ss_pred eeee--ccccEEEE-EecCCeEEEEEEeeeecCCceEEEE
Confidence 1111 11111111 1223455677778877666666654
No 137
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=84.52 E-value=1.8 Score=37.49 Aligned_cols=65 Identities=23% Similarity=0.237 Sum_probs=37.6
Q ss_pred EEEeecCCCCChhhHHHHhh--cCCC-CeEEccccccccccchhhHHHHHHhh-hhhhcCCceEEccCCCCCC
Q 019979 140 AVAGDLGQTGWTKSTLDHIG--QCKY-DVHLLPGDLSYADYMQHRWDTFGELV-QPLASARPWMVTQGNHEKE 208 (333)
Q Consensus 140 ~~~gD~~~~~~~~~~~~~i~--~~~~-d~vl~~GDl~~~~~~~~~~~~~~~~~-~~l~~~~P~~~~~GNHD~~ 208 (333)
.+.||+|.. ..++++-.. ..-| .=-|++||+++.+-. .-+.+.-++ -++.-.--+..+.||||..
T Consensus 46 tvcGDIHGQ--f~Dllelf~igG~~~~t~YLFLGDyVDRG~~--SvEt~lLLl~lK~rYP~ritLiRGNHEsR 114 (303)
T KOG0372|consen 46 TVCGDIHGQ--FYDLLELFRIGGDVPETNYLFLGDYVDRGYY--SVETFLLLLALKVRYPDRITLIRGNHESR 114 (303)
T ss_pred EEeecccch--HHHHHHHHHhCCCCCCCceEeecchhccccc--hHHHHHHHHHHhhcCcceeEEeeccchhh
Confidence 689999854 344554443 2222 347899999986542 223333221 1222224577799999985
No 138
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=83.25 E-value=6.6 Score=31.55 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=11.9
Q ss_pred EeCCCCCCCEEEEE
Q 019979 105 VIGPLEHDTVYFYR 118 (333)
Q Consensus 105 ~l~~L~p~t~Y~Y~ 118 (333)
.+++|.|||+|+.+
T Consensus 105 qVtNL~pGTkY~is 118 (184)
T PF07353_consen 105 QVTNLQPGTKYYIS 118 (184)
T ss_pred EeeccCCCcEEEEE
Confidence 46899999999766
No 139
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=82.05 E-value=9.6 Score=34.16 Aligned_cols=83 Identities=8% Similarity=-0.049 Sum_probs=48.8
Q ss_pred eEEECCCCCCCeeEEEEeecCCCCCh-----hhHHHHhh-----cCCCCeEEccccccccc-----cchhhHHHHHHhhh
Q 019979 126 FEFKTPPAQFPITFAVAGDLGQTGWT-----KSTLDHIG-----QCKYDVHLLPGDLSYAD-----YMQHRWDTFGELVQ 190 (333)
Q Consensus 126 ~~F~t~p~~~~~~f~~~gD~~~~~~~-----~~~~~~i~-----~~~~d~vl~~GDl~~~~-----~~~~~~~~~~~~~~ 190 (333)
|..--..++...+|+++||++.+... +.+++... ...|-.+|++|+++... .....+.+.++.+.
T Consensus 17 ~~~~~~~~~~~~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La 96 (291)
T PTZ00235 17 YEIIVRKNDKRHNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLS 96 (291)
T ss_pred EEEEEecCCCceEEEEEEeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHH
Confidence 34333344677899999999877531 22333332 12388999999997542 11122222222222
Q ss_pred --------hhhcCCceEEccCCCCCC
Q 019979 191 --------PLASARPWMVTQGNHEKE 208 (333)
Q Consensus 191 --------~l~~~~P~~~~~GNHD~~ 208 (333)
.+....-++.|||-.|-.
T Consensus 97 ~llls~fp~L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 97 VMLISKFKLILEHCYLIFIPGINDPC 122 (291)
T ss_pred HHHHHhChHHHhcCeEEEECCCCCCC
Confidence 234557799999999974
No 140
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=81.73 E-value=2 Score=37.46 Aligned_cols=65 Identities=23% Similarity=0.276 Sum_probs=37.9
Q ss_pred EEEEeecCCCCChhhHHHHh--hcCCCCe-EEccccccccccchhhHHHHHHhhhhh--hcCCceEEccCCCCCC
Q 019979 139 FAVAGDLGQTGWTKSTLDHI--GQCKYDV-HLLPGDLSYADYMQHRWDTFGELVQPL--ASARPWMVTQGNHEKE 208 (333)
Q Consensus 139 f~~~gD~~~~~~~~~~~~~i--~~~~~d~-vl~~GDl~~~~~~~~~~~~~~~~~~~l--~~~~P~~~~~GNHD~~ 208 (333)
..+.||.|..- ...++.+ ....||. .++.||.++.+....+- -.++-.+ .-.--+-.++||||..
T Consensus 62 vtvcGDvHGqf--~dl~ELfkiGG~~pdtnylfmGDyvdrGy~Svet---VS~lva~Kvry~~rvtilrGNHEsr 131 (319)
T KOG0371|consen 62 VTVCGDVHGQF--HDLIELFKIGGLAPDTNYLFMGDYVDRGYYSVET---VSLLVALKVRYPDRVTILRGNHESR 131 (319)
T ss_pred eEEecCcchhH--HHHHHHHHccCCCCCcceeeeeeecccccchHHH---HHHHHHhhccccceeEEecCchHHH
Confidence 46789998543 3444444 3556665 78899999865532211 1122112 1123466799999984
No 141
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=81.57 E-value=1.6 Score=40.13 Aligned_cols=68 Identities=19% Similarity=0.160 Sum_probs=39.8
Q ss_pred eEEEEeecCCCCChhhHHHHhhc---CCCC-eEEccccccccccchhhHHHH--HHhhhhhhcCCceEEccCCCCCCCC
Q 019979 138 TFAVAGDLGQTGWTKSTLDHIGQ---CKYD-VHLLPGDLSYADYMQHRWDTF--GELVQPLASARPWMVTQGNHEKESI 210 (333)
Q Consensus 138 ~f~~~gD~~~~~~~~~~~~~i~~---~~~d-~vl~~GDl~~~~~~~~~~~~~--~~~~~~l~~~~P~~~~~GNHD~~~~ 210 (333)
-+.++||+|... ..+++-+.. ..|+ -.+++||+++.+... .+.+ .-.+ .+.-.--++...||||....
T Consensus 60 PV~i~GDiHGq~--~DLlrlf~~~g~~pp~~~ylFLGDYVDRG~~s--lE~i~LL~a~-Ki~yp~~~~lLRGNHE~~~i 133 (331)
T KOG0374|consen 60 PVKIVGDIHGQF--GDLLRLFDLLGSFPPDQNYVFLGDYVDRGKQS--LETICLLFAL-KIKYPENVFLLRGNHECASI 133 (331)
T ss_pred CEEEEccCcCCH--HHHHHHHHhcCCCCCcccEEEecccccCCccc--eEEeehhhhh-hhhCCceEEEeccccccccc
Confidence 467899998653 244443332 2354 489999999876531 1111 1111 11122568999999999643
No 142
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.67 E-value=3.8 Score=38.75 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=44.1
Q ss_pred CeeEEEEeecCCCCChhhHHHHhh-----cCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCC
Q 019979 136 PITFAVAGDLGQTGWTKSTLDHIG-----QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNH 205 (333)
Q Consensus 136 ~~~f~~~gD~~~~~~~~~~~~~i~-----~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNH 205 (333)
+.+|+++||.. +....+++.|. ....|++|.+|++...+....+|..+.+-...+- +|.|+.-+|-
T Consensus 5 ~~kILv~Gd~~--Gr~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e~~~ykng~~~vP--iptY~~g~~~ 75 (528)
T KOG2476|consen 5 DAKILVCGDVE--GRFDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAEVEKYKNGTKKVP--IPTYFLGDNA 75 (528)
T ss_pred CceEEEEcCcc--ccHHHHHHHHHHHhhcCCCceEEEEecccCCCccchhHHHHHhcCCccCc--eeEEEecCCC
Confidence 46999999983 33455565553 3457999999999875554566666554333332 7888777765
No 143
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=78.26 E-value=12 Score=39.98 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=46.1
Q ss_pred CCceEEEEecCCCcEEEEEEcCCCCCCcEEEEeccCCCCCeeEEeeEEEEeeeeeecCeEEEEEeCCCCCCCEEEEEeCc
Q 019979 42 HPQQVHISLAGDSHMRVTWITDDESSPSVVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLEHDTVYFYRCGR 121 (333)
Q Consensus 42 ~p~~v~l~~~~~~~~~v~W~t~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~Y~v~~ 121 (333)
.|.++...-....++.|.|............|..--...+ .+... ......++.+|+||+|.|.|.|||..
T Consensus 523 gp~~~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~---~~~~~------~~~~n~~e~ti~gL~k~TeY~~~vvA 593 (1381)
T KOG4221|consen 523 GPVQLQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDD---TGKEL------RVENNATEYTINGLEKYTEYSIRVVA 593 (1381)
T ss_pred CCccccccccCcceEEEEecCCCCCCCCceEEEEEEEcCC---CCceE------EEecCccEEEeecCCCccceEEEEEE
Confidence 4444322223478999999988644444444433110000 00000 11223456778899999999999863
Q ss_pred --------CCCeeEEECC
Q 019979 122 --------QGPEFEFKTP 131 (333)
Q Consensus 122 --------~s~~~~F~t~ 131 (333)
.|...+|+|.
T Consensus 594 ~N~~G~g~sS~~i~V~Tl 611 (1381)
T KOG4221|consen 594 YNSAGSGVSSADITVRTL 611 (1381)
T ss_pred ecCCCCCCCCCceEEEec
Confidence 2566778774
No 144
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=77.30 E-value=8.8 Score=40.39 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=48.1
Q ss_pred CCCceEEEEecCCCcEEEEEEcCCCCCCcEEEEeccCC---CCCeeEEeeEEEEeeeeeecCeEEEEEeCCCCCCCEEEE
Q 019979 41 SHPQQVHISLAGDSHMRVTWITDDESSPSVVEYGTSPG---GYNCGAEGESTSYRYLFYRSGKIHHTVIGPLEHDTVYFY 117 (333)
Q Consensus 41 ~~p~~v~l~~~~~~~~~v~W~t~~~~~~~~v~y~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~Y 117 (333)
..|.+|++.-..+++++++|.-......+...|..... ...+.+..+ ......+. +++++.+|.|-..|.|
T Consensus 616 gpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~~W~~v~~-----vp~~~~~~-~sa~vv~L~Pwv~YeF 689 (1051)
T KOG3513|consen 616 GPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFRTPFPGKWKAVTT-----VPGNITGD-ESATVVNLSPWVEYEF 689 (1051)
T ss_pred CCCCceeEeeeccceEEEEeecCCCCCCCceEEeEEecCCCCCcceEeeE-----CCCcccCc-cceeEEccCCCcceEE
Confidence 35778888766799999999988655455555644322 112222212 11123334 6788999999999999
Q ss_pred EeC
Q 019979 118 RCG 120 (333)
Q Consensus 118 ~v~ 120 (333)
||.
T Consensus 690 RV~ 692 (1051)
T KOG3513|consen 690 RVV 692 (1051)
T ss_pred EEE
Confidence 986
No 145
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=76.65 E-value=5 Score=34.18 Aligned_cols=64 Identities=25% Similarity=0.330 Sum_probs=37.4
Q ss_pred EEEeecCCCCChhhHHHHhh--cCCCCe-EEccccccccccchhhHHHHHHhhhhhhcC--CceEEccCCCCCC
Q 019979 140 AVAGDLGQTGWTKSTLDHIG--QCKYDV-HLLPGDLSYADYMQHRWDTFGELVQPLASA--RPWMVTQGNHEKE 208 (333)
Q Consensus 140 ~~~gD~~~~~~~~~~~~~i~--~~~~d~-vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~--~P~~~~~GNHD~~ 208 (333)
.+.||+|.. ...+++..+ ..-||. .|++||+++.+-. ..+.|.-++ -|..+ ..+-.+.||||..
T Consensus 49 TvCGDIHGQ--FyDL~eLFrtgG~vP~tnYiFmGDfVDRGyy--SLEtfT~l~-~LkaryP~~ITLlRGNHEsR 117 (306)
T KOG0373|consen 49 TVCGDIHGQ--FYDLLELFRTGGQVPDTNYIFMGDFVDRGYY--SLETFTLLL-LLKARYPAKITLLRGNHESR 117 (306)
T ss_pred eEeeccchh--HHHHHHHHHhcCCCCCcceEEeccccccccc--cHHHHHHHH-HHhhcCCceeEEeeccchhh
Confidence 578999854 334455443 233454 7889999986543 233333222 22222 3466689999984
No 146
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=76.47 E-value=3 Score=34.16 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=22.4
Q ss_pred eEEEEeccccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCccccccc
Q 019979 281 WLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERS 331 (333)
Q Consensus 281 ~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~R~ 331 (333)
..|+++|.|...... +.+.+++++||+|.....
T Consensus 108 ~~i~l~H~~~~~~~~------------------~~~~d~vi~GHtH~~~~~ 140 (168)
T cd07390 108 RRVYLSHYPILEWNG------------------LDRGSWNLHGHIHSNSPD 140 (168)
T ss_pred EEEEEEeCCcccCCC------------------CCCCeEEEEeeeCCCCCC
Confidence 479999976432100 346789999999976543
No 147
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=68.62 E-value=4 Score=19.93 Aligned_cols=13 Identities=8% Similarity=0.248 Sum_probs=6.1
Q ss_pred CcchhhHHHHHHH
Q 019979 1 MELKFVLTAFVFI 13 (333)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (333)
|++.+|++..+++
T Consensus 1 MMk~vIIlvvLLl 13 (19)
T PF13956_consen 1 MMKLVIILVVLLL 13 (19)
T ss_pred CceehHHHHHHHh
Confidence 5665444433333
No 148
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=68.17 E-value=20 Score=27.36 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=15.7
Q ss_pred CcchhhHHHHHHHHhcCCC
Q 019979 1 MELKFVLTAFVFISATVTT 19 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (333)
|++.++++|.+++|.+|..
T Consensus 1 Mrk~~~~~l~~~lLvGCsS 19 (123)
T COG5633 1 MRKLCLLSLALLLLVGCSS 19 (123)
T ss_pred CceehHHHHHHHHhhccCC
Confidence 7777778888888899984
No 149
>PRK11627 hypothetical protein; Provisional
Probab=67.23 E-value=17 Score=30.65 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.0
Q ss_pred CcchhhHHHH-HHHHhcCCC
Q 019979 1 MELKFVLTAF-VFISATVTT 19 (333)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~ 19 (333)
|.||++|.|+ +++|++|+.
T Consensus 1 mlkklll~l~a~~~L~gCA~ 20 (192)
T PRK11627 1 MLKKILFPLVALFMLAGCAT 20 (192)
T ss_pred ChHHHHHHHHHHHHHHhhcC
Confidence 7888887666 777999994
No 150
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=67.15 E-value=38 Score=25.20 Aligned_cols=70 Identities=13% Similarity=0.120 Sum_probs=38.6
Q ss_pred CCceEEEEecCCCcEEEEEEcCCCCC---CcEEEEeccCCCCCeeEEeeEEEEeeeeeecCeEEEEEeCCCC--CCCEEE
Q 019979 42 HPQQVHISLAGDSHMRVTWITDDESS---PSVVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLE--HDTVYF 116 (333)
Q Consensus 42 ~p~~v~l~~~~~~~~~v~W~t~~~~~---~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~--p~t~Y~ 116 (333)
+|..|.+... .-.-++.|.-..... .-.|+|....+.....+. .+.. . ...+..|+... +...|+
T Consensus 24 ~P~nv~~~s~-nf~~iL~W~~~~~~~~~~~ytVq~~~~~~~~W~~v~-~C~~------i--~~~~Cdlt~~~~~~~~~Y~ 93 (107)
T PF01108_consen 24 APQNVTVDSV-NFKHILRWDPGPGSPPNVTYTVQYKKYGSSSWKDVP-GCQN------I--TETSCDLTDETSDPSESYY 93 (107)
T ss_dssp SCEEEEEEEE-TTEEEEEEEESTTSSSTEEEEEEEEESSTSCEEEEC-CEEE------E--SSSEEECTTCCTTTTSEEE
T ss_pred CCCeeEEEEE-CCceEEEeCCCCCCCCCeEEEEEEEecCCcceeecc-ceec------c--cccceeCcchhhcCcCCEE
Confidence 5777777644 455788999843322 237888833332222221 1111 0 12456666643 688899
Q ss_pred EEeCc
Q 019979 117 YRCGR 121 (333)
Q Consensus 117 Y~v~~ 121 (333)
.||..
T Consensus 94 ~rV~A 98 (107)
T PF01108_consen 94 ARVRA 98 (107)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99864
No 151
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=66.93 E-value=15 Score=32.20 Aligned_cols=74 Identities=12% Similarity=0.065 Sum_probs=50.2
Q ss_pred CCCeeEEEEeecCCCCChhhHHHHhhcCCCCeEEccccccccccc---hhhHHHHHHhhhhhhcCCceEEccCCCCCC
Q 019979 134 QFPITFAVAGDLGQTGWTKSTLDHIGQCKYDVHLLPGDLSYADYM---QHRWDTFGELVQPLASARPWMVTQGNHEKE 208 (333)
Q Consensus 134 ~~~~~f~~~gD~~~~~~~~~~~~~i~~~~~d~vl~~GDl~~~~~~---~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~ 208 (333)
++..+|++.+|.+.. .....++.+.+.+|+.+|+.|=.+|-.+. ....+.-.+.++.+....+--.+..-|=..
T Consensus 174 dg~~~i~faSDvqGp-~~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~~~lViDHHllR 250 (304)
T COG2248 174 DGKSSIVFASDVQGP-INDEALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEETNATLVIDHHLLR 250 (304)
T ss_pred cCCeEEEEcccccCC-CccHHHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHHHhCcceEEEeehhhc
Confidence 567889999999643 34678889989999999999999965443 122233344555555555555566666553
No 152
>PRK13792 lysozyme inhibitor; Provisional
Probab=66.47 E-value=38 Score=26.40 Aligned_cols=18 Identities=11% Similarity=-0.058 Sum_probs=13.5
Q ss_pred CcchhhHHHHHHH--HhcCC
Q 019979 1 MELKFVLTAFVFI--SATVT 18 (333)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~ 18 (333)
||+.|.++|+++. |+.|.
T Consensus 1 mk~~l~~ll~~~~~lLsaCs 20 (127)
T PRK13792 1 MKKALWLLLAAVPVVLVACG 20 (127)
T ss_pred ChhHHHHHHHHHHhheeccc
Confidence 8877777777777 66676
No 153
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=64.96 E-value=8 Score=35.47 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=37.5
Q ss_pred eEEEEeecCCCCChhhHHHHhh-cCCC--CeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCC
Q 019979 138 TFAVAGDLGQTGWTKSTLDHIG-QCKY--DVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKE 208 (333)
Q Consensus 138 ~f~~~gD~~~~~~~~~~~~~i~-~~~~--d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~ 208 (333)
-+.+.||+|... -++++... ...| --.+++||.++.+...-+--.+.-.+ ++.-...++...||||..
T Consensus 89 PiTVCGDIHGQf--~DLmKLFEVGG~PA~t~YLFLGDYVDRGyFSiECvlYLwsL-Ki~yp~tl~lLRGNHECr 159 (517)
T KOG0375|consen 89 PITVCGDIHGQF--FDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWSL-KINYPKTLFLLRGNHECR 159 (517)
T ss_pred CeeEecccchHH--HHHHHHHHccCCcccceeEeeccccccceeeeehHHHHHHH-hcCCCCeEEEecCCcchh
Confidence 356799998543 34444443 2223 34789999998654311111111111 122235678899999984
No 154
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.52 E-value=8.4 Score=30.78 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=19.8
Q ss_pred HHHHHHHHhCCCcEEEecCcccccc
Q 019979 306 AIMEPLLYAASVDLVLAGHVHAYER 330 (333)
Q Consensus 306 ~~l~~l~~~~~v~lvl~GH~H~y~R 330 (333)
+.+.-+-++.+||+.++||+|.++-
T Consensus 97 ~sL~~LaRqldvDILl~G~Th~f~A 121 (183)
T KOG3325|consen 97 ESLALLARQLDVDILLTGHTHKFEA 121 (183)
T ss_pred HHHHHHHHhcCCcEEEeCCceeEEE
Confidence 4555566778999999999998764
No 155
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=61.23 E-value=5.3 Score=39.45 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=31.2
Q ss_pred HhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCC
Q 019979 157 HIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEK 207 (333)
Q Consensus 157 ~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~ 207 (333)
.|++.-+|-+-++||+.+.+...+ . .++.|...--+=.-+||||+
T Consensus 179 lIqrL~VDhLHIvGDIyDRGp~pd---~---ImD~Lm~~hsvDIQWGNHDI 223 (640)
T PF06874_consen 179 LIQRLAVDHLHIVGDIYDRGPRPD---K---IMDRLMNYHSVDIQWGNHDI 223 (640)
T ss_pred HHHHHhhhheeecccccCCCCChh---H---HHHHHhcCCCccccccchHH
Confidence 345778999999999998766432 2 34444443445568999998
No 156
>PRK09453 phosphodiesterase; Provisional
Probab=59.98 E-value=9.1 Score=31.67 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=12.0
Q ss_pred hCCCcEEEecCccc
Q 019979 314 AASVDLVLAGHVHA 327 (333)
Q Consensus 314 ~~~v~lvl~GH~H~ 327 (333)
..++|++++||+|.
T Consensus 116 ~~~~d~vi~GHtH~ 129 (182)
T PRK09453 116 LHDGDVLVYGHTHI 129 (182)
T ss_pred ccCCCEEEECCCCC
Confidence 45689999999996
No 157
>PHA03008 hypothetical protein; Provisional
Probab=59.49 E-value=21 Score=29.90 Aligned_cols=43 Identities=2% Similarity=0.005 Sum_probs=29.6
Q ss_pred EEEEeccccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCccccc
Q 019979 282 LLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (333)
Q Consensus 282 ~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~ 329 (333)
-|+++|-|++...+.+.|. +.|.+-+.+-++.+.+.||.-.|.
T Consensus 163 DILITHgPP~GhLD~~vGC-----~~Ll~~I~rVKPKyHVFGh~~~~~ 205 (234)
T PHA03008 163 DILITASPPFAILDDDLAC-----GDLFSKVIKIKPKFHIFNGLTQFS 205 (234)
T ss_pred CEEEeCCCCccccccccCc-----HHHHHHHHHhCCcEEEeCCccccC
Confidence 3999999998765432222 445555556788999999966554
No 158
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=59.15 E-value=49 Score=34.08 Aligned_cols=96 Identities=19% Similarity=0.388 Sum_probs=57.5
Q ss_pred CccccCCCCCCccccCCCCCCCCCceEEEEecCCCcEEEEEEcCCCC-CCcEEEEeccC----CCC-CeeEEeeEEEEee
Q 019979 20 AEYIRPQPRRTLEFPWDPKPSSHPQQVHISLAGDSHMRVTWITDDES-SPSVVEYGTSP----GGY-NCGAEGESTSYRY 93 (333)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~p~~v~l~~~~~~~~~v~W~t~~~~-~~~~v~y~~~~----~~~-~~~~~~~~~~~~~ 93 (333)
..|-|-..+ ..+.||+..++ +|..+ +.....|++.+.|.-..+. +..-|.|...= ... ....-|....|.-
T Consensus 314 ~gyyRA~~D-p~~mpCT~PPS-aP~nl-is~vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P 390 (996)
T KOG0196|consen 314 NGYYRADSD-PPSMPCTRPPS-APRNL-ISNVNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTP 390 (996)
T ss_pred CCcccCCCC-CCCCCCCCCCC-cccee-eeecccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECC
Confidence 345554433 37788877776 67777 4447799999999977543 44556665421 110 1111222122221
Q ss_pred eeeecC-eEEEEEeCCCCCCCEEEEEeC
Q 019979 94 LFYRSG-KIHHTVIGPLEHDTVYFYRCG 120 (333)
Q Consensus 94 ~~~~~~-~~~~~~l~~L~p~t~Y~Y~v~ 120 (333)
...+ ..-+|.++||.|-+.|.|.|.
T Consensus 391 --~q~gLt~~~V~v~~L~ah~~YTFeV~ 416 (996)
T KOG0196|consen 391 --RQRGLTETSVTVSDLLAHTNYTFEVE 416 (996)
T ss_pred --CCCCcccceEEEeccccccccEEEEE
Confidence 1112 355788999999999999985
No 159
>PF14292 SusE: SusE outer membrane protein
Probab=58.81 E-value=30 Score=26.56 Aligned_cols=54 Identities=13% Similarity=0.140 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCCCccccCCCCCCccccCCCCCCCC---CceEEEEecCCCcEEEEEEcCCCC
Q 019979 7 LTAFVFISATVTTAEYIRPQPRRTLEFPWDPKPSSH---PQQVHISLAGDSHMRVTWITDDES 66 (333)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~v~l~~~~~~~~~v~W~t~~~~ 66 (333)
|++++++|+.|.... .. .+..|.....-.. ...+.|.-...+..+++|...+..
T Consensus 1 Ll~~~l~l~sC~~D~-~~-----~~~~~~~~~~l~~~~~~~~i~L~~~~~~a~tftW~~~~~~ 57 (122)
T PF14292_consen 1 LLLALLLLTSCEDDD-DN-----PTLNPPSAFELNLPASGSSIVLDEASDNAVTFTWTAADYG 57 (122)
T ss_pred ChHHhhhhcccCCCC-cc-----cccCCCCceeEEccCCcceEEecccCCceEEEEEECCccC
Confidence 577888889998633 11 1111111111112 233444443467899999987644
No 160
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=58.51 E-value=45 Score=34.45 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=60.8
Q ss_pred CCCceEEEEe--cCCCcEEEEEEcCCCCC-----CcEEEEeccCCCCC-----eeEEeeEEEEee--ee-----eecCeE
Q 019979 41 SHPQQVHISL--AGDSHMRVTWITDDESS-----PSVVEYGTSPGGYN-----CGAEGESTSYRY--LF-----YRSGKI 101 (333)
Q Consensus 41 ~~p~~v~l~~--~~~~~~~v~W~t~~~~~-----~~~v~y~~~~~~~~-----~~~~~~~~~~~~--~~-----~~~~~~ 101 (333)
+.+.-+++.. .+.+++.+.|..-..++ .-.+.|...|...- ..+-|.. ++.. .. ..++..
T Consensus 487 Ce~~~l~~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~-~W~~~~v~~~~~~p~~~~~ 565 (1025)
T KOG4258|consen 487 CEDLVLQFSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSN-SWNVVDVDPPDLIPNDGTH 565 (1025)
T ss_pred cccceeeeeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccC-cceEEeccCCcCCCccccc
Confidence 4454455544 34889999999875431 23577777773211 1222221 1111 10 111233
Q ss_pred EEEEeCCCCCCCEEEEEeCc------------CCCeeEEECCCC--CCCeeEEEEeec
Q 019979 102 HHTVIGPLEHDTVYFYRCGR------------QGPEFEFKTPPA--QFPITFAVAGDL 145 (333)
Q Consensus 102 ~~~~l~~L~p~t~Y~Y~v~~------------~s~~~~F~t~p~--~~~~~f~~~gD~ 145 (333)
....|.||+|.|.|-|-|.. .|++.-++|.|. +.++..+.-++.
T Consensus 566 ~~~~l~~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~PspPl~~ls~sns 623 (1025)
T KOG4258|consen 566 PGFLLDGLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSPPLDVLSKSNS 623 (1025)
T ss_pred cceehhcCCccceeEEEEeeeehhhhccccccccceEEEEecCCCCCCcchhhhccCc
Confidence 36889999999999998863 267888999775 455655555554
No 161
>COG2843 PgsA Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]
Probab=55.47 E-value=35 Score=31.90 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=37.4
Q ss_pred HHHHHhhcccCCCCCeEEEEecccc-ccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCccccc
Q 019979 266 WLKDDLSKVDRKKTPWLLVLLHVPW-YNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (333)
Q Consensus 266 WL~~~L~~~~~~~~~~~iv~~H~P~-~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y~ 329 (333)
=+..+++.+++ .++-+|++.|... |.. +....+..+..-+...++++++.+|-|.-+
T Consensus 212 ~~~~~v~~a~k-~adlviv~~HwG~ey~~------~p~~~q~~~a~~lidAGa~iIvGhhpHvlq 269 (372)
T COG2843 212 RVLAAVLAAKK-GADLVIVQPHWGVEYAY------EPAAGQRALARRLIDAGADIIVGHHPHVLQ 269 (372)
T ss_pred hhHHHHHhhhc-cCCEEEEeccccccccC------CCcHHHHHHHHHHHhcCcCeEecCCCCcCc
Confidence 34455555554 6677999999843 221 112235566666667899999999999765
No 162
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=55.08 E-value=12 Score=27.73 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=19.2
Q ss_pred CcchhhHHHHHHHHhcCCCCcccc
Q 019979 1 MELKFVLTAFVFISATVTTAEYIR 24 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (333)
||+.++...+.++|++|+...|.-
T Consensus 1 mKk~ll~~~lallLtgCatqt~~~ 24 (97)
T PF06291_consen 1 MKKLLLAAALALLLTGCATQTFTV 24 (97)
T ss_pred CcHHHHHHHHHHHHcccceeEEEe
Confidence 888887888888999999756654
No 163
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=54.26 E-value=24 Score=26.18 Aligned_cols=64 Identities=14% Similarity=0.310 Sum_probs=28.0
Q ss_pred CCCCceEEEEecCCCcEEEEEEcCCCCCCcEEEEeccCCCCCeeEEeeEEEEeeeeeecCeEEEEEeCCCCCCCEEEEEe
Q 019979 40 SSHPQQVHISLAGDSHMRVTWITDDESSPSVVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLEHDTVYFYRC 119 (333)
Q Consensus 40 ~~~p~~v~l~~~~~~~~~v~W~t~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~Y~v 119 (333)
...|..|.+. ....++|.|...+. ....+..... ... . . -..+-.-+++++.++||+ |.|.+
T Consensus 31 ~f~P~~i~v~--~G~~v~l~~~N~~~-~~h~~~i~~~----~~~---~-----~--l~~g~~~~~~f~~~~~G~-y~~~C 92 (104)
T PF13473_consen 31 GFSPSTITVK--AGQPVTLTFTNNDS-RPHEFVIPDL----GIS---K-----V--LPPGETATVTFTPLKPGE-YEFYC 92 (104)
T ss_dssp EEES-EEEEE--TTCEEEEEEEE-SS-S-EEEEEGGG----TEE---E-----E--E-TT-EEEEEEEE-S-EE-EEEB-
T ss_pred eEecCEEEEc--CCCeEEEEEEECCC-CcEEEEECCC----ceE---E-----E--ECCCCEEEEEEcCCCCEE-EEEEc
Confidence 4456655443 34556777776643 2233333221 110 0 0 133444566667788886 77777
Q ss_pred Cc
Q 019979 120 GR 121 (333)
Q Consensus 120 ~~ 121 (333)
..
T Consensus 93 ~~ 94 (104)
T PF13473_consen 93 TM 94 (104)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 164
>PRK09810 entericidin A; Provisional
Probab=52.39 E-value=9.3 Score=23.32 Aligned_cols=19 Identities=11% Similarity=0.188 Sum_probs=9.9
Q ss_pred CcchhhHHHH--HHHHhcCCC
Q 019979 1 MELKFVLTAF--VFISATVTT 19 (333)
Q Consensus 1 ~~~~~~~~~~--~~~~~~~~~ 19 (333)
|+++++++++ +++|+.|++
T Consensus 1 mMkk~~~l~~~~~~~L~aCNT 21 (41)
T PRK09810 1 MMKRLIVLVLLASTLLTGCNT 21 (41)
T ss_pred ChHHHHHHHHHHHHHHhhhhh
Confidence 5666444333 334666773
No 165
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=49.35 E-value=13 Score=29.86 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=14.1
Q ss_pred CcchhhHHHHHHHHhcCCC
Q 019979 1 MELKFVLTAFVFISATVTT 19 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (333)
|.|.+++++++++|++|+.
T Consensus 1 Mrk~l~~~~l~l~LaGCAt 19 (151)
T PRK13883 1 MRKIVLLALLALALGGCAT 19 (151)
T ss_pred ChhHHHHHHHHHHHhcccC
Confidence 5666666677788899985
No 166
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=48.33 E-value=12 Score=22.99 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=16.8
Q ss_pred Ccchh--hHHHHHHHHhcCCCCccccCCCCCCc
Q 019979 1 MELKF--VLTAFVFISATVTTAEYIRPQPRRTL 31 (333)
Q Consensus 1 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (333)
|++-+ +++++.++|+.|++ -|+|--.++.+
T Consensus 1 MkKi~~~~i~~~~~~L~aCQa-N~iRDvqGGtV 32 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQA-NYIRDVQGGTV 32 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhh-cceecCCCceE
Confidence 66543 33344455888885 66664445444
No 167
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=46.45 E-value=21 Score=31.21 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=21.4
Q ss_pred EEEeccccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCcc
Q 019979 283 LVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVH 326 (333)
Q Consensus 283 iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H 326 (333)
++++|||++-.....-... .........+.++++ .+++-|+.
T Consensus 56 lIItHHP~~f~~~~~~~~~-~~~~~~~~~li~~~I-~vy~~Ht~ 97 (241)
T PF01784_consen 56 LIITHHPLFFKPLKSLTGD-DYKGKIIEKLIKNGI-SVYSAHTN 97 (241)
T ss_dssp EEEESS-SSSSTSSHCHCH-SHHHHHHHHHHHTT--EEEEESHH
T ss_pred EEEEcCchhhcCCcccccc-chhhHHHHHHHHCCC-EEEEeccc
Confidence 7888999854322211111 123344444555888 77788875
No 168
>PRK10301 hypothetical protein; Provisional
Probab=46.18 E-value=1.4e+02 Score=23.13 Aligned_cols=15 Identities=13% Similarity=0.425 Sum_probs=11.5
Q ss_pred CCCCCCceEEEEecC
Q 019979 38 KPSSHPQQVHISLAG 52 (333)
Q Consensus 38 ~~~~~p~~v~l~~~~ 52 (333)
-....|.+|.|+|.+
T Consensus 40 ~v~~~P~~V~L~F~e 54 (124)
T PRK10301 40 QVTAAPQALTLNFSE 54 (124)
T ss_pred ccccCCCEEEEEcCC
Confidence 344579999999876
No 169
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=45.03 E-value=31 Score=25.50 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=20.6
Q ss_pred cCeEEEEEeCCCCCCCEEEEEeCc
Q 019979 98 SGKIHHTVIGPLEHDTVYFYRCGR 121 (333)
Q Consensus 98 ~~~~~~~~l~~L~p~t~Y~Y~v~~ 121 (333)
.+-+.++.+.++.+|+.|.|+|..
T Consensus 43 ~~GvW~~~v~~~~~g~~Y~y~i~g 66 (103)
T cd02856 43 YGGVWHGFLPGIKAGQRYGFRVHG 66 (103)
T ss_pred cCCEEEEEECCCCCCCEEEEEECC
Confidence 456788999999999999999964
No 170
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=44.99 E-value=30 Score=26.32 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.2
Q ss_pred CeEEEEEeCCCCCCCEEEEEeCc
Q 019979 99 GKIHHTVIGPLEHDTVYFYRCGR 121 (333)
Q Consensus 99 ~~~~~~~l~~L~p~t~Y~Y~v~~ 121 (333)
+-++++.+.++.+|+.|.|+|..
T Consensus 48 ~gvW~~~v~~~~~g~~Y~y~v~g 70 (119)
T cd02852 48 GDVWHVFVEGLKPGQLYGYRVDG 70 (119)
T ss_pred CCEEEEEECCCCCCCEEEEEECC
Confidence 45788999999999999999973
No 171
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=44.67 E-value=30 Score=27.70 Aligned_cols=16 Identities=25% Similarity=0.083 Sum_probs=11.0
Q ss_pred chhhHHHHHHHHhcCC
Q 019979 3 LKFVLTAFVFISATVT 18 (333)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (333)
.++++++++++|++|+
T Consensus 2 ~~~~~l~~~llL~gC~ 17 (146)
T TIGR03352 2 RFAVLLAACLLLAGCS 17 (146)
T ss_pred eeHHHHHHHHHHhhcc
Confidence 3455666667799998
No 172
>PRK11443 lipoprotein; Provisional
Probab=44.25 E-value=15 Score=28.59 Aligned_cols=17 Identities=12% Similarity=0.231 Sum_probs=13.7
Q ss_pred cchhhHHHHHHHHhcCC
Q 019979 2 ELKFVLTAFVFISATVT 18 (333)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (333)
||++++++++++|+.|+
T Consensus 1 Mk~~~~~~~~~lLsgCa 17 (124)
T PRK11443 1 MKKFIAPLLALLLSGCQ 17 (124)
T ss_pred ChHHHHHHHHHHHHhcc
Confidence 24788888888899999
No 173
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=44.22 E-value=17 Score=34.57 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=29.3
Q ss_pred hhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCC
Q 019979 158 IGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEK 207 (333)
Q Consensus 158 i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~ 207 (333)
+++...|-+-++||+-+.+...+ . .+..|...-.+=.-+||||.
T Consensus 186 iqrLvVDhLHiVGDIyDRGP~pd---~---Imd~L~~yhsvDiQWGNHDi 229 (648)
T COG3855 186 IQRLVVDHLHIVGDIYDRGPYPD---K---IMDTLINYHSVDIQWGNHDI 229 (648)
T ss_pred HHHHhhhheeeecccccCCCCch---H---HHHHHhhcccccccccCcce
Confidence 34677899999999988766432 2 33344333344558999998
No 174
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=42.70 E-value=1.4e+02 Score=27.15 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=15.9
Q ss_pred EEEeCCCCCCCEEEEEeCc
Q 019979 103 HTVIGPLEHDTVYFYRCGR 121 (333)
Q Consensus 103 ~~~l~~L~p~t~Y~Y~v~~ 121 (333)
..+|.||+||+.|-+.|..
T Consensus 261 tetI~~L~PG~~Yl~dV~~ 279 (300)
T PF10179_consen 261 TETIKGLKPGTTYLFDVYV 279 (300)
T ss_pred eeecccCCCCcEEEEEEEE
Confidence 4489999999999888754
No 175
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=42.68 E-value=21 Score=26.30 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=14.5
Q ss_pred EEEeCCCCCCCEEEEEeCc
Q 019979 103 HTVIGPLEHDTVYFYRCGR 121 (333)
Q Consensus 103 ~~~l~~L~p~t~Y~Y~v~~ 121 (333)
.+.|.+|+|++.|..+|..
T Consensus 68 ~~~l~~L~p~t~YCv~V~~ 86 (106)
T PF09294_consen 68 SVTLSDLKPGTNYCVSVQA 86 (106)
T ss_dssp EEEEES--TTSEEEEEEEE
T ss_pred EEEEeCCCCCCCEEEEEEE
Confidence 4679999999999999864
No 176
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=42.00 E-value=35 Score=24.19 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=18.5
Q ss_pred CeEEEEEeCCCCCCCEEEEEeCc
Q 019979 99 GKIHHTVIGPLEHDTVYFYRCGR 121 (333)
Q Consensus 99 ~~~~~~~l~~L~p~t~Y~Y~v~~ 121 (333)
.-++++.+.++ +|..|.|+|..
T Consensus 39 ~G~W~~~v~~~-~g~~Y~y~v~~ 60 (85)
T cd02853 39 DGWFEAEVPGA-AGTRYRYRLDD 60 (85)
T ss_pred CcEEEEEeCCC-CCCeEEEEECC
Confidence 34677899999 99999999973
No 177
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=41.69 E-value=23 Score=31.43 Aligned_cols=49 Identities=27% Similarity=0.367 Sum_probs=32.7
Q ss_pred HHHHHHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhCCCc-EEEecCcc
Q 019979 265 RWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVD-LVLAGHVH 326 (333)
Q Consensus 265 ~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~-lvl~GH~H 326 (333)
+.|+.-|+..++-+.+ +.-.|.| + ..+.+.+.++++++++| +|+.||+=
T Consensus 115 ~YL~~Cl~~Ykql~i~--a~G~~~~----------E-~eqp~~i~~Ll~~~~PDIlViTGHD~ 164 (283)
T TIGR02855 115 EYLRKCLKLYKKIGVP--VVGIHCK----------E-KEMPEKVLDLIEEVRPDILVITGHDA 164 (283)
T ss_pred HHHHHHHHHHHHhCCc--eEEEEec----------c-hhchHHHHHHHHHhCCCEEEEeCchh
Confidence 4688888876542332 3333433 1 12457899999999888 78999984
No 178
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=40.98 E-value=28 Score=31.04 Aligned_cols=49 Identities=29% Similarity=0.331 Sum_probs=32.8
Q ss_pred HHHHHHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhCCCc-EEEecCcc
Q 019979 265 RWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVD-LVLAGHVH 326 (333)
Q Consensus 265 ~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~-lvl~GH~H 326 (333)
+.|+.-|+..+.-+.+ ..-.|.| ...+.+.+.++++++++| +||+||+=
T Consensus 116 ~YL~~Cl~~Ykql~i~--a~G~~~~-----------E~eqp~~i~~Ll~~~~PDIlViTGHD~ 165 (287)
T PF05582_consen 116 EYLNKCLKVYKQLGIP--AVGIHVP-----------EKEQPEKIYRLLEEYRPDILVITGHDG 165 (287)
T ss_pred HHHHHHHHHHHHcCCc--eEEEEec-----------hHHhhHHHHHHHHHcCCCEEEEeCchh
Confidence 4688888876432332 3333333 123557899999999888 78999974
No 179
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=40.42 E-value=93 Score=29.70 Aligned_cols=76 Identities=9% Similarity=0.076 Sum_probs=46.2
Q ss_pred CCCeeEEEEeecCCCCCh-----hhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhh----------hcCCce
Q 019979 134 QFPITFAVAGDLGQTGWT-----KSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPL----------ASARPW 198 (333)
Q Consensus 134 ~~~~~f~~~gD~~~~~~~-----~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l----------~~~~P~ 198 (333)
....+|+.++|.+.+... .++++......|-.||++|-+....-....-+.+.+-++.| ..+..+
T Consensus 280 ~~d~~fVfLSdV~LD~~~vm~aL~kifqgy~~~pP~~iIlcG~FtS~p~~~~s~~~~k~~f~~LA~~l~~~~~~~ekT~f 359 (525)
T KOG3818|consen 280 NTDTSFVFLSDVFLDDKKVMEALRKIFQGYKDAPPTAIILCGSFTSSPRQTSSSDQLKDGFRWLAAQLTCFRKDYEKTQF 359 (525)
T ss_pred CcCceEEEEehhccccHHHHHHHHHHHhhccCCCCeEEEEeccccccccccchHHHHHHHHHHHHhhccccccccccceE
Confidence 567889999999876421 23334445677899999999975332222222222211111 124678
Q ss_pred EEccCCCCCCC
Q 019979 199 MVTQGNHEKES 209 (333)
Q Consensus 199 ~~~~GNHD~~~ 209 (333)
++|||-.|-..
T Consensus 360 IFVPGP~Dp~~ 370 (525)
T KOG3818|consen 360 IFVPGPNDPWV 370 (525)
T ss_pred EEecCCCCCCc
Confidence 99999999854
No 180
>PRK10799 metal-binding protein; Provisional
Probab=39.62 E-value=66 Score=28.18 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=24.4
Q ss_pred EEEeccccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCcccc
Q 019979 283 LVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAY 328 (333)
Q Consensus 283 iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~y 328 (333)
++++|||++-........ .........+.++++ .+++-|++.-
T Consensus 59 lIitHHP~~~~~~~~~~~--~~~~~~~~~li~~~i-~vy~~Htn~D 101 (247)
T PRK10799 59 AVIVHHGYFWKGESPVIR--GMKRNRLKTLLANDI-NLYGWHLPLD 101 (247)
T ss_pred EEEECCchhccCCCcccc--chHHHHHHHHHHCCC-eEEEEecchh
Confidence 677899986432211111 123344455666777 6778888753
No 181
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=39.49 E-value=27 Score=31.52 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=15.8
Q ss_pred EEEEeCCCCCCCEEEEEeC
Q 019979 102 HHTVIGPLEHDTVYFYRCG 120 (333)
Q Consensus 102 ~~~~l~~L~p~t~Y~Y~v~ 120 (333)
...+|.+|+|+|+||+-|-
T Consensus 15 t~~t~~~L~p~t~YyfdVF 33 (300)
T PF10179_consen 15 TNQTLSGLKPDTTYYFDVF 33 (300)
T ss_pred ceEEeccCCCCCeEEEEEE
Confidence 3457889999999999974
No 182
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=39.28 E-value=71 Score=22.36 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=19.4
Q ss_pred ecCeEEEEEeCCCCCCCEEEEEeCc
Q 019979 97 RSGKIHHTVIGPLEHDTVYFYRCGR 121 (333)
Q Consensus 97 ~~~~~~~~~l~~L~p~t~Y~Y~v~~ 121 (333)
..|-.++-.=.+|++|..|.|+|..
T Consensus 24 ~~G~~R~F~T~~L~~G~~y~Y~v~a 48 (75)
T TIGR03000 24 GTGTVRTFTTPPLEAGKEYEYTVTA 48 (75)
T ss_pred cCccEEEEECCCCCCCCEEEEEEEE
Confidence 3455666666799999999999864
No 183
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=39.14 E-value=64 Score=28.28 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=23.0
Q ss_pred EEEeccccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEecCcc
Q 019979 283 LVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVH 326 (333)
Q Consensus 283 iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H 326 (333)
++++|||++-.......... ..++ ...+.++++ .+++-|+.
T Consensus 60 lIitHHP~~f~~~~~~~~~~-~~~~-~~~li~~~I-~vy~~Ht~ 100 (249)
T TIGR00486 60 LIITHHPLIWKPLKRLIRGI-KPGR-LKILLQNDI-SLYSAHTN 100 (249)
T ss_pred EEEEcCccccCCcccccCCC-HHHH-HHHHHHCCC-eEEEeecc
Confidence 77789998543221111111 2344 445777888 67787764
No 184
>PRK13791 lysozyme inhibitor; Provisional
Probab=39.11 E-value=91 Score=23.77 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=8.3
Q ss_pred hhHHHHHHHHhcCC
Q 019979 5 FVLTAFVFISATVT 18 (333)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (333)
+.+.+++++|+.|+
T Consensus 7 ~~~~~~~~~ls~~~ 20 (113)
T PRK13791 7 IPFTLFLAALSAST 20 (113)
T ss_pred HHHHHHHHHHhhhh
Confidence 44555555567776
No 185
>PF06788 UPF0257: Uncharacterised protein family (UPF0257); InterPro: IPR010646 This is a group of proteins of unknown function.; GO: 0005886 plasma membrane
Probab=39.11 E-value=34 Score=29.73 Aligned_cols=18 Identities=22% Similarity=0.325 Sum_probs=16.4
Q ss_pred CcchhhHHHHHHHHhcCC
Q 019979 1 MELKFVLTAFVFISATVT 18 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (333)
||+.++++++.++|++|.
T Consensus 1 ~k~~~~~~~la~~L~~cd 18 (236)
T PF06788_consen 1 MKKTLLLLALAILLAGCD 18 (236)
T ss_pred CceeeHHHHHHHHhhhcc
Confidence 889999999999999985
No 186
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=38.89 E-value=41 Score=24.65 Aligned_cols=25 Identities=8% Similarity=0.102 Sum_probs=20.9
Q ss_pred ecCeEEEEEeCCCCCCCEEEEEeCc
Q 019979 97 RSGKIHHTVIGPLEHDTVYFYRCGR 121 (333)
Q Consensus 97 ~~~~~~~~~l~~L~p~t~Y~Y~v~~ 121 (333)
..+-++++.+.++.+|..|.|+|..
T Consensus 44 ~~~gvw~~~v~~~~~g~~Y~y~i~~ 68 (100)
T cd02860 44 GENGVWSVTLDGDLEGYYYLYEVKV 68 (100)
T ss_pred CCCCEEEEEeCCccCCcEEEEEEEE
Confidence 3456788999999999999999964
No 187
>PF11714 Inhibitor_I53: Thrombin inhibitor Madanin ; InterPro: IPR021716 Members of this family are the peptidase inhibitor madanin proteins. These proteins were isolated from tick saliva [].
Probab=38.83 E-value=45 Score=22.75 Aligned_cols=19 Identities=32% Similarity=0.207 Sum_probs=13.4
Q ss_pred CcchhhHHHHHHHHhcCCC
Q 019979 1 MELKFVLTAFVFISATVTT 19 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (333)
|+.+-||+|.+.+.+.+-+
T Consensus 1 MKhFaiLilavVaSAvVMA 19 (78)
T PF11714_consen 1 MKHFAILILAVVASAVVMA 19 (78)
T ss_pred CchHHHHHHHHHHHHHHHh
Confidence 7777777777777766543
No 188
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=36.93 E-value=36 Score=28.21 Aligned_cols=18 Identities=6% Similarity=0.130 Sum_probs=14.4
Q ss_pred CcchhhHHHHHHHHhcCC
Q 019979 1 MELKFVLTAFVFISATVT 18 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (333)
|+..+.++|+++++++|.
T Consensus 1 ~~~~~~~~~~~~~~~~c~ 18 (177)
T TIGR03516 1 MKHLIAVILLLLLLLGCK 18 (177)
T ss_pred CceeHHHHHHHHHHhhcC
Confidence 776677777778888998
No 189
>PRK10449 heat-inducible protein; Provisional
Probab=36.30 E-value=22 Score=28.18 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=16.2
Q ss_pred CcchhhHHHHHHHHhcCCC
Q 019979 1 MELKFVLTAFVFISATVTT 19 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (333)
||+.+++++++++|+.|+.
T Consensus 1 mk~~~~~~~~~~~l~~C~~ 19 (140)
T PRK10449 1 MKKVVALVALSLLMAGCVS 19 (140)
T ss_pred ChhHHHHHHHHHHHHHhcC
Confidence 8888888888889999983
No 190
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=35.89 E-value=33 Score=27.31 Aligned_cols=19 Identities=5% Similarity=0.104 Sum_probs=15.9
Q ss_pred CcchhhHHHHHHHHhcCCC
Q 019979 1 MELKFVLTAFVFISATVTT 19 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (333)
|.+.+++++++++|++|+.
T Consensus 1 mrk~~~~~~~al~LaGCaT 19 (145)
T PRK13835 1 LRRLLAACILALLLSGCQT 19 (145)
T ss_pred ChhHHHHHHHHHHHhcccc
Confidence 6777888888999999996
No 191
>PRK10397 lipoprotein; Provisional
Probab=35.72 E-value=24 Score=27.23 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=16.0
Q ss_pred cchhhHHHHHHHHhcCCC
Q 019979 2 ELKFVLTAFVFISATVTT 19 (333)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (333)
|+|++++..+++|++|+.
T Consensus 1 mKKii~~~a~~~LaGCa~ 18 (137)
T PRK10397 1 MKKLAIAGALMALAGCAE 18 (137)
T ss_pred CchhHHHHHHHHhhcccc
Confidence 578999999999999994
No 192
>TIGR00752 slp outer membrane lipoprotein, Slp family. Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli, which also contains a close paralog, Haemophilus influenzae and Pasteurella multocida and Vibrio cholera. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from Escherichia coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.
Probab=35.45 E-value=20 Score=29.81 Aligned_cols=18 Identities=17% Similarity=0.122 Sum_probs=14.0
Q ss_pred CcchhhHHHHHHHHhcCC
Q 019979 1 MELKFVLTAFVFISATVT 18 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (333)
|++++.++++.|+|++|+
T Consensus 2 ~~~~lll~~~~l~LsgCa 19 (182)
T TIGR00752 2 GKKGLLFTALCFGLTGCI 19 (182)
T ss_pred ceEEehHHHHHHHHhccc
Confidence 566777777778899998
No 193
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=34.76 E-value=29 Score=24.96 Aligned_cols=18 Identities=11% Similarity=0.117 Sum_probs=12.2
Q ss_pred CcchhhHH---HHHHHHhcCC
Q 019979 1 MELKFVLT---AFVFISATVT 18 (333)
Q Consensus 1 ~~~~~~~~---~~~~~~~~~~ 18 (333)
|++++++. |.+++|++|+
T Consensus 1 mk~klll~aviLs~~LLaGCA 21 (85)
T PRK09973 1 MKTIFTVGAVVLATCLLSGCV 21 (85)
T ss_pred CchhHHHHHHHHHHHHHHHcC
Confidence 78887444 4445778888
No 194
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=33.91 E-value=24 Score=30.19 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=13.1
Q ss_pred cchhhHHHHHHHHhcCCC
Q 019979 2 ELKFVLTAFVFISATVTT 19 (333)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (333)
|+++++++++|++++|+.
T Consensus 1 mk~i~~l~l~lll~~C~~ 18 (216)
T PF11153_consen 1 MKKILLLLLLLLLTGCST 18 (216)
T ss_pred ChHHHHHHHHHHHHhhcC
Confidence 456666668888888884
No 195
>PF10333 Pga1: GPI-Mannosyltransferase II co-activator; InterPro: IPR019433 Pga1 is found only in yeasts and not in mammals. It localises in the ER as a glycosylated integral membrane protein. It binds to the GPI-mannosyltransferase II subunit of the GPI and it is responsible for the second mannose addition to GPI precursors. The GPI-anchoring complex is a glycolipid that functions as a membrane anchor for many cell-surface proteins [].
Probab=33.46 E-value=69 Score=26.68 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=24.4
Q ss_pred ecCeEEEEEeCCCCCCCEEEEEeCc-CCCeeEEE
Q 019979 97 RSGKIHHTVIGPLEHDTVYFYRCGR-QGPEFEFK 129 (333)
Q Consensus 97 ~~~~~~~~~l~~L~p~t~Y~Y~v~~-~s~~~~F~ 129 (333)
..+....++|++|++|.+|+-|++- ....++|+
T Consensus 61 ~~~~t~~V~L~nl~~~e~y~vKiCW~At~P~sf~ 94 (180)
T PF10333_consen 61 QPGSTTYVELNNLQPGETYQVKICWPATDPISFD 94 (180)
T ss_pred CCCceEEEEeccCCCCCeEEEEEEEeccCceEEe
Confidence 3456778899999999999999873 23445554
No 196
>PF05643 DUF799: Putative bacterial lipoprotein (DUF799); InterPro: IPR008517 This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=33.44 E-value=28 Score=29.79 Aligned_cols=19 Identities=16% Similarity=0.079 Sum_probs=15.3
Q ss_pred CcchhhHHHHHHHHhcCCC
Q 019979 1 MELKFVLTAFVFISATVTT 19 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (333)
||+-+++++.+++|++|+.
T Consensus 1 mk~l~~~l~~~l~LsgCa~ 19 (215)
T PF05643_consen 1 MKKLILGLAAALLLSGCAT 19 (215)
T ss_pred ChhHHHHHHHHHHHhhccC
Confidence 7777777778888999984
No 197
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=33.29 E-value=2.8e+02 Score=24.62 Aligned_cols=19 Identities=11% Similarity=0.141 Sum_probs=13.7
Q ss_pred CCCCCCEEEEEeCc-CCCee
Q 019979 108 PLEHDTVYFYRCGR-QGPEF 126 (333)
Q Consensus 108 ~L~p~t~Y~Y~v~~-~s~~~ 126 (333)
-+++|.+|.-+|.. +.+.+
T Consensus 95 ~~~~G~~Y~L~V~~~~~~~~ 114 (298)
T PF14054_consen 95 RGRPGRTYRLEVETPGGKTY 114 (298)
T ss_pred cccCCCEEEEEEEECCCCEE
Confidence 47889999999876 44443
No 198
>KOG1382 consensus Multiple inositol polyphosphate phosphatase [General function prediction only]
Probab=33.15 E-value=55 Score=31.33 Aligned_cols=50 Identities=16% Similarity=0.105 Sum_probs=28.3
Q ss_pred CcchhhHHHHHHHHhcCCC----CccccC----------------CCCCCccccCCCCCCCCCceEEEEe
Q 019979 1 MELKFVLTAFVFISATVTT----AEYIRP----------------QPRRTLEFPWDPKPSSHPQQVHISL 50 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~----~~~~~~----------------~~~~~~~~~~~~~~~~~p~~v~l~~ 50 (333)
|.++.|+++++++++..++ .++.+. .|..-|..|-.-..+|+|.||++-.
T Consensus 1 m~~~~i~l~ll~~~~~~a~~~~~~~~~~~~~~~f~~~~gskt~Y~~p~~~~g~~~~lp~~C~p~qv~~l~ 70 (467)
T KOG1382|consen 1 MFKSGILLILLAAFIVNAGTIPLGDLARLSLFDFTRLLGSKTPYQFPGFYIGPSRDLPEGCEPKQVQLLI 70 (467)
T ss_pred CchhhHHHHHHHHHHhhccccchhhhhhcchhhhhhhcCCCCccccccccCCCCCCCCCCcceeeeeeeh
Confidence 7888777777777766333 222221 0111222222347789999998753
No 199
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=32.65 E-value=48 Score=29.28 Aligned_cols=139 Identities=17% Similarity=0.195 Sum_probs=71.2
Q ss_pred hhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCCCCCccccccccccccccCcCCC
Q 019979 152 KSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEES 231 (333)
Q Consensus 152 ~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~ 231 (333)
..+++.+.+.+..-++..|-- ...|+...++.+.. -.++++.|=|=...............+.....
T Consensus 22 ~~~l~~a~~~gv~~~~~~~~~------~~~~~~~~~l~~~~---~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~---- 88 (258)
T PRK11449 22 EASLQRAAQAGVGKIIVPATE------AENFARVLALAERY---QPLYAALGLHPGMLEKHSDVSLDQLQQALERR---- 88 (258)
T ss_pred HHHHHHHHHCCCCEEEEeeCC------HHHHHHHHHHHHhC---CCEEEEEeeCcCccccCCHHHHHHHHHHHHhC----
Confidence 356666667777777777642 24566555544432 24888899885432111001111111111100
Q ss_pred CCCCCceEEEEeCCEEEEEEeccCCCCCCHHHHHHHHHHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHH
Q 019979 232 GSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPL 311 (333)
Q Consensus 232 ~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l 311 (333)
.+. ..-+| =|+||-.........|.+++++.|+-+.+-+.| |+.|..- ..+.+.++
T Consensus 89 ---~~~--~~aIG---EiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~P---v~iH~r~-------------a~~~~~~i 144 (258)
T PRK11449 89 ---PAK--VVAVG---EIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLP---VILHSRR-------------THDKLAMH 144 (258)
T ss_pred ---CCC--EEEEE---ecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCC---EEEEecC-------------ccHHHHHH
Confidence 000 11122 355664322223467999999999887554544 5567541 11466777
Q ss_pred HHhCCCcEEEecCccccc
Q 019979 312 LYAASVDLVLAGHVHAYE 329 (333)
Q Consensus 312 ~~~~~v~lvl~GH~H~y~ 329 (333)
++++++. ..|..|.|.
T Consensus 145 l~~~~~~--~~~i~H~fs 160 (258)
T PRK11449 145 LKRHDLP--RTGVVHGFS 160 (258)
T ss_pred HHhcCCC--CCeEEEcCC
Confidence 7777542 145667665
No 200
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=32.64 E-value=55 Score=29.36 Aligned_cols=42 Identities=29% Similarity=0.423 Sum_probs=31.2
Q ss_pred cCCCCeEEccccccccccchhhHHHHHHhhhhhhc-CCceEEccCCCCCC
Q 019979 160 QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLAS-ARPWMVTQGNHEKE 208 (333)
Q Consensus 160 ~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~-~~P~~~~~GNHD~~ 208 (333)
..++|+|+++|-++| |+.|...++.-.. -.|++..||--|..
T Consensus 294 ~G~vDaIvLTGGiA~-------~~~f~~~I~~~v~~iapv~v~PGE~Ele 336 (358)
T COG3426 294 KGKVDAIVLTGGIAY-------EKLFVDAIEDRVSWIAPVIVYPGEDELE 336 (358)
T ss_pred CCCCCEEEEecchhh-------HHHHHHHHHHHHhhhcceEecCCchHHH
Confidence 779999999999986 6666554443322 26999999988873
No 201
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=31.03 E-value=2.2e+02 Score=21.09 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCCcEEEecCccc
Q 019979 305 MAIMEPLLYAASVDLVLAGHVHA 327 (333)
Q Consensus 305 ~~~l~~l~~~~~v~lvl~GH~H~ 327 (333)
.+.+.+..+++++|+++.|+.+.
T Consensus 74 ~~~I~~~~~~~~~dllviG~~~~ 96 (124)
T cd01987 74 AEAIVEFAREHNVTQIVVGKSRR 96 (124)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCC
Confidence 46788888999999999988754
No 202
>PRK10425 DNase TatD; Provisional
Probab=30.83 E-value=54 Score=28.95 Aligned_cols=140 Identities=13% Similarity=0.050 Sum_probs=70.0
Q ss_pred hhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCCCCCccccccccccccccCcCCC
Q 019979 152 KSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEES 231 (333)
Q Consensus 152 ~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~ 231 (333)
..+++...+.+...++.+|-- ...|....++.+.. -.++++.|=|=....................
T Consensus 18 ~~vl~~a~~~gv~~~i~~~~~------~~~~~~~~~l~~~~---~~v~~~~GiHP~~~~~~~~~~~~~l~~~~~~----- 83 (258)
T PRK10425 18 DDVVARAFAAGVNGMLITGTN------LRESQQAQKLARQY---PSCWSTAGVHPHDSSQWQAATEEAIIELAAQ----- 83 (258)
T ss_pred HHHHHHHHHCCCCEEEEeCCC------HHHHHHHHHHHHhC---CCEEEEEEeCcCccccCCHHHHHHHHHhccC-----
Confidence 456666666677777776643 23465555544432 2378889988542111000111111110000
Q ss_pred CCCCCceEEEEeCCEEEEEEeccCCCCCCHHHHHHHHHHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHH
Q 019979 232 GSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPL 311 (333)
Q Consensus 232 ~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l 311 (333)
+. ..- +-=|+||-.........|.++++++|+-+.+-+.| |+.|.+- ..+.+.++
T Consensus 84 ----~~--~va---IGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~P---v~iH~r~-------------a~~~~l~i 138 (258)
T PRK10425 84 ----PE--VVA---IGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMP---VFMHCRD-------------AHERFMAL 138 (258)
T ss_pred ----CC--EEE---EeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCC---eEEEEeC-------------chHHHHHH
Confidence 00 011 22355664322233478999999999887544444 5667651 01456677
Q ss_pred HHhCCCcEEEecCccccccc
Q 019979 312 LYAASVDLVLAGHVHAYERS 331 (333)
Q Consensus 312 ~~~~~v~lvl~GH~H~y~R~ 331 (333)
++++.... -.|+.|.|.-+
T Consensus 139 L~~~~~~~-~~~i~H~fsG~ 157 (258)
T PRK10425 139 LEPWLDKL-PGAVLHCFTGT 157 (258)
T ss_pred HHHhccCC-CCeEEEecCCC
Confidence 77652111 13556777643
No 203
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=30.82 E-value=56 Score=31.90 Aligned_cols=45 Identities=16% Similarity=0.275 Sum_probs=29.3
Q ss_pred eCCEEEEEEec-cCCCCCCHHHHHHHHHHhhcccCCCCCeEEEEecccc
Q 019979 243 VAGAHLIMLGS-YADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPW 290 (333)
Q Consensus 243 ~g~v~fi~lds-~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~ 290 (333)
||+-.+++||- +...+...|| =|.+.+.+.++++.. +|++.|+|-
T Consensus 488 YG~P~lvVLDEPNsNLD~~GE~--AL~~Ai~~~k~rG~~-vvviaHRPs 533 (580)
T COG4618 488 YGDPFLVVLDEPNSNLDSEGEA--ALAAAILAAKARGGT-VVVIAHRPS 533 (580)
T ss_pred cCCCcEEEecCCCCCcchhHHH--HHHHHHHHHHHcCCE-EEEEecCHH
Confidence 47778999995 3333333343 466666666554544 899999995
No 204
>PRK11372 lysozyme inhibitor; Provisional
Probab=29.87 E-value=1.5e+02 Score=22.35 Aligned_cols=16 Identities=6% Similarity=0.202 Sum_probs=11.1
Q ss_pred chhhHHHHHHHHhcCC
Q 019979 3 LKFVLTAFVFISATVT 18 (333)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (333)
|++++++.+++|+.|+
T Consensus 4 k~ll~~~~~~lL~gCs 19 (109)
T PRK11372 4 KKLLIICLPVLLTGCS 19 (109)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3455666666688998
No 205
>COG5510 Predicted small secreted protein [Function unknown]
Probab=29.46 E-value=35 Score=21.01 Aligned_cols=14 Identities=14% Similarity=0.057 Sum_probs=7.5
Q ss_pred hHHHHHHHHhcCCC
Q 019979 6 VLTAFVFISATVTT 19 (333)
Q Consensus 6 ~~~~~~~~~~~~~~ 19 (333)
+++++.++++.|++
T Consensus 11 ~vll~s~llaaCNT 24 (44)
T COG5510 11 LVLLASTLLAACNT 24 (44)
T ss_pred HHHHHHHHHHHhhh
Confidence 34445555666763
No 206
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=28.16 E-value=1.7e+02 Score=23.42 Aligned_cols=11 Identities=9% Similarity=-0.100 Sum_probs=6.5
Q ss_pred cCCCCeEEccc
Q 019979 160 QCKYDVHLLPG 170 (333)
Q Consensus 160 ~~~~d~vl~~G 170 (333)
..+||.|++..
T Consensus 48 ~~~p~~vvi~~ 58 (171)
T cd04502 48 PYQPRRVVLYA 58 (171)
T ss_pred cCCCCEEEEEE
Confidence 45777765543
No 207
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=27.84 E-value=1.2e+02 Score=21.17 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=19.7
Q ss_pred ecCeEEEEEeC-CCCCCC-EEEEEeCcC
Q 019979 97 RSGKIHHTVIG-PLEHDT-VYFYRCGRQ 122 (333)
Q Consensus 97 ~~~~~~~~~l~-~L~p~t-~Y~Y~v~~~ 122 (333)
...-+++++|. ++++|. .|.|+|...
T Consensus 46 ~~~G~w~~~~~~~~~~g~~~Y~y~i~~~ 73 (85)
T PF02922_consen 46 DDDGVWEVTVPGDLPPGGYYYKYRIDGD 73 (85)
T ss_dssp CTTTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred CCCCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence 34456778888 899985 999998654
No 208
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=25.95 E-value=49 Score=20.92 Aligned_cols=6 Identities=0% Similarity=0.152 Sum_probs=3.3
Q ss_pred HHhcCC
Q 019979 13 ISATVT 18 (333)
Q Consensus 13 ~~~~~~ 18 (333)
+|+.|+
T Consensus 18 ~l~~Cn 23 (48)
T PRK10081 18 VLTACN 23 (48)
T ss_pred HHhhhh
Confidence 355566
No 209
>PF15240 Pro-rich: Proline-rich
Probab=25.95 E-value=38 Score=28.00 Aligned_cols=15 Identities=13% Similarity=0.098 Sum_probs=10.3
Q ss_pred hhHHHHHHHHhcCCC
Q 019979 5 FVLTAFVFISATVTT 19 (333)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (333)
|+|||.+.+||+++|
T Consensus 2 LlVLLSvALLALSSA 16 (179)
T PF15240_consen 2 LLVLLSVALLALSSA 16 (179)
T ss_pred hhHHHHHHHHHhhhc
Confidence 566777777777664
No 210
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=25.91 E-value=57 Score=23.65 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=12.7
Q ss_pred hHHHHHHHHhcCCCCccccCC
Q 019979 6 VLTAFVFISATVTTAEYIRPQ 26 (333)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (333)
|+++.++.++...+++|...+
T Consensus 15 i~~l~li~~~~~~~ge~gGaD 35 (97)
T COG1930 15 ILALPLIPFSFVTDGEFGGAD 35 (97)
T ss_pred HHHHHHHHheecccccccCCc
Confidence 444445555666667777766
No 211
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=25.39 E-value=2.9e+02 Score=21.38 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhcccCCCCC-eEEEEeccccccCCCCCCCC--ChhHHHHHHHHHHhCCCcEEEecC
Q 019979 261 SDQYRWLKDDLSKVDRKKTP-WLLVLLHVPWYNSNEAHQGE--GDGMMAIMEPLLYAASVDLVLAGH 324 (333)
Q Consensus 261 ~~q~~WL~~~L~~~~~~~~~-~~iv~~H~P~~~~~~~~~~~--~~~~~~~l~~l~~~~~v~lvl~GH 324 (333)
.+-+++.+..++.. .+ -.|.++....+......... .....+.|..+...|+|++++|++
T Consensus 18 ~~al~~A~aa~~~g----h~v~~vFf~~DgV~~a~~~q~p~~~~~n~~~~~~~L~~~~~v~l~vC~~ 80 (128)
T PRK00207 18 SSAYQFAQALLAEG----HELVSVFFYQDGVLNANALTVPASDEFDLVRAWQQLAAEHGVALNVCVA 80 (128)
T ss_pred HHHHHHHHHHHhCC----CCeeEEEEehHHHHHHhcCCCCchhhhhHHHHHHHHHHhcCCEEEEeHH
Confidence 45556666665542 22 35777776665433322222 123567788877999999999976
No 212
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=25.29 E-value=2.1e+02 Score=25.21 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhcccCCCCC-eEEEEeccccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEec
Q 019979 261 SDQYRWLKDDLSKVDRKKTP-WLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAG 323 (333)
Q Consensus 261 ~~q~~WL~~~L~~~~~~~~~-~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~G 323 (333)
.+..+-.++.|.+ +.| .+|+..|+..+.... . +.+.+-+.+.++|++|-|
T Consensus 118 p~V~~~a~~~l~~----~~p~l~ivg~h~GYf~~~e--------~-~~i~~~I~~s~pdil~Vg 168 (253)
T COG1922 118 PGVAEQAAAKLRA----KYPGLKIVGSHDGYFDPEE--------E-EAIVERIAASGPDILLVG 168 (253)
T ss_pred HHHHHHHHHHHHH----HCCCceEEEecCCCCChhh--------H-HHHHHHHHhcCCCEEEEe
Confidence 5555556666665 334 467777777664321 2 577777888899988876
No 213
>COG3910 Predicted ATPase [General function prediction only]
Probab=24.55 E-value=1e+02 Score=26.22 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=24.1
Q ss_pred EEEEeccCCCCCCHHHHHHHHHHhhcccCCCCCeEEEEeccccc
Q 019979 248 LIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWY 291 (333)
Q Consensus 248 fi~lds~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~ 291 (333)
+..||--..--....|++.|... ....++.+. +|+..|.|+.
T Consensus 149 iYiLDEPEa~LSp~RQlella~l-~~la~sGaQ-~IiATHSPiL 190 (233)
T COG3910 149 IYILDEPEAALSPSRQLELLAIL-RDLADSGAQ-IIIATHSPIL 190 (233)
T ss_pred eEEecCccccCCHHHHHHHHHHH-HHHHhcCCe-EEEEecChhh
Confidence 55666422111247888877643 332223555 8999999973
No 214
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=23.89 E-value=57 Score=31.94 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=13.0
Q ss_pred cCCceEEccCCCCCC
Q 019979 194 SARPWMVTQGNHEKE 208 (333)
Q Consensus 194 ~~~P~~~~~GNHD~~ 208 (333)
-.+|++.+-||||-.
T Consensus 119 IsIPVFsIHGNHDDp 133 (646)
T KOG2310|consen 119 ISIPVFSIHGNHDDP 133 (646)
T ss_pred eeeeeEEeecCCCCC
Confidence 349999999999984
No 215
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=23.86 E-value=2.9e+02 Score=22.53 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhcccCCCCC-eEEEEeccccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEec
Q 019979 261 SDQYRWLKDDLSKVDRKKTP-WLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAG 323 (333)
Q Consensus 261 ~~q~~WL~~~L~~~~~~~~~-~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~G 323 (333)
++..+=+.+.|++. .| ..|+..|+|.+. ....+.+.+.+++.++|+++.|
T Consensus 58 ~~~~~~~~~~l~~~----yP~l~ivg~~~g~f~---------~~~~~~i~~~I~~~~pdiv~vg 108 (172)
T PF03808_consen 58 EEVLEKAAANLRRR----YPGLRIVGYHHGYFD---------EEEEEAIINRINASGPDIVFVG 108 (172)
T ss_pred HHHHHHHHHHHHHH----CCCeEEEEecCCCCC---------hhhHHHHHHHHHHcCCCEEEEE
Confidence 45555555566552 22 245556666551 1234677777888888888876
No 216
>TIGR02722 lp_ uncharacterized proteobacterial lipoprotein. Members of this protein family are restricted to the Proteobacteria, and all are predicted lipoproteins. In genomes that contain the thiK gene for the salvage enzyme thiamin kinase, the member of this family is encoded nearby.
Probab=23.39 E-value=1e+02 Score=25.74 Aligned_cols=15 Identities=0% Similarity=0.193 Sum_probs=10.3
Q ss_pred hhHHHHHHHHhcCCC
Q 019979 5 FVLTAFVFISATVTT 19 (333)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (333)
+.++++.++|++|+.
T Consensus 6 ~~~~~~al~l~gC~~ 20 (189)
T TIGR02722 6 IFVALLALLLSGCVS 20 (189)
T ss_pred HHHHHHHHHHccCCC
Confidence 444566777888974
No 217
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=22.94 E-value=36 Score=21.36 Aligned_cols=13 Identities=0% Similarity=-0.202 Sum_probs=5.7
Q ss_pred hHHHHHHHHhcCC
Q 019979 6 VLTAFVFISATVT 18 (333)
Q Consensus 6 ~~~~~~~~~~~~~ 18 (333)
++||...+|+.|-
T Consensus 10 lfflG~ISlSlCe 22 (46)
T PF03032_consen 10 LFFLGTISLSLCE 22 (46)
T ss_pred HHHHHHcccchHH
Confidence 3333344445554
No 218
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=22.73 E-value=1.2e+02 Score=22.52 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=14.5
Q ss_pred CeeEEEEeecCCCCChhhHHHHhhcCCCCe
Q 019979 136 PITFAVAGDLGQTGWTKSTLDHIGQCKYDV 165 (333)
Q Consensus 136 ~~~f~~~gD~~~~~~~~~~~~~i~~~~~d~ 165 (333)
..+|+.+||.+... .++..++.+.-|+-
T Consensus 64 ~~kfiLIGDsgq~D--peiY~~ia~~~P~~ 91 (100)
T PF09949_consen 64 ERKFILIGDSGQHD--PEIYAEIARRFPGR 91 (100)
T ss_pred CCcEEEEeeCCCcC--HHHHHHHHHHCCCC
Confidence 45666677765432 34445554444443
No 219
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=22.67 E-value=66 Score=21.29 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=11.9
Q ss_pred CcchhhHHH--HHHHHhc-CCCCccccC
Q 019979 1 MELKFVLTA--FVFISAT-VTTAEYIRP 25 (333)
Q Consensus 1 ~~~~~~~~~--~~~~~~~-~~~~~~~~~ 25 (333)
|+.|++++. |+.+.+. .+++-|+++
T Consensus 1 MA~Kl~vialLC~aLva~vQ~APQYa~G 28 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIVQSAPQYAPG 28 (65)
T ss_pred CcchhhHHHHHHHHHHHHHhcCcccCCC
Confidence 788855543 3333333 333445543
No 220
>PRK10812 putative DNAse; Provisional
Probab=22.55 E-value=92 Score=27.61 Aligned_cols=135 Identities=12% Similarity=0.022 Sum_probs=69.2
Q ss_pred hhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCCCCCCCccccccccccccccCcCCC
Q 019979 152 KSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEES 231 (333)
Q Consensus 152 ~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~ 231 (333)
..+++...+.+...++..|--. ..|....++.+.. -.++++.|=|=...... .......+....
T Consensus 23 ~~vl~~a~~~gv~~~~~~~~~~------~~~~~~~~l~~~~---~~v~~~~GiHP~~~~~~--~~~~~l~~~~~~----- 86 (265)
T PRK10812 23 DDVLAKAAARDVKFCLAVATTL------PGYRHMRDLVGER---DNVVFSCGVHPLNQDEP--YDVEELRRLAAE----- 86 (265)
T ss_pred HHHHHHHHHcCCCEEEEeCCCH------HHHHHHHHHHhhC---CCeEEEEEeCCCCCCCh--hHHHHHHHHhcC-----
Confidence 4567777777888888877432 3465554444332 13788888886532110 111111110000
Q ss_pred CCCCCceEEEEeCCEEEEEEeccCCCCCCHHHHHHHHHHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHH
Q 019979 232 GSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPL 311 (333)
Q Consensus 232 ~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l 311 (333)
+. ..- +-=|+||-.........|.++++.+|+-+.+-+. -|+.|..- ..+.+.++
T Consensus 87 ----~~--vva---IGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~---Pv~iH~r~-------------a~~~~l~i 141 (265)
T PRK10812 87 ----EG--VVA---MGETGLDYYYTPETKVRQQESFRHHIQIGRELNK---PVIVHTRD-------------ARADTLAI 141 (265)
T ss_pred ----CC--EEE---EEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCC---CeEEEeeC-------------chHHHHHH
Confidence 00 111 1134555432223357899999999988754343 46667531 11356677
Q ss_pred HHhCCCcEEEecCcccc
Q 019979 312 LYAASVDLVLAGHVHAY 328 (333)
Q Consensus 312 ~~~~~v~lvl~GH~H~y 328 (333)
+++++++. ..|..|.|
T Consensus 142 L~~~~~~~-~~~v~H~f 157 (265)
T PRK10812 142 LREEKVTD-CGGVLHCF 157 (265)
T ss_pred HHhhcCCC-CCEEEEee
Confidence 77765431 12335555
No 221
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.33 E-value=60 Score=24.66 Aligned_cols=12 Identities=17% Similarity=0.434 Sum_probs=5.2
Q ss_pred CcchhhHHHHHH
Q 019979 1 MELKFVLTAFVF 12 (333)
Q Consensus 1 ~~~~~~~~~~~~ 12 (333)
||+-++|+++++
T Consensus 1 MKk~~ll~~~ll 12 (114)
T PF11777_consen 1 MKKIILLASLLL 12 (114)
T ss_pred CchHHHHHHHHH
Confidence 444444443333
No 222
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=22.15 E-value=3.7e+02 Score=20.70 Aligned_cols=59 Identities=20% Similarity=0.200 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhcccCCCCC-eEEEEeccccccCCCCCCC--CChhHHHHHHHHHHhCCCcEEEec
Q 019979 261 SDQYRWLKDDLSKVDRKKTP-WLLVLLHVPWYNSNEAHQG--EGDGMMAIMEPLLYAASVDLVLAG 323 (333)
Q Consensus 261 ~~q~~WL~~~L~~~~~~~~~-~~iv~~H~P~~~~~~~~~~--~~~~~~~~l~~l~~~~~v~lvl~G 323 (333)
.+-+++.+..++. ..+ ..|.++....+........ ......+.|..+...|+|++++|.
T Consensus 17 ~~al~~A~aa~~~----gh~v~~vFf~~DgV~~a~~~q~p~~~~~n~~~~~~~L~~~~~i~l~vC~ 78 (127)
T TIGR03012 17 SSAYQFAQALLAK----GHEIVRVFFYQDGVLNANNLVSPASDEFDLVAAWQQLAQEHQVDLVVCV 78 (127)
T ss_pred HHHHHHHHHHHHC----CCcEEEEEEehHHHHhhccCCCCccccccHHHHHHHHHHhcCCEEEeeH
Confidence 3455666665554 223 3677777766544332111 112356788888889999999994
No 223
>KOG4222 consensus Axon guidance receptor Dscam [Signal transduction mechanisms]
Probab=21.85 E-value=1.3e+02 Score=32.26 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=18.8
Q ss_pred CeEEEEEeCCCCCCCEEEEEeCc
Q 019979 99 GKIHHTVIGPLEHDTVYFYRCGR 121 (333)
Q Consensus 99 ~~~~~~~l~~L~p~t~Y~Y~v~~ 121 (333)
...-.++|.+|.+|+.|.|+|..
T Consensus 804 a~~~sv~i~~l~~g~ay~vtv~a 826 (1281)
T KOG4222|consen 804 ARTGSVTIGNLVTGIAYSVTVAA 826 (1281)
T ss_pred CCCCceEeccccccceEEEEEee
Confidence 34557889999999999999853
No 224
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=21.39 E-value=2.1e+02 Score=20.44 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=35.0
Q ss_pred hhhHHHHhhcCCCCeEEccccccccccchhhHHHHHHhhhhhhcCCceEEccCCCCC
Q 019979 151 TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEK 207 (333)
Q Consensus 151 ~~~~~~~i~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~GNHD~ 207 (333)
..+.++.+.+..||++++-.++...++ ..+.+.++......|++++.+++|.
T Consensus 32 ~~~~~~~~~~~~~d~iiid~~~~~~~~-----~~~~~~i~~~~~~~~ii~~t~~~~~ 83 (112)
T PF00072_consen 32 GEEALELLKKHPPDLIIIDLELPDGDG-----LELLEQIRQINPSIPIIVVTDEDDS 83 (112)
T ss_dssp HHHHHHHHHHSTESEEEEESSSSSSBH-----HHHHHHHHHHTTTSEEEEEESSTSH
T ss_pred HHHHHHHhcccCceEEEEEeeeccccc-----cccccccccccccccEEEecCCCCH
Confidence 356778888888999999877765322 2333344444456898888877764
No 225
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=20.45 E-value=1e+02 Score=28.43 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHhCCCcEEEecCccccccc
Q 019979 302 DGMMAIMEPLLYAASVDLVLAGHVHAYERS 331 (333)
Q Consensus 302 ~~~~~~l~~l~~~~~v~lvl~GH~H~y~R~ 331 (333)
+...+.+..+++++++|++++|=.=+|-|.
T Consensus 66 eea~~~i~~mv~~~~pD~viaGPaFnagrY 95 (349)
T PF07355_consen 66 EEALKKILEMVKKLKPDVVIAGPAFNAGRY 95 (349)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCchH
Confidence 356788999999999999999987777663
No 226
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=20.42 E-value=2.5e+02 Score=21.47 Aligned_cols=15 Identities=7% Similarity=0.235 Sum_probs=7.6
Q ss_pred ccccCCCCCCccccCCC
Q 019979 21 EYIRPQPRRTLEFPWDP 37 (333)
Q Consensus 21 ~~~~~~~~~~~~~~~~~ 37 (333)
.|... ...++.|-.+
T Consensus 26 ~~~~~--~l~i~lP~~~ 40 (129)
T TIGR02801 26 PLLTQ--GVKVDLPKSS 40 (129)
T ss_pred ccccC--CceeeCCCCC
Confidence 45542 2346667644
No 227
>cd02850 Cellulase_N_term Cellulase N-terminus domain. Cellulases are O-glycosyl hydrolases (GHs) that hydrolyze beta 1-4 glucosidic bonds in cellulose. They are usually catagorized into either exoglucanases which sequentially release sugar units from the cellulose chain and endoglucanases which also attack the chain internally. The N-terminus of cellulase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=20.30 E-value=1.6e+02 Score=20.91 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=19.8
Q ss_pred CeEEEEEeCCC-CCCCEEEEEeCc
Q 019979 99 GKIHHTVIGPL-EHDTVYFYRCGR 121 (333)
Q Consensus 99 ~~~~~~~l~~L-~p~t~Y~Y~v~~ 121 (333)
..++.+.++.| +|||+|+-+++.
T Consensus 55 ~~~~~~DFS~~~~pG~~Y~l~~~~ 78 (86)
T cd02850 55 DNVHIIDFSSYRTEGTGYYLSVDG 78 (86)
T ss_pred CeEEEEEcCCCcCCCCeEEEEECC
Confidence 47889999999 899999988875
No 228
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=20.30 E-value=1.1e+02 Score=23.48 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHhCC-CcEEEecCc
Q 019979 303 GMMAIMEPLLYAAS-VDLVLAGHV 325 (333)
Q Consensus 303 ~~~~~l~~l~~~~~-v~lvl~GH~ 325 (333)
...+.+.+++++++ ..++++||.
T Consensus 49 ~~~~~l~~~~~~~~~~~i~itGHS 72 (140)
T PF01764_consen 49 QILDALKELVEKYPDYSIVITGHS 72 (140)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEEET
T ss_pred HHHHHHHHHHhcccCccchhhccc
Confidence 34577778888885 789999995
No 229
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=20.27 E-value=66 Score=27.76 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=14.5
Q ss_pred CcchhhHHHHHHHHhcCCC
Q 019979 1 MELKFVLTAFVFISATVTT 19 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (333)
|++.+.+++++++|++|+.
T Consensus 1 mk~~~~~~~~~l~l~gCa~ 19 (221)
T PRK12407 1 MKRFLILTALLLALCGCES 19 (221)
T ss_pred ChhHHHHHHHHHHHhhccC
Confidence 7667777777778899983
No 230
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=20.23 E-value=66 Score=25.30 Aligned_cols=18 Identities=0% Similarity=0.032 Sum_probs=14.9
Q ss_pred cchhhHHHHHHHHhcCCC
Q 019979 2 ELKFVLTAFVFISATVTT 19 (333)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (333)
|+.+.++|+.|+|++|+.
T Consensus 1 MR~l~~~LL~L~LsGCS~ 18 (133)
T PRK10781 1 MRALPICLLALMLTGCSM 18 (133)
T ss_pred CchHHHHHHHHHHhhccc
Confidence 467888889999999983
No 231
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=20.13 E-value=2.5e+02 Score=22.90 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhcccCCCCCeEEEEeccccccCCCCCCCCChhHHHHHHHHHHhCCCcEEEec
Q 019979 261 SDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAG 323 (333)
Q Consensus 261 ~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~G 323 (333)
++..+=+.+.|++.-. + -.|+..|+|.+.... .+.+.+.+.+.++|+|+.|
T Consensus 56 ~~~~~~~~~~l~~~yp-~--l~i~g~~~g~~~~~~---------~~~i~~~I~~~~pdiv~vg 106 (171)
T cd06533 56 PEVLEKAAERLRARYP-G--LKIVGYHHGYFGPEE---------EEEIIERINASGADILFVG 106 (171)
T ss_pred HHHHHHHHHHHHHHCC-C--cEEEEecCCCCChhh---------HHHHHHHHHHcCCCEEEEE
Confidence 4444445555555211 2 245555777664321 1235666677777777655
Done!