Query 019980
Match_columns 333
No_of_seqs 225 out of 1619
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 09:58:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 3E-18 1E-22 135.8 7.8 80 246-330 11-90 (91)
2 1x4j_A Ring finger protein 38; 99.7 1.5E-17 5.3E-22 126.5 3.3 71 255-331 4-74 (75)
3 2ep4_A Ring finger protein 24; 99.5 7.4E-15 2.5E-19 111.0 6.7 51 280-330 15-65 (74)
4 2kiz_A E3 ubiquitin-protein li 99.5 9.2E-15 3.2E-19 109.0 7.0 51 280-330 14-64 (69)
5 1iym_A EL5; ring-H2 finger, ub 99.5 3.2E-15 1.1E-19 106.6 3.6 48 281-328 6-54 (55)
6 2ect_A Ring finger protein 126 99.5 8.1E-15 2.8E-19 111.8 5.7 51 280-330 15-65 (78)
7 2ecm_A Ring finger and CHY zin 99.5 3.5E-14 1.2E-18 101.0 4.6 48 281-328 6-54 (55)
8 2ecl_A Ring-box protein 2; RNF 99.4 3E-14 1E-18 110.6 3.1 47 283-329 18-76 (81)
9 2ea6_A Ring finger protein 4; 99.4 1E-13 3.6E-18 102.4 4.8 50 280-329 15-68 (69)
10 1v87_A Deltex protein 2; ring- 99.4 1.4E-13 4.8E-18 112.1 6.0 49 282-330 27-95 (114)
11 3ng2_A RNF4, snurf, ring finge 99.4 5.6E-14 1.9E-18 104.8 3.2 51 280-330 10-64 (71)
12 2xeu_A Ring finger protein 4; 99.4 1E-13 3.5E-18 101.0 3.3 50 281-330 4-57 (64)
13 3dpl_R Ring-box protein 1; ubi 99.4 2.6E-13 8.9E-18 111.3 5.1 46 283-328 40-100 (106)
14 2d8t_A Dactylidin, ring finger 99.4 2.7E-13 9.3E-18 101.9 4.7 46 280-328 15-60 (71)
15 1chc_A Equine herpes virus-1 r 99.4 2.8E-13 9.6E-18 100.5 3.6 47 281-329 6-52 (68)
16 2djb_A Polycomb group ring fin 99.4 9.1E-13 3.1E-17 99.3 6.4 49 280-330 15-63 (72)
17 2csy_A Zinc finger protein 183 99.3 8E-13 2.7E-17 101.6 5.8 46 280-328 15-60 (81)
18 2ecn_A Ring finger protein 141 99.3 3.5E-13 1.2E-17 100.6 3.6 47 281-331 16-62 (70)
19 4ayc_A E3 ubiquitin-protein li 99.3 3.7E-13 1.3E-17 114.0 4.1 44 283-329 56-99 (138)
20 2d8s_A Cellular modulator of i 99.3 9.6E-13 3.3E-17 102.8 5.2 49 281-330 16-71 (80)
21 2ct2_A Tripartite motif protei 99.3 2.1E-12 7.1E-17 99.8 7.0 51 280-330 15-69 (88)
22 2yur_A Retinoblastoma-binding 99.3 2.3E-12 7.9E-17 97.8 5.6 48 280-330 15-65 (74)
23 2ysl_A Tripartite motif-contai 99.3 1.6E-12 5.3E-17 97.5 4.6 49 280-331 20-71 (73)
24 2ecy_A TNF receptor-associated 99.3 1.4E-12 4.9E-17 96.5 4.0 48 280-330 15-63 (66)
25 4a0k_B E3 ubiquitin-protein li 99.3 1.5E-13 5.3E-18 114.8 -2.5 47 282-328 50-111 (117)
26 1t1h_A Gspef-atpub14, armadill 99.3 2.5E-12 8.6E-17 97.9 4.4 48 280-330 8-56 (78)
27 2ecw_A Tripartite motif-contai 99.3 4E-12 1.4E-16 97.1 5.3 48 280-330 19-72 (85)
28 3lrq_A E3 ubiquitin-protein li 99.3 2.4E-12 8.3E-17 103.3 3.8 46 282-329 24-70 (100)
29 2y43_A E3 ubiquitin-protein li 99.2 4.1E-12 1.4E-16 101.1 4.2 45 282-329 24-69 (99)
30 2ecv_A Tripartite motif-contai 99.2 4.7E-12 1.6E-16 96.7 3.9 47 281-330 20-72 (85)
31 3fl2_A E3 ubiquitin-protein li 99.2 5.8E-12 2E-16 104.3 4.3 45 282-329 54-99 (124)
32 2ckl_A Polycomb group ring fin 99.2 6.6E-12 2.2E-16 101.6 4.2 48 281-330 16-63 (108)
33 2egp_A Tripartite motif-contai 99.2 2.1E-12 7.2E-17 98.1 1.2 47 280-329 12-65 (79)
34 4ap4_A E3 ubiquitin ligase RNF 99.2 5.2E-12 1.8E-16 103.8 3.6 50 281-330 8-61 (133)
35 2ysj_A Tripartite motif-contai 99.2 1.3E-11 4.3E-16 90.4 4.9 41 280-323 20-63 (63)
36 2ckl_B Ubiquitin ligase protei 99.2 1.1E-11 3.7E-16 107.5 4.9 47 281-329 55-102 (165)
37 3ztg_A E3 ubiquitin-protein li 99.2 2.5E-11 8.4E-16 95.1 6.3 46 280-328 13-61 (92)
38 1g25_A CDK-activating kinase a 99.2 1.3E-11 4.4E-16 91.0 4.4 50 281-330 4-56 (65)
39 1jm7_A BRCA1, breast cancer ty 99.2 1.2E-11 4E-16 99.9 4.1 45 283-330 24-71 (112)
40 2ecj_A Tripartite motif-contai 99.2 2.9E-11 9.8E-16 86.5 5.0 41 280-323 15-58 (58)
41 2ct0_A Non-SMC element 1 homol 99.1 6E-11 2E-15 91.6 6.1 48 280-329 15-64 (74)
42 1z6u_A NP95-like ring finger p 99.1 2.6E-11 8.9E-16 104.6 4.5 46 282-330 80-126 (150)
43 4ap4_A E3 ubiquitin ligase RNF 99.1 2.8E-11 9.4E-16 99.5 3.2 50 281-330 73-126 (133)
44 3l11_A E3 ubiquitin-protein li 99.1 1.5E-11 5E-16 100.5 1.4 46 280-328 15-61 (115)
45 3hct_A TNF receptor-associated 99.1 4.2E-11 1.4E-15 98.5 3.1 46 281-329 19-65 (118)
46 1rmd_A RAG1; V(D)J recombinati 99.1 6.4E-11 2.2E-15 96.8 3.9 46 281-329 24-70 (116)
47 2kr4_A Ubiquitin conjugation f 99.1 8.4E-11 2.9E-15 92.1 4.2 47 280-329 14-60 (85)
48 2kre_A Ubiquitin conjugation f 99.0 1E-10 3.5E-15 94.6 4.1 48 280-330 29-76 (100)
49 1wgm_A Ubiquitin conjugation f 99.0 1.8E-10 6.3E-15 92.8 4.4 48 280-330 22-70 (98)
50 2y1n_A E3 ubiquitin-protein li 99.0 3.2E-10 1.1E-14 111.9 4.4 46 281-329 333-379 (389)
51 1jm7_B BARD1, BRCA1-associated 98.9 1.4E-10 4.6E-15 95.4 1.2 43 282-329 24-67 (117)
52 1e4u_A Transcriptional repress 98.9 4.6E-10 1.6E-14 87.0 3.8 51 280-330 11-63 (78)
53 3knv_A TNF receptor-associated 98.9 1.7E-10 5.9E-15 98.6 1.5 45 281-328 32-77 (141)
54 1bor_A Transcription factor PM 98.9 1.6E-10 5.6E-15 83.4 1.1 46 280-331 6-51 (56)
55 2c2l_A CHIP, carboxy terminus 98.9 3.6E-10 1.2E-14 103.6 3.6 47 280-329 208-255 (281)
56 2vje_A E3 ubiquitin-protein li 98.9 4.6E-10 1.6E-14 83.4 3.0 44 282-328 10-56 (64)
57 4ic3_A E3 ubiquitin-protein li 98.9 5.6E-10 1.9E-14 85.0 2.3 41 282-329 26-67 (74)
58 2vje_B MDM4 protein; proto-onc 98.9 1E-09 3.5E-14 81.3 3.1 45 281-328 8-55 (63)
59 2yu4_A E3 SUMO-protein ligase 98.8 1.2E-09 4.2E-14 86.8 3.3 44 280-326 7-59 (94)
60 3hcs_A TNF receptor-associated 98.8 1.7E-09 5.9E-14 93.8 3.1 47 280-329 18-65 (170)
61 3k1l_B Fancl; UBC, ring, RWD, 98.8 1.3E-09 4.6E-14 105.9 2.5 51 280-330 308-374 (381)
62 2f42_A STIP1 homology and U-bo 98.7 4.7E-09 1.6E-13 93.5 4.0 47 280-329 106-153 (179)
63 2ecg_A Baculoviral IAP repeat- 98.7 5E-09 1.7E-13 79.7 2.5 41 283-330 28-69 (75)
64 1vyx_A ORF K3, K3RING; zinc-bi 98.6 2.6E-08 9.1E-13 73.5 4.0 47 280-329 6-59 (60)
65 2ea5_A Cell growth regulator w 98.6 3.5E-08 1.2E-12 74.2 4.7 43 280-329 15-58 (68)
66 1wim_A KIAA0161 protein; ring 98.6 1.3E-08 4.5E-13 80.3 1.8 46 281-326 6-61 (94)
67 2yho_A E3 ubiquitin-protein li 98.6 1.5E-08 5.1E-13 78.3 2.0 39 283-328 21-60 (79)
68 2bay_A PRE-mRNA splicing facto 98.5 2.8E-08 9.4E-13 73.5 2.8 46 281-329 4-50 (61)
69 3htk_C E3 SUMO-protein ligase 98.5 3.4E-08 1.2E-12 92.8 3.0 49 279-329 180-232 (267)
70 3t6p_A Baculoviral IAP repeat- 98.4 3.2E-08 1.1E-12 96.2 1.0 43 280-329 295-338 (345)
71 3vk6_A E3 ubiquitin-protein li 98.2 1.1E-06 3.9E-11 71.3 4.3 45 282-328 3-48 (101)
72 3nw0_A Non-structural maintena 98.0 2.5E-06 8.7E-11 78.8 4.4 46 281-329 181-229 (238)
73 2ko5_A Ring finger protein Z; 96.6 0.00063 2.2E-08 54.6 1.5 44 282-330 30-74 (99)
74 2lri_C Autoimmune regulator; Z 95.0 0.022 7.6E-07 42.4 4.0 45 281-328 13-61 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 94.1 0.022 7.5E-07 44.6 2.3 34 281-314 4-38 (101)
76 1wil_A KIAA1045 protein; ring 92.2 0.079 2.7E-06 41.7 2.8 31 282-313 17-47 (89)
77 1f62_A Transcription factor WS 90.7 0.097 3.3E-06 36.4 1.7 43 283-325 3-49 (51)
78 2l5u_A Chromodomain-helicase-D 90.3 0.11 3.8E-06 37.8 1.8 43 281-326 12-58 (61)
79 2k16_A Transcription initiatio 89.5 0.12 4E-06 38.8 1.4 49 281-330 19-72 (75)
80 1we9_A PHD finger family prote 88.7 0.083 2.8E-06 38.4 0.0 50 280-329 6-61 (64)
81 1wem_A Death associated transc 87.1 0.37 1.3E-05 36.2 2.8 50 281-331 17-75 (76)
82 3m62_A Ubiquitin conjugation f 86.6 0.44 1.5E-05 51.9 4.0 47 280-329 891-938 (968)
83 1mm2_A MI2-beta; PHD, zinc fin 85.1 0.13 4.4E-06 37.4 -0.7 45 281-328 10-58 (61)
84 2lv9_A Histone-lysine N-methyl 83.5 0.22 7.5E-06 39.6 -0.0 45 281-326 29-76 (98)
85 2xb1_A Pygopus homolog 2, B-ce 82.3 0.2 6.9E-06 40.3 -0.7 48 282-329 5-64 (105)
86 3v43_A Histone acetyltransfera 82.3 0.31 1.1E-05 39.4 0.4 43 283-325 64-111 (112)
87 1wew_A DNA-binding family prot 81.9 0.7 2.4E-05 35.0 2.3 51 280-331 16-77 (78)
88 3i2d_A E3 SUMO-protein ligase 81.9 1 3.5E-05 44.1 4.0 48 280-329 249-300 (371)
89 2yql_A PHD finger protein 21A; 81.8 0.14 4.8E-06 36.4 -1.6 41 282-325 11-55 (56)
90 1weu_A Inhibitor of growth fam 80.9 0.89 3E-05 35.9 2.6 46 280-329 36-88 (91)
91 2puy_A PHD finger protein 21A; 80.8 0.099 3.4E-06 37.7 -2.8 44 282-328 7-54 (60)
92 4fo9_A E3 SUMO-protein ligase 80.3 1.3 4.3E-05 43.2 4.0 48 280-329 215-266 (360)
93 3v43_A Histone acetyltransfera 79.6 2.2 7.5E-05 34.3 4.7 30 282-311 7-42 (112)
94 1wee_A PHD finger family prote 79.4 0.31 1.1E-05 36.3 -0.5 51 280-331 16-71 (72)
95 2l43_A N-teminal domain from h 79.3 0.63 2.2E-05 36.3 1.3 49 280-328 25-77 (88)
96 1xwh_A Autoimmune regulator; P 78.9 0.22 7.5E-06 36.7 -1.4 44 282-328 10-57 (66)
97 2ysm_A Myeloid/lymphoid or mix 78.3 0.58 2E-05 37.4 0.8 34 282-315 9-42 (111)
98 1wen_A Inhibitor of growth fam 77.9 1.9 6.6E-05 32.2 3.5 45 280-328 16-67 (71)
99 1wep_A PHF8; structural genomi 77.5 1.7 5.8E-05 32.8 3.2 45 282-327 14-64 (79)
100 3asl_A E3 ubiquitin-protein li 77.3 0.38 1.3E-05 36.0 -0.5 43 283-326 21-69 (70)
101 2yt5_A Metal-response element- 77.3 0.19 6.7E-06 36.6 -2.1 48 282-329 8-64 (66)
102 2e6s_A E3 ubiquitin-protein li 77.2 0.42 1.4E-05 36.5 -0.3 44 282-325 28-76 (77)
103 2ri7_A Nucleosome-remodeling f 77.0 0.5 1.7E-05 40.6 0.0 45 281-326 9-59 (174)
104 2kgg_A Histone demethylase jar 76.5 0.76 2.6E-05 32.1 0.9 42 283-324 5-52 (52)
105 3shb_A E3 ubiquitin-protein li 76.3 0.32 1.1E-05 37.2 -1.3 42 283-325 29-76 (77)
106 2e6r_A Jumonji/ARID domain-con 76.2 0.26 9E-06 38.7 -1.8 45 281-326 17-66 (92)
107 1fp0_A KAP-1 corepressor; PHD 75.3 0.71 2.4E-05 36.3 0.5 43 282-327 27-73 (88)
108 2ku3_A Bromodomain-containing 74.4 0.69 2.4E-05 34.7 0.2 47 281-327 17-67 (71)
109 3ask_A E3 ubiquitin-protein li 72.2 0.63 2.1E-05 42.6 -0.6 45 282-326 176-225 (226)
110 2ysm_A Myeloid/lymphoid or mix 72.0 0.61 2.1E-05 37.3 -0.7 48 283-330 57-108 (111)
111 1wev_A Riken cDNA 1110020M19; 70.4 0.44 1.5E-05 37.1 -1.8 48 281-328 17-74 (88)
112 2cu8_A Cysteine-rich protein 2 70.2 1.8 6.2E-05 31.6 1.7 39 282-330 11-49 (76)
113 2cs3_A Protein C14ORF4, MY039 69.5 8.6 0.00029 30.0 5.4 36 280-316 15-52 (93)
114 1iml_A CRIP, cysteine rich int 69.2 1.4 4.7E-05 32.3 0.8 43 281-327 28-71 (76)
115 2ca6_A RAN GTPase-activating p 68.5 1.4 4.8E-05 41.1 0.9 8 29-36 251-258 (386)
116 2vpb_A Hpygo1, pygopus homolog 67.2 4.3 0.00015 29.7 3.2 45 281-325 9-65 (65)
117 2lbm_A Transcriptional regulat 66.9 4.5 0.00016 34.3 3.7 41 282-326 65-117 (142)
118 1x64_A Alpha-actinin-2 associa 66.9 7.2 0.00025 29.3 4.5 38 281-329 26-63 (89)
119 3mpx_A FYVE, rhogef and PH dom 64.4 1.4 4.8E-05 42.5 0.0 47 282-328 377-431 (434)
120 2co8_A NEDD9 interacting prote 61.8 2.5 8.6E-05 31.6 1.0 38 282-329 17-54 (82)
121 2kwj_A Zinc finger protein DPF 61.7 0.59 2E-05 37.9 -2.7 45 283-327 61-109 (114)
122 3o70_A PHD finger protein 13; 60.9 1 3.5E-05 33.4 -1.3 45 280-325 19-66 (68)
123 1x63_A Skeletal muscle LIM-pro 60.4 5 0.00017 29.5 2.5 39 282-329 17-55 (82)
124 2kwj_A Zinc finger protein DPF 59.6 3.8 0.00013 33.0 1.8 31 283-313 4-41 (114)
125 2dj7_A Actin-binding LIM prote 59.2 3.3 0.00011 30.9 1.3 37 282-328 17-53 (80)
126 2vnf_A ING 4, P29ING4, inhibit 59.0 1.2 4.1E-05 32.2 -1.2 40 282-325 12-58 (60)
127 1y02_A CARP2, FYVE-ring finger 57.9 1 3.5E-05 37.3 -1.9 44 283-326 22-66 (120)
128 1z60_A TFIIH basal transcripti 57.9 4.1 0.00014 29.6 1.5 41 283-323 18-58 (59)
129 2d8z_A Four and A half LIM dom 56.8 6.2 0.00021 28.0 2.4 37 282-329 7-43 (70)
130 3c6w_A P28ING5, inhibitor of g 56.0 1.5 5E-05 31.6 -1.1 40 282-325 11-57 (59)
131 1x4k_A Skeletal muscle LIM-pro 55.9 6.6 0.00022 28.0 2.4 38 283-329 8-45 (72)
132 2dar_A PDZ and LIM domain prot 55.9 4.2 0.00014 30.7 1.4 36 283-329 28-63 (90)
133 3ql9_A Transcriptional regulat 55.2 11 0.00039 31.4 4.0 41 282-326 59-111 (129)
134 1x61_A Thyroid receptor intera 55.1 6.3 0.00022 28.1 2.2 37 283-328 8-44 (72)
135 1wyh_A SLIM 2, skeletal muscle 54.8 5.6 0.00019 28.3 1.9 39 282-329 7-45 (72)
136 1x62_A C-terminal LIM domain p 53.6 4.9 0.00017 29.5 1.4 36 282-328 17-52 (79)
137 1x4l_A Skeletal muscle LIM-pro 53.4 6.3 0.00021 28.2 1.9 39 282-329 7-47 (72)
138 2ayu_A Nucleosome assembly pro 52.6 1.9 6.4E-05 42.8 -1.4 19 68-86 340-358 (417)
139 3f6q_B LIM and senescent cell 52.5 4.9 0.00017 28.4 1.2 39 282-329 13-51 (72)
140 1nyp_A Pinch protein; LIM doma 52.2 6 0.0002 27.8 1.6 37 282-329 7-43 (66)
141 1a7i_A QCRP2 (LIM1); LIM domai 51.0 4.2 0.00014 29.9 0.7 37 283-329 10-46 (81)
142 1x68_A FHL5 protein; four-and- 51.0 7.2 0.00025 28.3 2.0 37 283-328 8-46 (76)
143 4gne_A Histone-lysine N-methyl 50.9 6.5 0.00022 31.7 1.8 42 281-328 16-64 (107)
144 1joc_A EEA1, early endosomal a 50.6 7.4 0.00025 32.0 2.1 33 282-314 71-104 (125)
145 1weo_A Cellulose synthase, cat 49.5 22 0.00074 28.1 4.5 47 282-328 18-69 (93)
146 2gmg_A Hypothetical protein PF 49.5 2.7 9.1E-05 34.1 -0.7 25 298-327 70-94 (105)
147 1zbd_B Rabphilin-3A; G protein 48.4 5.9 0.0002 33.1 1.2 30 282-311 57-88 (134)
148 1m3v_A FLIN4, fusion of the LI 47.6 12 0.00043 29.7 3.1 47 282-329 34-81 (122)
149 1g47_A Pinch protein; LIM doma 47.3 6.9 0.00023 28.3 1.3 39 282-329 13-51 (77)
150 2g6q_A Inhibitor of growth pro 47.3 2.5 8.4E-05 30.8 -1.1 42 281-326 12-60 (62)
151 2d8y_A Eplin protein; LIM doma 47.0 9.6 0.00033 28.7 2.2 36 283-328 18-53 (91)
152 1m3v_A FLIN4, fusion of the LI 46.4 14 0.00049 29.4 3.3 37 282-328 7-43 (122)
153 2l4z_A DNA endonuclease RBBP8, 45.9 6.4 0.00022 31.9 1.1 38 281-328 62-99 (123)
154 2l3k_A Rhombotin-2, linker, LI 45.9 6.8 0.00023 31.4 1.2 33 281-314 37-69 (123)
155 2cur_A Skeletal muscle LIM-pro 45.7 6.8 0.00023 27.8 1.1 35 283-328 8-42 (69)
156 2d8x_A Protein pinch; LIM doma 45.6 6.9 0.00024 27.8 1.1 37 282-329 7-43 (70)
157 1wig_A KIAA1808 protein; LIM d 45.3 11 0.00036 27.4 2.1 35 283-328 8-42 (73)
158 1dvp_A HRS, hepatocyte growth 45.0 8.6 0.00029 34.1 1.8 34 281-314 162-196 (220)
159 3t7l_A Zinc finger FYVE domain 44.6 11 0.00038 29.0 2.2 45 282-326 22-73 (90)
160 2d8v_A Zinc finger FYVE domain 43.0 12 0.00042 27.8 2.1 30 280-313 8-38 (67)
161 2cuq_A Four and A half LIM dom 42.8 11 0.00038 27.4 1.9 35 283-328 18-52 (80)
162 3zyq_A Hepatocyte growth facto 41.5 11 0.00037 33.8 2.0 47 282-328 166-221 (226)
163 2cor_A Pinch protein; LIM doma 40.9 9.8 0.00034 28.0 1.3 37 282-329 17-53 (79)
164 1v6g_A Actin binding LIM prote 40.8 11 0.00036 27.7 1.5 36 282-328 17-52 (81)
165 1wfk_A Zinc finger, FYVE domai 40.4 14 0.00047 28.5 2.1 47 281-327 10-64 (88)
166 2o35_A Hypothetical protein DU 40.2 11 0.00038 30.3 1.5 11 305-315 43-53 (105)
167 3fyb_A Protein of unknown func 40.1 11 0.00038 30.3 1.5 11 305-315 42-52 (104)
168 1z2q_A LM5-1; membrane protein 39.8 15 0.00051 27.8 2.3 47 282-328 23-78 (84)
169 1vfy_A Phosphatidylinositol-3- 39.5 17 0.00057 26.8 2.4 32 282-313 13-45 (73)
170 2xjy_A Rhombotin-2; oncoprotei 39.3 20 0.00067 28.5 3.0 45 283-328 32-77 (131)
171 1zfo_A LAsp-1; LIM domain, zin 38.9 7.4 0.00025 24.2 0.3 27 282-310 5-31 (31)
172 3a1b_A DNA (cytosine-5)-methyl 38.6 27 0.00091 30.2 3.9 40 282-325 81-133 (159)
173 2dlo_A Thyroid receptor-intera 38.4 11 0.00036 27.7 1.2 35 283-328 18-52 (81)
174 2yw8_A RUN and FYVE domain-con 38.4 15 0.0005 27.8 2.0 47 282-328 21-74 (82)
175 3kv5_D JMJC domain-containing 38.1 5.5 0.00019 40.1 -0.7 44 283-327 40-89 (488)
176 3o7a_A PHD finger protein 13 v 37.9 3.5 0.00012 28.6 -1.5 41 285-325 8-51 (52)
177 3kqi_A GRC5, PHD finger protei 37.7 6.3 0.00022 29.3 -0.2 46 283-328 12-63 (75)
178 1x3h_A Leupaxin; paxillin fami 37.7 10 0.00035 27.6 0.9 37 282-329 17-53 (80)
179 2rsd_A E3 SUMO-protein ligase 37.4 1.8 6E-05 31.9 -3.3 43 283-326 13-65 (68)
180 2pk7_A Uncharacterized protein 37.3 7.6 0.00026 29.0 0.2 18 311-328 2-19 (69)
181 3mjh_B Early endosome antigen 37.0 10 0.00034 24.6 0.7 8 320-327 8-15 (34)
182 1rut_X Flinc4, fusion protein 36.9 17 0.00057 31.2 2.4 45 283-328 35-80 (188)
183 1x4u_A Zinc finger, FYVE domai 35.7 17 0.00058 27.5 2.0 32 282-313 16-48 (84)
184 3pwf_A Rubrerythrin; non heme 34.9 15 0.00052 31.6 1.8 20 300-326 143-162 (170)
185 2egq_A FHL1 protein; LIM domai 34.8 15 0.00051 26.4 1.4 40 282-330 17-59 (77)
186 2jvx_A NF-kappa-B essential mo 34.4 8.5 0.00029 23.9 0.0 13 317-329 3-15 (28)
187 2zet_C Melanophilin; complex, 33.8 15 0.0005 31.4 1.4 43 282-325 70-116 (153)
188 2ayu_A Nucleosome assembly pro 33.7 8.7 0.0003 38.0 0.0 16 71-86 333-348 (417)
189 2pv0_B DNA (cytosine-5)-methyl 33.5 27 0.00092 34.2 3.4 42 282-326 95-148 (386)
190 2ehe_A Four and A half LIM dom 33.4 18 0.0006 26.4 1.7 39 282-329 17-55 (82)
191 2jny_A Uncharacterized BCR; st 33.3 7.1 0.00024 29.0 -0.5 18 311-328 4-21 (67)
192 1wd2_A Ariadne-1 protein homol 32.5 4.3 0.00015 29.3 -1.8 35 283-317 9-48 (60)
193 2cup_A Skeletal muscle LIM-pro 32.1 23 0.00079 26.7 2.2 45 281-329 34-78 (101)
194 1yuz_A Nigerythrin; rubrythrin 31.8 6.6 0.00023 34.8 -1.1 9 318-326 187-195 (202)
195 2lcq_A Putative toxin VAPC6; P 31.5 11 0.00039 31.7 0.4 26 297-328 134-159 (165)
196 2lq6_A Bromodomain-containing 31.3 22 0.00076 27.3 2.0 30 282-312 19-50 (87)
197 2ct7_A Ring finger protein 31; 31.2 3.4 0.00012 31.6 -2.7 19 296-314 43-62 (86)
198 2jmi_A Protein YNG1, ING1 homo 30.0 7.8 0.00027 30.3 -0.9 40 282-325 28-75 (90)
199 1rut_X Flinc4, fusion protein 29.8 28 0.00095 29.7 2.6 37 283-328 72-108 (188)
200 2rgt_A Fusion of LIM/homeobox 29.5 28 0.00096 29.1 2.5 43 280-331 65-107 (169)
201 1b8t_A Protein (CRP1); LIM dom 29.3 15 0.0005 31.6 0.7 11 283-293 118-128 (192)
202 2xqn_T Testin, TESS; metal-bin 28.9 57 0.0019 25.6 4.1 45 281-329 31-75 (126)
203 4fp9_B Mterf domain-containing 28.7 12 0.00041 35.8 0.0 11 98-108 285-295 (335)
204 1r79_A Diacylglycerol kinase, 27.4 51 0.0018 25.3 3.4 38 282-322 40-80 (84)
205 2vrw_B P95VAV, VAV1, proto-onc 27.1 27 0.00093 33.2 2.2 32 281-312 358-391 (406)
206 2iyb_E Testin, TESS, TES; LIM 26.7 23 0.00079 24.8 1.3 39 282-329 4-44 (65)
207 2jr6_A UPF0434 protein NMA0874 25.7 7.4 0.00025 28.9 -1.6 17 312-328 3-19 (68)
208 2kpi_A Uncharacterized protein 25.4 7.5 0.00026 27.7 -1.6 17 312-328 5-21 (56)
209 4bbq_A Lysine-specific demethy 24.8 8.2 0.00028 30.7 -1.7 44 283-326 62-114 (117)
210 2kdx_A HYPA, hydrogenase/ureas 24.7 25 0.00085 28.2 1.2 25 296-326 74-99 (119)
211 2jtn_A LIM domain-binding prot 24.6 28 0.00097 29.5 1.7 43 280-331 119-161 (182)
212 2fiy_A Protein FDHE homolog; F 23.7 8.6 0.0003 36.5 -2.0 39 283-326 185-231 (309)
213 2hf1_A Tetraacyldisaccharide-1 23.6 7.4 0.00025 28.9 -2.0 16 313-328 4-19 (68)
214 1j2o_A FLIN2, fusion of rhombo 23.4 39 0.0013 26.4 2.2 13 302-314 52-64 (114)
215 1lko_A Rubrerythrin all-iron(I 23.3 21 0.00073 31.0 0.6 8 319-326 173-180 (191)
216 3vhs_A ATPase wrnip1; zinc fin 23.2 17 0.00059 22.3 -0.0 11 319-329 8-18 (29)
217 2js4_A UPF0434 protein BB2007; 22.3 7.9 0.00027 28.9 -2.0 16 313-328 4-19 (70)
218 2zd7_A VPS75, vacuolar protein 21.7 23 0.00077 32.7 0.5 21 66-86 194-214 (264)
219 2a20_A Regulating synaptic mem 21.5 3.4 0.00012 30.3 -4.0 44 282-325 11-59 (62)
220 3mkr_B Coatomer subunit alpha; 20.4 31 0.0011 32.9 1.2 39 282-326 264-303 (320)
221 1x4i_A Inhibitor of growth pro 20.3 22 0.00076 26.2 0.1 41 283-327 9-56 (70)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.74 E-value=3e-18 Score=135.83 Aligned_cols=80 Identities=26% Similarity=0.627 Sum_probs=68.1
Q ss_pred CCCCCCCCHHHHhcCCceeecCCCCCCCCCCCCCCCcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccc
Q 019980 246 GSESRGLSADTLATLPTVNYKGGTSQNGSNDSCLGFSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSA 325 (333)
Q Consensus 246 g~~s~GlS~~~I~sLp~~~~~~~~~~~~~~d~~~~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~ 325 (333)
+...+|++++.|..||...+......... ...|+||++.|..+..+++|||+|+||..||.+||+.+.+||+||+
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~~~~~~-----~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~ 85 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDHGAVGQ-----EMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRC 85 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTCSSSSS-----CSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCC
T ss_pred CcCCCCCCHHHHHhCCCeeecccccccCC-----CCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCc
Confidence 34568999999999999988765433322 3449999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 019980 326 EVSTS 330 (333)
Q Consensus 326 ~V~~s 330 (333)
.|.+.
T Consensus 86 ~~~~~ 90 (91)
T 2l0b_A 86 MFPPP 90 (91)
T ss_dssp BSSCC
T ss_pred cCCCC
Confidence 98753
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-17 Score=126.46 Aligned_cols=71 Identities=34% Similarity=0.851 Sum_probs=59.6
Q ss_pred HHHhcCCceeecCCCCCCCCCCCCCCCcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccCCC
Q 019980 255 DTLATLPTVNYKGGTSQNGSNDSCLGFSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTSG 331 (333)
Q Consensus 255 ~~I~sLp~~~~~~~~~~~~~~d~~~~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~s~ 331 (333)
..|..||..++....... ....|+||++.|..+..++.|||+|+||..||.+||+.+.+||+||+.|.+++
T Consensus 4 ~~i~~lp~~~~~~~~~~~------~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNNHQS------EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPSS 74 (75)
T ss_dssp CCCSSCCCEEBCSSSCSS------SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCCC
T ss_pred hhHhhCCcEEecCccccC------CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCCC
Confidence 346788888887653321 23459999999999999999999999999999999999999999999998765
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=7.4e-15 Score=110.95 Aligned_cols=51 Identities=33% Similarity=0.898 Sum_probs=46.7
Q ss_pred CCcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 330 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~s 330 (333)
...|+||++.|..+..+++|||+|+||..||.+||+.+++||+||+.|...
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 345999999999998899999999999999999999999999999998743
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=9.2e-15 Score=109.00 Aligned_cols=51 Identities=35% Similarity=0.894 Sum_probs=46.6
Q ss_pred CCcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 330 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~s 330 (333)
...|+||++.|..+..++++||+|+||..||.+||+.+.+||+||+.|...
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 345999999999888889999999999999999999999999999998754
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.53 E-value=3.2e-15 Score=106.65 Aligned_cols=48 Identities=38% Similarity=1.002 Sum_probs=44.6
Q ss_pred CcccccccccCCCCeeEEeC-CCCcccHHHHHHHHhcCCCCCCcccccc
Q 019980 281 FSCVICRLDYEDGETLTVLS-CKHSYHSECINNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LP-CgH~FH~~CI~~WL~~kksCPvCR~~V~ 328 (333)
..|+||++.|..+..++.+| |+|+||..||.+|++.+.+||+||+.|.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 34999999999988889998 9999999999999999999999999875
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=8.1e-15 Score=111.79 Aligned_cols=51 Identities=37% Similarity=0.995 Sum_probs=46.8
Q ss_pred CCcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 330 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~s 330 (333)
...|+||++.|..+..+++|+|+|+||..||.+||+.+.+||+||+.|...
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 455999999999988888999999999999999999999999999998754
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.46 E-value=3.5e-14 Score=101.04 Aligned_cols=48 Identities=35% Similarity=0.661 Sum_probs=42.3
Q ss_pred CcccccccccCCC-CeeEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 019980 281 FSCVICRLDYEDG-ETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 281 ~~C~ICLe~f~~g-d~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~ 328 (333)
..|+||++.|..+ ..+++++|+|+||..||.+||+.+.+||+||+.|.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 3499999999654 45778899999999999999999999999999885
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3e-14 Score=110.61 Aligned_cols=47 Identities=34% Similarity=0.931 Sum_probs=38.9
Q ss_pred ccccccccC-----------CCCeeEEeC-CCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 283 CVICRLDYE-----------DGETLTVLS-CKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 283 C~ICLe~f~-----------~gd~l~~LP-CgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
|+||++.|. .++.+++++ |+|+||..||.+||+.+++||+||+.+..
T Consensus 18 C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 18 CAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp BTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 777777664 445566665 99999999999999999999999999863
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1e-13 Score=102.41 Aligned_cols=50 Identities=28% Similarity=0.688 Sum_probs=43.2
Q ss_pred CCcccccccccCCC----CeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 280 GFSCVICRLDYEDG----ETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 280 ~~~C~ICLe~f~~g----d~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
...|+||++.|..+ ..+++++|+|+||..||..||+.+.+||+||+.|..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34599999998753 445788999999999999999999999999999864
No 10
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.42 E-value=1.4e-13 Score=112.09 Aligned_cols=49 Identities=20% Similarity=0.514 Sum_probs=40.5
Q ss_pred cccccccccCCCC---------------eeEEeCCCCcccHHHHHHHH-----hcCCCCCCccccccCC
Q 019980 282 SCVICRLDYEDGE---------------TLTVLSCKHSYHSECINNWL-----KINKVCPVCSAEVSTS 330 (333)
Q Consensus 282 ~C~ICLe~f~~gd---------------~l~~LPCgH~FH~~CI~~WL-----~~kksCPvCR~~V~~s 330 (333)
.|+||++.|..+. .+++++|+|+||..||.+|| +.+.+||+||+.+...
T Consensus 27 ~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp EETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred cCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3999999997653 34478899999999999999 4567999999988643
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.42 E-value=5.6e-14 Score=104.79 Aligned_cols=51 Identities=27% Similarity=0.675 Sum_probs=44.2
Q ss_pred CCcccccccccCCC----CeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 019980 280 GFSCVICRLDYEDG----ETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 330 (333)
Q Consensus 280 ~~~C~ICLe~f~~g----d~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~s 330 (333)
...|+||++.|..+ ..++.++|+|+||..||.+||+.+++||+||+.+...
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 34599999998753 5567889999999999999999999999999998754
No 12
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.40 E-value=1e-13 Score=101.02 Aligned_cols=50 Identities=28% Similarity=0.696 Sum_probs=43.6
Q ss_pred CcccccccccCCC----CeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 019980 281 FSCVICRLDYEDG----ETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 330 (333)
Q Consensus 281 ~~C~ICLe~f~~g----d~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~s 330 (333)
..|+||++.|..+ ..++.++|+|+||..||.+|++.+.+||+||+.+...
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 4599999998753 4557889999999999999999999999999998754
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.38 E-value=2.6e-13 Score=111.34 Aligned_cols=46 Identities=39% Similarity=0.802 Sum_probs=40.6
Q ss_pred ccccccccCCCC---------------eeEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 019980 283 CVICRLDYEDGE---------------TLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 283 C~ICLe~f~~gd---------------~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~ 328 (333)
|+||++.|..+. .++.++|+|.||..||.+||+.+.+||+||+.+.
T Consensus 40 CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 40 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 999999998541 3677899999999999999999999999999854
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.7e-13 Score=101.94 Aligned_cols=46 Identities=26% Similarity=0.564 Sum_probs=41.6
Q ss_pred CCcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~ 328 (333)
...|+||++.|..+ ++++|+|+||..||..||+.++.||+||+.|.
T Consensus 15 ~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 15 VPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp CCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 45699999998765 77899999999999999999999999999986
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.36 E-value=2.8e-13 Score=100.45 Aligned_cols=47 Identities=32% Similarity=0.772 Sum_probs=41.6
Q ss_pred CcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 281 FSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
..|+||++.+..+ ++.+||+|.||..||.+|++.+++||+||+.+..
T Consensus 6 ~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 6 ERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3499999998753 5788999999999999999999999999999864
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=9.1e-13 Score=99.29 Aligned_cols=49 Identities=27% Similarity=0.590 Sum_probs=41.9
Q ss_pred CCcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 330 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~s 330 (333)
...|+||++.|..+ +.+++|+|+||..||..||+.+..||+||+.|...
T Consensus 15 ~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 15 YILCSICKGYLIDA--TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GGSCTTTSSCCSSC--EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCChHHHCc--CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 45599999999875 33349999999999999999999999999998754
No 17
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=8e-13 Score=101.63 Aligned_cols=46 Identities=24% Similarity=0.725 Sum_probs=41.5
Q ss_pred CCcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~ 328 (333)
...|+||+..|..+ ++++|+|+||..||..|++....||+||+.+.
T Consensus 15 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 45699999999765 57899999999999999999999999999985
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=3.5e-13 Score=100.63 Aligned_cols=47 Identities=30% Similarity=0.845 Sum_probs=42.2
Q ss_pred CcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccCCC
Q 019980 281 FSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTSG 331 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~s~ 331 (333)
..|+||++.+.. +++||+|.||..||.+|++.+.+||+||+.|....
T Consensus 16 ~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 16 EECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 459999999876 78899999999999999999999999999987543
No 19
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.35 E-value=3.7e-13 Score=113.97 Aligned_cols=44 Identities=36% Similarity=1.004 Sum_probs=40.9
Q ss_pred ccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 283 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 283 C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
|+||++.|..+ +++||||.||..||..|+..+.+||+||+.|..
T Consensus 56 C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 56 CIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp CTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 99999999865 678999999999999999999999999999864
No 20
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=9.6e-13 Score=102.81 Aligned_cols=49 Identities=29% Similarity=0.758 Sum_probs=42.2
Q ss_pred CcccccccccCCCCeeEEeCCC-----CcccHHHHHHHHhcC--CCCCCccccccCC
Q 019980 281 FSCVICRLDYEDGETLTVLSCK-----HSYHSECINNWLKIN--KVCPVCSAEVSTS 330 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LPCg-----H~FH~~CI~~WL~~k--ksCPvCR~~V~~s 330 (333)
..|.||++.|..++.+ ++||+ |.||..||.+||..+ .+||+||+.+...
T Consensus 16 ~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 16 DICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 3499999999877766 58996 999999999999876 4899999998754
No 21
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=2.1e-12 Score=99.85 Aligned_cols=51 Identities=24% Similarity=0.608 Sum_probs=43.5
Q ss_pred CCcccccccccCCCCe-eEEeCCCCcccHHHHHHHHhcC---CCCCCccccccCC
Q 019980 280 GFSCVICRLDYEDGET-LTVLSCKHSYHSECINNWLKIN---KVCPVCSAEVSTS 330 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~-l~~LPCgH~FH~~CI~~WL~~k---ksCPvCR~~V~~s 330 (333)
...|+||++.|..... .++++|+|.||..||.+|++.+ ..||+||+.+...
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 4559999999987553 5778999999999999999876 7999999988643
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.30 E-value=2.3e-12 Score=97.82 Aligned_cols=48 Identities=31% Similarity=0.703 Sum_probs=41.6
Q ss_pred CCcccccccccCCCCeeEEeC-CCCcccHHHHHHHHhcC--CCCCCccccccCC
Q 019980 280 GFSCVICRLDYEDGETLTVLS-CKHSYHSECINNWLKIN--KVCPVCSAEVSTS 330 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LP-CgH~FH~~CI~~WL~~k--ksCPvCR~~V~~s 330 (333)
...|+||+..|..+ ++++ |+|+||..||..||+.+ ..||+||+.+...
T Consensus 15 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 15 ELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp GGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 45699999999876 6799 99999999999999866 6899999986543
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.6e-12 Score=97.51 Aligned_cols=49 Identities=22% Similarity=0.504 Sum_probs=41.5
Q ss_pred CCcccccccccCCCCeeEEeCCCCcccHHHHHHHHh---cCCCCCCccccccCCC
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHSYHSECINNWLK---INKVCPVCSAEVSTSG 331 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~---~kksCPvCR~~V~~s~ 331 (333)
...|+||++.|..+ ++++|+|.||..||..|++ .+..||+||+.+....
T Consensus 20 ~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 20 EVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 34599999999864 6779999999999999997 4568999999987653
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.4e-12 Score=96.49 Aligned_cols=48 Identities=19% Similarity=0.546 Sum_probs=41.2
Q ss_pred CCcccccccccCCCCeeEEeCCCCcccHHHHHHHHh-cCCCCCCccccccCC
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHSYHSECINNWLK-INKVCPVCSAEVSTS 330 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~-~kksCPvCR~~V~~s 330 (333)
...|+||+..+..+ ++++|+|+||..||.+|++ .+..||+||+.+...
T Consensus 15 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 15 KYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 45599999999876 4589999999999999994 567999999998754
No 25
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.27 E-value=1.5e-13 Score=114.81 Aligned_cols=47 Identities=38% Similarity=0.791 Sum_probs=0.0
Q ss_pred cccccccccCCCC---------------eeEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 019980 282 SCVICRLDYEDGE---------------TLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 282 ~C~ICLe~f~~gd---------------~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~ 328 (333)
.|+||++.|..+. .+..++|+|.||..||.+||+.+.+||+||+++.
T Consensus 50 ~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 50 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp --------------------------------------------------------------
T ss_pred cCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 3999999997532 2334589999999999999999999999999854
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.27 E-value=2.5e-12 Score=97.86 Aligned_cols=48 Identities=25% Similarity=0.515 Sum_probs=42.0
Q ss_pred CCcccccccccCCCCeeEEeCCCCcccHHHHHHHHhc-CCCCCCccccccCC
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI-NKVCPVCSAEVSTS 330 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~-kksCPvCR~~V~~s 330 (333)
...|+||+..|..+ ++++|||+||..||..||.. +.+||+||+.+...
T Consensus 8 ~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 8 YFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 34599999999876 67899999999999999987 78999999998643
No 27
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.26 E-value=4e-12 Score=97.14 Aligned_cols=48 Identities=25% Similarity=0.549 Sum_probs=41.9
Q ss_pred CCcccccccccCCCCeeEEeCCCCcccHHHHHHHHhc------CCCCCCccccccCC
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI------NKVCPVCSAEVSTS 330 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~------kksCPvCR~~V~~s 330 (333)
...|+||+..|..+ ++++|+|.||..||..|+.. ...||+||+.+...
T Consensus 19 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 19 EVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 34599999999876 57899999999999999987 67999999998753
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.25 E-value=2.4e-12 Score=103.33 Aligned_cols=46 Identities=28% Similarity=0.650 Sum_probs=40.0
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhcC-CCCCCccccccC
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN-KVCPVCSAEVST 329 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~k-ksCPvCR~~V~~ 329 (333)
.|+||+..|..+ +..++|+|.||..||.+|++.+ ..||+||+.+..
T Consensus 24 ~C~IC~~~~~~p--~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 24 RCFICMEKLRDA--RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp BCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCccCCccccCc--cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 499999999864 3338999999999999999988 699999999864
No 29
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.23 E-value=4.1e-12 Score=101.15 Aligned_cols=45 Identities=31% Similarity=0.783 Sum_probs=40.0
Q ss_pred cccccccccCCCCeeEEe-CCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 282 SCVICRLDYEDGETLTVL-SCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~L-PCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
.|+||+..|..+ +++ +|||.||..||..|+..+..||+||+.+..
T Consensus 24 ~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 24 RCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp BCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 499999999865 455 899999999999999999999999998864
No 30
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=4.7e-12 Score=96.71 Aligned_cols=47 Identities=28% Similarity=0.600 Sum_probs=41.3
Q ss_pred CcccccccccCCCCeeEEeCCCCcccHHHHHHHHhc------CCCCCCccccccCC
Q 019980 281 FSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI------NKVCPVCSAEVSTS 330 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~------kksCPvCR~~V~~s 330 (333)
..|+||+..|..+ ++++|+|+||..||..|+.. ...||+||+.+...
T Consensus 20 ~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 20 VTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 4599999999876 56799999999999999987 78999999998743
No 31
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.21 E-value=5.8e-12 Score=104.32 Aligned_cols=45 Identities=18% Similarity=0.584 Sum_probs=40.0
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCC-CCCCccccccC
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINK-VCPVCSAEVST 329 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kk-sCPvCR~~V~~ 329 (333)
.|+||+..|..+ +++||||.||..||..|+..+. .||+||+.+..
T Consensus 54 ~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 54 QCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp BCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 499999999866 6789999999999999998554 99999999975
No 32
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.21 E-value=6.6e-12 Score=101.63 Aligned_cols=48 Identities=33% Similarity=0.861 Sum_probs=41.2
Q ss_pred CcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 019980 281 FSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 330 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~s 330 (333)
..|+||+..|..+ +++++|||+||..||..|+..+..||+||+.+...
T Consensus 16 ~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 16 LMCVLCGGYFIDA--TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp TBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCCccCChHHhCc--CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 4499999999864 33349999999999999999999999999998753
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.21 E-value=2.1e-12 Score=98.07 Aligned_cols=47 Identities=32% Similarity=0.553 Sum_probs=41.1
Q ss_pred CCcccccccccCCCCeeEEeCCCCcccHHHHHHHHhc-------CCCCCCccccccC
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI-------NKVCPVCSAEVST 329 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~-------kksCPvCR~~V~~ 329 (333)
...|+||++.|..+ ++|+|+|.||..||..|+.. ...||+||+.+..
T Consensus 12 ~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 35599999999876 56899999999999999987 6789999999864
No 34
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.21 E-value=5.2e-12 Score=103.84 Aligned_cols=50 Identities=28% Similarity=0.696 Sum_probs=43.7
Q ss_pred CcccccccccCCC----CeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 019980 281 FSCVICRLDYEDG----ETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 330 (333)
Q Consensus 281 ~~C~ICLe~f~~g----d~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~s 330 (333)
..|+||++.|..+ ..++.++|||+||..||.+||+.+++||+||+.+...
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 4599999999754 4558899999999999999999999999999998753
No 35
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.3e-11 Score=90.42 Aligned_cols=41 Identities=24% Similarity=0.556 Sum_probs=35.9
Q ss_pred CCcccccccccCCCCeeEEeCCCCcccHHHHHHHHh---cCCCCCCc
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHSYHSECINNWLK---INKVCPVC 323 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~---~kksCPvC 323 (333)
...|+||++.|..+ ++++|+|+||..||.+|++ .+..||+|
T Consensus 20 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34599999999876 6779999999999999998 45689998
No 36
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.19 E-value=1.1e-11 Score=107.47 Aligned_cols=47 Identities=30% Similarity=0.697 Sum_probs=40.2
Q ss_pred CcccccccccCCCCeeEEeCCCCcccHHHHHHHHhc-CCCCCCccccccC
Q 019980 281 FSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI-NKVCPVCSAEVST 329 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~-kksCPvCR~~V~~ 329 (333)
..|+||+..|..+ +++++|+|.||..||..||.. +..||+||+.+..
T Consensus 55 ~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 4599999999864 444599999999999999997 7889999999853
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.18 E-value=2.5e-11 Score=95.12 Aligned_cols=46 Identities=33% Similarity=0.720 Sum_probs=40.4
Q ss_pred CCcccccccccCCCCeeEEeC-CCCcccHHHHHHHHhcC--CCCCCcccccc
Q 019980 280 GFSCVICRLDYEDGETLTVLS-CKHSYHSECINNWLKIN--KVCPVCSAEVS 328 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LP-CgH~FH~~CI~~WL~~k--ksCPvCR~~V~ 328 (333)
...|+||+..|..+ +++| |+|.||..||..|+..+ ..||+||+.+.
T Consensus 13 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 13 ELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 45699999999877 7889 99999999999999754 58999999974
No 38
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=1.3e-11 Score=91.02 Aligned_cols=50 Identities=24% Similarity=0.577 Sum_probs=40.5
Q ss_pred Cccccccc-ccCCCCe-eEEeCCCCcccHHHHHHHHhc-CCCCCCccccccCC
Q 019980 281 FSCVICRL-DYEDGET-LTVLSCKHSYHSECINNWLKI-NKVCPVCSAEVSTS 330 (333)
Q Consensus 281 ~~C~ICLe-~f~~gd~-l~~LPCgH~FH~~CI~~WL~~-kksCPvCR~~V~~s 330 (333)
..|+||++ .|..+.. ...++|||+||..||.+|+.. +..||+||+.+...
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 45999999 7766543 345799999999999999765 46899999998754
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=1.2e-11 Score=99.86 Aligned_cols=45 Identities=24% Similarity=0.650 Sum_probs=39.7
Q ss_pred ccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCC---CCCCccccccCC
Q 019980 283 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINK---VCPVCSAEVSTS 330 (333)
Q Consensus 283 C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kk---sCPvCR~~V~~s 330 (333)
|+||+..|..+ ++++|+|.||..||..|+..+. .||+||..+...
T Consensus 24 C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 24 CPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp CSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 99999999876 5689999999999999998764 899999998753
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.9e-11 Score=86.51 Aligned_cols=41 Identities=29% Similarity=0.859 Sum_probs=35.4
Q ss_pred CCcccccccccCCCCeeEEeCCCCcccHHHHHHHH---hcCCCCCCc
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHSYHSECINNWL---KINKVCPVC 323 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL---~~kksCPvC 323 (333)
...|+||++.|..+ ++|+|+|+||..||.+|+ +.+..||+|
T Consensus 15 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34599999999876 568999999999999995 456799998
No 41
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=6e-11 Score=91.63 Aligned_cols=48 Identities=23% Similarity=0.521 Sum_probs=40.5
Q ss_pred CCcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcC--CCCCCccccccC
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN--KVCPVCSAEVST 329 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~k--ksCPvCR~~V~~ 329 (333)
...|+||+..|..+. +...|+|.||..||.+||+++ .+||+||+.+..
T Consensus 15 i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 345999999998763 223799999999999999987 899999998763
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.13 E-value=2.6e-11 Score=104.62 Aligned_cols=46 Identities=22% Similarity=0.569 Sum_probs=40.7
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCC-CCCCccccccCC
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINK-VCPVCSAEVSTS 330 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kk-sCPvCR~~V~~s 330 (333)
.|+||+..|..+ +++||+|.||..||..|+.... .||+||..+...
T Consensus 80 ~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 80 MCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp BCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred EeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 499999999876 6689999999999999998765 899999998754
No 43
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.10 E-value=2.8e-11 Score=99.48 Aligned_cols=50 Identities=28% Similarity=0.696 Sum_probs=43.1
Q ss_pred CcccccccccCCC----CeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 019980 281 FSCVICRLDYEDG----ETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 330 (333)
Q Consensus 281 ~~C~ICLe~f~~g----d~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~s 330 (333)
..|+||++.|..+ ...+.++|+|+||..||.+||+.+++||+||+.|...
T Consensus 73 ~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4599999998753 3457889999999999999999999999999998753
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.10 E-value=1.5e-11 Score=100.50 Aligned_cols=46 Identities=26% Similarity=0.594 Sum_probs=40.5
Q ss_pred CCcccccccccCCCCeeEEeCCCCcccHHHHHHHHhc-CCCCCCcccccc
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI-NKVCPVCSAEVS 328 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~-kksCPvCR~~V~ 328 (333)
...|+||+..|..+ ++|+|+|.||..||..|+.. +..||+||+.+.
T Consensus 15 ~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 34599999999876 67899999999999999976 678999999875
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.07 E-value=4.2e-11 Score=98.55 Aligned_cols=46 Identities=22% Similarity=0.566 Sum_probs=40.8
Q ss_pred CcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCC-CCCCccccccC
Q 019980 281 FSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINK-VCPVCSAEVST 329 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kk-sCPvCR~~V~~ 329 (333)
..|+||+..|..+ ++++|+|+||..||..|++.+. +||+||+.+..
T Consensus 19 ~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 19 YECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 4599999999876 6789999999999999998765 99999999865
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.06 E-value=6.4e-11 Score=96.79 Aligned_cols=46 Identities=35% Similarity=0.656 Sum_probs=40.5
Q ss_pred CcccccccccCCCCeeEEeCCCCcccHHHHHHHHhc-CCCCCCccccccC
Q 019980 281 FSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI-NKVCPVCSAEVST 329 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~-kksCPvCR~~V~~ 329 (333)
..|+||+..|..+ +.++|||+||..||..|+.. ...||+||+.+..
T Consensus 24 ~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 24 ISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp TBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 3499999999865 56899999999999999987 6799999999864
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.06 E-value=8.4e-11 Score=92.14 Aligned_cols=47 Identities=13% Similarity=0.022 Sum_probs=42.8
Q ss_pred CCcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
.+.|+||+..|..+ ++++|||+|+..||.+||..+.+||+||..+..
T Consensus 14 ~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 14 EFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred heECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 45699999999988 788999999999999999988999999998864
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.04 E-value=1e-10 Score=94.61 Aligned_cols=48 Identities=15% Similarity=0.044 Sum_probs=43.5
Q ss_pred CCcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 330 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~s 330 (333)
.+.|+||+..|..+ +++||||+|+..||.+||..+.+||+||..+...
T Consensus 29 ~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 29 EFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp TTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred hhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 45699999999988 7889999999999999999889999999998753
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.01 E-value=1.8e-10 Score=92.79 Aligned_cols=48 Identities=17% Similarity=0.115 Sum_probs=43.3
Q ss_pred CCcccccccccCCCCeeEEeCCC-CcccHHHHHHHHhcCCCCCCccccccCC
Q 019980 280 GFSCVICRLDYEDGETLTVLSCK-HSYHSECINNWLKINKVCPVCSAEVSTS 330 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCg-H~FH~~CI~~WL~~kksCPvCR~~V~~s 330 (333)
.+.|+||++.|..+ ++++|| |+|+..||.+||..+.+||+||..+...
T Consensus 22 ~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 22 EFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp TTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred hcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 45699999999988 788999 9999999999999889999999998643
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.95 E-value=3.2e-10 Score=111.90 Aligned_cols=46 Identities=26% Similarity=0.700 Sum_probs=40.8
Q ss_pred CcccccccccCCCCeeEEeCCCCcccHHHHHHHHh-cCCCCCCccccccC
Q 019980 281 FSCVICRLDYEDGETLTVLSCKHSYHSECINNWLK-INKVCPVCSAEVST 329 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~-~kksCPvCR~~V~~ 329 (333)
..|+||++.+..+ +.+||||.||..||..|+. .+..||+||+.+..
T Consensus 333 ~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 333 QLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 4599999998654 7899999999999999998 78899999998863
No 51
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=1.4e-10 Score=95.37 Aligned_cols=43 Identities=26% Similarity=0.664 Sum_probs=38.3
Q ss_pred cccccccccCCCCeeEEe-CCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 282 SCVICRLDYEDGETLTVL-SCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~L-PCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
.|+||+..|..+ +++ +|||+||..||..|+. ..||+||+.+..
T Consensus 24 ~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 24 RCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp SCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred CCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 399999999876 566 9999999999999988 889999999854
No 52
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.93 E-value=4.6e-10 Score=87.03 Aligned_cols=51 Identities=18% Similarity=0.349 Sum_probs=38.9
Q ss_pred CCcccccccccCCCCee-EEeCCCCcccHHHHHHHHh-cCCCCCCccccccCC
Q 019980 280 GFSCVICRLDYEDGETL-TVLSCKHSYHSECINNWLK-INKVCPVCSAEVSTS 330 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l-~~LPCgH~FH~~CI~~WL~-~kksCPvCR~~V~~s 330 (333)
...|+||++.+...+.. ..++|||.||..||..|+. ....||+||+.+...
T Consensus 11 ~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred CCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 34599999988643322 2235999999999999874 457899999998754
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.93 E-value=1.7e-10 Score=98.55 Aligned_cols=45 Identities=27% Similarity=0.526 Sum_probs=39.7
Q ss_pred CcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCC-CCCCcccccc
Q 019980 281 FSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINK-VCPVCSAEVS 328 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kk-sCPvCR~~V~ 328 (333)
..|+||+..|..+ ++++|||+||..||.+|++..+ .||+||+.+.
T Consensus 32 ~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 32 YLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 4599999999877 6689999999999999998665 8999999764
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.93 E-value=1.6e-10 Score=83.38 Aligned_cols=46 Identities=24% Similarity=0.573 Sum_probs=39.3
Q ss_pred CCcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccCCC
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTSG 331 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~s~ 331 (333)
...|+||+..|..+ ++|||+|.||..||..| +..||+||+.+....
T Consensus 6 ~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 6 FLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred CCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 45599999999876 77899999999999884 678999999987543
No 55
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.93 E-value=3.6e-10 Score=103.63 Aligned_cols=47 Identities=13% Similarity=0.107 Sum_probs=41.3
Q ss_pred CCcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcC-CCCCCccccccC
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN-KVCPVCSAEVST 329 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~k-ksCPvCR~~V~~ 329 (333)
...|+||++.|..+ +++||||+||..||.+||..+ .+||+||..+..
T Consensus 208 ~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 208 YLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp TTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred ccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 45699999999988 789999999999999999864 459999999864
No 56
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.91 E-value=4.6e-10 Score=83.42 Aligned_cols=44 Identities=32% Similarity=0.658 Sum_probs=38.3
Q ss_pred cccccccccCCCCeeEEe--CCCCc-ccHHHHHHHHhcCCCCCCcccccc
Q 019980 282 SCVICRLDYEDGETLTVL--SCKHS-YHSECINNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~L--PCgH~-FH~~CI~~WL~~kksCPvCR~~V~ 328 (333)
.|+||++.+... +.+ ||||. |+..|+..|++.++.||+||+.|.
T Consensus 10 ~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 10 PCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp CCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 499999987654 444 99999 899999999999999999999885
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.87 E-value=5.6e-10 Score=84.96 Aligned_cols=41 Identities=22% Similarity=0.508 Sum_probs=36.2
Q ss_pred cccccccccCCCCeeEEeCCCCc-ccHHHHHHHHhcCCCCCCccccccC
Q 019980 282 SCVICRLDYEDGETLTVLSCKHS-YHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~-FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
.|+||++.+... +.+||+|. ||..||..| +.||+||+.|..
T Consensus 26 ~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 26 LCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp BCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 399999988764 77899999 999999999 889999998863
No 58
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.85 E-value=1e-09 Score=81.28 Aligned_cols=45 Identities=24% Similarity=0.605 Sum_probs=38.4
Q ss_pred CcccccccccCCCCeeEEe--CCCCc-ccHHHHHHHHhcCCCCCCcccccc
Q 019980 281 FSCVICRLDYEDGETLTVL--SCKHS-YHSECINNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~L--PCgH~-FH~~CI~~WL~~kksCPvCR~~V~ 328 (333)
..|+||++.+... ..+ ||||. |+..|+..|.+.++.||+||+.|.
T Consensus 8 ~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 8 KPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp SBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3499999986543 344 99998 999999999988899999999985
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=1.2e-09 Score=86.80 Aligned_cols=44 Identities=27% Similarity=0.668 Sum_probs=38.0
Q ss_pred CCcccccccccCCCCeeEEeC-CCCcccHHHHHHHHhcC------CCCCC--cccc
Q 019980 280 GFSCVICRLDYEDGETLTVLS-CKHSYHSECINNWLKIN------KVCPV--CSAE 326 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LP-CgH~FH~~CI~~WL~~k------ksCPv--CR~~ 326 (333)
.+.|+||+..|..+ ++++ |||+|+..||.+||..+ .+||+ |++.
T Consensus 7 ~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred EeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 45599999999987 6776 99999999999999764 48999 9866
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.80 E-value=1.7e-09 Score=93.84 Aligned_cols=47 Identities=21% Similarity=0.546 Sum_probs=40.8
Q ss_pred CCcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCC-CCCCccccccC
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINK-VCPVCSAEVST 329 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kk-sCPvCR~~V~~ 329 (333)
...|+||+..|..+ ++++|||+||..||.+||..++ +||+||..|..
T Consensus 18 ~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 18 KYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 34599999999876 6689999999999999998654 99999999864
No 61
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.79 E-value=1.3e-09 Score=105.88 Aligned_cols=51 Identities=33% Similarity=0.707 Sum_probs=39.9
Q ss_pred CCcccccccccCCCCeeE-----EeCCCCcccHHHHHHHHhcC-----------CCCCCccccccCC
Q 019980 280 GFSCVICRLDYEDGETLT-----VLSCKHSYHSECINNWLKIN-----------KVCPVCSAEVSTS 330 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~-----~LPCgH~FH~~CI~~WL~~k-----------ksCPvCR~~V~~s 330 (333)
...|+||++.+..+..+. ..+|+|.||..||.+||+.. +.||+||++|+.+
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 445999999998733332 23599999999999999753 4799999998754
No 62
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.74 E-value=4.7e-09 Score=93.54 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=40.9
Q ss_pred CCcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcC-CCCCCccccccC
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN-KVCPVCSAEVST 329 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~k-ksCPvCR~~V~~ 329 (333)
.+.|+||+..|..+ +++||||+|+..||..||..+ .+||+||..+..
T Consensus 106 ~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 106 YLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred hhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 34599999999987 778999999999999999874 469999998864
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=5e-09 Score=79.66 Aligned_cols=41 Identities=22% Similarity=0.529 Sum_probs=34.9
Q ss_pred ccccccccCCCCeeEEeCCCCc-ccHHHHHHHHhcCCCCCCccccccCC
Q 019980 283 CVICRLDYEDGETLTVLSCKHS-YHSECINNWLKINKVCPVCSAEVSTS 330 (333)
Q Consensus 283 C~ICLe~f~~gd~l~~LPCgH~-FH~~CI~~WL~~kksCPvCR~~V~~s 330 (333)
|+||+..+... +.+||+|. ||..|+.. .+.||+||+.|...
T Consensus 28 C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 28 CKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp CSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 99999998764 67899999 99999964 37899999998653
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.60 E-value=2.6e-08 Score=73.50 Aligned_cols=47 Identities=28% Similarity=0.687 Sum_probs=36.5
Q ss_pred CCcccccccccCCCCeeEEeCCC--C---cccHHHHHHHHhc--CCCCCCccccccC
Q 019980 280 GFSCVICRLDYEDGETLTVLSCK--H---SYHSECINNWLKI--NKVCPVCSAEVST 329 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCg--H---~FH~~CI~~WL~~--kksCPvCR~~V~~ 329 (333)
...|.||+.... +.+ ++||. | .||..||.+||.. +.+||+||..+..
T Consensus 6 ~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 6 VPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 345999999843 334 68854 4 8999999999975 5789999998753
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=3.5e-08 Score=74.21 Aligned_cols=43 Identities=26% Similarity=0.713 Sum_probs=35.9
Q ss_pred CCcccccccccCCCCeeEEeCCCCc-ccHHHHHHHHhcCCCCCCccccccC
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHS-YHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~-FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
...|+||++.+.. ++.+||+|. ||..|+.. .+.||+||+.|..
T Consensus 15 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 15 SKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp SSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 4559999998765 478899999 99999983 4789999998864
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.57 E-value=1.3e-08 Score=80.29 Aligned_cols=46 Identities=20% Similarity=0.632 Sum_probs=38.1
Q ss_pred CcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcC--------CCCCC--cccc
Q 019980 281 FSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN--------KVCPV--CSAE 326 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~k--------ksCPv--CR~~ 326 (333)
..|+||++.+..+..+..++|+|.||..||..++..+ ..||. |+..
T Consensus 6 ~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred cCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3499999999877655556899999999999999642 37999 9988
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.57 E-value=1.5e-08 Score=78.34 Aligned_cols=39 Identities=28% Similarity=0.773 Sum_probs=34.3
Q ss_pred ccccccccCCCCeeEEeCCCCc-ccHHHHHHHHhcCCCCCCcccccc
Q 019980 283 CVICRLDYEDGETLTVLSCKHS-YHSECINNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 283 C~ICLe~f~~gd~l~~LPCgH~-FH~~CI~~WL~~kksCPvCR~~V~ 328 (333)
|+||++.+... +.+||||. ||..|+..| ..||+||+.|.
T Consensus 21 C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 21 CMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp CTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred eEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 99999987654 78899999 999999887 48999999875
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.55 E-value=2.8e-08 Score=73.53 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=40.8
Q ss_pred CcccccccccCCCCeeEEe-CCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 281 FSCVICRLDYEDGETLTVL-SCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~L-PCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
..|+||++.+..+ +++ +|||+|.+.||.+||+.+++||+++..+..
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 3499999999976 566 899999999999999988899999998864
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.51 E-value=3.4e-08 Score=92.84 Aligned_cols=49 Identities=33% Similarity=0.633 Sum_probs=41.0
Q ss_pred CCCcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcC--CCCCC--ccccccC
Q 019980 279 LGFSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN--KVCPV--CSAEVST 329 (333)
Q Consensus 279 ~~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~k--ksCPv--CR~~V~~ 329 (333)
....|+||+..|..+ ++.+.|||+|+..||..|+..+ ..||+ ||+.+..
T Consensus 180 ~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 467799999999876 4445899999999999999764 47999 9998753
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.44 E-value=3.2e-08 Score=96.25 Aligned_cols=43 Identities=21% Similarity=0.564 Sum_probs=37.3
Q ss_pred CCcccccccccCCCCeeEEeCCCCc-ccHHHHHHHHhcCCCCCCccccccC
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHS-YHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~-FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
...|+||++.+... +.+||||. ||..||..| ..||+||..|..
T Consensus 295 ~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 34599999998765 77899999 999999988 789999998863
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.18 E-value=1.1e-06 Score=71.26 Aligned_cols=45 Identities=31% Similarity=0.589 Sum_probs=38.3
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhc-CCCCCCcccccc
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI-NKVCPVCSAEVS 328 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~-kksCPvCR~~V~ 328 (333)
.|.+|--+|.. ..+.+||+|+||..|+..|.++ .++||+|+..|.
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 38999888763 4688999999999999999854 589999999875
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.05 E-value=2.5e-06 Score=78.84 Aligned_cols=46 Identities=24% Similarity=0.538 Sum_probs=38.9
Q ss_pred CcccccccccCCCCeeEEeC-CCCcccHHHHHHHHhcCC--CCCCccccccC
Q 019980 281 FSCVICRLDYEDGETLTVLS-CKHSYHSECINNWLKINK--VCPVCSAEVST 329 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LP-CgH~FH~~CI~~WL~~kk--sCPvCR~~V~~ 329 (333)
..|.||..-+..| .+.+ |+|.||..|+.+|++.+. .||.|+...+.
T Consensus 181 ~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 181 KICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 3499999999987 4444 999999999999998754 99999998764
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.58 E-value=0.00063 Score=54.57 Aligned_cols=44 Identities=25% Similarity=0.752 Sum_probs=37.3
Q ss_pred cccccccccCCCCeeEEeCC-CCcccHHHHHHHHhcCCCCCCccccccCC
Q 019980 282 SCVICRLDYEDGETLTVLSC-KHSYHSECINNWLKINKVCPVCSAEVSTS 330 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPC-gH~FH~~CI~~WL~~kksCPvCR~~V~~s 330 (333)
.|-.||-.++ + .+.| .|.+|..||.-.|.++..||+|++.|++.
T Consensus 30 nCKsCWf~~k-~----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 30 FCKSCWFENK-G----LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCSSCSCCS-S----EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred cChhhccccC-C----eeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 3999998865 2 4445 79999999999999999999999999864
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.98 E-value=0.022 Score=42.44 Aligned_cols=45 Identities=22% Similarity=0.472 Sum_probs=32.5
Q ss_pred CcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCC----CCCCcccccc
Q 019980 281 FSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINK----VCPVCSAEVS 328 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kk----sCPvCR~~V~ 328 (333)
..|.||.. .++.+..-.|...||..|+.+.|.... .||.|+....
T Consensus 13 ~~C~vC~~---~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 13 ARCGVCGD---GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CCCTTTSC---CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCcCCCCC---CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 34999974 343333334999999999999886542 7999987654
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.08 E-value=0.022 Score=44.62 Aligned_cols=34 Identities=26% Similarity=0.590 Sum_probs=25.8
Q ss_pred CcccccccccCCCCeeEEeCCCCcccHHHHHH-HH
Q 019980 281 FSCVICRLDYEDGETLTVLSCKHSYHSECINN-WL 314 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~-WL 314 (333)
..|.||+..|...-....++|+|.||..||.. |.
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 45999998754433344589999999999998 53
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=92.25 E-value=0.079 Score=41.69 Aligned_cols=31 Identities=16% Similarity=0.602 Sum_probs=21.7
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHH
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNW 313 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~W 313 (333)
.|.||- .|.....+..--|+-+||..|+.+-
T Consensus 17 ~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 17 MCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred ccCccc-cccccceeccccccccccHhhcccc
Confidence 399994 3444433333348999999999996
No 77
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=90.71 E-value=0.097 Score=36.38 Aligned_cols=43 Identities=28% Similarity=0.635 Sum_probs=29.4
Q ss_pred ccccccccCCCCeeEEeCCCCcccHHHHHHHHhcC----CCCCCccc
Q 019980 283 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN----KVCPVCSA 325 (333)
Q Consensus 283 C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~k----ksCPvCR~ 325 (333)
|.||...-..+..+..-.|...||..|+.+=|... -.||.|+.
T Consensus 3 C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 99998764433333333599999999997655432 26999975
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=90.33 E-value=0.11 Score=37.77 Aligned_cols=43 Identities=28% Similarity=0.690 Sum_probs=30.0
Q ss_pred CcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcC----CCCCCcccc
Q 019980 281 FSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN----KVCPVCSAE 326 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~k----ksCPvCR~~ 326 (333)
..|.||... ++.+..-.|...||..||.+-|... -.||.|++.
T Consensus 12 ~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 12 DYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 349999863 3333333599999999999865432 379999864
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=89.46 E-value=0.12 Score=38.79 Aligned_cols=49 Identities=20% Similarity=0.537 Sum_probs=34.2
Q ss_pred CcccccccccCCCCeeEEe-CCCCcccHHHHHHHHhc----CCCCCCccccccCC
Q 019980 281 FSCVICRLDYEDGETLTVL-SCKHSYHSECINNWLKI----NKVCPVCSAEVSTS 330 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~L-PCgH~FH~~CI~~WL~~----kksCPvCR~~V~~s 330 (333)
..|.||..... +...+.. .|..-||..||..-+.. .-.||.|+..+...
T Consensus 19 ~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 19 WICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp ECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred cCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 34999988764 3333333 49999999999765532 34799999887644
No 80
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=88.67 E-value=0.083 Score=38.41 Aligned_cols=50 Identities=22% Similarity=0.462 Sum_probs=33.9
Q ss_pred CCcccccccccCCCC-eeEEeCCCCcccHHHHHHHHh-----cCCCCCCccccccC
Q 019980 280 GFSCVICRLDYEDGE-TLTVLSCKHSYHSECINNWLK-----INKVCPVCSAEVST 329 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd-~l~~LPCgH~FH~~CI~~WL~-----~kksCPvCR~~V~~ 329 (333)
...|+||...+..+. .+..-.|..=||..|+.--.. ..-.||.|+..-..
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~ 61 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGP 61 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred CCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCCC
Confidence 344999999986443 333335999999999854322 34589999865443
No 81
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=87.12 E-value=0.37 Score=36.19 Aligned_cols=50 Identities=22% Similarity=0.540 Sum_probs=34.2
Q ss_pred CcccccccccCCCCeeEEeCCCCcccHHHHHHHH---------hcCCCCCCccccccCCC
Q 019980 281 FSCVICRLDYEDGETLTVLSCKHSYHSECINNWL---------KINKVCPVCSAEVSTSG 331 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL---------~~kksCPvCR~~V~~s~ 331 (333)
..| ||...+..+..+..-.|..=||..|+.--. .....||.|+..-.+++
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p~~ 75 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGPSS 75 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCSSC
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCcCC
Confidence 447 899887654444444599999999984211 24678999987765543
No 82
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=86.62 E-value=0.44 Score=51.87 Aligned_cols=47 Identities=13% Similarity=0.095 Sum_probs=41.7
Q ss_pred CCcccccccccCCCCeeEEeCCC-CcccHHHHHHHHhcCCCCCCccccccC
Q 019980 280 GFSCVICRLDYEDGETLTVLSCK-HSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCg-H~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
.+.|+|-++-+..+ +++|.| ++|-+.+|.+||..+.+||+=|.++..
T Consensus 891 ~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 891 EFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp GGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred HhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 46699999999988 789997 689999999999999999999988763
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=85.07 E-value=0.13 Score=37.40 Aligned_cols=45 Identities=33% Similarity=0.651 Sum_probs=30.6
Q ss_pred CcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcC----CCCCCcccccc
Q 019980 281 FSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN----KVCPVCSAEVS 328 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~k----ksCPvCR~~V~ 328 (333)
..|.||.. .++.+..-.|...||..||.+-|... -.||.|+....
T Consensus 10 ~~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 10 EFCRVCKD---GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SSCTTTCC---CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CcCCCCCC---CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 34999975 23333333499999999998755432 26999987654
No 84
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=83.51 E-value=0.22 Score=39.57 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=30.9
Q ss_pred CcccccccccCCCCeeEEeCCCCcccHHHHHHHHhc---CCCCCCcccc
Q 019980 281 FSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI---NKVCPVCSAE 326 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~---kksCPvCR~~ 326 (333)
..| ||......+..+..-.|..-||..|+..=+.. .-.||.|+..
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 347 89887766644433359999999999763322 2489999743
No 85
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=82.33 E-value=0.2 Score=40.35 Aligned_cols=48 Identities=23% Similarity=0.484 Sum_probs=33.7
Q ss_pred cccccccccCCCCeeEEe--CCCCcccHHHHHHHH----h------cCCCCCCccccccC
Q 019980 282 SCVICRLDYEDGETLTVL--SCKHSYHSECINNWL----K------INKVCPVCSAEVST 329 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~L--PCgH~FH~~CI~~WL----~------~kksCPvCR~~V~~ 329 (333)
.|.||...|......+.. .|..=||..|+.--. . .+-.||.|+.....
T Consensus 5 ~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 5 PCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp BCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred CCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 499999998665444444 489999999974211 0 34589999876554
No 86
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=82.29 E-value=0.31 Score=39.38 Aligned_cols=43 Identities=26% Similarity=0.662 Sum_probs=29.1
Q ss_pred ccccccccCCCCeeEEe-CCCCcccHHHHHHHHhcC----CCCCCccc
Q 019980 283 CVICRLDYEDGETLTVL-SCKHSYHSECINNWLKIN----KVCPVCSA 325 (333)
Q Consensus 283 C~ICLe~f~~gd~l~~L-PCgH~FH~~CI~~WL~~k----ksCPvCR~ 325 (333)
|.||...-.....+... .|...||..|+.+-|... =.||.|+.
T Consensus 64 C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 64 CSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp BTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred cccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 88887653232333333 499999999998766433 27999985
No 87
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=81.88 E-value=0.7 Score=35.01 Aligned_cols=51 Identities=18% Similarity=0.348 Sum_probs=34.4
Q ss_pred CCcccccccccCCCCeeEEe--CCCCcccHHHHHHHH---------hcCCCCCCccccccCCC
Q 019980 280 GFSCVICRLDYEDGETLTVL--SCKHSYHSECINNWL---------KINKVCPVCSAEVSTSG 331 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~L--PCgH~FH~~CI~~WL---------~~kksCPvCR~~V~~s~ 331 (333)
...| ||......+..+..= .|..=||..|+.--- ..+-.||.|+..-...+
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~~s 77 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPSS 77 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSCCC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCCCC
Confidence 3448 798886566555444 599999999985321 13458999987665443
No 88
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=81.87 E-value=1 Score=44.07 Aligned_cols=48 Identities=19% Similarity=0.371 Sum_probs=31.7
Q ss_pred CCcccccccccCCCCeeEEeCCCCc--ccHHHHHHHHhcC--CCCCCccccccC
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHS--YHSECINNWLKIN--KVCPVCSAEVST 329 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~--FH~~CI~~WL~~k--ksCPvCR~~V~~ 329 (333)
.+.|+|-+..+..+ ++-..|.|. |-..-+.....++ -.||+|.+.+..
T Consensus 249 SL~CPlS~~ri~~P--vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 249 SLQCPISYTRMKYP--SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp ESBCTTTSSBCSSE--EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred eecCCCcccccccc--CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 46699988887765 667789998 4333333332222 479999988753
No 89
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.80 E-value=0.14 Score=36.44 Aligned_cols=41 Identities=34% Similarity=0.824 Sum_probs=28.2
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhcC----CCCCCccc
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN----KVCPVCSA 325 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~k----ksCPvCR~ 325 (333)
.|.||... +..+..-.|...||..|+.+-|... -.||.|+.
T Consensus 11 ~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 11 FCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 49999864 3333333499999999998765432 25888864
No 90
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.90 E-value=0.89 Score=35.90 Aligned_cols=46 Identities=28% Similarity=0.626 Sum_probs=29.4
Q ss_pred CCcccccccccCCCCeeEEeC--CC-CcccHHHHHHHHhc----CCCCCCccccccC
Q 019980 280 GFSCVICRLDYEDGETLTVLS--CK-HSYHSECINNWLKI----NKVCPVCSAEVST 329 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LP--Cg-H~FH~~CI~~WL~~----kksCPvCR~~V~~ 329 (333)
...| ||..... +..+..=. |. .-||..||. |.. +-.||.|+.....
T Consensus 36 ~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~k 88 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGP 88 (91)
T ss_dssp CBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCSS
T ss_pred CcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCCc
Confidence 3447 9988753 43332223 55 579999997 433 2479999876543
No 91
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=80.79 E-value=0.099 Score=37.73 Aligned_cols=44 Identities=32% Similarity=0.777 Sum_probs=30.5
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhcC----CCCCCcccccc
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN----KVCPVCSAEVS 328 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~k----ksCPvCR~~V~ 328 (333)
.|.||... +..+..-.|...||..|+.+-|... -.||.|+....
T Consensus 7 ~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 7 FCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp SCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 49999864 4333333599999999998755432 26999976654
No 92
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=80.34 E-value=1.3 Score=43.24 Aligned_cols=48 Identities=15% Similarity=0.422 Sum_probs=32.3
Q ss_pred CCcccccccccCCCCeeEEeCCCCc--ccHHHHHHHHhcC--CCCCCccccccC
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHS--YHSECINNWLKIN--KVCPVCSAEVST 329 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~--FH~~CI~~WL~~k--ksCPvCR~~V~~ 329 (333)
.+.|+|-+..+..+ ++-..|.|. |-..-+.....++ -.||+|.+.+..
T Consensus 215 SL~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 215 SLMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp ESBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 45699988888765 666779998 5443333333333 479999998753
No 93
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=79.57 E-value=2.2 Score=34.26 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=20.5
Q ss_pred cccccccccC-----CCCeeEEe-CCCCcccHHHHH
Q 019980 282 SCVICRLDYE-----DGETLTVL-SCKHSYHSECIN 311 (333)
Q Consensus 282 ~C~ICLe~f~-----~gd~l~~L-PCgH~FH~~CI~ 311 (333)
.|.||+..-. .++.++.- .|+..||..||.
T Consensus 7 ~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 7 ICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp SBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 3999987531 22234333 599999999995
No 94
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=79.45 E-value=0.31 Score=36.33 Aligned_cols=51 Identities=25% Similarity=0.411 Sum_probs=34.5
Q ss_pred CCcccccccccCCCC-eeEEeCCCCcccHHHHHHHH----hcCCCCCCccccccCCC
Q 019980 280 GFSCVICRLDYEDGE-TLTVLSCKHSYHSECINNWL----KINKVCPVCSAEVSTSG 331 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd-~l~~LPCgH~FH~~CI~~WL----~~kksCPvCR~~V~~s~ 331 (333)
...| ||...+..+. .+..-.|..=||..|+.--. ..+..||.|+..-.+++
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~pss 71 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGPSS 71 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSSCC
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCCCC
Confidence 3458 7988876664 33333598899999985432 23458999988766654
No 95
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=79.29 E-value=0.63 Score=36.26 Aligned_cols=49 Identities=18% Similarity=0.369 Sum_probs=31.4
Q ss_pred CCccccccccc-CCCCeeEEe-CCCCcccHHHHHHHHhc--CCCCCCcccccc
Q 019980 280 GFSCVICRLDY-EDGETLTVL-SCKHSYHSECINNWLKI--NKVCPVCSAEVS 328 (333)
Q Consensus 280 ~~~C~ICLe~f-~~gd~l~~L-PCgH~FH~~CI~~WL~~--kksCPvCR~~V~ 328 (333)
...|.||...- .....++.. .|.-.||..|+..-+.- .-.||.|+....
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 34599998763 222233333 49999999999764321 236999976544
No 96
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=78.90 E-value=0.22 Score=36.65 Aligned_cols=44 Identities=25% Similarity=0.610 Sum_probs=29.9
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhcC----CCCCCcccccc
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN----KVCPVCSAEVS 328 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~k----ksCPvCR~~V~ 328 (333)
.|.||... ++.+..-.|...||..||.+-|... -.||.|+..-.
T Consensus 10 ~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 10 ECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp SBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred CCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCccc
Confidence 49999863 3333333499999999998755432 26999976543
No 97
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=78.32 E-value=0.58 Score=37.42 Aligned_cols=34 Identities=18% Similarity=0.516 Sum_probs=23.9
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHh
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLK 315 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~ 315 (333)
.|.||...-...+.+.--.|...||..||..++.
T Consensus 9 ~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 9 NCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 3999987643222233345999999999988764
No 98
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=77.86 E-value=1.9 Score=32.20 Aligned_cols=45 Identities=29% Similarity=0.640 Sum_probs=28.6
Q ss_pred CCcccccccccCCCCeeEEeC--CC-CcccHHHHHHHHhc----CCCCCCcccccc
Q 019980 280 GFSCVICRLDYEDGETLTVLS--CK-HSYHSECINNWLKI----NKVCPVCSAEVS 328 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LP--Cg-H~FH~~CI~~WL~~----kksCPvCR~~V~ 328 (333)
...| ||..... +..+..=. |. .-||..||. |.. +-.||.|+....
T Consensus 16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 3447 8988653 43222223 65 689999997 433 237999987654
No 99
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.46 E-value=1.7 Score=32.81 Aligned_cols=45 Identities=24% Similarity=0.507 Sum_probs=30.4
Q ss_pred cccccccccCC-CCeeEEeCCCCcccHHHHHHHHh-----cCCCCCCccccc
Q 019980 282 SCVICRLDYED-GETLTVLSCKHSYHSECINNWLK-----INKVCPVCSAEV 327 (333)
Q Consensus 282 ~C~ICLe~f~~-gd~l~~LPCgH~FH~~CI~~WL~-----~kksCPvCR~~V 327 (333)
.| ||...+.. +..+..-.|..=||..||.--.. ....||.|+...
T Consensus 14 ~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 14 YC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred EE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 36 99998863 33343345999999999842221 345899998764
No 100
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=77.34 E-value=0.38 Score=35.97 Aligned_cols=43 Identities=21% Similarity=0.578 Sum_probs=27.2
Q ss_pred ccccccccCCCCeeEEe-CCCCcccHHHHHHHHhc-----CCCCCCcccc
Q 019980 283 CVICRLDYEDGETLTVL-SCKHSYHSECINNWLKI-----NKVCPVCSAE 326 (333)
Q Consensus 283 C~ICLe~f~~gd~l~~L-PCgH~FH~~CI~~WL~~-----kksCPvCR~~ 326 (333)
|.||...-..+ .++.- .|...||..||.+=|.. .=.||.|+..
T Consensus 21 C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 21 CHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp BTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 56776543233 23333 49999999999865542 2279999753
No 101
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=77.32 E-value=0.19 Score=36.56 Aligned_cols=48 Identities=23% Similarity=0.654 Sum_probs=32.0
Q ss_pred cccccccccCC-CCeeEEe-CCCCcccHHHHHHHHh-------cCCCCCCccccccC
Q 019980 282 SCVICRLDYED-GETLTVL-SCKHSYHSECINNWLK-------INKVCPVCSAEVST 329 (333)
Q Consensus 282 ~C~ICLe~f~~-gd~l~~L-PCgH~FH~~CI~~WL~-------~kksCPvCR~~V~~ 329 (333)
.|.||...... ...++.. .|...||..|+.+-|. ..-.||.|+....+
T Consensus 8 ~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~ 64 (66)
T 2yt5_A 8 VCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTT 64 (66)
T ss_dssp CBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSC
T ss_pred CCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcccc
Confidence 49999987543 2233333 4999999999986442 12379999876543
No 102
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.21 E-value=0.42 Score=36.46 Aligned_cols=44 Identities=32% Similarity=0.599 Sum_probs=28.6
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhc-----CCCCCCccc
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI-----NKVCPVCSA 325 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~-----kksCPvCR~ 325 (333)
.|.||...-..+..+.-=.|...||..||.+=|.. .=.||.|+.
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 37888765333333322259999999999865532 226999975
No 103
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=77.01 E-value=0.5 Score=40.55 Aligned_cols=45 Identities=24% Similarity=0.640 Sum_probs=30.3
Q ss_pred CcccccccccCCCCeeEEe-CCCCcccHHHHHHHH-----hcCCCCCCcccc
Q 019980 281 FSCVICRLDYEDGETLTVL-SCKHSYHSECINNWL-----KINKVCPVCSAE 326 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~L-PCgH~FH~~CI~~WL-----~~kksCPvCR~~ 326 (333)
..| ||...+..+...+.. .|..-||..|+.--. ...-.||.|+..
T Consensus 9 ~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 9 LYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred cEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 448 999887644333333 499999999985321 124589999864
No 104
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=76.54 E-value=0.76 Score=32.11 Aligned_cols=42 Identities=17% Similarity=0.407 Sum_probs=29.1
Q ss_pred ccccccccCCCCeeEEe--CCCCcccHHHHHHH----HhcCCCCCCcc
Q 019980 283 CVICRLDYEDGETLTVL--SCKHSYHSECINNW----LKINKVCPVCS 324 (333)
Q Consensus 283 C~ICLe~f~~gd~l~~L--PCgH~FH~~CI~~W----L~~kksCPvCR 324 (333)
|.||...+..+...+.. .|..=||..|+.-- ...+..||.|+
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 88999998755433333 48888999997422 13567899996
No 105
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=76.32 E-value=0.32 Score=37.24 Aligned_cols=42 Identities=21% Similarity=0.546 Sum_probs=26.5
Q ss_pred ccccccccCCCCeeEEe-CCCCcccHHHHHHHHhcC-----CCCCCccc
Q 019980 283 CVICRLDYEDGETLTVL-SCKHSYHSECINNWLKIN-----KVCPVCSA 325 (333)
Q Consensus 283 C~ICLe~f~~gd~l~~L-PCgH~FH~~CI~~WL~~k-----ksCPvCR~ 325 (333)
|.||...-..+ .++.. .|...||..|+.+-|... =.||.|+.
T Consensus 29 C~vC~~~~d~~-~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 29 CHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp BTTTCCCSCGG-GEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCccCCCCCCc-ceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 66665543332 22222 489999999999766432 37999975
No 106
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.17 E-value=0.26 Score=38.75 Aligned_cols=45 Identities=29% Similarity=0.579 Sum_probs=30.4
Q ss_pred CcccccccccCCCCeeEEe-CCCCcccHHHHHHHHhcC----CCCCCcccc
Q 019980 281 FSCVICRLDYEDGETLTVL-SCKHSYHSECINNWLKIN----KVCPVCSAE 326 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~L-PCgH~FH~~CI~~WL~~k----ksCPvCR~~ 326 (333)
..|.||...-... .++.. .|...||..||.+=|... =.||.|+..
T Consensus 17 ~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 17 YICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCccCCCcCCCC-CEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 4499998764332 33333 499999999998655332 269999764
No 107
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=75.28 E-value=0.71 Score=36.32 Aligned_cols=43 Identities=21% Similarity=0.536 Sum_probs=29.8
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhcC----CCCCCccccc
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN----KVCPVCSAEV 327 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~k----ksCPvCR~~V 327 (333)
.|.||... ++.+..-.|.-.||..|+.+=|... -.||.|+..-
T Consensus 27 ~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 27 ICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp CCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred cCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 49999864 4322222489999999998866443 2699998653
No 108
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=74.39 E-value=0.69 Score=34.70 Aligned_cols=47 Identities=19% Similarity=0.376 Sum_probs=30.2
Q ss_pred Cccccccccc-CCCCeeEEe-CCCCcccHHHHHHHHhc--CCCCCCccccc
Q 019980 281 FSCVICRLDY-EDGETLTVL-SCKHSYHSECINNWLKI--NKVCPVCSAEV 327 (333)
Q Consensus 281 ~~C~ICLe~f-~~gd~l~~L-PCgH~FH~~CI~~WL~~--kksCPvCR~~V 327 (333)
..|.||...- .....++.. .|.-.||..|+..-+.- .-.||.|+..-
T Consensus 17 ~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 17 AVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 67 (71)
T ss_dssp CSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCcC
Confidence 3499998764 223334443 49999999999753321 22699887643
No 109
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=72.22 E-value=0.63 Score=42.61 Aligned_cols=45 Identities=22% Similarity=0.562 Sum_probs=25.0
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhcC-----CCCCCcccc
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN-----KVCPVCSAE 326 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~k-----ksCPvCR~~ 326 (333)
.|.||...-..+..+..=.|...||..|+.+=|... =.||.|+..
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 477776543333333222499999999998655421 269999753
No 110
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=71.96 E-value=0.61 Score=37.30 Aligned_cols=48 Identities=27% Similarity=0.560 Sum_probs=30.1
Q ss_pred ccccccccCCCCeeEEeCCCCcccHHHHHHHHhcC----CCCCCccccccCC
Q 019980 283 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN----KVCPVCSAEVSTS 330 (333)
Q Consensus 283 C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~k----ksCPvCR~~V~~s 330 (333)
|.||...-.....+..-.|...||..||.+=|... -.||.|+.....+
T Consensus 57 C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~~g~ 108 (111)
T 2ysm_A 57 CQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICISGP 108 (111)
T ss_dssp CTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCSCSC
T ss_pred ccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcCCCC
Confidence 66776553332222223499999999998655432 3699997765543
No 111
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=70.37 E-value=0.44 Score=37.10 Aligned_cols=48 Identities=25% Similarity=0.613 Sum_probs=32.6
Q ss_pred CcccccccccCC-CCeeEEe-CCCCcccHHHHHHHHhc--------CCCCCCcccccc
Q 019980 281 FSCVICRLDYED-GETLTVL-SCKHSYHSECINNWLKI--------NKVCPVCSAEVS 328 (333)
Q Consensus 281 ~~C~ICLe~f~~-gd~l~~L-PCgH~FH~~CI~~WL~~--------kksCPvCR~~V~ 328 (333)
..|.||...-.. ...++.. .|...||..|+.+-|.. .-.||.|+....
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 349999986443 2233333 49999999999876542 237999977654
No 112
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.16 E-value=1.8 Score=31.61 Aligned_cols=39 Identities=23% Similarity=0.527 Sum_probs=29.4
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 330 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~s 330 (333)
.|+.|-..+..++.+. .-+..||..|+ +|..|++.|...
T Consensus 11 ~C~~C~~~I~~~~~v~--a~~~~~H~~CF--------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 11 KCPKCDKTVYFAEKVS--SLGKDWHKFCL--------KCERCSKTLTPG 49 (76)
T ss_dssp BCTTTCCBCCTTTEEE--ETTEEEETTTC--------BCSSSCCBCCTT
T ss_pred CCcCCCCEeECCeEEE--ECCeEeeCCCC--------CCCCCCCccCCC
Confidence 3999999998776544 35778898775 588998888643
No 113
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=69.53 E-value=8.6 Score=29.99 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=27.9
Q ss_pred CCcccccccccCCCCeeEEeC--CCCcccHHHHHHHHhc
Q 019980 280 GFSCVICRLDYEDGETLTVLS--CKHSYHSECINNWLKI 316 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LP--CgH~FH~~CI~~WL~~ 316 (333)
...|.+|.+.++...- +..| =.|+||..|-+..+++
T Consensus 15 ~l~CtlC~erLEdtHF-VQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLEDTHF-VQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSSTTS-EECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhccCce-eeCCCccCCeeeccccHHHHHh
Confidence 4559999999887543 3444 4899999999998865
No 114
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=69.20 E-value=1.4 Score=32.29 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=19.6
Q ss_pred CcccccccccCCCCeeEEeCCCCcccH-HHHHHHHhcCCCCCCccccc
Q 019980 281 FSCVICRLDYEDGETLTVLSCKHSYHS-ECINNWLKINKVCPVCSAEV 327 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LPCgH~FH~-~CI~~WL~~kksCPvCR~~V 327 (333)
+.|.+|...+..+.- ...=+..||. .|..+ .....|-.|...+
T Consensus 28 F~C~~C~~~L~~~~~--~~~~g~~yC~~~cy~~--~f~~~C~~C~~~~ 71 (76)
T 1iml_A 28 LKCEKCGKTLTSGGH--AEHEGKPYCNHPCYSA--MFGPKGFGRGGAE 71 (76)
T ss_dssp CBCTTTCCBCCTTTE--EEETTEEEETTTHHHH--HSSCCCSSCCCSS
T ss_pred CCccccCccCCCCce--ECcCCeEeeCHHHHHH--HhCccCCCcCCce
Confidence 455666555554321 1112344555 35533 2334566665443
No 115
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=68.47 E-value=1.4 Score=41.08 Aligned_cols=8 Identities=38% Similarity=0.351 Sum_probs=3.1
Q ss_pred CCCCCCCh
Q 019980 29 INSNELSD 36 (333)
Q Consensus 29 ~~~~~~~~ 36 (333)
+..|.+++
T Consensus 251 L~~n~i~~ 258 (386)
T 2ca6_A 251 LNDCLLSA 258 (386)
T ss_dssp CTTCCCCH
T ss_pred CCCCCCch
Confidence 33344433
No 116
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=67.23 E-value=4.3 Score=29.74 Aligned_cols=45 Identities=24% Similarity=0.524 Sum_probs=31.1
Q ss_pred CcccccccccCCCCeeEEe--CCCCcccHHHHHHHH------h----cCCCCCCccc
Q 019980 281 FSCVICRLDYEDGETLTVL--SCKHSYHSECINNWL------K----INKVCPVCSA 325 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~L--PCgH~FH~~CI~~WL------~----~kksCPvCR~ 325 (333)
..|+||...+......+.. .|.--||..|+.--- . ..-.||.|++
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 3499999998776555444 599999999973221 1 1347988863
No 117
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=66.88 E-value=4.5 Score=34.33 Aligned_cols=41 Identities=27% Similarity=0.596 Sum_probs=28.9
Q ss_pred cccccccccCCCCeeEEe-CCCCcccHHHHHHHHh--------c---CCCCCCcccc
Q 019980 282 SCVICRLDYEDGETLTVL-SCKHSYHSECINNWLK--------I---NKVCPVCSAE 326 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~L-PCgH~FH~~CI~~WL~--------~---kksCPvCR~~ 326 (333)
.|.||... |+ +... .|...||..||.+-|. . .-.||+|+..
T Consensus 65 ~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 65 QCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred eecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 39999754 33 3333 5999999999997763 1 2379999743
No 118
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=66.87 E-value=7.2 Score=29.28 Aligned_cols=38 Identities=24% Similarity=0.466 Sum_probs=28.0
Q ss_pred CcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 281 FSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
..|..|-..+.. . .+..-+..||..|+ +|-.|++.|..
T Consensus 26 ~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 26 PLCDKCGSGIVG-A--VVKARDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp CBCTTTCCBCCS-C--CEESSSCEECTTTC--------CCSSSCCCTTT
T ss_pred CCcccCCCEecc-c--EEEECCceECccCC--------EecCCCCCCCC
Confidence 349999998875 2 23446788998775 58889888764
No 119
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=64.35 E-value=1.4 Score=42.50 Aligned_cols=47 Identities=23% Similarity=0.462 Sum_probs=0.0
Q ss_pred cccccccccCCCC-eeEEeCCCCcccHHHHHHHHh-------cCCCCCCcccccc
Q 019980 282 SCVICRLDYEDGE-TLTVLSCKHSYHSECINNWLK-------INKVCPVCSAEVS 328 (333)
Q Consensus 282 ~C~ICLe~f~~gd-~l~~LPCgH~FH~~CI~~WL~-------~kksCPvCR~~V~ 328 (333)
.|.+|...|..-. +.....||++||..|...++. ..++|-.|-..+.
T Consensus 377 ~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 377 MCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp -------------------------------------------------------
T ss_pred cCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 3999999987442 222345999999999977652 2357877766553
No 120
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.84 E-value=2.5 Score=31.58 Aligned_cols=38 Identities=26% Similarity=0.537 Sum_probs=27.6
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
.|+.|-..+...+.+. .-+..||..|+ +|-.|++.|..
T Consensus 17 ~C~~C~~~I~~~e~v~--a~~~~wH~~CF--------~C~~C~~~L~~ 54 (82)
T 2co8_A 17 LCALCGEHLYVLERLC--VNGHFFHRSCF--------RCHTCEATLWP 54 (82)
T ss_dssp BCSSSCCBCCTTTBCC--BTTBCCBTTTC--------BCSSSCCBCCT
T ss_pred CCcccCCCcccceEEE--ECCCeeCCCcC--------EEcCCCCCcCC
Confidence 4999999987665554 34778888775 57788777654
No 121
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=61.70 E-value=0.59 Score=37.88 Aligned_cols=45 Identities=24% Similarity=0.567 Sum_probs=30.2
Q ss_pred ccccccccCCCCeeEEeCCCCcccHHHHHHHHhcC----CCCCCccccc
Q 019980 283 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN----KVCPVCSAEV 327 (333)
Q Consensus 283 C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~k----ksCPvCR~~V 327 (333)
|.||...-..+..+.--.|...||..|+.+=|... -.||.|+..+
T Consensus 61 C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 61 CILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred cCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 88887754444333333599999999998655432 2699997654
No 122
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=60.85 E-value=1 Score=33.39 Aligned_cols=45 Identities=18% Similarity=0.385 Sum_probs=29.8
Q ss_pred CCcccccccccCCCCeeEEeCCCCcccHHHHHHHH---hcCCCCCCccc
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHSYHSECINNWL---KINKVCPVCSA 325 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL---~~kksCPvCR~ 325 (333)
...| ||...+..+..+..-.|..=||..|+.--. ...-.||.|+.
T Consensus 19 ~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred ceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3448 999877633344444599999999985422 13357999975
No 123
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.35 E-value=5 Score=29.47 Aligned_cols=39 Identities=21% Similarity=0.474 Sum_probs=28.0
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
.|+.|-..+..++.++ ..-+..||..|+ +|-.|++.|..
T Consensus 17 ~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 17 KCKGCFKAIVAGDQNV-EYKGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp BCSSSCCBCCSSSCEE-ECSSCEEETTTC--------CCSSSCCCCTT
T ss_pred cCccCCcccccCceEE-EECccccccccC--------chhhCCCccCC
Confidence 3999999888765543 234778887765 58888888764
No 124
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=59.63 E-value=3.8 Score=32.98 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=21.2
Q ss_pred ccccccccC----C--CCeeEE-eCCCCcccHHHHHHH
Q 019980 283 CVICRLDYE----D--GETLTV-LSCKHSYHSECINNW 313 (333)
Q Consensus 283 C~ICLe~f~----~--gd~l~~-LPCgH~FH~~CI~~W 313 (333)
|.||+..-. . +..++. ..|+..||..||..+
T Consensus 4 C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 4 CDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 999987642 1 223333 359999999998755
No 125
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.25 E-value=3.3 Score=30.87 Aligned_cols=37 Identities=24% Similarity=0.722 Sum_probs=27.7
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~ 328 (333)
.|+.|-..+..++.+.. -+..||..|+ +|-.|++.|.
T Consensus 17 ~C~~C~~~I~~~~~v~a--~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 17 HCAGCKEEIKHGQSLLA--LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp CCTTTCCCCSSSCCEEE--TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCcCcCCeeCCCeEEEE--CCcccccccC--------CcCcCCCCcC
Confidence 39999999887765544 4678888775 6888888775
No 126
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=59.04 E-value=1.2 Score=32.15 Aligned_cols=40 Identities=30% Similarity=0.726 Sum_probs=24.8
Q ss_pred cccccccccCCCCeeEEeC--CC-CcccHHHHHHHHhcC----CCCCCccc
Q 019980 282 SCVICRLDYEDGETLTVLS--CK-HSYHSECINNWLKIN----KVCPVCSA 325 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LP--Cg-H~FH~~CI~~WL~~k----ksCPvCR~ 325 (333)
-| ||..... +..+..=. |. .-||..||. |... -.||.|++
T Consensus 12 ~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 12 YC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp ET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred EE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 36 8988643 42222113 55 679999997 5432 37999965
No 127
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=57.93 E-value=1 Score=37.27 Aligned_cols=44 Identities=20% Similarity=0.533 Sum_probs=29.6
Q ss_pred ccccccccCCCC-eeEEeCCCCcccHHHHHHHHhcCCCCCCcccc
Q 019980 283 CVICRLDYEDGE-TLTVLSCKHSYHSECINNWLKINKVCPVCSAE 326 (333)
Q Consensus 283 C~ICLe~f~~gd-~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~ 326 (333)
|.+|...|..-. +...-.||.+||..|....+...++|-.|-..
T Consensus 22 C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 22 CKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp CTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred ccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 999999997533 22334599999999987766556777777543
No 128
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=57.91 E-value=4.1 Score=29.64 Aligned_cols=41 Identities=20% Similarity=0.485 Sum_probs=27.9
Q ss_pred ccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCc
Q 019980 283 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVC 323 (333)
Q Consensus 283 C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvC 323 (333)
|-.|...|......+.-.|++.|+..|=.---.+-..||-|
T Consensus 18 C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 18 CYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp ETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred ccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 99999998543222223499999999954333444689988
No 129
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.75 E-value=6.2 Score=28.00 Aligned_cols=37 Identities=32% Similarity=0.785 Sum_probs=24.5
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
.|+.|-..+... . +..-+..||..|+ +|-.|++.|..
T Consensus 7 ~C~~C~~~I~~~-~--~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8z_A 7 GCVQCKKPITTG-G--VTYREQPWHKECF--------VCTACRKQLSG 43 (70)
T ss_dssp BCSSSCCBCCSS-E--EESSSSEEETTTS--------BCSSSCCBCTT
T ss_pred CCcccCCeeccc-e--EEECccccCCCCC--------ccCCCCCcCCc
Confidence 388888887643 2 3345777887665 57778777753
No 130
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=56.00 E-value=1.5 Score=31.62 Aligned_cols=40 Identities=28% Similarity=0.708 Sum_probs=25.6
Q ss_pred cccccccccCCCCeeEEeC--CC-CcccHHHHHHHHhc----CCCCCCccc
Q 019980 282 SCVICRLDYEDGETLTVLS--CK-HSYHSECINNWLKI----NKVCPVCSA 325 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LP--Cg-H~FH~~CI~~WL~~----kksCPvCR~ 325 (333)
-| ||..... +..+..=. |. .-||..||. |.. +-.||.|++
T Consensus 11 yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 11 YC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp ET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred EE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 36 8988653 43222223 66 689999997 433 237999975
No 131
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.94 E-value=6.6 Score=27.97 Aligned_cols=38 Identities=24% Similarity=0.572 Sum_probs=25.8
Q ss_pred ccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 283 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 283 C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
|+.|-..+...+.++. .-+..||..|+ +|-.|++.|..
T Consensus 8 C~~C~~~I~~~~~~~~-a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x4k_A 8 CQECKKTIMPGTRKME-YKGSSWHETCF--------ICHRCQQPIGT 45 (72)
T ss_dssp BSSSCCCCCSSSCEEE-ETTEEEETTTT--------CCSSSCCCCCS
T ss_pred CccCCCcccCCceEEE-ECcCeecccCC--------cccccCCccCC
Confidence 8889888876543322 24667887665 58888877754
No 132
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.94 E-value=4.2 Score=30.67 Aligned_cols=36 Identities=22% Similarity=0.528 Sum_probs=24.6
Q ss_pred ccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 283 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 283 C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
|+.|-..+. +.. +..-+..||..|+ +|-.|++.|..
T Consensus 28 C~~C~~~I~-~~~--v~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 28 CAHCNQVIR-GPF--LVALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp BSSSCCBCC-SCE--EEETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CccCCCEec-ceE--EEECCccccccCC--------ccCCCCCCCCC
Confidence 888888885 332 2345778887665 58888877753
No 133
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=55.22 E-value=11 Score=31.37 Aligned_cols=41 Identities=29% Similarity=0.666 Sum_probs=27.9
Q ss_pred cccccccccCCCCeeEEe-CCCCcccHHHHHHHH------hc-----CCCCCCcccc
Q 019980 282 SCVICRLDYEDGETLTVL-SCKHSYHSECINNWL------KI-----NKVCPVCSAE 326 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~L-PCgH~FH~~CI~~WL------~~-----kksCPvCR~~ 326 (333)
.|.||... | .++.- .|-..||..||.+-| +. .=.|++|+-.
T Consensus 59 ~C~vC~dG---G-~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 59 QCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCTTTCCC---S-EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred cCeecCCC---C-eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 39999754 3 23333 489999999999853 21 1379999653
No 134
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.11 E-value=6.3 Score=28.12 Aligned_cols=37 Identities=27% Similarity=0.610 Sum_probs=18.9
Q ss_pred ccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 019980 283 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 283 C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~ 328 (333)
|..|-..+...+.+ +..-+..||..|+ +|-.|++.|.
T Consensus 8 C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 8 CGGCGEDVVGDGAG-VVALDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CSSSCSCCCSSSCC-EECSSSEECTTTC--------BCSSSCCBCT
T ss_pred CccCCCccCCCceE-EEECCCeEcccCC--------cccccCCcCC
Confidence 66666665543222 2223556665553 4666666653
No 135
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.85 E-value=5.6 Score=28.34 Aligned_cols=39 Identities=18% Similarity=0.543 Sum_probs=25.3
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
.|..|-..+.....+ +..-+..||..|+ +|-.|++.|..
T Consensus 7 ~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 7 GCSACGETVMPGSRK-LEYGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp BCSSSCCBCCSSSCE-ECSTTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCccCCCccccCccE-EEECccccCcccC--------eECCCCCcCCC
Confidence 388888887754322 2335677887665 57778777654
No 136
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.57 E-value=4.9 Score=29.54 Aligned_cols=36 Identities=25% Similarity=0.470 Sum_probs=26.1
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~ 328 (333)
.|..|-..+... .+..-+..||..|+ +|-.|++.|.
T Consensus 17 ~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 17 MCDKCGTGIVGV---FVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCSSSCCCCCSS---CEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred ccccCCCCccCc---EEEECcceeCcCcC--------eeCCCCCCCC
Confidence 399999988753 33446788998776 5888877764
No 137
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.43 E-value=6.3 Score=28.21 Aligned_cols=39 Identities=21% Similarity=0.548 Sum_probs=26.7
Q ss_pred cccccccccCC--CCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 282 SCVICRLDYED--GETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 282 ~C~ICLe~f~~--gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
.|..|-..+.. ...+ +..-+..||..|+ +|-.|++.|..
T Consensus 7 ~C~~C~~~I~~~~~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~~ 47 (72)
T 1x4l_A 7 GCAGCTNPISGLGGTKY-ISFEERQWHNDCF--------NCKKCSLSLVG 47 (72)
T ss_dssp SBTTTTBCCCCSSSCSC-EECSSCEECTTTC--------BCSSSCCBCTT
T ss_pred CCcCCCccccCCCCcce-EEECCcccCcccC--------EeccCCCcCCC
Confidence 39999988875 2222 3336788888775 68888887753
No 138
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=52.61 E-value=1.9 Score=42.80 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 019980 68 ADLALARTLQEQERAYMML 86 (333)
Q Consensus 68 ~d~~~a~~lq~qe~~y~~~ 86 (333)
.|+.|+.+|.+.-..+.++
T Consensus 340 ~DfeIG~~Ikd~IiP~AV~ 358 (417)
T 2ayu_A 340 LDYSIGEQLKDKLIPRAVD 358 (417)
T ss_dssp HHHHHHHHHHHTTTTTHHH
T ss_pred HHHHHHHHHHhhccccHHH
Confidence 4556666666555444443
No 139
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=52.54 E-value=4.9 Score=28.37 Aligned_cols=39 Identities=26% Similarity=0.666 Sum_probs=28.9
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
.|+.|-..+...+.++. .=+..||..|+ +|-.|++.|..
T Consensus 13 ~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 13 TCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp BCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCGG
T ss_pred cchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCCC
Confidence 39999999987765533 34667888776 68888888754
No 140
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=52.23 E-value=6 Score=27.81 Aligned_cols=37 Identities=30% Similarity=0.565 Sum_probs=26.9
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
.|+.|-..+. +. .+..-+..||..|+ +|-.|++.|..
T Consensus 7 ~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 7 ICGACRRPIE-GR--VVNAMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp EETTTTEECC-SC--EECCTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCcccCCEec-ce--EEEECccccccCcC--------EECCCCCCCCC
Confidence 4999999887 43 23446778888775 58889888764
No 141
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=51.04 E-value=4.2 Score=29.94 Aligned_cols=37 Identities=24% Similarity=0.604 Sum_probs=25.7
Q ss_pred ccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 283 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 283 C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
|+.|-..+..++.+. .-+..||..|+ +|-.|++.|..
T Consensus 10 C~~C~~~I~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~ 46 (81)
T 1a7i_A 10 CGACGRTVYHAEEVQ--CDGRSFHRCCF--------LCMVCRKNLDS 46 (81)
T ss_dssp CSSSCCBCSSTTEEE--ETTEEEESSSE--------ECSSSCCEECS
T ss_pred CcCcCccccCceeEE--eCCcccccccC--------ccCCCCCCCCC
Confidence 888988887665433 35677887665 47778777754
No 142
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.01 E-value=7.2 Score=28.30 Aligned_cols=37 Identities=30% Similarity=0.656 Sum_probs=26.0
Q ss_pred ccccccccCC--CCeeEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 019980 283 CVICRLDYED--GETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 283 C~ICLe~f~~--gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~ 328 (333)
|+.|-..+.. ... .+..-+..||..|+ +|-.|++.|.
T Consensus 8 C~~C~~~I~~~g~~~-~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 8 CVACSKPISGLTGAK-FICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CTTTCCCCCTTTTCC-EEEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CccCCCcccCCCCce-eEEECCcccCcccC--------ChhhCCCcCC
Confidence 9999998875 222 23335778998776 5888887775
No 143
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=50.92 E-value=6.5 Score=31.70 Aligned_cols=42 Identities=29% Similarity=0.582 Sum_probs=27.3
Q ss_pred CcccccccccCCCCeeEEe---CCCCcccHHHHHHHHhcC----CCCCCcccccc
Q 019980 281 FSCVICRLDYEDGETLTVL---SCKHSYHSECINNWLKIN----KVCPVCSAEVS 328 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~L---PCgH~FH~~CI~~WL~~k----ksCPvCR~~V~ 328 (333)
..|.||.. .| .++.. .|...||..||. |... -.||.|+-.+.
T Consensus 16 ~~C~~C~~---~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 16 DYCFQCGD---GG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp SSCTTTCC---CS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCcCCC---CC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 34999983 34 33343 388999999997 5432 25887765544
No 144
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=50.56 E-value=7.4 Score=31.96 Aligned_cols=33 Identities=15% Similarity=0.409 Sum_probs=23.9
Q ss_pred cccccccccCCCCe-eEEeCCCCcccHHHHHHHH
Q 019980 282 SCVICRLDYEDGET-LTVLSCKHSYHSECINNWL 314 (333)
Q Consensus 282 ~C~ICLe~f~~gd~-l~~LPCgH~FH~~CI~~WL 314 (333)
.|.+|...|..-.. ...-.||++||..|....+
T Consensus 71 ~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~ 104 (125)
T 1joc_A 71 NCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNA 104 (125)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCccccccccccCCCCCeEEChHHhCCcc
Confidence 39999999975432 2233599999999976543
No 145
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=49.53 E-value=22 Score=28.11 Aligned_cols=47 Identities=19% Similarity=0.409 Sum_probs=33.2
Q ss_pred cccccccccCC---CCeeEE-eCCCCcccHHHHHHHHh-cCCCCCCcccccc
Q 019980 282 SCVICRLDYED---GETLTV-LSCKHSYHSECINNWLK-INKVCPVCSAEVS 328 (333)
Q Consensus 282 ~C~ICLe~f~~---gd~l~~-LPCgH~FH~~CI~~WL~-~kksCPvCR~~V~ 328 (333)
.|.||-+.+-. |+..+. --|+--.|..|+.-=.+ -+..||-|++...
T Consensus 18 iCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 18 FCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp BCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred ccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 49999998653 332222 24888899999865443 5678999998874
No 146
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=49.51 E-value=2.7 Score=34.14 Aligned_cols=25 Identities=24% Similarity=0.590 Sum_probs=15.9
Q ss_pred EeCCCCcccHHHHHHHHhcCCCCCCccccc
Q 019980 298 VLSCKHSYHSECINNWLKINKVCPVCSAEV 327 (333)
Q Consensus 298 ~LPCgH~FH~~CI~~WL~~kksCPvCR~~V 327 (333)
...||+.|. .-+.....||.|+.+-
T Consensus 70 C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 70 CRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp BTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred hhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 345888881 1223456899998763
No 147
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=48.40 E-value=5.9 Score=33.13 Aligned_cols=30 Identities=17% Similarity=0.486 Sum_probs=21.6
Q ss_pred cccccccccC-C-CCeeEEeCCCCcccHHHHH
Q 019980 282 SCVICRLDYE-D-GETLTVLSCKHSYHSECIN 311 (333)
Q Consensus 282 ~C~ICLe~f~-~-gd~l~~LPCgH~FH~~CI~ 311 (333)
.|+||...|. . +-......|+|.+|..|-.
T Consensus 57 ~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 57 RCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp BCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred cccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 3999999994 2 3334445699999998854
No 148
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=47.59 E-value=12 Score=29.74 Aligned_cols=47 Identities=11% Similarity=0.031 Sum_probs=31.3
Q ss_pred cccccccccCC-CCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 282 SCVICRLDYED-GETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 282 ~C~ICLe~f~~-gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
.|..|...+.. +... ...=+..||..|..+-+..+..|-.|.+.|..
T Consensus 34 ~C~~C~~~L~~~~~~~-~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSS-YTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp CCSSSCCCTTTSEECC-EEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CcCCCCCcccccCCeE-EEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 37777777642 2112 22346678888888876666689999988874
No 149
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.29 E-value=6.9 Score=28.25 Aligned_cols=39 Identities=26% Similarity=0.666 Sum_probs=26.5
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
.|+.|-..+...+.++. .-+..||..|+ +|-.|++.|..
T Consensus 13 ~C~~C~~~I~~~~~~~~-a~~~~~H~~CF--------~C~~C~~~L~~ 51 (77)
T 1g47_A 13 TCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPE 51 (77)
T ss_dssp BCSSSCCBCCSTTTCEE-ETTEEECTTTC--------CCTTTCCCCGG
T ss_pred CchhcCCccCCCceEEE-eCccEeccccC--------eECCCCCCCCC
Confidence 39999998875544432 24667887665 57888877754
No 150
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=47.29 E-value=2.5 Score=30.76 Aligned_cols=42 Identities=26% Similarity=0.672 Sum_probs=26.0
Q ss_pred CcccccccccCCCCeeEEeC--CC-CcccHHHHHHHHhc----CCCCCCcccc
Q 019980 281 FSCVICRLDYEDGETLTVLS--CK-HSYHSECINNWLKI----NKVCPVCSAE 326 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LP--Cg-H~FH~~CI~~WL~~----kksCPvCR~~ 326 (333)
.-| ||..... +..+..=. |. .-||..||. |.. +-.||.|++.
T Consensus 12 ~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 12 TYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp EET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred cEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 336 8988643 43222223 55 789999997 332 3479999753
No 151
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.03 E-value=9.6 Score=28.69 Aligned_cols=36 Identities=31% Similarity=0.700 Sum_probs=20.8
Q ss_pred ccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 019980 283 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 283 C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~ 328 (333)
|+.|-..+...+.+ ..-+..||..|+ +|-.|++.|.
T Consensus 18 C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~ 53 (91)
T 2d8y_A 18 CVECQKTVYPMERL--LANQQVFHISCF--------RCSYCNNKLS 53 (91)
T ss_dssp CTTTCCBCCTTSEE--ECSSSEEETTTC--------BCTTTCCBCC
T ss_pred CccCCCccCCceeE--EECCCEECCCCC--------eeCCCCCCCC
Confidence 77777777655433 344566666554 3555655554
No 152
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=46.42 E-value=14 Score=29.36 Aligned_cols=37 Identities=27% Similarity=0.597 Sum_probs=28.7
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~ 328 (333)
.|+-|-..+.....+. .-+..||..|+ +|-.|++.|.
T Consensus 7 ~C~~C~~~I~~~~~~~--a~~~~wH~~CF--------~C~~C~~~L~ 43 (122)
T 1m3v_A 7 RCAGCGGKIADRFLLY--AMDSYWHSRCL--------KCSSCQAQLG 43 (122)
T ss_dssp CBSSSSSCCCSSCCEE--ETTEEECHHHH--------CCSSSCCCTT
T ss_pred CCcccCCEeCCcEEEE--ECCceeHhhCC--------CcCCCCCccc
Confidence 3999999988664333 35788999997 6999998885
No 153
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=45.90 E-value=6.4 Score=31.90 Aligned_cols=38 Identities=24% Similarity=0.550 Sum_probs=28.1
Q ss_pred CcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 019980 281 FSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~ 328 (333)
..|+.|-..+..... +..-+..||..|+ +|-.|++.|.
T Consensus 62 ~~C~~C~~~I~~~~~--v~a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADRFL--LYAMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSSSE--EEETTEEEETTTS--------BCTTTCCBGG
T ss_pred CcCcCCCCCcCCcEE--EEeCCcEEccccc--------CcCcCCCccc
Confidence 349999999875532 3346788998775 6899998885
No 154
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=45.89 E-value=6.8 Score=31.39 Aligned_cols=33 Identities=18% Similarity=0.542 Sum_probs=17.3
Q ss_pred CcccccccccCCCCeeEEeCCCCcccHHHHHHHH
Q 019980 281 FSCVICRLDYEDGETLTVLSCKHSYHSECINNWL 314 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL 314 (333)
+.|.+|...+..+...... =+..||..|..+.+
T Consensus 37 F~C~~C~~~L~~g~~f~~~-~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRYLLI-NSDIVCEQDIYEWT 69 (123)
T ss_dssp CBCTTTCCBCCTTCEEEEC-SSSEEEGGGHHHHH
T ss_pred CccccCCCCCCCCCcEEee-CCEEEcHHHhHHHh
Confidence 4566666665444333222 35566666665554
No 155
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.71 E-value=6.8 Score=27.75 Aligned_cols=35 Identities=26% Similarity=0.726 Sum_probs=22.3
Q ss_pred ccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 019980 283 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 283 C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~ 328 (333)
|+.|-..+.. ..+ ..-+..||..|+ +|-.|++.|.
T Consensus 8 C~~C~~~I~~-~~~--~a~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 8 CVKCNKAITS-GGI--TYQDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CSSSCCCCCT-TCE--EETTEEECTTTT--------BCTTTCCBCT
T ss_pred CcccCCEeCc-ceE--EECccccccCcC--------EECCCCCCCC
Confidence 8888877753 322 234667777665 4777777765
No 156
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.58 E-value=6.9 Score=27.82 Aligned_cols=37 Identities=22% Similarity=0.571 Sum_probs=23.5
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
.|..|-..+.. ..+ ..-+..||..|+ +|-.|++.|..
T Consensus 7 ~C~~C~~~I~~-~~~--~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8x_A 7 GCHQCGEFIIG-RVI--KAMNNSWHPECF--------RCDLCQEVLAD 43 (70)
T ss_dssp BCSSSCCBCCS-CCE--EETTEEECTTTS--------BCSSSCCBCSS
T ss_pred cCccCCCEecc-eEE--EECcccccccCC--------EeCCCCCcCCC
Confidence 38888887763 222 234667777665 57777777654
No 157
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.34 E-value=11 Score=27.38 Aligned_cols=35 Identities=20% Similarity=0.546 Sum_probs=20.7
Q ss_pred ccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 019980 283 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 283 C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~ 328 (333)
|+-|-..+... .+..-+..||..|+ +|-.|++.|.
T Consensus 8 C~~C~~~I~~~---~v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 8 CDSCEKYITGR---VLEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CSSSCCCCSSC---CBCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred cccCCCEecCe---eEEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 77777766542 22335667776664 4666666664
No 158
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=45.00 E-value=8.6 Score=34.10 Aligned_cols=34 Identities=15% Similarity=0.410 Sum_probs=24.3
Q ss_pred CcccccccccCCCCeeEE-eCCCCcccHHHHHHHH
Q 019980 281 FSCVICRLDYEDGETLTV-LSCKHSYHSECINNWL 314 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~-LPCgH~FH~~CI~~WL 314 (333)
..|.+|...|..-..-.. -.||++||..|....+
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~ 196 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQC 196 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEE
T ss_pred CccCCCCCccCCcccccccCCcCCEEChHHhCCee
Confidence 349999999975432223 3599999999976543
No 159
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=44.64 E-value=11 Score=29.03 Aligned_cols=45 Identities=22% Similarity=0.551 Sum_probs=29.8
Q ss_pred cccccccccCCCCe-eEEeCCCCcccHHHHHHHHh------cCCCCCCcccc
Q 019980 282 SCVICRLDYEDGET-LTVLSCKHSYHSECINNWLK------INKVCPVCSAE 326 (333)
Q Consensus 282 ~C~ICLe~f~~gd~-l~~LPCgH~FH~~CI~~WL~------~kksCPvCR~~ 326 (333)
.|.+|...|..-.. .....||++||..|...++. ..++|-.|-..
T Consensus 22 ~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~ 73 (90)
T 3t7l_A 22 NCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYET 73 (90)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHH
T ss_pred cCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHH
Confidence 39999999975432 22335999999999876542 12456666443
No 160
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=42.96 E-value=12 Score=27.85 Aligned_cols=30 Identities=30% Similarity=0.552 Sum_probs=23.6
Q ss_pred CCcccccccccCCCCeeEEeCC-CCcccHHHHHHH
Q 019980 280 GFSCVICRLDYEDGETLTVLSC-KHSYHSECINNW 313 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPC-gH~FH~~CI~~W 313 (333)
..-|.||.++ -.++.+.| +-.||..|...-
T Consensus 8 ~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 8 LPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred CCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 3449999888 34677889 889999998764
No 161
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.79 E-value=11 Score=27.38 Aligned_cols=35 Identities=29% Similarity=0.752 Sum_probs=23.8
Q ss_pred ccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 019980 283 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 283 C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~ 328 (333)
|+.|-..+... .+..-+..||..|+ +|-.|++.|.
T Consensus 18 C~~C~~~I~~~---~v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 18 CARCSKTLTQG---GVTYRDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp CTTTCCCCCSC---CEESSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCCCEecCc---EEEECCchhhhhhC--------CcccCCCcCC
Confidence 88888877653 23345777887665 5778877774
No 162
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=41.51 E-value=11 Score=33.79 Aligned_cols=47 Identities=17% Similarity=0.507 Sum_probs=32.3
Q ss_pred cccccccccCCCCeeEE-eCCCCcccHHHHHHHHh--------cCCCCCCcccccc
Q 019980 282 SCVICRLDYEDGETLTV-LSCKHSYHSECINNWLK--------INKVCPVCSAEVS 328 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~-LPCgH~FH~~CI~~WL~--------~kksCPvCR~~V~ 328 (333)
.|.+|...|..-..-.. -.||++||..|-..++. ..+.|-.|-..+.
T Consensus 166 ~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 166 ECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN 221 (226)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHC
T ss_pred CCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhh
Confidence 49999999985533223 35999999999875532 2246777766554
No 163
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.86 E-value=9.8 Score=28.01 Aligned_cols=37 Identities=19% Similarity=0.539 Sum_probs=23.5
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
.|+.|-..+. +.. +..-+..||..|+ +|-.|++.|..
T Consensus 17 ~C~~C~~~I~-~~~--v~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 2cor_A 17 ICQKCHAIID-EQP--LIFKNDPYHPDHF--------NCANCGKELTA 53 (79)
T ss_dssp BCTTTCCBCC-SCC--CCCSSSCCCTTTS--------BCSSSCCBCCT
T ss_pred CCccCCCEec-ceE--EEECcceeCCCCC--------EeCCCCCccCC
Confidence 3888888777 322 2235667777664 57777777653
No 164
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.78 E-value=11 Score=27.68 Aligned_cols=36 Identities=33% Similarity=0.798 Sum_probs=23.6
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~ 328 (333)
.|+.|-..+. +..+ ..-+..||..|+ +|-.|++.|.
T Consensus 17 ~C~~C~~~I~-~~~v--~a~~~~wH~~CF--------~C~~C~~~L~ 52 (81)
T 1v6g_A 17 RCFSCDQFIE-GEVV--SALGKTYHPDCF--------VCAVCRLPFP 52 (81)
T ss_dssp BCTTTCCBCC-SCCE--EETTEEECTTTS--------SCSSSCCCCC
T ss_pred cCccccCEec-cceE--EECCceeCccCC--------ccccCCCCCC
Confidence 3999988887 3322 235677887665 4666766664
No 165
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=40.44 E-value=14 Score=28.53 Aligned_cols=47 Identities=17% Similarity=0.414 Sum_probs=30.1
Q ss_pred CcccccccccCCCCe-eEEeCCCCcccHHHHHHHHh-------cCCCCCCccccc
Q 019980 281 FSCVICRLDYEDGET-LTVLSCKHSYHSECINNWLK-------INKVCPVCSAEV 327 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~-l~~LPCgH~FH~~CI~~WL~-------~kksCPvCR~~V 327 (333)
..|.+|...|..-.. .-.-.||++||..|....+. ..++|-.|-..|
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l 64 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTIL 64 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHH
T ss_pred CCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHH
Confidence 349999999975432 22235999999999765431 224566665443
No 166
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=40.20 E-value=11 Score=30.35 Aligned_cols=11 Identities=27% Similarity=1.223 Sum_probs=10.0
Q ss_pred ccHHHHHHHHh
Q 019980 305 YHSECINNWLK 315 (333)
Q Consensus 305 FH~~CI~~WL~ 315 (333)
||..||.+|++
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999999995
No 167
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=40.08 E-value=11 Score=30.28 Aligned_cols=11 Identities=27% Similarity=1.093 Sum_probs=10.1
Q ss_pred ccHHHHHHHHh
Q 019980 305 YHSECINNWLK 315 (333)
Q Consensus 305 FH~~CI~~WL~ 315 (333)
||..||.+|++
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999999995
No 168
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=39.81 E-value=15 Score=27.83 Aligned_cols=47 Identities=15% Similarity=0.358 Sum_probs=31.4
Q ss_pred cccccccccCCCCeeEE-eCCCCcccHHHHHHHHh--------cCCCCCCcccccc
Q 019980 282 SCVICRLDYEDGETLTV-LSCKHSYHSECINNWLK--------INKVCPVCSAEVS 328 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~-LPCgH~FH~~CI~~WL~--------~kksCPvCR~~V~ 328 (333)
.|.+|...|..-..-.. -.||++||..|....+. ..++|-.|-..+.
T Consensus 23 ~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~ 78 (84)
T 1z2q_A 23 ACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALR 78 (84)
T ss_dssp BCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHH
T ss_pred CCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHh
Confidence 49999999986432222 35999999999866531 2246777755543
No 169
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=39.50 E-value=17 Score=26.82 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=23.0
Q ss_pred cccccccccCCCCeeEE-eCCCCcccHHHHHHH
Q 019980 282 SCVICRLDYEDGETLTV-LSCKHSYHSECINNW 313 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~-LPCgH~FH~~CI~~W 313 (333)
.|.+|...|..-..-.. -.||.+||..|....
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred cccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 39999999975432222 359999999997543
No 170
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=39.32 E-value=20 Score=28.50 Aligned_cols=45 Identities=13% Similarity=0.365 Sum_probs=21.5
Q ss_pred ccccccccCC-CCeeEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 019980 283 CVICRLDYED-GETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 283 C~ICLe~f~~-gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~ 328 (333)
|..|...+.. +... ...=+..||..|..+-+..+..|+.|.+.|.
T Consensus 32 C~~C~~~L~~~~~~~-~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 32 CDLCGCRLGEVGRRL-YYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp CTTTCCBCSSTTCCE-EEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred cCcCCCccccCCCeE-EEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 6666555542 2111 1122445666665554333335666666654
No 171
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=38.86 E-value=7.4 Score=24.20 Aligned_cols=27 Identities=19% Similarity=0.428 Sum_probs=20.3
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHH
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECI 310 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI 310 (333)
.|+.|-..+...+++.. =+..||..|+
T Consensus 5 ~C~~C~k~Vy~~Ek~~~--~g~~~Hk~CF 31 (31)
T 1zfo_A 5 NCARCGKIVYPTEKVNC--LDKFWHKACF 31 (31)
T ss_dssp BCSSSCSBCCGGGCCCS--SSSCCCGGGC
T ss_pred cCCccCCEEecceeEEE--CCeEecccCC
Confidence 49999998887755543 4788998883
No 172
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=38.59 E-value=27 Score=30.19 Aligned_cols=40 Identities=20% Similarity=0.527 Sum_probs=28.2
Q ss_pred cccccccccCCCCeeEEe---CCCCcccHHHHHHHHhcC----------CCCCCccc
Q 019980 282 SCVICRLDYEDGETLTVL---SCKHSYHSECINNWLKIN----------KVCPVCSA 325 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~L---PCgH~FH~~CI~~WL~~k----------ksCPvCR~ 325 (333)
-|.||-.. ..++.. .|...||..||..++... =.|=+|.-
T Consensus 81 yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 81 YCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred eeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 39999753 344444 389999999999998432 26888853
No 173
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.42 E-value=11 Score=27.67 Aligned_cols=35 Identities=26% Similarity=0.692 Sum_probs=23.0
Q ss_pred ccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 019980 283 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 283 C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~ 328 (333)
|+.|-..+.. . .+..-+..||..|+ +|..|++.|.
T Consensus 18 C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 2dlo_A 18 CATCSQPILD-R--ILRAMGKAYHPGCF--------TCVVCHRGLD 52 (81)
T ss_dssp CTTTCCBCCS-C--CEEETTEEECTTTC--------BCSSSCCBCT
T ss_pred cccCCCeecc-e--eEEECCccccHHhc--------CcccCCCccC
Confidence 8888887763 2 22235677787664 5788877775
No 174
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=38.41 E-value=15 Score=27.78 Aligned_cols=47 Identities=21% Similarity=0.491 Sum_probs=30.7
Q ss_pred cccccccccCCCCeeEE-eCCCCcccHHHHHHHHh------cCCCCCCcccccc
Q 019980 282 SCVICRLDYEDGETLTV-LSCKHSYHSECINNWLK------INKVCPVCSAEVS 328 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~-LPCgH~FH~~CI~~WL~------~kksCPvCR~~V~ 328 (333)
.|.+|...|..-..-.. -.||.+||..|....+. ..+.|-.|-..|.
T Consensus 21 ~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 21 HCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLL 74 (82)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTT
T ss_pred cccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHH
Confidence 39999999985432222 35999999999865431 1235666655544
No 175
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=38.10 E-value=5.5 Score=40.12 Aligned_cols=44 Identities=25% Similarity=0.583 Sum_probs=29.4
Q ss_pred ccccccccCCCC-eeEEeCCCCcccHHHHHHHHh-----cCCCCCCccccc
Q 019980 283 CVICRLDYEDGE-TLTVLSCKHSYHSECINNWLK-----INKVCPVCSAEV 327 (333)
Q Consensus 283 C~ICLe~f~~gd-~l~~LPCgH~FH~~CI~~WL~-----~kksCPvCR~~V 327 (333)
| ||...+..+. .+.+--|.-=||..|+.---. .+-.||.|+...
T Consensus 40 C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 40 C-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp T-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred E-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 5 9998876333 444445999999999843221 235899998653
No 176
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=37.91 E-value=3.5 Score=28.59 Aligned_cols=41 Identities=17% Similarity=0.352 Sum_probs=26.9
Q ss_pred ccccccCCCCeeEEeCCCCcccHHHHHHHH---hcCCCCCCccc
Q 019980 285 ICRLDYEDGETLTVLSCKHSYHSECINNWL---KINKVCPVCSA 325 (333)
Q Consensus 285 ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL---~~kksCPvCR~ 325 (333)
||......+..+..-.|..=||..|+.--. ..+-.||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 687766533344434599999999985322 23458999975
No 177
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=37.74 E-value=6.3 Score=29.30 Aligned_cols=46 Identities=24% Similarity=0.540 Sum_probs=29.9
Q ss_pred ccccccccCCCC-eeEEeCCCCcccHHHHHHHHh-----cCCCCCCcccccc
Q 019980 283 CVICRLDYEDGE-TLTVLSCKHSYHSECINNWLK-----INKVCPVCSAEVS 328 (333)
Q Consensus 283 C~ICLe~f~~gd-~l~~LPCgH~FH~~CI~~WL~-----~kksCPvCR~~V~ 328 (333)
-.||...+..+. .+..-.|.-=||..||.---. ..-.||.|+....
T Consensus 12 yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~ 63 (75)
T 3kqi_A 12 YCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHG 63 (75)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHC
T ss_pred EEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccCC
Confidence 348988775433 333335999999999953221 2457999987643
No 178
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.66 E-value=10 Score=27.57 Aligned_cols=37 Identities=30% Similarity=0.569 Sum_probs=24.8
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
.|+.|-..+.. ..+ ..-+..||..|+ +|-.|++.|..
T Consensus 17 ~C~~C~~~I~~-~~v--~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 1x3h_A 17 KCGGCNRPVLE-NYL--SAMDTVWHPECF--------VCGDCFTSFST 53 (80)
T ss_dssp BCTTTCCBCCS-SCE--EETTEEECTTTC--------BCSSSCCBSCS
T ss_pred ccccCCCeecc-eeE--EECCCeEecCcC--------ChhhCCCCCCC
Confidence 38888888775 222 334667887664 58888887754
No 179
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=37.41 E-value=1.8 Score=31.86 Aligned_cols=43 Identities=19% Similarity=0.389 Sum_probs=26.9
Q ss_pred ccccccccCCCCeeEEe--CCCCcccHHHHHHHH---h-----cCCCCCCcccc
Q 019980 283 CVICRLDYEDGETLTVL--SCKHSYHSECINNWL---K-----INKVCPVCSAE 326 (333)
Q Consensus 283 C~ICLe~f~~gd~l~~L--PCgH~FH~~CI~~WL---~-----~kksCPvCR~~ 326 (333)
| ||......+..+..= .|..=||..|+.--- . .+-.||.||..
T Consensus 13 C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 13 C-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp C-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHH
T ss_pred e-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCc
Confidence 7 797766666433322 288889999983210 1 13579999853
No 180
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=37.31 E-value=7.6 Score=28.95 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=13.3
Q ss_pred HHHHhcCCCCCCcccccc
Q 019980 311 NNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 311 ~~WL~~kksCPvCR~~V~ 328 (333)
.+||..--.||+|+..+.
T Consensus 2 d~~LLeiL~CP~ck~~L~ 19 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLK 19 (69)
T ss_dssp -CCGGGTCCCTTTCCCCE
T ss_pred ChHHHhheeCCCCCCcCe
Confidence 456777778999998775
No 181
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=37.02 E-value=10 Score=24.65 Aligned_cols=8 Identities=38% Similarity=1.219 Sum_probs=3.8
Q ss_pred CCCccccc
Q 019980 320 CPVCSAEV 327 (333)
Q Consensus 320 CPvCR~~V 327 (333)
||+|++.+
T Consensus 8 CP~C~~~l 15 (34)
T 3mjh_B 8 CPQCMKSL 15 (34)
T ss_dssp CTTTCCEE
T ss_pred CcHHHHHc
Confidence 55554443
No 182
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=36.95 E-value=17 Score=31.19 Aligned_cols=45 Identities=13% Similarity=0.320 Sum_probs=22.0
Q ss_pred ccccccccCC-CCeeEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 019980 283 CVICRLDYED-GETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 283 C~ICLe~f~~-gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~ 328 (333)
|..|...+.. +..... .=+..||..|..+-+..+..|+.|.+.|.
T Consensus 35 C~~C~~~L~~~g~~~~~-~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 35 CSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp CTTTCCBHHHHCSEEEE-ETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred cCCCCcccccCCceEEE-eCCccccccccccccccCCccccCCCccc
Confidence 6666555543 222211 12455666666554333235666666664
No 183
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.68 E-value=17 Score=27.47 Aligned_cols=32 Identities=19% Similarity=0.421 Sum_probs=23.0
Q ss_pred cccccccccCCCCe-eEEeCCCCcccHHHHHHH
Q 019980 282 SCVICRLDYEDGET-LTVLSCKHSYHSECINNW 313 (333)
Q Consensus 282 ~C~ICLe~f~~gd~-l~~LPCgH~FH~~CI~~W 313 (333)
.|.+|...|..-.. .-.-.||.+||..|....
T Consensus 16 ~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 16 NCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp SCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred cCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 49999999975432 222359999999997553
No 184
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=34.88 E-value=15 Score=31.62 Aligned_cols=20 Identities=30% Similarity=0.668 Sum_probs=11.9
Q ss_pred CCCCcccHHHHHHHHhcCCCCCCcccc
Q 019980 300 SCKHSYHSECINNWLKINKVCPVCSAE 326 (333)
Q Consensus 300 PCgH~FH~~CI~~WL~~kksCPvCR~~ 326 (333)
.|||+|-. .....||+|..+
T Consensus 143 ~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 143 ICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp TTCCEEES-------CCCSBCTTTCCB
T ss_pred CCCCeeCC-------CCCCCCCCCCCC
Confidence 36666541 233479999753
No 185
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=34.77 E-value=15 Score=26.44 Aligned_cols=40 Identities=25% Similarity=0.590 Sum_probs=27.8
Q ss_pred cccccccccCC---CCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 019980 282 SCVICRLDYED---GETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 330 (333)
Q Consensus 282 ~C~ICLe~f~~---gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~s 330 (333)
.|+.|-..+.. ... .+..=+..||..|+ +|-.|++.|...
T Consensus 17 ~C~~C~~~I~~~g~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 59 (77)
T 2egq_A 17 KCAGCKNPITGFGKGSS-VVAYEGQSWHDYCF--------HCKKCSVNLANK 59 (77)
T ss_dssp CCSSSCCCCCCCSSCCC-EEEETTEEEETTTC--------BCSSSCCBCTTS
T ss_pred cCcccCCcccCCCCCce-eEEECcceeCcccC--------EehhcCCCCCCC
Confidence 39999999885 222 22334778998775 689999888643
No 186
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=34.41 E-value=8.5 Score=23.94 Aligned_cols=13 Identities=23% Similarity=0.718 Sum_probs=9.0
Q ss_pred CCCCCCccccccC
Q 019980 317 NKVCPVCSAEVST 329 (333)
Q Consensus 317 kksCPvCR~~V~~ 329 (333)
+..||+|+..++.
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 3469999877653
No 187
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=33.84 E-value=15 Score=31.43 Aligned_cols=43 Identities=19% Similarity=0.410 Sum_probs=28.4
Q ss_pred cccccccccC--CCCeeEEeCCCCcccHHHHHHHHhcCC--CCCCccc
Q 019980 282 SCVICRLDYE--DGETLTVLSCKHSYHSECINNWLKINK--VCPVCSA 325 (333)
Q Consensus 282 ~C~ICLe~f~--~gd~l~~LPCgH~FH~~CI~~WL~~kk--sCPvCR~ 325 (333)
.|+||...|. .+-......|+|.+|..|= .|+.... .|-+|++
T Consensus 70 ~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 70 HCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp BCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred cchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 3999999864 3334445569999999996 2443222 4666654
No 188
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=33.74 E-value=8.7 Score=38.01 Aligned_cols=16 Identities=19% Similarity=-0.016 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 019980 71 ALARTLQEQERAYMML 86 (333)
Q Consensus 71 ~~a~~lq~qe~~y~~~ 86 (333)
.++..|...-..-.+|
T Consensus 333 e~e~~l~~DfeIG~~I 348 (417)
T 2ayu_A 333 DLEERLALDYSIGEQL 348 (417)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444554433333344
No 189
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=33.48 E-value=27 Score=34.20 Aligned_cols=42 Identities=29% Similarity=0.601 Sum_probs=27.6
Q ss_pred cccccccccCCCCeeEEe--CCCCcccHHHHHHHHhc----------CCCCCCcccc
Q 019980 282 SCVICRLDYEDGETLTVL--SCKHSYHSECINNWLKI----------NKVCPVCSAE 326 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~L--PCgH~FH~~CI~~WL~~----------kksCPvCR~~ 326 (333)
-|.||-.. ++.+..= .|...||..||..+|.. .=.|=+|.-.
T Consensus 95 yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 95 YCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred cceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 37777643 2222222 49999999999999932 2378888643
No 190
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.41 E-value=18 Score=26.44 Aligned_cols=39 Identities=15% Similarity=0.474 Sum_probs=25.5
Q ss_pred cccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
.|+.|-..+.....+ +..=+..||..|+ +|-.|++.|..
T Consensus 17 ~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 2ehe_A 17 TCAECQQLIGHDSRE-LFYEDRHFHEGCF--------RCCRCQRSLAD 55 (82)
T ss_dssp BCTTTCCBCCSSCCB-CCCSSCCCBTTTS--------BCTTTCCBCSS
T ss_pred cCccCCCccccCcEE-EEeCCccccccCC--------eecCCCCccCC
Confidence 399998888743222 2224677887665 58888887753
No 191
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=33.29 E-value=7.1 Score=28.99 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=13.6
Q ss_pred HHHHhcCCCCCCcccccc
Q 019980 311 NNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 311 ~~WL~~kksCPvCR~~V~ 328 (333)
.+||..--.||+|+.++.
T Consensus 4 d~~LLeiL~CP~ck~~L~ 21 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLR 21 (67)
T ss_dssp CGGGTCCCBCTTTCCBCE
T ss_pred CHHHHHHhCCCCCCCcCe
Confidence 456777778999988765
No 192
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=32.49 E-value=4.3 Score=29.32 Aligned_cols=35 Identities=23% Similarity=0.566 Sum_probs=24.0
Q ss_pred ccccccccCCCC--eeEEeC---CCCcccHHHHHHHHhcC
Q 019980 283 CVICRLDYEDGE--TLTVLS---CKHSYHSECINNWLKIN 317 (333)
Q Consensus 283 C~ICLe~f~~gd--~l~~LP---CgH~FH~~CI~~WL~~k 317 (333)
|+-|...++... ...+.. |++.|+..|..+|-...
T Consensus 9 CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 9 CPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred CcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 888888776433 222222 88999999999986543
No 193
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=32.08 E-value=23 Score=26.72 Aligned_cols=45 Identities=18% Similarity=0.406 Sum_probs=25.7
Q ss_pred CcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 281 FSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
+.|.+|...+... .. ...=+..||..|..+ .....|..|.+.|.+
T Consensus 34 F~C~~C~~~L~~~-~~-~~~~g~~yC~~cy~~--~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 34 FRCAKCLHPLANE-TF-VAKDNKILCNKCTTR--EDSPKCKGCFKAIVA 78 (101)
T ss_dssp CCCSSSCCCTTSS-CC-EEETTEEECHHHHTT--CCCCBCSSSCCBCCS
T ss_pred CcccccCCCCCcC-ee-ECcCCEEEChhHhhh--hcCCccccCCCcccc
Confidence 5566666665322 11 112345677777633 344678899888864
No 194
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=31.76 E-value=6.6 Score=34.82 Aligned_cols=9 Identities=33% Similarity=1.084 Sum_probs=7.0
Q ss_pred CCCCCcccc
Q 019980 318 KVCPVCSAE 326 (333)
Q Consensus 318 ksCPvCR~~ 326 (333)
..||+|...
T Consensus 187 ~~CP~C~~~ 195 (202)
T 1yuz_A 187 EKCPICFRP 195 (202)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCCCC
Confidence 489999764
No 195
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=31.50 E-value=11 Score=31.67 Aligned_cols=26 Identities=23% Similarity=0.658 Sum_probs=16.0
Q ss_pred EEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 019980 297 TVLSCKHSYHSECINNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 297 ~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~ 328 (333)
+...|+|.|-.. .....||.|..++.
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSKVK 159 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCBEE
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCcce
Confidence 344588887432 22347999987653
No 196
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=31.33 E-value=22 Score=27.32 Aligned_cols=30 Identities=20% Similarity=0.738 Sum_probs=19.4
Q ss_pred cccccccccCCCCeeEEe--CCCCcccHHHHHH
Q 019980 282 SCVICRLDYEDGETLTVL--SCKHSYHSECINN 312 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~L--PCgH~FH~~CI~~ 312 (333)
.|.||... ..|-.+..- .|.-.||..|..+
T Consensus 19 ~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 19 TCYLCKQK-GVGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CBTTTTBC-CSSCEEECSCTTTCCEEEHHHHHH
T ss_pred CCcCCCCC-CCcEeEecCCCCCCCcCcHHHHHH
Confidence 39999653 124333222 3889999999865
No 197
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=31.23 E-value=3.4 Score=31.56 Aligned_cols=19 Identities=16% Similarity=0.641 Sum_probs=14.5
Q ss_pred eEEeC-CCCcccHHHHHHHH
Q 019980 296 LTVLS-CKHSYHSECINNWL 314 (333)
Q Consensus 296 l~~LP-CgH~FH~~CI~~WL 314 (333)
.++.| |++.||..|-.+|=
T Consensus 43 ~v~C~~C~~~FC~~C~~~w~ 62 (86)
T 2ct7_A 43 EATCPQCHQTFCVRCKRQWE 62 (86)
T ss_dssp CEECTTTCCEECSSSCSBCC
T ss_pred ceEeCCCCCccccccCCchh
Confidence 35566 99999988888773
No 198
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=29.97 E-value=7.8 Score=30.33 Aligned_cols=40 Identities=25% Similarity=0.512 Sum_probs=24.5
Q ss_pred cccccccccCCCCeeEEeCCC---CcccHHHHHHHHhc----CCCCCC-ccc
Q 019980 282 SCVICRLDYEDGETLTVLSCK---HSYHSECINNWLKI----NKVCPV-CSA 325 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCg---H~FH~~CI~~WL~~----kksCPv-CR~ 325 (333)
-| ||..... +..+..=.|. .-||..||. |.. +-.||. |++
T Consensus 28 yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 28 YC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred EE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 37 8987543 4322222344 679999995 332 347999 974
No 199
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=29.75 E-value=28 Score=29.75 Aligned_cols=37 Identities=22% Similarity=0.602 Sum_probs=27.0
Q ss_pred ccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 019980 283 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 328 (333)
Q Consensus 283 C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~ 328 (333)
|..|-..+...+.++. .-++.||..|+ +|-.|++.|.
T Consensus 72 C~~C~~~I~~~e~~i~-a~~~~~H~~CF--------~C~~C~~~L~ 108 (188)
T 1rut_X 72 CSACGQSIPASELVMR-AQGNVYHLKCF--------TCSTCRNRLV 108 (188)
T ss_dssp CTTTCCEECTTSEEEE-ETTEEECGGGC--------BCTTTCCBCC
T ss_pred cccCCCccccCcEEEE-cCCCEEeCCCC--------eECCCCCCCC
Confidence 9999888876554332 35788998884 6888888774
No 200
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=29.52 E-value=28 Score=29.12 Aligned_cols=43 Identities=26% Similarity=0.643 Sum_probs=0.0
Q ss_pred CCcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccCCC
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTSG 331 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~s~ 331 (333)
...|..|-..+...+.++.. -++.||..|. .|-.|++.|....
T Consensus 65 ~~~C~~C~~~I~~~~~v~~a-~~~~~H~~CF--------~C~~C~~~L~~g~ 107 (169)
T 2rgt_A 65 GTKCAACQLGIPPTQVVRRA-QDFVYHLHCF--------ACVVCKRQLATGD 107 (169)
T ss_dssp SCBCTTTCCBCCTTSEEEEE-TTEEEEGGGC--------BCTTTCCBCCTTC
T ss_pred cccccccccccCCCcEEEEc-CCceEeeCCC--------cCCCCCCCCCCCC
No 201
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=29.33 E-value=15 Score=31.60 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=5.7
Q ss_pred ccccccccCCC
Q 019980 283 CVICRLDYEDG 293 (333)
Q Consensus 283 C~ICLe~f~~g 293 (333)
|+.|-..+..+
T Consensus 118 C~~C~~~I~~~ 128 (192)
T 1b8t_A 118 CPRCGQAVYAA 128 (192)
T ss_dssp CTTTSCEECSS
T ss_pred CCCCCCEecCc
Confidence 55555555443
No 202
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=28.93 E-value=57 Score=25.58 Aligned_cols=45 Identities=18% Similarity=0.381 Sum_probs=28.0
Q ss_pred CcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 019980 281 FSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 281 ~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
+.|..|...+... . ....=+..||..|..+ .....|+.|.+.|.+
T Consensus 31 F~C~~C~~~L~~~-~-f~~~~g~~yC~~cy~~--~~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 31 FCCFDCDSILAGE-I-YVMVNDKPVCKPCYVK--NHAVVCQGCHNAIDP 75 (126)
T ss_dssp SBCTTTCCBCTTS-E-EEEETTEEEEHHHHHH--HSCCBCTTTCSBCCT
T ss_pred CCcCCCCCCCCcC-E-EEeECCEEechHHhCc--CcCccCcccCCcCCc
Confidence 3477777776532 2 2223466777777755 345678888888874
No 203
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=28.71 E-value=12 Score=35.75 Aligned_cols=11 Identities=18% Similarity=0.045 Sum_probs=0.0
Q ss_pred CCCCcccccCC
Q 019980 98 SWEAGSYLHDE 108 (333)
Q Consensus 98 ~~~~~~y~~~~ 108 (333)
-.+.+++.-|.
T Consensus 285 ~~~~~~~~~~~ 295 (335)
T 4fp9_B 285 TSDDKRASLDE 295 (335)
T ss_dssp -----------
T ss_pred chhhhhhcccc
Confidence 34666666554
No 204
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=27.35 E-value=51 Score=25.26 Aligned_cols=38 Identities=21% Similarity=0.442 Sum_probs=27.4
Q ss_pred cccccccccCCCC---eeEEeCCCCcccHHHHHHHHhcCCCCCC
Q 019980 282 SCVICRLDYEDGE---TLTVLSCKHSYHSECINNWLKINKVCPV 322 (333)
Q Consensus 282 ~C~ICLe~f~~gd---~l~~LPCgH~FH~~CI~~WL~~kksCPv 322 (333)
.|.+|........ -.+.+-|+-.+|..|+.+. .+.|++
T Consensus 40 ~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~~---~~eC~l 80 (84)
T 1r79_A 40 KCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESL---LTKCSG 80 (84)
T ss_dssp BCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHC---CSCBCC
T ss_pred EeCCCCCEeCCccCCCCCCCcccChhHHHHHHHhc---cCcCCC
Confidence 4999988754322 3455669999999999884 566765
No 205
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=27.12 E-value=27 Score=33.15 Aligned_cols=32 Identities=22% Similarity=0.513 Sum_probs=23.9
Q ss_pred CcccccccccC--CCCeeEEeCCCCcccHHHHHH
Q 019980 281 FSCVICRLDYE--DGETLTVLSCKHSYHSECINN 312 (333)
Q Consensus 281 ~~C~ICLe~f~--~gd~l~~LPCgH~FH~~CI~~ 312 (333)
..|.+|...|. .......-.|+..+|..|...
T Consensus 358 t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 358 TSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp CBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 34999998874 233455556999999999875
No 206
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=26.73 E-value=23 Score=24.78 Aligned_cols=39 Identities=26% Similarity=0.527 Sum_probs=27.0
Q ss_pred cccccccccCCCCeeEEeCCCCccc--HHHHHHHHhcCCCCCCccccccC
Q 019980 282 SCVICRLDYEDGETLTVLSCKHSYH--SECINNWLKINKVCPVCSAEVST 329 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LPCgH~FH--~~CI~~WL~~kksCPvCR~~V~~ 329 (333)
.|+.|-..+..++.. +..-+..|| ..|+ +|-.|++.|..
T Consensus 4 ~C~~C~~~I~~~~~~-v~a~~~~wH~~~~CF--------~C~~C~~~L~~ 44 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQR-VTYNNFSWHASTECF--------LCSCCSKCLIG 44 (65)
T ss_dssp ECTTTSSEECTTSCE-EEETTEEEETTTTTS--------BCTTTCCBCTT
T ss_pred CCcCCCCeeccCceE-EEECCCccCCCCCCE--------ECCCCCCcCCC
Confidence 399999988864222 223478899 8775 68888888754
No 207
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=25.69 E-value=7.4 Score=28.93 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=11.4
Q ss_pred HHHhcCCCCCCcccccc
Q 019980 312 NWLKINKVCPVCSAEVS 328 (333)
Q Consensus 312 ~WL~~kksCPvCR~~V~ 328 (333)
+||..--.||+|+..+.
T Consensus 3 ~~LL~iL~CP~ck~~L~ 19 (68)
T 2jr6_A 3 KKFLDILVCPVTKGRLE 19 (68)
T ss_dssp CSSSCCCBCSSSCCBCE
T ss_pred hHHhhheECCCCCCcCe
Confidence 35555567888887764
No 208
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=25.42 E-value=7.5 Score=27.75 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=12.2
Q ss_pred HHHhcCCCCCCcccccc
Q 019980 312 NWLKINKVCPVCSAEVS 328 (333)
Q Consensus 312 ~WL~~kksCPvCR~~V~ 328 (333)
+||..--.||+|+..+.
T Consensus 5 ~~lL~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 5 AGLLEILACPACHAPLE 21 (56)
T ss_dssp CSCTTSCCCSSSCSCEE
T ss_pred HHHHhheeCCCCCCcce
Confidence 45556668999998754
No 209
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=24.84 E-value=8.2 Score=30.66 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=26.3
Q ss_pred ccccccccCCCCeeEEe-CCCCcccHHHHHHHHh--------cCCCCCCcccc
Q 019980 283 CVICRLDYEDGETLTVL-SCKHSYHSECINNWLK--------INKVCPVCSAE 326 (333)
Q Consensus 283 C~ICLe~f~~gd~l~~L-PCgH~FH~~CI~~WL~--------~kksCPvCR~~ 326 (333)
|..|........+++.. -|...||..|+..-.. ....||.|+..
T Consensus 62 c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 62 VDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp BCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred ccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 55555555444445444 4999999999864321 11359999754
No 210
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=24.73 E-value=25 Score=28.20 Aligned_cols=25 Identities=24% Similarity=0.678 Sum_probs=16.6
Q ss_pred eEEeCCCCcccHHHHHHHHhcCC-CCCCcccc
Q 019980 296 LTVLSCKHSYHSECINNWLKINK-VCPVCSAE 326 (333)
Q Consensus 296 l~~LPCgH~FH~~CI~~WL~~kk-sCPvCR~~ 326 (333)
.+...|+|.|-. ..... .||.|...
T Consensus 74 ~~C~~CG~~~e~------~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 74 LECKDCSHVFKP------NALDYGVCEKCHSK 99 (119)
T ss_dssp EECSSSSCEECS------CCSTTCCCSSSSSC
T ss_pred EEcCCCCCEEeC------CCCCCCcCccccCC
Confidence 444568888765 13346 79999766
No 211
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=24.63 E-value=28 Score=29.48 Aligned_cols=43 Identities=26% Similarity=0.643 Sum_probs=0.0
Q ss_pred CCcccccccccCCCCeeEEeCCCCcccHHHHHHHHhcCCCCCCccccccCCC
Q 019980 280 GFSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTSG 331 (333)
Q Consensus 280 ~~~C~ICLe~f~~gd~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~V~~s~ 331 (333)
...|..|-..+...+.++.. -+..||..|+ +|-.|++.|....
T Consensus 119 ~~kC~~C~~~I~~~~~v~~a-~~~~~H~~CF--------~C~~C~~~L~~g~ 161 (182)
T 2jtn_A 119 GTKCAACQLGIPPTQVVRRA-QDFVYHLHCF--------ACVVCKRQLATGD 161 (182)
T ss_dssp SCCCTTTCCCCCSSCCCCEE-TTEECCTTTC--------CCTTTCCCCCTTC
T ss_pred ccccccCCCccCCCceEEec-CCCCEEeCCC--------cCCCCCCCCCCCC
No 212
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=23.73 E-value=8.6 Score=36.45 Aligned_cols=39 Identities=23% Similarity=0.460 Sum_probs=24.3
Q ss_pred ccccccccCCC--------CeeEEeCCCCcccHHHHHHHHhcCCCCCCcccc
Q 019980 283 CVICRLDYEDG--------ETLTVLSCKHSYHSECINNWLKINKVCPVCSAE 326 (333)
Q Consensus 283 C~ICLe~f~~g--------d~l~~LPCgH~FH~~CI~~WL~~kksCPvCR~~ 326 (333)
|+||-..-..+ +..+ +.+|.-|-..|--.+..||.|-..
T Consensus 185 CPvCGs~P~~s~l~~~g~~~G~R-----~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 185 CPACGSPPMAGMIRQGGKETGLR-----YLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp CTTTCCCEEEEEEEC----CCEE-----EEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCcCceeEEeecCCCCCcE-----EEEeCCCCCEEeecCcCCcCCCCC
Confidence 99997654321 1222 234445666677778899999654
No 213
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=23.65 E-value=7.4 Score=28.93 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=10.1
Q ss_pred HHhcCCCCCCcccccc
Q 019980 313 WLKINKVCPVCSAEVS 328 (333)
Q Consensus 313 WL~~kksCPvCR~~V~ 328 (333)
||..--.||+|+..+.
T Consensus 4 ~LL~iL~CP~ck~~L~ 19 (68)
T 2hf1_A 4 KFLEILVCPLCKGPLV 19 (68)
T ss_dssp CCEEECBCTTTCCBCE
T ss_pred HHhhheECCCCCCcCe
Confidence 4444456888887664
No 214
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.45 E-value=39 Score=26.40 Aligned_cols=13 Identities=0% Similarity=-0.335 Sum_probs=6.0
Q ss_pred CCcccHHHHHHHH
Q 019980 302 KHSYHSECINNWL 314 (333)
Q Consensus 302 gH~FH~~CI~~WL 314 (333)
+..||..|..+-+
T Consensus 52 g~~yC~~~y~~~f 64 (114)
T 1j2o_A 52 GRKLCRRDYLRLG 64 (114)
T ss_dssp TBCCCHHHHHHHH
T ss_pred CeeechHHHHHHh
Confidence 3345555554433
No 215
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=23.30 E-value=21 Score=31.03 Aligned_cols=8 Identities=38% Similarity=1.344 Sum_probs=6.3
Q ss_pred CCCCcccc
Q 019980 319 VCPVCSAE 326 (333)
Q Consensus 319 sCPvCR~~ 326 (333)
.||+|..+
T Consensus 173 ~CP~C~~~ 180 (191)
T 1lko_A 173 LCPACAHP 180 (191)
T ss_dssp BCTTTCCB
T ss_pred CCCCCcCC
Confidence 79999764
No 216
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=23.18 E-value=17 Score=22.29 Aligned_cols=11 Identities=36% Similarity=1.002 Sum_probs=7.5
Q ss_pred CCCCccccccC
Q 019980 319 VCPVCSAEVST 329 (333)
Q Consensus 319 sCPvCR~~V~~ 329 (333)
.||+|...++.
T Consensus 8 qcpvcqq~mpa 18 (29)
T 3vhs_A 8 QCPVCQQMMPA 18 (29)
T ss_dssp ECTTTCCEEEG
T ss_pred eChHHHHhCcH
Confidence 58888776653
No 217
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=22.32 E-value=7.9 Score=28.93 Aligned_cols=16 Identities=38% Similarity=0.667 Sum_probs=10.6
Q ss_pred HHhcCCCCCCcccccc
Q 019980 313 WLKINKVCPVCSAEVS 328 (333)
Q Consensus 313 WL~~kksCPvCR~~V~ 328 (333)
||..--.||+|+..+.
T Consensus 4 ~LL~iL~CP~ck~~L~ 19 (70)
T 2js4_A 4 RLLDILVCPVCKGRLE 19 (70)
T ss_dssp CCCCCCBCTTTCCBEE
T ss_pred HHhhheECCCCCCcCE
Confidence 4455567888887664
No 218
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=21.74 E-value=23 Score=32.73 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=15.7
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q 019980 66 VDADLALARTLQEQERAYMML 86 (333)
Q Consensus 66 ~~~d~~~a~~lq~qe~~y~~~ 86 (333)
...+..||.+|.+.-..+.+.
T Consensus 194 ~~~d~eig~~Ikd~I~P~al~ 214 (264)
T 2zd7_A 194 FPHGDSLASLFSEEIYPFCVK 214 (264)
T ss_dssp STTHHHHHHHHHHTHHHHHHH
T ss_pred ccCchhHHHHHHhhhccCHHH
Confidence 346889999998877776664
No 219
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=21.45 E-value=3.4 Score=30.29 Aligned_cols=44 Identities=25% Similarity=0.591 Sum_probs=26.6
Q ss_pred cccccccc-cCCCCeeEEeCCCCcccHHHHHHHHhcC-C---CCCCccc
Q 019980 282 SCVICRLD-YEDGETLTVLSCKHSYHSECINNWLKIN-K---VCPVCSA 325 (333)
Q Consensus 282 ~C~ICLe~-f~~gd~l~~LPCgH~FH~~CI~~WL~~k-k---sCPvCR~ 325 (333)
.|.||+.. |..|---+..-|.-.||..|-..|-.++ + .|-+||+
T Consensus 11 ~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 11 TCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp CCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred hhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 49999864 4444333334477788888766554322 2 4766665
No 220
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=20.36 E-value=31 Score=32.88 Aligned_cols=39 Identities=15% Similarity=0.299 Sum_probs=29.4
Q ss_pred cccccccccCCCCeeEEeC-CCCcccHHHHHHHHhcCCCCCCcccc
Q 019980 282 SCVICRLDYEDGETLTVLS-CKHSYHSECINNWLKINKVCPVCSAE 326 (333)
Q Consensus 282 ~C~ICLe~f~~gd~l~~LP-CgH~FH~~CI~~WL~~kksCPvCR~~ 326 (333)
.|++=+..+..|...+..| ||-.||... +.+.||+|.-.
T Consensus 264 iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~------kG~lC~vC~l~ 303 (320)
T 3mkr_B 264 ICAASYRPIYRGKPVEKCPLSGACYSPEF------KGQICKVTTVT 303 (320)
T ss_dssp BBTTTCCBCCTTSCCEECTTTCCEECGGG------TTSBCTTTSSB
T ss_pred eecCCCccccCCCCCccCCCCCCeechhh------CCCCCCCCcCc
Confidence 3777777766788888888 999999732 35679999654
No 221
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.28 E-value=22 Score=26.18 Aligned_cols=41 Identities=29% Similarity=0.598 Sum_probs=25.1
Q ss_pred ccccccccCCCCeeEEeCC---CCcccHHHHHHHHhc----CCCCCCccccc
Q 019980 283 CVICRLDYEDGETLTVLSC---KHSYHSECINNWLKI----NKVCPVCSAEV 327 (333)
Q Consensus 283 C~ICLe~f~~gd~l~~LPC---gH~FH~~CI~~WL~~----kksCPvCR~~V 327 (333)
| ||.... .+..+..-.| ..-||..||. |.. +-.||.|+...
T Consensus 9 C-~C~~~~-~g~MI~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 9 C-ICNQVS-YGEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp S-TTSCCC-CSSEECCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHHH
T ss_pred E-EcCCCC-CCCEeEeCCCCCCccCCcccccc--cCcCCCCCEECCCCCccc
Confidence 6 587763 3433333334 3679999996 322 23699997654
Done!