BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019981
(333 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H112|PGL1A_ARATH PGR5-like protein 1A, chloroplastic OS=Arabidopsis thaliana
GN=PGRL1A PE=1 SV=1
Length = 324
Score = 470 bits (1209), Expect = e-132, Method: Compositional matrix adjust.
Identities = 222/287 (77%), Positives = 258/287 (89%), Gaps = 7/287 (2%)
Query: 47 GRQFTVRRRSFVLPSKATTDQQGQVEGDEVVDSKILQYCSIDKKEKKSLGELEQEFLQAL 106
G+ ++RRR F+LP+KATT+Q G V GD V DS +L YCSI+K EKK++GE+EQEFLQAL
Sbjct: 45 GKSISLRRRVFLLPAKATTEQSGPVGGDNV-DSNVLPYCSINKAEKKTIGEMEQEFLQAL 103
Query: 107 QAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYD 166
Q+FYY+GKA+MSNEEFDNLKEELMWEGSSVVMLSS EQ+FLEASMAYV+G PI++DEEYD
Sbjct: 104 QSFYYDGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILNDEEYD 163
Query: 167 KLKQKLKMEGSEIVVEGPRCSLRSRKVYSDLSVDYLKMLLLNVPATVVALGLFFFLDDIT 226
KLK KLK++GS+IV EGPRCSLRS+KVYSDL+VDY KMLLLNVPATVVALGLFFFLDDIT
Sbjct: 164 KLKLKLKIDGSDIVSEGPRCSLRSKKVYSDLAVDYFKMLLLNVPATVVALGLFFFLDDIT 223
Query: 227 GFEITYLLELPEPFSFIFTWFAAVPLIVYLSQSLTKLIVRESLILKGPCPNCGTENVSFF 286
GFEITY++ELPEP+SFIFTWFAAVP+IVYL+ S+TKLI+++ LILKGPCPNCGTEN SFF
Sbjct: 224 GFEITYIMELPEPYSFIFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPNCGTENTSFF 283
Query: 287 GTILSISSGGTTNTINCSNLTFCFSCGTTMVYDSNTRLITLPEGSEA 333
GTILSISSGG TNT+ C+N CGT MVYDS +RLITLPEGS+A
Sbjct: 284 GTILSISSGGKTNTVKCTN------CGTAMVYDSGSRLITLPEGSQA 324
>sp|Q8GYC7|PGL1B_ARATH PGR5-like protein 1B, chloroplastic OS=Arabidopsis thaliana
GN=PGRL1B PE=1 SV=1
Length = 313
Score = 450 bits (1158), Expect = e-126, Method: Compositional matrix adjust.
Identities = 224/288 (77%), Positives = 253/288 (87%), Gaps = 7/288 (2%)
Query: 46 NGRQFTVRRRSFVLPSKATTDQQGQVEGDEVVDSKILQYCSIDKKEKKSLGELEQEFLQA 105
+GR ++RRR +LP KA+TDQ GQV G+EV DSKIL YCSI+K EK+++GE+EQEFLQA
Sbjct: 33 HGRSISLRRRLTLLPLKASTDQSGQVGGEEV-DSKILPYCSINKNEKRTIGEMEQEFLQA 91
Query: 106 LQAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEY 165
+Q+FYYEGKA+MSNEEFDNLKEELMWEGSSVVMLSS EQ+FLEASMAYV+G PI+SDEEY
Sbjct: 92 MQSFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILSDEEY 151
Query: 166 DKLKQKLKMEGSEIVVEGPRCSLRSRKVYSDLSVDYLKMLLLNVPATVVALGLFFFLDDI 225
DKLK KLKM+GSEIV EGPRCSLRS+KVYSDL++DY KM LLNVPATVVALGLFFFLDDI
Sbjct: 152 DKLKMKLKMDGSEIVCEGPRCSLRSKKVYSDLAIDYFKMFLLNVPATVVALGLFFFLDDI 211
Query: 226 TGFEITYLLELPEPFSFIFTWFAAVPLIVYLSQSLTKLIVRESLILKGPCPNCGTENVSF 285
TGFEITYLLELPEPFSFIFTWFAAVP IVYL+ SLTKLI+++ LILKGPCPNCGTENVSF
Sbjct: 212 TGFEITYLLELPEPFSFIFTWFAAVPAIVYLALSLTKLILKDFLILKGPCPNCGTENVSF 271
Query: 286 FGTILSISSGGTTNTINCSNLTFCFSCGTTMVYDSNTRLITLPEGSEA 333
FGTILSI + TN + CS CGT MVYDS +RLITLPEG +A
Sbjct: 272 FGTILSIPNDSNTNNVKCSG------CGTEMVYDSGSRLITLPEGGKA 313
>sp|P24200|MCRA_ECOLI 5-methylcytosine-specific restriction enzyme A OS=Escherichia coli
(strain K12) GN=mcrA PE=4 SV=2
Length = 277
Score = 35.8 bits (81), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 20/83 (24%)
Query: 258 QSLTKLIVRESLIL-------KGPCPNCGTENVSFF----------GTILSISSGGTTNT 300
+ L K+ VR+ ++ KG C NCG +N F+ ++ +SSGG T
Sbjct: 183 ERLQKVYVRDPMVKAWILQQSKGICENCG-KNAPFYLNDGNPYLEVHHVIPLSSGGADTT 241
Query: 301 INCSNLTFCFSCGTTMVYDSNTR 323
NC + C +C + Y N +
Sbjct: 242 DNC--VALCPNCHRELHYSKNAK 262
>sp|A6LA55|DNLJ_PARD8 DNA ligase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM
20701 / NCTC 11152) GN=ligA PE=3 SV=1
Length = 664
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 153 YVAGKPIMSDEEYDKLKQKLK-MEGSEIVVEGPRCSLRSRKVYSDLSVDYLKMLLLNVPA 211
YV P +SD E+DK+ ++L+ +E + P +R+V SDLS ++ + ++ P
Sbjct: 21 YVLSAPTISDFEFDKMMKELQELEAAHPEFADPDSP--TRRVGSDLSKEF-EQVVHKYP- 76
Query: 212 TVVALGLFFFLDDITGFEITYLLELPEPFSFI--FTWFAAVPLIVYLSQSLTKLIVR 266
+++LG + D+I F + L EPF + + + Y LT+ + R
Sbjct: 77 -MLSLGNTYSEDEIRDFYDRTVRSLNEPFEIVAELKYDGTSISLTYEKGRLTRAVTR 132
>sp|P55065|PLTP_MOUSE Phospholipid transfer protein OS=Mus musculus GN=Pltp PE=1 SV=1
Length = 493
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 99/230 (43%), Gaps = 33/230 (14%)
Query: 37 AHSNSNTQFNGRQFTVRRRSFVLPSKATTDQQGQVEGDEVV----------DSKILQYCS 86
++ N + +F G F ++ ++ LP++A + Q+E DE + DS + Y
Sbjct: 226 SNGNLDMEFRGAFFPLKEDNWSLPNRAV---EPQLEDDERMVYVAFSEFFFDSAMESYFQ 282
Query: 87 IDKKEKKSLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELMWEGSS---VVMLSSAE 143
+ +G+ L L Y G V+ + N +L E +S + S
Sbjct: 283 AGALQLTLVGDKVPSDLDMLLRATYFGSIVLLSPTVINSPLKLKLEATSPPRCTIKPSGT 342
Query: 144 QKFLEASMAYVAGKPIMSDEEYDK------LKQKLKMEGSEIVVEGPRCSLRSRKVYSDL 197
+ AS+ P++ + E K L KL + G + V + LR ++YS+
Sbjct: 343 TISITASVTITLAPPMLPEVELSKMIMEGRLSAKLTLRGKALRV---KLDLRRFQIYSNQ 399
Query: 198 S-VDYLKMLLLNVP-ATVVALGLFFFLDDIT--GFEITYLLELPEPFSFI 243
S ++ L ++ L P T++ +G+ L++ T G +I LPE +F+
Sbjct: 400 SALESLALIPLQAPLKTLLQIGVMPLLNERTWRGVQI----PLPEGINFV 445
>sp|Q09441|YP83_CAEEL ARID domain-containing protein C08B11.3 OS=Caenorhabditis elegans
GN=C08B11.3 PE=4 SV=1
Length = 1244
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 24 PAAALAPFPSSSRAHSNSNTQFNGRQFTVRRRSFVLPSK--ATTDQQGQVEGDEVVDSKI 81
P + P PS HS+ Q NG +F RR+ LP + A + G+ + +++ + I
Sbjct: 570 PHTNVPPSPSILAHHSSGLVQQNGMKFD--RRTGNLPVRPIAPSTNSGESQLEQLTEKWI 627
Query: 82 LQYCSIDKKEKKSLGELEQEFLQALQAFYY 111
Q C + GEL ++ L+ Y+
Sbjct: 628 RQNCVFEPAMSTPRGELYAAYVDDLRNLYH 657
>sp|C6DJC3|LIGB_PECCP DNA ligase B OS=Pectobacterium carotovorum subsp. carotovorum
(strain PC1) GN=ligB PE=3 SV=1
Length = 562
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 88 DKKEKKSLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEEL 129
+ + KK + L Q+ Q +Y EGK+ ++++ +D L+E+L
Sbjct: 31 NTRSKKEIDALRQQLEQWDDVYYTEGKSPVADDVYDQLREQL 72
>sp|Q9Z758|TIG_CHLPN Trigger factor OS=Chlamydia pneumoniae GN=tig PE=3 SV=1
Length = 442
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 57 FVLPSKATTDQQGQVEGDEVVDSKILQYCSIDKKEKKS---LGELEQEFLQALQAFYYEG 113
F LP+ ++ + +++++++++QYCS ++ EK+ + E E++ +AL+ +
Sbjct: 310 FELPTSLLEERISLITREKLLNARLIQYCSDEELEKRKSELIKEAEEDATKALKLLFLTH 369
Query: 114 KAVMSNEEFDNLKEELMW 131
K + S+E+ +EEL +
Sbjct: 370 K-IFSDEKLTISREELQY 386
>sp|P34664|YOY6_CAEEL Uncharacterized protein ZK652.6 OS=Caenorhabditis elegans
GN=ZK652.6 PE=4 SV=2
Length = 575
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 276 PNCGT-ENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTTMVYDSNTRLITLPEGSEA 333
P GT E VS G + +G + CS+ CFSC TT Y + +P E+
Sbjct: 4 PLTGTHEGVSCDGCAFTAFAGNRYKCLRCSDYDLCFSCFTTKNYGDQQTIADIPIHDES 62
>sp|A7HJG6|DNLJ_FERNB DNA ligase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM
5306 / Rt17-B1) GN=ligA PE=3 SV=1
Length = 681
Score = 31.6 bits (70), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 153 YVAGKPIMSDEEYDKLKQKL 172
YV +P++SDEEYDKL ++L
Sbjct: 25 YVLAQPVISDEEYDKLMKRL 44
>sp|B7IDX6|DNLJ_THEAB DNA ligase OS=Thermosipho africanus (strain TCF52B) GN=ligA PE=3
SV=1
Length = 665
Score = 31.6 bits (70), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 153 YVAGKPIMSDEEYDKLKQKL 172
YV P++SDEEYDKL +KL
Sbjct: 25 YVLADPVISDEEYDKLLKKL 44
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,260,163
Number of Sequences: 539616
Number of extensions: 4678553
Number of successful extensions: 14536
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 14512
Number of HSP's gapped (non-prelim): 37
length of query: 333
length of database: 191,569,459
effective HSP length: 118
effective length of query: 215
effective length of database: 127,894,771
effective search space: 27497375765
effective search space used: 27497375765
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)