Query 019981
Match_columns 333
No_of_seqs 77 out of 79
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 09:59:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019981.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019981hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uq8_A DNA ligase; adenylated 93.4 0.066 2.2E-06 51.3 4.5 25 150-174 17-42 (322)
2 3jsl_A DNA ligase; NAD+-depend 92.5 0.093 3.2E-06 50.2 4.2 25 150-174 19-44 (318)
3 4glw_A DNA ligase; inhibitor, 92.2 0.026 8.8E-07 53.3 -0.0 25 150-174 16-41 (305)
4 1zau_A DNA ligase; AMP; HET: D 91.5 0.13 4.5E-06 49.3 4.0 24 151-174 29-53 (328)
5 1ta8_A DNA ligase, NAD-depende 91.4 0.14 4.9E-06 49.2 4.1 24 151-174 27-51 (332)
6 1b04_A Protein (DNA ligase); D 91.3 0.14 4.7E-06 49.0 3.9 24 151-174 22-46 (318)
7 4esj_A Type-2 restriction enzy 91.1 0.091 3.1E-06 49.3 2.4 51 256-322 22-72 (257)
8 4glx_A DNA ligase; inhibitor, 90.3 0.15 5.2E-06 52.3 3.3 25 150-174 19-44 (586)
9 4glw_A DNA ligase; inhibitor, 87.5 0.096 3.3E-06 49.5 -0.4 36 95-130 5-40 (305)
10 1qxf_A GR2, 30S ribosomal prot 86.4 0.58 2E-05 36.1 3.5 39 271-324 6-44 (66)
11 3j20_W 30S ribosomal protein S 86.0 0.76 2.6E-05 35.1 3.9 42 268-324 11-52 (63)
12 3uq8_A DNA ligase; adenylated 85.7 0.65 2.2E-05 44.5 4.3 35 95-129 6-40 (322)
13 1zau_A DNA ligase; AMP; HET: D 85.3 0.67 2.3E-05 44.4 4.2 37 94-130 16-52 (328)
14 1b04_A Protein (DNA ligase); D 85.3 0.67 2.3E-05 44.3 4.2 36 95-130 10-45 (318)
15 3jsl_A DNA ligase; NAD+-depend 85.2 0.73 2.5E-05 44.1 4.4 35 95-129 8-42 (318)
16 2owo_A DNA ligase; protein-DNA 85.2 0.52 1.8E-05 49.1 3.6 25 150-174 19-44 (671)
17 1ta8_A DNA ligase, NAD-depende 84.9 0.75 2.6E-05 44.2 4.3 37 94-130 14-50 (332)
18 4glx_A DNA ligase; inhibitor, 84.7 0.63 2.1E-05 47.7 3.9 36 95-130 8-43 (586)
19 1dgs_A DNA ligase; AMP complex 83.8 0.47 1.6E-05 49.4 2.5 26 150-175 21-47 (667)
20 2xzm_6 RPS27E; ribosome, trans 80.2 2 7E-05 34.2 4.4 44 269-327 29-72 (81)
21 3sgi_A DNA ligase; HET: DNA AM 79.2 0.27 9.3E-06 50.8 -1.1 25 150-174 28-53 (615)
22 1qyp_A RNA polymerase II; tran 78.7 1.2 4E-05 31.9 2.4 38 272-315 15-52 (57)
23 2owo_A DNA ligase; protein-DNA 77.8 1.5 5.2E-05 45.6 3.9 36 95-130 8-43 (671)
24 1pft_A TFIIB, PFTFIIBN; N-term 77.6 0.99 3.4E-05 31.4 1.7 28 274-316 7-34 (50)
25 3u5c_b RP61, YS20, 40S ribosom 77.4 1.9 6.3E-05 34.5 3.4 44 267-325 29-72 (82)
26 2k1p_A Zinc finger RAN-binding 77.2 1 3.5E-05 29.7 1.6 12 274-285 8-19 (33)
27 1nui_A DNA primase/helicase; z 76.4 1.1 3.9E-05 39.7 2.2 34 269-318 11-45 (255)
28 2lk0_A RNA-binding protein 5; 74.3 1.2 4.1E-05 29.1 1.3 12 274-285 7-18 (32)
29 1dgs_A DNA ligase; AMP complex 74.2 1.6 5.5E-05 45.4 2.9 36 95-130 10-45 (667)
30 3iz6_X 40S ribosomal protein S 73.4 1.7 5.7E-05 35.0 2.2 42 267-323 31-72 (86)
31 1dl6_A Transcription factor II 69.7 2.7 9.1E-05 30.7 2.4 29 274-317 13-41 (58)
32 3o9x_A Uncharacterized HTH-typ 69.3 1.3 4.4E-05 35.1 0.7 42 274-316 4-46 (133)
33 3j20_Y 30S ribosomal protein S 69.0 2.6 8.9E-05 30.2 2.2 32 268-315 15-46 (50)
34 3flo_B DNA polymerase alpha ca 68.8 1.5 5E-05 39.6 1.0 52 257-316 6-59 (206)
35 3sgi_A DNA ligase; HET: DNA AM 68.5 1.6 5.3E-05 45.2 1.3 36 95-130 17-52 (615)
36 1twf_L ABC10-alpha, DNA-direct 68.5 2.1 7E-05 32.8 1.7 41 270-327 26-67 (70)
37 3h0g_L DNA-directed RNA polyme 59.7 4.7 0.00016 30.5 2.2 40 270-326 19-59 (63)
38 1n0z_A ZNF265; zinc finger, RN 54.3 5.9 0.0002 27.8 1.8 22 274-315 16-39 (45)
39 2k4x_A 30S ribosomal protein S 53.3 8.1 0.00028 28.1 2.5 31 270-316 16-46 (55)
40 3gzf_A Replicase polyprotein 1 51.9 38 0.0013 27.7 6.4 66 113-190 18-94 (96)
41 1vq8_Z 50S ribosomal protein L 51.9 6 0.0002 31.1 1.7 30 272-317 27-56 (83)
42 3vc8_A RNA-directed RNA polyme 51.5 35 0.0012 27.9 6.1 67 112-190 12-90 (94)
43 2apo_B Ribosome biogenesis pro 49.1 5.6 0.00019 29.9 1.0 13 271-283 17-29 (60)
44 3p2a_A Thioredoxin 2, putative 44.4 10 0.00034 29.5 1.9 31 272-316 5-35 (148)
45 2aus_D NOP10, ribosome biogene 44.3 7.4 0.00025 29.3 1.1 13 271-283 16-28 (60)
46 3u5c_f 40S ribosomal protein S 44.2 13 0.00045 31.5 2.7 36 268-320 114-152 (152)
47 1l8d_A DNA double-strand break 44.1 5.5 0.00019 31.2 0.4 12 272-283 47-58 (112)
48 2qkd_A Zinc finger protein ZPR 43.1 7.4 0.00025 38.4 1.2 10 271-280 11-20 (404)
49 2fiy_A Protein FDHE homolog; F 42.5 13 0.00043 35.3 2.6 20 105-124 76-95 (309)
50 2qkd_A Zinc finger protein ZPR 41.9 14 0.00047 36.5 2.9 14 144-157 140-153 (404)
51 2xzf_A Formamidopyrimidine-DNA 39.9 11 0.00038 34.5 1.8 25 273-305 243-267 (271)
52 1wii_A Hypothetical UPF0222 pr 39.8 20 0.00067 28.4 2.9 36 273-318 24-59 (85)
53 3c1l_A Putative antioxidant de 39.3 33 0.0011 28.6 4.4 75 91-170 63-147 (188)
54 1ee8_A MUTM (FPG) protein; bet 39.0 15 0.0005 33.8 2.4 25 273-305 236-260 (266)
55 3u6p_A Formamidopyrimidine-DNA 38.8 11 0.00038 34.7 1.6 32 266-305 235-270 (273)
56 1tfi_A Transcriptional elongat 38.3 21 0.00073 25.3 2.7 16 272-287 9-24 (50)
57 1x3z_A Peptide: N-glycanase; h 38.0 20 0.00068 34.8 3.2 60 256-321 101-170 (335)
58 1k82_A Formamidopyrimidine-DNA 37.2 13 0.00045 34.0 1.8 25 273-305 241-265 (268)
59 1wd2_A Ariadne-1 protein homol 35.6 28 0.00097 25.3 3.0 34 273-316 7-44 (60)
60 1k3x_A Endonuclease VIII; hydr 34.4 15 0.00053 33.4 1.8 24 274-305 236-259 (262)
61 1dxg_A Desulforedoxin; non-hem 34.3 21 0.00071 23.6 1.9 27 275-318 9-35 (36)
62 2xzm_9 RPS31E; ribosome, trans 34.2 13 0.00045 33.1 1.2 36 268-320 109-145 (189)
63 2kdx_A HYPA, hydrogenase/ureas 34.1 14 0.00048 29.7 1.3 21 268-288 69-91 (119)
64 3k7a_M Transcription initiatio 34.0 17 0.00057 34.1 2.0 40 264-317 14-53 (345)
65 2pfx_A Uncharacterized peroxid 33.8 37 0.0012 28.4 3.9 75 91-170 66-150 (191)
66 2k5c_A Uncharacterized protein 33.5 11 0.00039 30.5 0.7 14 274-290 53-66 (95)
67 3lpe_B DNA-directed RNA polyme 32.7 18 0.0006 26.9 1.5 19 274-292 15-33 (59)
68 3ga8_A HTH-type transcriptiona 31.4 11 0.00037 28.2 0.2 11 274-284 38-48 (78)
69 1lko_A Rubrerythrin all-iron(I 30.7 16 0.00056 31.7 1.2 10 272-281 155-164 (191)
70 1pft_A TFIIB, PFTFIIBN; N-term 30.6 33 0.0011 23.4 2.6 21 299-325 4-26 (50)
71 2oyo_A Uncharacterized peroxid 29.3 53 0.0018 27.6 4.2 75 91-170 71-155 (196)
72 1d0q_A DNA primase; zinc-bindi 29.3 23 0.0008 27.7 1.8 31 271-314 36-66 (103)
73 3r8s_0 50S ribosomal protein L 27.8 17 0.00058 26.5 0.7 11 272-282 27-37 (56)
74 2cor_A Pinch protein; LIM doma 27.5 35 0.0012 24.9 2.4 38 272-317 15-52 (79)
75 2prr_A Alkylhydroperoxidase AH 27.4 42 0.0014 28.3 3.2 75 91-170 67-151 (197)
76 3v2d_5 50S ribosomal protein L 25.5 23 0.0008 26.2 1.1 10 273-282 31-40 (60)
77 3w0f_A Endonuclease 8-like 3; 24.3 43 0.0015 31.5 2.9 25 274-305 253-278 (287)
78 1ryq_A DNA-directed RNA polyme 24.0 24 0.00083 27.1 1.0 13 271-283 22-34 (69)
79 2zjr_Z 50S ribosomal protein L 23.7 27 0.00094 25.8 1.2 9 274-282 32-40 (60)
80 3m1m_A ORF904; primase, polyme 23.6 29 0.00098 33.8 1.6 68 107-204 209-277 (335)
81 3h0g_I DNA-directed RNA polyme 23.5 51 0.0017 26.5 2.8 16 272-287 72-87 (113)
82 3g5o_A Uncharacterized protein 23.4 74 0.0025 25.3 3.8 48 116-172 46-93 (108)
83 1gh9_A 8.3 kDa protein (gene M 22.9 33 0.0011 26.2 1.6 29 274-320 6-34 (71)
84 2f4m_A Peptide N-glycanase; gl 22.6 76 0.0026 30.0 4.2 29 256-284 63-93 (295)
85 2au3_A DNA primase; zinc ribbo 21.7 35 0.0012 32.5 1.7 31 271-314 33-63 (407)
86 1x68_A FHL5 protein; four-and- 21.6 29 0.001 24.8 1.0 41 273-317 6-46 (76)
87 3p8b_A DNA-directed RNA polyme 21.1 30 0.001 27.5 1.0 15 274-288 37-53 (81)
88 3ir9_A Peptide chain release f 21.1 43 0.0015 28.7 2.0 43 272-323 78-120 (166)
89 1wig_A KIAA1808 protein; LIM d 20.3 61 0.0021 23.2 2.5 36 274-317 7-42 (73)
90 2fiy_A Protein FDHE homolog; F 20.2 69 0.0024 30.2 3.4 17 270-286 180-197 (309)
No 1
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=93.35 E-value=0.066 Score=51.32 Aligned_cols=25 Identities=36% Similarity=0.643 Sum_probs=21.6
Q ss_pred HHhhhc-CCCccChHHHHHHHHHHhh
Q 019981 150 SMAYVA-GKPIMSDEEYDKLKQKLKM 174 (333)
Q Consensus 150 ~~AY~s-GkPimsDeeFD~LK~kLk~ 174 (333)
-.+||. |+|+|||+|||+|.++|+.
T Consensus 17 ~~~YY~~d~p~IsD~eYD~L~~eL~~ 42 (322)
T 3uq8_A 17 EYEYHVLDNPSVPDSEYDRLFHQLKA 42 (322)
T ss_dssp HHHHHTSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 457875 9999999999999998865
No 2
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=92.48 E-value=0.093 Score=50.25 Aligned_cols=25 Identities=40% Similarity=0.620 Sum_probs=21.0
Q ss_pred HHhhhc-CCCccChHHHHHHHHHHhh
Q 019981 150 SMAYVA-GKPIMSDEEYDKLKQKLKM 174 (333)
Q Consensus 150 ~~AY~s-GkPimsDeeFD~LK~kLk~ 174 (333)
-.+||. |+|+|||+|||+|..+|+.
T Consensus 19 ~~~YY~~d~p~IsD~eYD~L~~eL~~ 44 (318)
T 3jsl_A 19 SYEYYVEDNPSVPDSEYDKLLHELIK 44 (318)
T ss_dssp HHHHHTSCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 346775 9999999999999998864
No 3
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=92.21 E-value=0.026 Score=53.33 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=3.8
Q ss_pred HHhhh-cCCCccChHHHHHHHHHHhh
Q 019981 150 SMAYV-AGKPIMSDEEYDKLKQKLKM 174 (333)
Q Consensus 150 ~~AY~-sGkPimsDeeFD~LK~kLk~ 174 (333)
-.+|| .|+|+|||+|||.|..+|+.
T Consensus 16 ~~~YY~~~~p~IsD~eYD~L~~eL~~ 41 (305)
T 4glw_A 16 ATEYYTSDNPSVSDSEYDRLYRELVE 41 (305)
T ss_dssp ---------------------CHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 35777 59999999999999998864
No 4
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=91.50 E-value=0.13 Score=49.29 Aligned_cols=24 Identities=38% Similarity=0.736 Sum_probs=21.2
Q ss_pred Hhhh-cCCCccChHHHHHHHHHHhh
Q 019981 151 MAYV-AGKPIMSDEEYDKLKQKLKM 174 (333)
Q Consensus 151 ~AY~-sGkPimsDeeFD~LK~kLk~ 174 (333)
.+|| .|+|+|||+|||+|..+|+.
T Consensus 29 ~~YY~~d~p~IsD~eYD~L~~eL~~ 53 (328)
T 1zau_A 29 FRYYVRDAPIISDAEFDELLRRLEA 53 (328)
T ss_dssp HHHTTTCCCSSCTHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 4677 69999999999999999975
No 5
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=91.40 E-value=0.14 Score=49.17 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.2
Q ss_pred Hhhh-cCCCccChHHHHHHHHHHhh
Q 019981 151 MAYV-AGKPIMSDEEYDKLKQKLKM 174 (333)
Q Consensus 151 ~AY~-sGkPimsDeeFD~LK~kLk~ 174 (333)
.+|| .|+|+|||+|||+|..+|+.
T Consensus 27 ~~YY~~d~p~IsD~eYD~L~~eL~~ 51 (332)
T 1ta8_A 27 HEYYVKDQPSVEDYVYDRLYKELVD 51 (332)
T ss_dssp HHHHTSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 4676 69999999999999999874
No 6
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=91.29 E-value=0.14 Score=48.99 Aligned_cols=24 Identities=38% Similarity=0.654 Sum_probs=21.1
Q ss_pred Hhhh-cCCCccChHHHHHHHHHHhh
Q 019981 151 MAYV-AGKPIMSDEEYDKLKQKLKM 174 (333)
Q Consensus 151 ~AY~-sGkPimsDeeFD~LK~kLk~ 174 (333)
.+|| .|+|+|||+|||+|..+|+.
T Consensus 22 ~~YY~~d~p~IsD~eYD~L~~eL~~ 46 (318)
T 1b04_A 22 YEYYVLDRPSVPDAEYDRLMQELIA 46 (318)
T ss_dssp HHHHTTCSCCSSCHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 4676 69999999999999999874
No 7
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=91.14 E-value=0.091 Score=49.34 Aligned_cols=51 Identities=24% Similarity=0.520 Sum_probs=37.4
Q ss_pred HHHHHHhhhhcceeeeecCCCCCccccceeccccccccCCCCccceeCCCCccccccCceeEEeccc
Q 019981 256 LSQSLTKLIVRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTTMVYDSNT 322 (333)
Q Consensus 256 ~a~~Lt~l~~~D~~iLKG~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~L~f~tk~ 322 (333)
.|..||..|+ +=.+.|||||....+=| +.|+......|++ |....|.-++.
T Consensus 22 ~aRVLTE~Wv----~~n~yCPnCG~~~l~~f------~nN~PVaDF~C~~------C~EeyELKSk~ 72 (257)
T 4esj_A 22 KARILTEDWV----YRQSYCPNCGNNPLNHF------ENNRPVADFYCNH------CSEEFELKSKK 72 (257)
T ss_dssp HHHHHHHHHH----HHHCCCTTTCCSSCEEC----------CCCEEECTT------TCCEEEEEEEE
T ss_pred eehhhhHHHH----HHCCcCCCCCChhhhhc------cCCCcccccccCC------cchhheecccc
Confidence 4566676664 44678999999877666 5699999999999 99999988774
No 8
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=90.32 E-value=0.15 Score=52.26 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=21.5
Q ss_pred HHhhh-cCCCccChHHHHHHHHHHhh
Q 019981 150 SMAYV-AGKPIMSDEEYDKLKQKLKM 174 (333)
Q Consensus 150 ~~AY~-sGkPimsDeeFD~LK~kLk~ 174 (333)
-.+|| .|+|+|||+|||+|..+|+.
T Consensus 19 ~~~Yy~~~~p~IsD~eYD~L~~eL~~ 44 (586)
T 4glx_A 19 EYLYHVMDAPEIPDAEYDRLMRELRE 44 (586)
T ss_dssp HHHHHHTTCSSBCCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 35677 59999999999999999874
No 9
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=87.48 E-value=0.096 Score=49.46 Aligned_cols=36 Identities=25% Similarity=0.425 Sum_probs=4.0
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhh
Q 019981 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (333)
Q Consensus 95 lge~E~~fl~Al~~fY~~gk~~~sdeefd~LkEeL~ 130 (333)
+.++...--.+=.+||..+.|++||+|||.|.+||.
T Consensus 5 i~~L~~~i~~~~~~YY~~~~p~IsD~eYD~L~~eL~ 40 (305)
T 4glw_A 5 MNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELV 40 (305)
T ss_dssp HHC-----------------------------CHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 334444444556789999999999999999998864
No 10
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=86.44 E-value=0.58 Score=36.07 Aligned_cols=39 Identities=28% Similarity=0.637 Sum_probs=31.4
Q ss_pred eecCCCCCccccceeccccccccCCCCccceeCCCCccccccCceeEEecccee
Q 019981 271 LKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTTMVYDSNTRL 324 (333)
Q Consensus 271 LKG~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~L~f~tk~R~ 324 (333)
|+--||.|+++...| ..++..|+|.+ |++.|.--+..++
T Consensus 6 m~VKCp~C~niq~VF---------ShA~tvV~C~~------Cg~~L~~PTGGKA 44 (66)
T 1qxf_A 6 VKVKCPDCEHEQVIF---------DHPSTIVKCII------CGRTVAEPTGGKG 44 (66)
T ss_dssp EEEECTTTCCEEEEE---------SSCSSCEECSS------SCCEEEECCSSSC
T ss_pred EEEECCCCCCceEEE---------ecCceEEEccc------CCCEEeecCCcce
Confidence 677799999999888 55777899988 9999987665443
No 11
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=85.97 E-value=0.76 Score=35.08 Aligned_cols=42 Identities=29% Similarity=0.638 Sum_probs=32.6
Q ss_pred eeeeecCCCCCccccceeccccccccCCCCccceeCCCCccccccCceeEEecccee
Q 019981 268 SLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTTMVYDSNTRL 324 (333)
Q Consensus 268 ~~iLKG~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~L~f~tk~R~ 324 (333)
---++--||.|+++...| ..++..|+|.+ |++.|.--+..+.
T Consensus 11 S~Fm~VkCp~C~~~q~VF---------Sha~t~V~C~~------Cgt~L~~PTGGKa 52 (63)
T 3j20_W 11 SRFLRVKCIDCGNEQIVF---------SHPATKVRCLI------CGATLVEPTGGKG 52 (63)
T ss_dssp CCEEEEECSSSCCEEEEE---------SSCSSCEECSS------SCCEEEECCSSSC
T ss_pred CcEEEEECCCCCCeeEEE---------ecCCeEEEccC------cCCEEecCCCCcE
Confidence 345677899999999887 45777899988 9999987665443
No 12
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=85.72 E-value=0.65 Score=44.48 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhh
Q 019981 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEEL 129 (333)
Q Consensus 95 lge~E~~fl~Al~~fY~~gk~~~sdeefd~LkEeL 129 (333)
+.++...--.+=.+||..+.|++||+|||.|..||
T Consensus 6 i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL 40 (322)
T 3uq8_A 6 LDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQL 40 (322)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 34455555566678999999999999999998875
No 13
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=85.28 E-value=0.67 Score=44.44 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=29.9
Q ss_pred chhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhh
Q 019981 94 SLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (333)
Q Consensus 94 slge~E~~fl~Al~~fY~~gk~~~sdeefd~LkEeL~ 130 (333)
-+.++...--.+=.+||..+.|++||+|||.|..+|.
T Consensus 16 ~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~ 52 (328)
T 1zau_A 16 QWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLE 52 (328)
T ss_dssp THHHHHHHHHHHHHHHTTTCCCSSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 4566666666666789999999999999999999864
No 14
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=85.26 E-value=0.67 Score=44.26 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhh
Q 019981 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (333)
Q Consensus 95 lge~E~~fl~Al~~fY~~gk~~~sdeefd~LkEeL~ 130 (333)
+.++...--.+=.+||..+.|++||+|||.|..+|.
T Consensus 10 ~~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~ 45 (318)
T 1b04_A 10 AAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELI 45 (318)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 445555555556678999999999999999999864
No 15
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=85.17 E-value=0.73 Score=44.11 Aligned_cols=35 Identities=29% Similarity=0.459 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhh
Q 019981 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEEL 129 (333)
Q Consensus 95 lge~E~~fl~Al~~fY~~gk~~~sdeefd~LkEeL 129 (333)
+.++...--++=.+||..+.|++||+|||.|..||
T Consensus 8 i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL 42 (318)
T 3jsl_A 8 VNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHEL 42 (318)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 44555555556667888999999999999998875
No 16
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=85.16 E-value=0.52 Score=49.12 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=21.4
Q ss_pred HHhhh-cCCCccChHHHHHHHHHHhh
Q 019981 150 SMAYV-AGKPIMSDEEYDKLKQKLKM 174 (333)
Q Consensus 150 ~~AY~-sGkPimsDeeFD~LK~kLk~ 174 (333)
-.+|| .++|+|||+|||+|.++|+.
T Consensus 19 ~~~YY~~d~p~isD~eYD~L~~eL~~ 44 (671)
T 2owo_A 19 EYLYHVMDAPEIPDAEYDRLMRELRE 44 (671)
T ss_dssp HHHHHHTTCSSBCCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 34666 68999999999999999875
No 17
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=84.89 E-value=0.75 Score=44.23 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=28.8
Q ss_pred chhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhh
Q 019981 94 SLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (333)
Q Consensus 94 slge~E~~fl~Al~~fY~~gk~~~sdeefd~LkEeL~ 130 (333)
-+.++...--.+=.+||..+.|++||+|||.|..+|.
T Consensus 14 ~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~ 50 (332)
T 1ta8_A 14 RAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELV 50 (332)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 3455555555556678999999999999999999864
No 18
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=84.74 E-value=0.63 Score=47.74 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhh
Q 019981 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (333)
Q Consensus 95 lge~E~~fl~Al~~fY~~gk~~~sdeefd~LkEeL~ 130 (333)
+.++...--.+=.+||..+.|++||+|||.|.+||.
T Consensus 8 i~~L~~~i~~~~~~Yy~~~~p~IsD~eYD~L~~eL~ 43 (586)
T 4glx_A 8 LTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELR 43 (586)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSBCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 445555555666789999999999999999998874
No 19
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=83.77 E-value=0.47 Score=49.41 Aligned_cols=26 Identities=38% Similarity=0.599 Sum_probs=22.1
Q ss_pred HHhhh-cCCCccChHHHHHHHHHHhhc
Q 019981 150 SMAYV-AGKPIMSDEEYDKLKQKLKME 175 (333)
Q Consensus 150 ~~AY~-sGkPimsDeeFD~LK~kLk~~ 175 (333)
-.+|| .++|+|||+|||+|.++|+.-
T Consensus 21 ~~~YY~~d~p~isD~eYD~l~~eL~~l 47 (667)
T 1dgs_A 21 NYRYYVLADPEISDAEYDRLLRELKEL 47 (667)
T ss_dssp HHHHHTTCCCCSCSSSSHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 34677 699999999999999999853
No 20
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=80.18 E-value=2 Score=34.16 Aligned_cols=44 Identities=16% Similarity=0.458 Sum_probs=34.7
Q ss_pred eeeecCCCCCccccceeccccccccCCCCccceeCCCCccccccCceeEEeccceeeec
Q 019981 269 LILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTTMVYDSNTRLITL 327 (333)
Q Consensus 269 ~iLKG~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~L~f~tk~R~itl 327 (333)
--|+--||.|+++...| ..++..|.|.+ |++.|.--+..++...
T Consensus 29 ~Fm~VkCp~C~n~q~VF---------ShA~t~V~C~~------Cg~~L~~PTGGKA~l~ 72 (81)
T 2xzm_6 29 YFMDVKCAQCQNIQMIF---------SNAQSTIICEK------CSAILCKPTGGKVQIQ 72 (81)
T ss_dssp CEEEEECSSSCCEEEEE---------TTCSSCEECSS------SCCEEEEECSSCEEEC
T ss_pred cEEEeECCCCCCeeEEE---------ecCccEEEccC------CCCEEeecCCCCeEec
Confidence 44777899999998888 46777899988 9999988776555443
No 21
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=79.18 E-value=0.27 Score=50.82 Aligned_cols=25 Identities=36% Similarity=0.709 Sum_probs=21.4
Q ss_pred HHhhh-cCCCccChHHHHHHHHHHhh
Q 019981 150 SMAYV-AGKPIMSDEEYDKLKQKLKM 174 (333)
Q Consensus 150 ~~AY~-sGkPimsDeeFD~LK~kLk~ 174 (333)
-.+|| .++|+|||+|||+|.++|+.
T Consensus 28 ~~~YY~~d~p~IsD~eYD~L~~eL~~ 53 (615)
T 3sgi_A 28 QFRYYVRDAPIISDAEFDELLRRLEA 53 (615)
T ss_dssp HHHHHHHSCCCSSCCSSCSSSSHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 35777 79999999999999888864
No 22
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=78.75 E-value=1.2 Score=31.95 Aligned_cols=38 Identities=26% Similarity=0.632 Sum_probs=23.6
Q ss_pred ecCCCCCccccceeccccccccCCCCccceeCCCCccccccCce
Q 019981 272 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTT 315 (333)
Q Consensus 272 KG~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~ 315 (333)
.-+||.||...-.||---........+.-++|.+ ||..
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~------Cg~~ 52 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTK------CGHT 52 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESS------SCCE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCC------CCCE
Confidence 5789999997777763211112223345578877 8865
No 23
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=77.82 E-value=1.5 Score=45.64 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhh
Q 019981 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (333)
Q Consensus 95 lge~E~~fl~Al~~fY~~gk~~~sdeefd~LkEeL~ 130 (333)
+.++...--.+=.+||..+.|++||+|||.|..||.
T Consensus 8 ~~~L~~~l~~~~~~YY~~d~p~isD~eYD~L~~eL~ 43 (671)
T 2owo_A 8 LTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELR 43 (671)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSBCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 445555555566789999999999999999999874
No 24
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=77.65 E-value=0.99 Score=31.36 Aligned_cols=28 Identities=25% Similarity=0.805 Sum_probs=19.7
Q ss_pred CCCCCccccceeccccccccCCCCccceeCCCCccccccCcee
Q 019981 274 PCPNCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTTM 316 (333)
Q Consensus 274 ~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~L 316 (333)
.||+||.+...| ......+.|.. ||..+
T Consensus 7 ~CP~C~~~~l~~---------d~~~gelvC~~------CG~v~ 34 (50)
T 1pft_A 7 VCPACESAELIY---------DPERGEIVCAK------CGYVI 34 (50)
T ss_dssp SCTTTSCCCEEE---------ETTTTEEEESS------SCCBC
T ss_pred eCcCCCCcceEE---------cCCCCeEECcc------cCCcc
Confidence 599999865544 22456789988 88755
No 25
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=77.45 E-value=1.9 Score=34.49 Aligned_cols=44 Identities=20% Similarity=0.502 Sum_probs=33.4
Q ss_pred ceeeeecCCCCCccccceeccccccccCCCCccceeCCCCccccccCceeEEeccceee
Q 019981 267 ESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTTMVYDSNTRLI 325 (333)
Q Consensus 267 D~~iLKG~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~L~f~tk~R~i 325 (333)
|---++--||.|+++...| ..++..|.|.+ |++.|.--+..++.
T Consensus 29 nS~Fm~VkCp~C~~~q~VF---------Sha~t~V~C~~------Cg~~L~~PTGGKa~ 72 (82)
T 3u5c_b 29 RSYFLDVKCPGCLNITTVF---------SHAQTAVTCES------CSTILCTPTGGKAK 72 (82)
T ss_dssp CCCEEEEECTTSCSCEEEE---------SBCSSCCCCSS------SCCCCEECCSSBCE
T ss_pred CCcEEEEECCCCCCeeEEE---------ecCCeEEEccc------cCCEEeccCCCCeE
Confidence 4455777899999999888 45667788887 99999876654443
No 26
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=77.19 E-value=1 Score=29.68 Aligned_cols=12 Identities=25% Similarity=0.578 Sum_probs=10.3
Q ss_pred CCCCCcccccee
Q 019981 274 PCPNCGTENVSF 285 (333)
Q Consensus 274 ~CPNCGeEv~aF 285 (333)
.||+||.-||+.
T Consensus 8 ~C~~C~~~Nfa~ 19 (33)
T 2k1p_A 8 QCKTCSNVNWAR 19 (33)
T ss_dssp BCSSSCCBCCTT
T ss_pred ccCCCCCccccc
Confidence 499999998876
No 27
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=76.37 E-value=1.1 Score=39.66 Aligned_cols=34 Identities=26% Similarity=0.606 Sum_probs=21.4
Q ss_pred eeeecCCCCCcc-ccceeccccccccCCCCccceeCCCCccccccCceeEE
Q 019981 269 LILKGPCPNCGT-ENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTTMVY 318 (333)
Q Consensus 269 ~iLKG~CPNCGe-Ev~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~L~f 318 (333)
..-+++||+||- .-+.||.+ + ..+|++ ||..-.+
T Consensus 11 ~~~~~~CP~Cg~~d~~~~~~d-----g-----~~~C~~------Cg~~~~~ 45 (255)
T 1nui_A 11 FLYHIPCDNCGSSDGNSLFSD-----G-----HTFCYV------CEKWTAG 45 (255)
T ss_dssp EEEEECCSSSCCSSCEEEETT-----S-----CEEETT------TCCEEC-
T ss_pred eecCCcCCCCCCCCCceEeCC-----C-----Ceeccc------CCCcCCC
Confidence 345899999997 44555521 1 267766 9876443
No 28
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=74.30 E-value=1.2 Score=29.15 Aligned_cols=12 Identities=25% Similarity=0.517 Sum_probs=9.9
Q ss_pred CCCCCcccccee
Q 019981 274 PCPNCGTENVSF 285 (333)
Q Consensus 274 ~CPNCGeEv~aF 285 (333)
.||+||.-||+.
T Consensus 7 ~C~~C~~~Nfa~ 18 (32)
T 2lk0_A 7 LCNKCCLNNFRK 18 (32)
T ss_dssp ECTTTCCEEETT
T ss_pred CcCcCcCCcChh
Confidence 499999988875
No 29
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=74.19 E-value=1.6 Score=45.45 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhh
Q 019981 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (333)
Q Consensus 95 lge~E~~fl~Al~~fY~~gk~~~sdeefd~LkEeL~ 130 (333)
+.++...--++=.+||..+.|++||+|||.|..||.
T Consensus 10 ~~~L~~~l~~~~~~YY~~d~p~isD~eYD~l~~eL~ 45 (667)
T 1dgs_A 10 INELRDLIRYHNYRYYVLADPEISDAEYDRLLRELK 45 (667)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSCSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 444555555556689999999999999999999875
No 30
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=73.40 E-value=1.7 Score=35.05 Aligned_cols=42 Identities=17% Similarity=0.468 Sum_probs=30.9
Q ss_pred ceeeeecCCCCCccccceeccccccccCCCCccceeCCCCccccccCceeEEeccce
Q 019981 267 ESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTTMVYDSNTR 323 (333)
Q Consensus 267 D~~iLKG~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~L~f~tk~R 323 (333)
|---++--||.|+++...| ..++..|.|.+ |++.|.--+..+
T Consensus 31 nS~Fm~VkCp~C~~~~~VF---------ShA~t~V~C~~------CgtvL~~PTGGK 72 (86)
T 3iz6_X 31 NSFFMDVKCQGCFNITTVF---------SHSQTVVVCPG------CQTVLCQPTGGK 72 (86)
T ss_dssp --CEEEEECTTTCCEEEEE---------TTCSSCCCCSS------SCCCCSCCCSSS
T ss_pred CCcEeEEECCCCCCeeEEE---------ecCCcEEEccC------CCCEeecCCCCC
Confidence 4456777899999999888 45677788887 999886555433
No 31
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=69.73 E-value=2.7 Score=30.71 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=20.8
Q ss_pred CCCCCccccceeccccccccCCCCccceeCCCCccccccCceeE
Q 019981 274 PCPNCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTTMV 317 (333)
Q Consensus 274 ~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~L~ 317 (333)
.||+||.+...| ......+.|.+ ||..++
T Consensus 13 ~Cp~C~~~~lv~---------D~~~ge~vC~~------CGlVl~ 41 (58)
T 1dl6_A 13 TCPNHPDAILVE---------DYRAGDMICPE------CGLVVG 41 (58)
T ss_dssp SBTTBSSSCCEE---------CSSSCCEECTT------TCCEEC
T ss_pred cCcCCCCCceeE---------eCCCCeEEeCC------CCCEEe
Confidence 599999866444 23556788988 987764
No 32
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=69.32 E-value=1.3 Score=35.12 Aligned_cols=42 Identities=14% Similarity=0.358 Sum_probs=21.3
Q ss_pred CCCCCccccceeccccccccCCCCccceeC-CCCccccccCcee
Q 019981 274 PCPNCGTENVSFFGTILSISSGGTTNTINC-SNLTFCFSCGTTM 316 (333)
Q Consensus 274 ~CPNCGeEv~aFfgtilsv~s~~~~n~vkC-~~~aeCHVC~t~L 316 (333)
-||.||.++...-....++.-.+..-.++= + -..|..||..+
T Consensus 4 ~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~-~~~C~~CGE~~ 46 (133)
T 3o9x_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIH-GLYCVHCEESI 46 (133)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEE-EEEESSSSCEE
T ss_pred CCCcCCCCceeeceEEEEEEECCEEEEECCCc-eeECCCCCCEe
Confidence 499999875433222222222333333332 1 24566699875
No 33
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=68.98 E-value=2.6 Score=30.18 Aligned_cols=32 Identities=25% Similarity=0.564 Sum_probs=21.8
Q ss_pred eeeeecCCCCCccccceeccccccccCCCCccceeCCCCccccccCce
Q 019981 268 SLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTT 315 (333)
Q Consensus 268 ~~iLKG~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~ 315 (333)
..-+.--||+||..++-. . ...+..|+. ||-+
T Consensus 15 v~~~~k~CP~CG~~~fm~--~--------~~~R~~C~k------CG~t 46 (50)
T 3j20_Y 15 VIRKNKFCPRCGPGVFMA--D--------HGDRWACGK------CGYT 46 (50)
T ss_dssp EECSSEECSSSCSSCEEE--E--------CSSEEECSS------SCCE
T ss_pred EEEecccCCCCCCceEEe--c--------CCCeEECCC------CCCE
Confidence 345677899999988633 1 125778887 8753
No 34
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=68.84 E-value=1.5 Score=39.62 Aligned_cols=52 Identities=23% Similarity=0.536 Sum_probs=32.2
Q ss_pred HHHHHhh-hhcceeeeecCCCCCccccceeccccccccCC-CCccceeCCCCccccccCcee
Q 019981 257 SQSLTKL-IVRESLILKGPCPNCGTENVSFFGTILSISSG-GTTNTINCSNLTFCFSCGTTM 316 (333)
Q Consensus 257 a~~Lt~l-~~~D~~iLKG~CPNCGeEv~aFfgtilsv~s~-~~~n~vkC~~~aeCHVC~t~L 316 (333)
...|+.- -++|..-|+=.||.||+++- |+++...... -..+.+.|++ |+..+
T Consensus 6 esqi~DeeRfr~c~~l~l~Cp~C~~~~~--F~gv~~~~~~~~~~sg~~C~~------C~~~~ 59 (206)
T 3flo_B 6 ETTITDVERFKDTVTLELSCPSCDKRFP--FGGIVSSNYYRVSYNGLQCKH------CEQLF 59 (206)
T ss_dssp -----CTTTTTTCCCEEEECTTTCCEEE--ECSSSCCSSEEEETTEEEETT------TCCBC
T ss_pred cccCCHHHHhCcCceeEEECCCCCCccC--CCCcccCCCcccccccccCCC------CCCcC
Confidence 3445554 68899999999999999864 5555432111 2456677877 88754
No 35
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=68.52 E-value=1.6 Score=45.24 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhh
Q 019981 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (333)
Q Consensus 95 lge~E~~fl~Al~~fY~~gk~~~sdeefd~LkEeL~ 130 (333)
+.++.+.--.+=.+||..+.|++||+|||.|..||.
T Consensus 17 i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~ 52 (615)
T 3sgi_A 17 WQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLE 52 (615)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCSSCCSSCSSSSHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 445555555555788989999999999999977763
No 36
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=68.47 E-value=2.1 Score=32.83 Aligned_cols=41 Identities=24% Similarity=0.629 Sum_probs=27.6
Q ss_pred eeecCCCCCccccceeccccccccCCCCccceeCCCCccccccCceeEEe-ccceeeec
Q 019981 270 ILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTTMVYD-SNTRLITL 327 (333)
Q Consensus 270 iLKG~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~L~f~-tk~R~itl 327 (333)
-+.=.|++||.++--= ....++|++ ||..+.|- ++.|.+..
T Consensus 26 ~v~Y~C~~CG~~~e~~-----------~~d~irCp~------CG~RILyK~R~~r~v~~ 67 (70)
T 1twf_L 26 TLKYICAECSSKLSLS-----------RTDAVRCKD------CGHRILLKARTKRLVQF 67 (70)
T ss_dssp CCCEECSSSCCEECCC-----------TTSTTCCSS------SCCCCCBCCCCSSCEEE
T ss_pred eEEEECCCCCCcceeC-----------CCCCccCCC------CCceEeEecCCCccEEE
Confidence 3445799999996422 223568998 99977776 55566543
No 37
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=59.74 E-value=4.7 Score=30.54 Aligned_cols=40 Identities=25% Similarity=0.704 Sum_probs=28.6
Q ss_pred eeecCCCCCccccceeccccccccCCCCccceeCCCCccccccCceeEEe-ccceeee
Q 019981 270 ILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTTMVYD-SNTRLIT 326 (333)
Q Consensus 270 iLKG~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~L~f~-tk~R~it 326 (333)
-++=-|..||.+|--= ....++|++ ||..+.|- ++.|.+.
T Consensus 19 ~v~Y~C~~Cg~~~~l~-----------~~~~iRC~~------CG~RILyK~Rt~r~~~ 59 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQ-----------AKEVIRCRE------CGHRVMYKMRTKRMVQ 59 (63)
T ss_dssp CCCCBCSSSCCBCCCC-----------SSSCCCCSS------SCCCCCBCCCCCCCEE
T ss_pred CeEEECCCCCCeeecC-----------CCCceECCC------CCcEEEEEecCCceEE
Confidence 3566799999998621 224689999 99999887 4445443
No 38
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=54.28 E-value=5.9 Score=27.79 Aligned_cols=22 Identities=41% Similarity=0.877 Sum_probs=17.2
Q ss_pred CCC--CCccccceeccccccccCCCCccceeCCCCccccccCce
Q 019981 274 PCP--NCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTT 315 (333)
Q Consensus 274 ~CP--NCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~ 315 (333)
.|| .||.-||+. |..|+.|+++
T Consensus 16 ~C~~~~C~~~Nfa~--------------------R~~C~~C~~p 39 (45)
T 1n0z_A 16 ICPDKKCGNVNFAR--------------------RTSCDRCGRE 39 (45)
T ss_dssp BCSSTTTCCBCCSS--------------------CSBCSSSCCB
T ss_pred CCCCCCCCCEEccc--------------------cccccccCCc
Confidence 588 799999887 4567779876
No 39
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=53.31 E-value=8.1 Score=28.08 Aligned_cols=31 Identities=26% Similarity=0.643 Sum_probs=21.4
Q ss_pred eeecCCCCCccccceeccccccccCCCCccceeCCCCccccccCcee
Q 019981 270 ILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTTM 316 (333)
Q Consensus 270 iLKG~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~L 316 (333)
-+.--||.||..++ +.. ..+++.|.. |+-..
T Consensus 16 ~~~~fCPkCG~~~~--ma~--------~~dr~~C~k------Cgyt~ 46 (55)
T 2k4x_A 16 RKHRFCPRCGPGVF--LAE--------HADRYSCGR------CGYTE 46 (55)
T ss_dssp CSSCCCTTTTTTCC--CEE--------CSSEEECTT------TCCCE
T ss_pred EccccCcCCCCcee--Eec--------cCCEEECCC------CCCEE
Confidence 35678999999773 321 124888988 98874
No 40
>3gzf_A Replicase polyprotein 1AB; FCOV, NSP4, viral protein; 2.76A {Feline coronavirus}
Probab=51.94 E-value=38 Score=27.72 Aligned_cols=66 Identities=17% Similarity=0.317 Sum_probs=49.8
Q ss_pred CccccChHHHhhhHhhhhhcCCeeEEeChh-hHHHHHHH--HhhhcCCCccChHHHHHH--------HHHHhhcCCceee
Q 019981 113 GKAVMSNEEFDNLKEELMWEGSSVVMLSSA-EQKFLEAS--MAYVAGKPIMSDEEYDKL--------KQKLKMEGSEIVV 181 (333)
Q Consensus 113 gk~~~sdeefd~LkEeL~weGSsvv~L~~~-Eq~fLEA~--~AY~sGkPimsDeeFD~L--------K~kLk~~GS~VVv 181 (333)
+.+++.++.|..|+.+ ++.+ =+++|..- ..||+|. |++.+|+.- =..-+..|.+|.-
T Consensus 18 ~TFvId~~~Y~kL~n~----------is~~~~~~Yla~yNKYKYySGs--~~~adYr~Ac~AhLakAl~~fs~~g~d~LY 85 (96)
T 3gzf_A 18 GTFVIDMRSYETLVNS----------TSLDRIKSYANSFNKYKYYTGS--MGEADYRMACYAHLGKALMDYSVSRNDKLY 85 (96)
T ss_dssp SCEEECHHHHHHHHTT----------TTHHHHHHHHHTHHHHHSCCSC--CCHHHHHHHHHHHHHHHHHHHHHSCCCEEE
T ss_pred ceEEEccHHHHHHHhh----------cCHHHHHHHHHHHhhhccccCC--cchHHHHHHHHHHHHHHHHHHhccCCceee
Confidence 5678999999999987 4433 36677653 4599996 899999753 1344667889999
Q ss_pred ecCeeeecC
Q 019981 182 EGPRCSLRS 190 (333)
Q Consensus 182 k~PrCslr~ 190 (333)
.-|+||+-+
T Consensus 86 tPP~~Sv~S 94 (96)
T 3gzf_A 86 TPPTVSVNS 94 (96)
T ss_dssp CCCEEEEEC
T ss_pred CCCcccccC
Confidence 999999865
No 41
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=51.87 E-value=6 Score=31.11 Aligned_cols=30 Identities=30% Similarity=0.680 Sum_probs=20.9
Q ss_pred ecCCCCCccccceeccccccccCCCCccceeCCCCccccccCceeE
Q 019981 272 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTTMV 317 (333)
Q Consensus 272 KG~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~L~ 317 (333)
+=.||+||.+ ..|.. ++...+|+. |+....
T Consensus 27 ~y~Cp~CG~~--~v~r~--------atGiW~C~~------Cg~~~a 56 (83)
T 1vq8_Z 27 DHACPNCGED--RVDRQ--------GTGIWQCSY------CDYKFT 56 (83)
T ss_dssp CEECSSSCCE--EEEEE--------ETTEEEETT------TCCEEE
T ss_pred cCcCCCCCCc--ceecc--------CCCeEECCC------CCCEec
Confidence 5689999984 34433 345788988 998643
No 42
>3vc8_A RNA-directed RNA polymerase; NEW fold, HOST membrane, multi-PASS membrane protein, cytopl hydrolase, viral protein; 2.00A {Murine hepatitis virus} PDB: 3vcb_A
Probab=51.50 E-value=35 Score=27.86 Aligned_cols=67 Identities=22% Similarity=0.448 Sum_probs=46.9
Q ss_pred cCccccChHHHhhhHhhhhhcCCeeEEeCh-hhHHHHHHH--HhhhcCCCccChHHHHHH------HH--HHh-hcCCce
Q 019981 112 EGKAVMSNEEFDNLKEELMWEGSSVVMLSS-AEQKFLEAS--MAYVAGKPIMSDEEYDKL------KQ--KLK-MEGSEI 179 (333)
Q Consensus 112 ~gk~~~sdeefd~LkEeL~weGSsvv~L~~-~Eq~fLEA~--~AY~sGkPimsDeeFD~L------K~--kLk-~~GS~V 179 (333)
.+.++++++.|..|+.+ ++. +=+++|..- ..||+|. |++.+|+.- |. .-+ ..|.+|
T Consensus 12 ~~TFvId~~~Y~kL~ns----------is~~~~~~Yla~yNKYKYySGs--~~~adYr~Ac~ahLAkAl~~fs~~~g~dv 79 (94)
T 3vc8_A 12 LTTFMITKESYCKLKNS----------VSDVAFNRYLSLYNKYRYFSGK--MDTAAYREAACSQLAKAMETFNHNNGNDV 79 (94)
T ss_dssp TSCEEECHHHHHHHHHH----------SCHHHHHHHHHTHHHHHTCCSC--CCHHHHHHHHHHHHHHHHHHHHHHCSCCE
T ss_pred hceEEeccHHHHHHHhh----------cCHHHHHHHHHHHHhhccccCC--cchHHHHHHHHHHHHHHHHHhhhcCCCce
Confidence 36779999999999998 333 336677653 4599996 899999853 22 334 668899
Q ss_pred eeecCeeeecC
Q 019981 180 VVEGPRCSLRS 190 (333)
Q Consensus 180 Vvk~PrCslr~ 190 (333)
.-.-|+||+-+
T Consensus 80 LYtPP~~Sv~s 90 (94)
T 3vc8_A 80 LYQPPTASVTT 90 (94)
T ss_dssp EECCSCC----
T ss_pred eeCCCcceeeh
Confidence 99999999865
No 43
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=49.12 E-value=5.6 Score=29.90 Aligned_cols=13 Identities=54% Similarity=1.198 Sum_probs=7.8
Q ss_pred eecCCCCCccccc
Q 019981 271 LKGPCPNCGTENV 283 (333)
Q Consensus 271 LKG~CPNCGeEv~ 283 (333)
||.-||+||++..
T Consensus 17 Lk~~CP~CG~~T~ 29 (60)
T 2apo_B 17 LKEICPKCGEKTV 29 (60)
T ss_dssp SSSBCSSSCSBCB
T ss_pred ccccCcCCCCcCC
Confidence 4566666666654
No 44
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=44.42 E-value=10 Score=29.54 Aligned_cols=31 Identities=19% Similarity=0.549 Sum_probs=21.0
Q ss_pred ecCCCCCccccceeccccccccCCCCccceeCCCCccccccCcee
Q 019981 272 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTTM 316 (333)
Q Consensus 272 KG~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~L 316 (333)
.-.||+||..|.. +..+..+...|.. |+..+
T Consensus 5 ~~~c~~c~~~n~~--------p~~~~~~~~~~~~------~~~~~ 35 (148)
T 3p2a_A 5 NTVCTACMATNRL--------PEERIDDGAKCGR------CGHSL 35 (148)
T ss_dssp EEECTTTCCEEEE--------ESSCSCSCCBCTT------TCCBT
T ss_pred EEECcccccccCC--------CCcccccCCcchh------cCCcc
Confidence 4459999998743 3445555666766 88865
No 45
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=44.29 E-value=7.4 Score=29.29 Aligned_cols=13 Identities=46% Similarity=1.060 Sum_probs=7.4
Q ss_pred eecCCCCCccccc
Q 019981 271 LKGPCPNCGTENV 283 (333)
Q Consensus 271 LKG~CPNCGeEv~ 283 (333)
||..||+||++..
T Consensus 16 Lk~~CP~CG~~t~ 28 (60)
T 2aus_D 16 LKETCPVCGEKTK 28 (60)
T ss_dssp SSSBCTTTCSBCE
T ss_pred ccccCcCCCCccC
Confidence 4555666666554
No 46
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=44.21 E-value=13 Score=31.52 Aligned_cols=36 Identities=19% Similarity=0.529 Sum_probs=26.3
Q ss_pred eeeeecCCCC--Cccccc-eeccccccccCCCCccceeCCCCccccccCceeEEec
Q 019981 268 SLILKGPCPN--CGTENV-SFFGTILSISSGGTTNTINCSNLTFCFSCGTTMVYDS 320 (333)
Q Consensus 268 ~~iLKG~CPN--CGeEv~-aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~L~f~t 320 (333)
..-|.-.||+ ||..|| |.-. ++.-|.. |+-+..|++
T Consensus 114 ~~~~~~~c~~~~cg~g~fma~h~-----------~r~~cgk------c~~t~~~~~ 152 (152)
T 3u5c_f 114 VTKLRRECSNPTCGAGVFLANHK-----------DRLYCGK------CHSVYKVNA 152 (152)
T ss_dssp EECCSCBCCSTTSCSSSBEEECS-----------SCEEESS------SSSCCEECC
T ss_pred EEECcCcCCCccCCCceEecccC-----------CCcccCC------CceEEEecC
Confidence 4567889999 999887 3221 3667777 998888764
No 47
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=44.11 E-value=5.5 Score=31.24 Aligned_cols=12 Identities=58% Similarity=1.237 Sum_probs=10.1
Q ss_pred ecCCCCCccccc
Q 019981 272 KGPCPNCGTENV 283 (333)
Q Consensus 272 KG~CPNCGeEv~ 283 (333)
.|+||-||.++-
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 789999998764
No 48
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=43.09 E-value=7.4 Score=38.42 Aligned_cols=10 Identities=30% Similarity=0.743 Sum_probs=6.2
Q ss_pred eecCCCCCcc
Q 019981 271 LKGPCPNCGT 280 (333)
Q Consensus 271 LKG~CPNCGe 280 (333)
|...|||||+
T Consensus 11 ~~s~Cp~C~~ 20 (404)
T 2qkd_A 11 IESLCMNCYR 20 (404)
T ss_dssp CEEECTTTSS
T ss_pred ccccCCCCCC
Confidence 4455777774
No 49
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=42.51 E-value=13 Score=35.25 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=12.9
Q ss_pred HHHHhhhcCccccChHHHhh
Q 019981 105 ALQAFYYEGKAVMSNEEFDN 124 (333)
Q Consensus 105 Al~~fY~~gk~~~sdeefd~ 124 (333)
+|..+...|+|.|.-+.|..
T Consensus 76 ~l~~~~~~g~P~L~~~~~~~ 95 (309)
T 2fiy_A 76 RLRKSREHGMPPLAYDLLVR 95 (309)
T ss_dssp HHHHHHHTTCCTTCHHHHHH
T ss_pred HHHHHHhcCCCCCCccccCC
Confidence 34455667888888665554
No 50
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=41.89 E-value=14 Score=36.50 Aligned_cols=14 Identities=7% Similarity=0.029 Sum_probs=11.1
Q ss_pred HHHHHHHHhhhcCC
Q 019981 144 QKFLEASMAYVAGK 157 (333)
Q Consensus 144 q~fLEA~~AY~sGk 157 (333)
++|++.+.++.+|+
T Consensus 140 ~~~i~kL~~~~~g~ 153 (404)
T 2qkd_A 140 DEFIGKLKDLKQMA 153 (404)
T ss_dssp HHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHcCC
Confidence 37888888888887
No 51
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=39.95 E-value=11 Score=34.49 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=17.0
Q ss_pred cCCCCCccccceeccccccccCCCCccceeCCC
Q 019981 273 GPCPNCGTENVSFFGTILSISSGGTTNTINCSN 305 (333)
Q Consensus 273 G~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~ 305 (333)
-|||.||+++..-. -+++ ..+-|++
T Consensus 243 ~pC~~CG~~I~~~~------~~gR--~t~~CP~ 267 (271)
T 2xzf_A 243 EKCSRCGAEIQKIK------VAGR--GTHFCPV 267 (271)
T ss_dssp SBCTTTCCBCEEEE------ETTE--EEEECTT
T ss_pred CCCCCCCCEeeEEE------ECCC--ceEECCC
Confidence 37999999987443 2344 4568887
No 52
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=39.83 E-value=20 Score=28.38 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=23.9
Q ss_pred cCCCCCccccceeccccccccCCCCccceeCCCCccccccCceeEE
Q 019981 273 GPCPNCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTTMVY 318 (333)
Q Consensus 273 G~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~L~f 318 (333)
=.||.|+.|.-.=+.-+. ......+.|.+ |+...++
T Consensus 24 F~CPfCnh~~sV~vkidk----~~~~g~l~C~~------Cg~~~~~ 59 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDR----ARNTGVISCTV------CLEEFQT 59 (85)
T ss_dssp CCCTTTCCSSCEEEEEET----TTTEEEEEESS------SCCEEEE
T ss_pred EcCCCCCCCCeEEEEEEc----cCCEEEEEccc------CCCeEEe
Confidence 379999999754444332 33466778877 9875544
No 53
>3c1l_A Putative antioxidant defense protein MLR4105; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Mesorhizobium loti}
Probab=39.27 E-value=33 Score=28.58 Aligned_cols=75 Identities=11% Similarity=-0.011 Sum_probs=49.9
Q ss_pred cccchhHHHHHHHHHHHH---------hhhc-CccccChHHHhhhHhhhhhcCCeeEEeChhhHHHHHHHHhhhcCCCcc
Q 019981 91 EKKSLGELEQEFLQALQA---------FYYE-GKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIM 160 (333)
Q Consensus 91 ~k~slge~E~~fl~Al~~---------fY~~-gk~~~sdeefd~LkEeL~weGSsvv~L~~~Eq~fLEA~~AY~sGkPim 160 (333)
+.-+..++|++-+-+-+. .... .+.-+++|+-+.|.. .|.++ .+++.|+.-|+...+......-+
T Consensus 63 ~~L~~~~rEli~l~vs~~ngC~yC~~~H~~~a~~~G~~~~~i~~l~~--~~~~~---~~~~~e~a~l~~a~~lt~~~~~v 137 (188)
T 3c1l_A 63 SGLSKLDREMIAVAVSSINHCYYCLTAHGAAVRQLSGDPALGEMLVM--NFRAA---DLSPRQTAMLEFAVKLTEEPAKI 137 (188)
T ss_dssp CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSCHHHHHHHHH--CGGGG---CCCHHHHHHHHHHHHHHHCGGGC
T ss_pred CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHH--hhhcC---CCCHHHHHHHHHHHHHHhCcCCC
Confidence 445667777776665431 1112 223577888777765 48887 36899998888777755543359
Q ss_pred ChHHHHHHHH
Q 019981 161 SDEEYDKLKQ 170 (333)
Q Consensus 161 sDeeFD~LK~ 170 (333)
+|+.|+.|+.
T Consensus 138 ~d~~~~~l~~ 147 (188)
T 3c1l_A 138 VEADRAALRK 147 (188)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999999874
No 54
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=39.04 E-value=15 Score=33.76 Aligned_cols=25 Identities=32% Similarity=0.616 Sum_probs=17.2
Q ss_pred cCCCCCccccceeccccccccCCCCccceeCCC
Q 019981 273 GPCPNCGTENVSFFGTILSISSGGTTNTINCSN 305 (333)
Q Consensus 273 G~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~ 305 (333)
-|||.||+++..-. -++++ .+-|++
T Consensus 236 ~pC~~CG~~I~~~~------~~gR~--t~~CP~ 260 (266)
T 1ee8_A 236 LPCPACGRPVERRV------VAGRG--THFCPT 260 (266)
T ss_dssp SBCTTTCCBCEEEE------SSSCE--EEECTT
T ss_pred CCCCCCCCEeeEEE------ECCCc--eEECCC
Confidence 47999999987543 23444 568887
No 55
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=38.80 E-value=11 Score=34.66 Aligned_cols=32 Identities=31% Similarity=0.641 Sum_probs=19.4
Q ss_pred cceeeeec----CCCCCccccceeccccccccCCCCccceeCCC
Q 019981 266 RESLILKG----PCPNCGTENVSFFGTILSISSGGTTNTINCSN 305 (333)
Q Consensus 266 ~D~~iLKG----~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~ 305 (333)
++.+-++| |||.||+++..-. -++ -..+-|++
T Consensus 235 ~~~~~VygR~g~pC~~CG~~I~~~~------~~g--R~t~~CP~ 270 (273)
T 3u6p_A 235 QHHLYVYGRQGNPCKRCGTPIEKTV------VAG--RGTHYCPR 270 (273)
T ss_dssp --CCSSTTCTTSBCTTTCCBCEEEE------ETT--EEEEECTT
T ss_pred cceEEEeCCCcCCCCCCCCeEEEEE------ECC--CCeEECCC
Confidence 34445543 8999999987432 133 34567887
No 56
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=38.26 E-value=21 Score=25.31 Aligned_cols=16 Identities=19% Similarity=0.467 Sum_probs=13.3
Q ss_pred ecCCCCCccccceecc
Q 019981 272 KGPCPNCGTENVSFFG 287 (333)
Q Consensus 272 KG~CPNCGeEv~aFfg 287 (333)
.-.||+||.+.-.||-
T Consensus 9 ~~~Cp~Cg~~~a~f~q 24 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQ 24 (50)
T ss_dssp CSCCSSSCSSCEEEEE
T ss_pred ccCCCCCCCCEEEEEE
Confidence 4589999998888884
No 57
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=38.03 E-value=20 Score=34.76 Aligned_cols=60 Identities=20% Similarity=0.357 Sum_probs=33.9
Q ss_pred HHHHHHhhhhcce--eeeecCCCCCcccc--cee-cccccccc--CCCCccc---eeCCCCccccccCceeEEecc
Q 019981 256 LSQSLTKLIVRES--LILKGPCPNCGTEN--VSF-FGTILSIS--SGGTTNT---INCSNLTFCFSCGTTMVYDSN 321 (333)
Q Consensus 256 ~a~~Lt~l~~~D~--~iLKG~CPNCGeEv--~aF-fgtilsv~--s~~~~n~---vkC~~~aeCHVC~t~L~f~tk 321 (333)
+...|.....+|+ -+.+-||+.||.+- ..+ .|..-..+ ....... .+|++ |+....|-+.
T Consensus 101 ll~~LL~WFk~~fF~wvn~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~------C~~~~rFPRY 170 (335)
T 1x3z_A 101 LVKELLRYFKQDFFKWCNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNR------CGNITRFPRY 170 (335)
T ss_dssp HHHHHHHHHHHTTCEECSSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETT------TCCEEEEEEE
T ss_pred HHHHHHHHHHhcCCEeeCCCCccccCCCccccccccCCCCCChhhhccCCceEEEeecCC------CCcccccCCc
Confidence 3444555455664 46789999999763 344 56632111 1112222 34555 9999988544
No 58
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=37.15 E-value=13 Score=34.05 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=16.9
Q ss_pred cCCCCCccccceeccccccccCCCCccceeCCC
Q 019981 273 GPCPNCGTENVSFFGTILSISSGGTTNTINCSN 305 (333)
Q Consensus 273 G~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~ 305 (333)
-|||.||+++..-. -+++ +.+-|++
T Consensus 241 ~pC~~CG~~I~~~~------~~gR--~t~~CP~ 265 (268)
T 1k82_A 241 EPCRVCGTPIVATK------HAQR--ATFYCRQ 265 (268)
T ss_dssp SBCTTTCCBCEEEE------ETTE--EEEECTT
T ss_pred CCCCCCCCEeeEEE------ECCC--ceEECCC
Confidence 47999999987543 2333 4567887
No 59
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=35.61 E-value=28 Score=25.34 Aligned_cols=34 Identities=29% Similarity=0.712 Sum_probs=23.7
Q ss_pred cCCCCCccccceeccccccccCCCCccceeCCC----CccccccCcee
Q 019981 273 GPCPNCGTENVSFFGTILSISSGGTTNTINCSN----LTFCFSCGTTM 316 (333)
Q Consensus 273 G~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~----~aeCHVC~t~L 316 (333)
-+||+|+..|-- +..=|.+.|.+ ..+|-+|+...
T Consensus 7 k~CP~C~~~Iek----------~~GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 7 KECPKCHVTIEK----------DGGCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCTTTCCCCSS----------CCSCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred eECcCCCCeeEe----------CCCCCcEEECCCCcCCEEeeCcCCCc
Confidence 589999987653 33456667652 47888998764
No 60
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=34.43 E-value=15 Score=33.41 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=16.5
Q ss_pred CCCCCccccceeccccccccCCCCccceeCCC
Q 019981 274 PCPNCGTENVSFFGTILSISSGGTTNTINCSN 305 (333)
Q Consensus 274 ~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~ 305 (333)
|||.||+++..-. -+++ .++-|++
T Consensus 236 pC~~CG~~I~~~~------~~gR--~t~~CP~ 259 (262)
T 1k3x_A 236 PCERCGSIIEKTT------LSSR--PFYWCPG 259 (262)
T ss_dssp BCTTTCCBCEEEE------ETTE--EEEECTT
T ss_pred CCCCCCCEeEEEE------ECCC--CeEECCC
Confidence 8999999987433 2344 4567887
No 61
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=34.26 E-value=21 Score=23.60 Aligned_cols=27 Identities=33% Similarity=0.655 Sum_probs=19.1
Q ss_pred CCCCccccceeccccccccCCCCccceeCCCCccccccCceeEE
Q 019981 275 CPNCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTTMVY 318 (333)
Q Consensus 275 CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~L~f 318 (333)
|+.||..|-..... ...+.| ||.+|+.
T Consensus 9 C~~CGnivev~~~g---------~~~l~C--------CG~~M~~ 35 (36)
T 1dxg_A 9 CELCGQVVKVLEEG---------GGTLVC--------CGEDMVK 35 (36)
T ss_dssp CTTTCCEEEEEECC---------SSCEEE--------TTEECEE
T ss_pred cCCCCcEEEEEeCC---------CcCEEe--------CCcccCc
Confidence 89999888877532 245567 8888864
No 62
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=34.21 E-value=13 Score=33.07 Aligned_cols=36 Identities=22% Similarity=0.514 Sum_probs=24.9
Q ss_pred eeeeecCCCCCccccc-eeccccccccCCCCccceeCCCCccccccCceeEEec
Q 019981 268 SLILKGPCPNCGTENV-SFFGTILSISSGGTTNTINCSNLTFCFSCGTTMVYDS 320 (333)
Q Consensus 268 ~~iLKG~CPNCGeEv~-aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~L~f~t 320 (333)
+.-+.-.||+||..+| +.- -++..|.. |+-...|+-
T Consensus 109 v~~~~~~Cp~Cg~g~fma~h-----------~dR~~CGk------C~~t~~~~~ 145 (189)
T 2xzm_9 109 VSLQQKGCPKCGPGIFMAKH-----------YDRHYCGK------CHLTLKIDX 145 (189)
T ss_dssp EEECSEECSTTCSSCEEEEC-----------SSCEEETT------TCCCBCCHH
T ss_pred EEEccccCCccCCCccccCc-----------cCCCccCC------ceeEEEeec
Confidence 4557789999998776 221 13567877 988887764
No 63
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=34.10 E-value=14 Score=29.68 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=12.7
Q ss_pred eeeeecCCCCCccccc--eeccc
Q 019981 268 SLILKGPCPNCGTENV--SFFGT 288 (333)
Q Consensus 268 ~~iLKG~CPNCGeEv~--aFfgt 288 (333)
..-...-|++||.+.- .++.+
T Consensus 69 ~~p~~~~C~~CG~~~e~~~~~~~ 91 (119)
T 2kdx_A 69 DEKVELECKDCSHVFKPNALDYG 91 (119)
T ss_dssp EECCEEECSSSSCEECSCCSTTC
T ss_pred eccceEEcCCCCCEEeCCCCCCC
Confidence 3445677888887643 44443
No 64
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=34.02 E-value=17 Score=34.09 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=22.8
Q ss_pred hhcceeeeecCCCCCccccceeccccccccCCCCccceeCCCCccccccCceeE
Q 019981 264 IVRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTTMV 317 (333)
Q Consensus 264 ~~~D~~iLKG~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~L~ 317 (333)
+..|+- -...||+||..+-..+- .......-|.+ ||..++
T Consensus 14 ~~~~~~-~~~~Cp~Cg~~~~~iv~-------D~~~G~~vC~~------CG~Vl~ 53 (345)
T 3k7a_M 14 RGPNLN-IVLTCPECKVYPPKIVE-------RFSEGDVVCAL------CGLVLS 53 (345)
T ss_dssp ---CCC-CCCCCSTTCCSCCCCCC-------CSSSCSCCCSS------SCCCCC
T ss_pred cCcccc-CCCcCcCCCCCCCceEE-------ECCCCCEecCC------CCeEcc
Confidence 334443 24469999997422221 22445667887 999874
No 65
>2pfx_A Uncharacterized peroxidase-related protein; YP_614459.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE PG4; 1.70A {Silicibacter SP} SCOP: a.152.1.3
Probab=33.77 E-value=37 Score=28.42 Aligned_cols=75 Identities=9% Similarity=-0.013 Sum_probs=49.0
Q ss_pred cccchhHHHHHHHHHHHH---------hhhc-CccccChHHHhhhHhhhhhcCCeeEEeChhhHHHHHHHHhhhcCCCcc
Q 019981 91 EKKSLGELEQEFLQALQA---------FYYE-GKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIM 160 (333)
Q Consensus 91 ~k~slge~E~~fl~Al~~---------fY~~-gk~~~sdeefd~LkEeL~weGSsvv~L~~~Eq~fLEA~~AY~sGkPim 160 (333)
+.-+..++|++-+-.-+. .... .+.-+++|+-+.|.. .|.++ .+++.|+.-|+...+......-+
T Consensus 66 ~~L~~~~rEli~l~vs~~ngC~yC~~~H~~~a~~~G~~~~~i~~l~~--~~~~~---~~~~~e~a~l~~a~~lt~~~~~v 140 (191)
T 2pfx_A 66 SQLSKLEREMIAVVVSSINKCFYCLVAHGAAVRQLSGDPQLGEMLVM--NYRVA---PLDARQRVMLDFAAKMTRASAEI 140 (191)
T ss_dssp CSSCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTCHHHHHHHHH--CGGGS---CCCHHHHHHHHHHHHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHH--hhhcC---CCCHHHHHHHHHHHHHHhCcCCC
Confidence 445667777776655321 1112 223567888877765 38877 46899998887776654433359
Q ss_pred ChHHHHHHHH
Q 019981 161 SDEEYDKLKQ 170 (333)
Q Consensus 161 sDeeFD~LK~ 170 (333)
+|+.|+.|+.
T Consensus 141 ~d~~~~~l~~ 150 (191)
T 2pfx_A 141 EEADREVLRS 150 (191)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999999875
No 66
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=33.54 E-value=11 Score=30.46 Aligned_cols=14 Identities=57% Similarity=1.428 Sum_probs=10.1
Q ss_pred CCCCCccccceeccccc
Q 019981 274 PCPNCGTENVSFFGTIL 290 (333)
Q Consensus 274 ~CPNCGeEv~aFfgtil 290 (333)
-||.|||| |+|.-|
T Consensus 53 kCP~CgEE---FyG~~L 66 (95)
T 2k5c_A 53 KCPVCGEE---FYGKTL 66 (95)
T ss_dssp ECTTTCCE---EETTSS
T ss_pred cCCCccHH---HhcccC
Confidence 49999998 555433
No 67
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=32.70 E-value=18 Score=26.93 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=11.7
Q ss_pred CCCCCccccceeccccccc
Q 019981 274 PCPNCGTENVSFFGTILSI 292 (333)
Q Consensus 274 ~CPNCGeEv~aFfgtilsv 292 (333)
-|||||...-.-|.++..|
T Consensus 15 ~CpnC~~~tt~~~~G~v~i 33 (59)
T 3lpe_B 15 ICPICHSPTSENWIGLLIV 33 (59)
T ss_dssp BCTTTCCBEESCEECEEEE
T ss_pred CCCCCCCCccCCEeeEEEE
Confidence 4999997655444444444
No 68
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=31.39 E-value=11 Score=28.23 Aligned_cols=11 Identities=18% Similarity=0.555 Sum_probs=9.2
Q ss_pred CCCCCccccce
Q 019981 274 PCPNCGTENVS 284 (333)
Q Consensus 274 ~CPNCGeEv~a 284 (333)
-||+|||.+++
T Consensus 38 ~C~~CGE~~~~ 48 (78)
T 3ga8_A 38 YCVHCEESIMN 48 (78)
T ss_dssp EETTTCCEECC
T ss_pred ECCCCCCEEEC
Confidence 59999998764
No 69
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=30.74 E-value=16 Score=31.67 Aligned_cols=10 Identities=50% Similarity=0.899 Sum_probs=8.1
Q ss_pred ecCCCCCccc
Q 019981 272 KGPCPNCGTE 281 (333)
Q Consensus 272 KG~CPNCGeE 281 (333)
+.-|++||--
T Consensus 155 ~~~C~~CG~~ 164 (191)
T 1lko_A 155 KWRCRNCGYV 164 (191)
T ss_dssp EEEETTTCCE
T ss_pred eEEECCCCCE
Confidence 6779999954
No 70
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=30.59 E-value=33 Score=23.45 Aligned_cols=21 Identities=19% Similarity=0.716 Sum_probs=15.8
Q ss_pred cceeCCCCccccccCc-eeEEecc-ceee
Q 019981 299 NTINCSNLTFCFSCGT-TMVYDSN-TRLI 325 (333)
Q Consensus 299 n~vkC~~~aeCHVC~t-~L~f~tk-~R~i 325 (333)
+.++|++ |+. .|+||.. ..+|
T Consensus 4 ~~~~CP~------C~~~~l~~d~~~gelv 26 (50)
T 1pft_A 4 KQKVCPA------CESAELIYDPERGEIV 26 (50)
T ss_dssp SCCSCTT------TSCCCEEEETTTTEEE
T ss_pred ccEeCcC------CCCcceEEcCCCCeEE
Confidence 4567888 999 9999965 4544
No 71
>2oyo_A Uncharacterized peroxidase-related protein; YP_604910.1, uncharacterised peroxidase-related, uncharacter peroxidase-related; 1.51A {Deinococcus geothermalis} SCOP: a.152.1.3
Probab=29.32 E-value=53 Score=27.59 Aligned_cols=75 Identities=11% Similarity=0.037 Sum_probs=50.3
Q ss_pred cccchhHHHHHHHHHHHH---------hhhcC-ccccChHHHhhhHhhhhhcCCeeEEeChhhHHHHHHHHhhhcCCCcc
Q 019981 91 EKKSLGELEQEFLQALQA---------FYYEG-KAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIM 160 (333)
Q Consensus 91 ~k~slge~E~~fl~Al~~---------fY~~g-k~~~sdeefd~LkEeL~weGSsvv~L~~~Eq~fLEA~~AY~sGkPim 160 (333)
+.-+..++|++-+-.-+. .+... +.-+++++-+.|.. .|.++ .+++.|+.-|+...+......-+
T Consensus 71 ~~L~~~~rEli~l~vs~~ngC~yC~~~H~~~a~~~G~~~~~i~~l~~--~~~~~---~~~~~e~a~l~~a~~lt~~~~~v 145 (196)
T 2oyo_A 71 GYLTNAERELVAVVVSGVNRCLYCAVSHGAALREFLGDPQKADAVAV--NWRHA---DLTEREQALAAYAEKLTRHPAEV 145 (196)
T ss_dssp CSSCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTCHHHHHHHHH--CGGGS---CCCHHHHHHHHHHHHHHHCGGGC
T ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHH--hhhcC---CCCHHHHHHHHHHHHHHhCcCCC
Confidence 445667778777765442 11222 22567787777765 48887 36899998888877765544459
Q ss_pred ChHHHHHHHH
Q 019981 161 SDEEYDKLKQ 170 (333)
Q Consensus 161 sDeeFD~LK~ 170 (333)
+|+.|+.|+.
T Consensus 146 ~d~~~~~l~~ 155 (196)
T 2oyo_A 146 TAADLEPLRA 155 (196)
T ss_dssp CGGGGHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999999875
No 72
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=29.30 E-value=23 Score=27.71 Aligned_cols=31 Identities=29% Similarity=0.651 Sum_probs=21.3
Q ss_pred eecCCCCCccccceeccccccccCCCCccceeCCCCccccccCc
Q 019981 271 LKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGT 314 (333)
Q Consensus 271 LKG~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t 314 (333)
..|.||-|++..-+|. | +...+...|.. ||.
T Consensus 36 ~~~~CPfh~e~~pSf~-----V--~~~k~~~~Cf~------cg~ 66 (103)
T 1d0q_A 36 YFGLCPFHGEKTPSFS-----V--SPEKQIFHCFG------CGA 66 (103)
T ss_dssp EEECCSSSCCSSCCEE-----E--ETTTTEEEETT------TCC
T ss_pred EEEECCCCCCCCCcEE-----E--EcCCCEEEECC------CCC
Confidence 5689999998887764 2 23445566655 885
No 73
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=27.83 E-value=17 Score=26.54 Aligned_cols=11 Identities=9% Similarity=0.069 Sum_probs=8.5
Q ss_pred ecCCCCCcccc
Q 019981 272 KGPCPNCGTEN 282 (333)
Q Consensus 272 KG~CPNCGeEv 282 (333)
--.||||||-.
T Consensus 27 l~~c~~cGe~~ 37 (56)
T 3r8s_0 27 LSVDKTSGEKH 37 (56)
T ss_dssp EEECTTTCCEE
T ss_pred eeECCCCCCee
Confidence 35799999954
No 74
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.49 E-value=35 Score=24.92 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=21.8
Q ss_pred ecCCCCCccccceeccccccccCCCCccceeCCCCccccccCceeE
Q 019981 272 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTTMV 317 (333)
Q Consensus 272 KG~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~L~ 317 (333)
..-|+.|++.|. +..+ ...+..--..|= -|+.|+..|.
T Consensus 15 ~~~C~~C~~~I~---~~~v--~a~~~~~H~~CF---~C~~C~~~L~ 52 (79)
T 2cor_A 15 KYICQKCHAIID---EQPL--IFKNDPYHPDHF---NCANCGKELT 52 (79)
T ss_dssp CCBCTTTCCBCC---SCCC--CCSSSCCCTTTS---BCSSSCCBCC
T ss_pred CCCCccCCCEec---ceEE--EECcceeCCCCC---EeCCCCCccC
Confidence 346999999998 3332 222222223342 3666888775
No 75
>2prr_A Alkylhydroperoxidase AHPD core: uncharacterized P related protein; YP_296737.1, carboxymuconolactone decarboxylase family; HET: PGE; 2.15A {Ralstonia eutropha} SCOP: a.152.1.3
Probab=27.44 E-value=42 Score=28.26 Aligned_cols=75 Identities=9% Similarity=0.085 Sum_probs=48.7
Q ss_pred cccchhHHHHHHHHHHHH---------hhhc-CccccChHHHhhhHhhhhhcCCeeEEeChhhHHHHHHHHhhhcCCCcc
Q 019981 91 EKKSLGELEQEFLQALQA---------FYYE-GKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIM 160 (333)
Q Consensus 91 ~k~slge~E~~fl~Al~~---------fY~~-gk~~~sdeefd~LkEeL~weGSsvv~L~~~Eq~fLEA~~AY~sGkPim 160 (333)
+.-+..++|++-+-.-+. .... .+.-+++|+-+.|... |.++ .+++.|+.-|+...+.-....-+
T Consensus 67 ~~L~~~~rELi~l~vs~~ngC~yC~~~H~~~a~~~G~~~~~i~~l~~~--~~~~---~~~~~era~l~~a~~lt~~~~~v 141 (197)
T 2prr_A 67 GGLTKGEREMIVVATSAANQCLYCVVAHGAILRIYEKKPLVADQVAVN--YLKA---DIPPRQRAMLDFALKVCKASHEV 141 (197)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTHHHHHHHH--GGGS---SCCHHHHHHHHHHHHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHh--hhcC---CCCHHHHHHHHHHHHHHhCcCCC
Confidence 445667777776665431 1111 2224677777777643 8877 36899998888777754433359
Q ss_pred ChHHHHHHHH
Q 019981 161 SDEEYDKLKQ 170 (333)
Q Consensus 161 sDeeFD~LK~ 170 (333)
+|+.|+.|+.
T Consensus 142 ~d~~~~~l~~ 151 (197)
T 2prr_A 142 NEADFEALRE 151 (197)
T ss_dssp CHHHHHHHHT
T ss_pred CHHHHHHHHH
Confidence 9999999874
No 76
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=25.53 E-value=23 Score=26.23 Aligned_cols=10 Identities=40% Similarity=1.135 Sum_probs=7.7
Q ss_pred cCCCCCcccc
Q 019981 273 GPCPNCGTEN 282 (333)
Q Consensus 273 G~CPNCGeEv 282 (333)
..||||||-.
T Consensus 31 ~~c~~cGe~~ 40 (60)
T 3v2d_5 31 VPCPECKAMK 40 (60)
T ss_dssp EECTTTCCEE
T ss_pred eECCCCCCee
Confidence 4699999954
No 77
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=24.32 E-value=43 Score=31.52 Aligned_cols=25 Identities=24% Similarity=0.557 Sum_probs=16.9
Q ss_pred CCCCCccccce-eccccccccCCCCccceeCCC
Q 019981 274 PCPNCGTENVS-FFGTILSISSGGTTNTINCSN 305 (333)
Q Consensus 274 ~CPNCGeEv~a-Ffgtilsv~s~~~~n~vkC~~ 305 (333)
|||.||+.+.. -|| +++++ ++-|+.
T Consensus 253 pC~~CGt~I~~~~~g-----~~gRs--TyfCp~ 278 (287)
T 3w0f_A 253 NCDQCHSKITVCRFG-----ENSRM--TYFCPH 278 (287)
T ss_dssp BCTTTCCBCEEECSS-----TTCCC--EEECTT
T ss_pred CCCCCCCEEEEEEec-----CCCCC--EEECCC
Confidence 99999999874 332 12444 567876
No 78
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=24.01 E-value=24 Score=27.13 Aligned_cols=13 Identities=31% Similarity=1.004 Sum_probs=9.2
Q ss_pred eecCCCCCccccc
Q 019981 271 LKGPCPNCGTENV 283 (333)
Q Consensus 271 LKG~CPNCGeEv~ 283 (333)
-.--|||||.+.+
T Consensus 22 ~~~~CPnC~s~~t 34 (69)
T 1ryq_A 22 SEDRCPVCGSRDL 34 (69)
T ss_dssp SSSSCTTTCCCCE
T ss_pred cCCcCCCccCCcc
Confidence 3446999997764
No 79
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=23.67 E-value=27 Score=25.81 Aligned_cols=9 Identities=33% Similarity=1.121 Sum_probs=7.3
Q ss_pred CCCCCcccc
Q 019981 274 PCPNCGTEN 282 (333)
Q Consensus 274 ~CPNCGeEv 282 (333)
.|||||+..
T Consensus 32 ~c~~cG~~~ 40 (60)
T 2zjr_Z 32 ECPQCHGKK 40 (60)
T ss_dssp ECTTTCCEE
T ss_pred ECCCCCCEe
Confidence 599999874
No 80
>3m1m_A ORF904; primase, polymerase, replication; 1.85A {Sulfolobus islandicus}
Probab=23.64 E-value=29 Score=33.80 Aligned_cols=68 Identities=22% Similarity=0.425 Sum_probs=38.2
Q ss_pred HHhhhcCcc-ccChHHHhhhHhhhhhcCCeeEEeChhhHHHHHHHHhhhcCCCccChHHHHHHHHHHhhcCCceeeecCe
Q 019981 107 QAFYYEGKA-VMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKLKMEGSEIVVEGPR 185 (333)
Q Consensus 107 ~~fY~~gk~-~~sdeefd~LkEeL~weGSsvv~L~~~Eq~fLEA~~AY~sGkPimsDeeFD~LK~kLk~~GS~VVvk~Pr 185 (333)
..+-++.+. +.+.+||..|||| |..|-+||+| |++|.++=.+=++.....-.
T Consensus 209 ~~w~~~~~~~~~~~~~~~~~~~e---------------------~~k~~~~k~~------~~~~~~~c~~~~~~~~~~~~ 261 (335)
T 3m1m_A 209 KEWLEGKKEEEDTVVEFEELRKE---------------------LVKRDSGKPV------EKIKEEICTKSPPKLIKEII 261 (335)
T ss_dssp HHHHCC-----------CHHHHH---------------------HHHHCCCCCH------HHHHHHHHTSCCCHHHHHHH
T ss_pred HHHhcCcccccccHHHHHHHHHH---------------------HHhhcCCCcH------HHHHHHHHHhhhhhceeeee
Confidence 344454444 3356677777766 3347788876 67777776555555444444
Q ss_pred eeecCCceeecchhhHHHH
Q 019981 186 CSLRSRKVYSDLSVDYLKM 204 (333)
Q Consensus 186 Cslr~~~vySDae~D~lKm 204 (333)
| -++.|+|...|.++=
T Consensus 262 c---~~k~y~~~~~drsrg 277 (335)
T 3m1m_A 262 C---ENKTYADVNIDRSRG 277 (335)
T ss_dssp T---SCCCTTTTTCCHHHH
T ss_pred e---cCCchhhcccccccC
Confidence 5 567899999998873
No 81
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=23.52 E-value=51 Score=26.52 Aligned_cols=16 Identities=25% Similarity=0.831 Sum_probs=12.6
Q ss_pred ecCCCCCccccceecc
Q 019981 272 KGPCPNCGTENVSFFG 287 (333)
Q Consensus 272 KG~CPNCGeEv~aFfg 287 (333)
.-.||+||...-.||-
T Consensus 72 ~~~Cp~C~~~~a~~~q 87 (113)
T 3h0g_I 72 DKECPRCHQHEAVFYQ 87 (113)
T ss_dssp CSCCSSSCCSCEEEEC
T ss_pred ccCCCCCCCceEEEEE
Confidence 3689999988777773
No 82
>3g5o_A Uncharacterized protein RV2865; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=23.42 E-value=74 Score=25.28 Aligned_cols=48 Identities=19% Similarity=0.484 Sum_probs=32.2
Q ss_pred ccChHHHhhhHhhhhhcCCeeEEeChhhHHHHHHHHhhhcCCCccChHHHHHHHHHH
Q 019981 116 VMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKL 172 (333)
Q Consensus 116 ~~sdeefd~LkEeL~weGSsvv~L~~~Eq~fLEA~~AY~sGkPimsDeeFD~LK~kL 172 (333)
+||-|+|+.|.|.+-+-.+ ...-+...+|...+-.|+.+ .+|.++.+|
T Consensus 46 l~s~e~ye~l~etl~LL~~-----~~~~~~L~~a~~~~~~G~~~----s~eev~~~l 93 (108)
T 3g5o_A 46 LVGADEWESLQETLYWLAQ-----PGIRESIAEADADIASGRTY----GEDEIRAEF 93 (108)
T ss_dssp EEEHHHHHHHHHHHHHHTS-----TTHHHHHHHHHHHHHHTCEE----CHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHcCCCc----CHHHHHHHh
Confidence 6788899998887543221 12335566667779999986 456677777
No 83
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=22.90 E-value=33 Score=26.21 Aligned_cols=29 Identities=28% Similarity=0.652 Sum_probs=19.7
Q ss_pred CCCCCccccceeccccccccCCCCccceeCCCCccccccCceeEEec
Q 019981 274 PCPNCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTTMVYDS 320 (333)
Q Consensus 274 ~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~L~f~t 320 (333)
-|| ||.-. +. ...+.+.+|+ ||+.+.++.
T Consensus 6 ~C~-C~~~~--~~--------~~~~kT~~C~-------CG~~~~~~k 34 (71)
T 1gh9_A 6 RCD-CGRAL--YS--------REGAKTRKCV-------CGRTVNVKD 34 (71)
T ss_dssp EET-TSCCE--EE--------ETTCSEEEET-------TTEEEECCS
T ss_pred ECC-CCCEE--EE--------cCCCcEEECC-------CCCeeeece
Confidence 389 99753 33 2255567884 999998864
No 84
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Probab=22.59 E-value=76 Score=30.03 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=19.8
Q ss_pred HHHHHHhhhhcce--eeeecCCCCCccccce
Q 019981 256 LSQSLTKLIVRES--LILKGPCPNCGTENVS 284 (333)
Q Consensus 256 ~a~~Lt~l~~~D~--~iLKG~CPNCGeEv~a 284 (333)
+...|.+...+++ -.++-||++||.+...
T Consensus 63 ~~~~ll~wFk~~fF~~~~~P~c~~C~~~~~~ 93 (295)
T 2f4m_A 63 LLLELLHWFKEEFFRWVNNIVCSKCGGETRS 93 (295)
T ss_dssp HHHHHHHHHHHTTCEECSSCCCTTTCCCCEE
T ss_pred HHHHHHHHHHhcCCEEeCCCCCcccCCcccc
Confidence 3444555555655 4788999999988763
No 85
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=21.66 E-value=35 Score=32.55 Aligned_cols=31 Identities=23% Similarity=0.668 Sum_probs=21.5
Q ss_pred eecCCCCCccccceeccccccccCCCCccceeCCCCccccccCc
Q 019981 271 LKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGT 314 (333)
Q Consensus 271 LKG~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t 314 (333)
.+|.||-|++..-+|. | +...+..+|.. ||.
T Consensus 33 ~~~~CPfh~ektpSf~-----V--~~~k~~~~CFg------Cg~ 63 (407)
T 2au3_A 33 YRTNCPFHPDDTPSFY-----V--SPSKQIFKCFG------CGV 63 (407)
T ss_dssp EEECCSSSCCSSCCEE-----E--ETTTTEEEETT------TCC
T ss_pred EEeeCcCCCCCCCeEE-----E--ECCCCEEEECC------CCC
Confidence 6799999999888874 2 22345566654 874
No 86
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.63 E-value=29 Score=24.85 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=21.6
Q ss_pred cCCCCCccccceeccccccccCCCCccceeCCCCccccccCceeE
Q 019981 273 GPCPNCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTTMV 317 (333)
Q Consensus 273 G~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~L~ 317 (333)
..|+.|+++|..+ |+..-|...+..--..|= -|+.|+..|.
T Consensus 6 ~~C~~C~~~I~~~-g~~~~~~a~~~~wH~~CF---~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGL-TGAKFICFQDSQWHSECF---NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTT-TTCCEEEETTEEEEGGGC---BCTTTCCBCS
T ss_pred CCCccCCCcccCC-CCceeEEECCcccCcccC---ChhhCCCcCC
Confidence 4699999999852 111111222222223442 3666888875
No 87
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=21.12 E-value=30 Score=27.45 Aligned_cols=15 Identities=33% Similarity=1.101 Sum_probs=10.6
Q ss_pred CCCCCccccc--eeccc
Q 019981 274 PCPNCGTENV--SFFGT 288 (333)
Q Consensus 274 ~CPNCGeEv~--aFfgt 288 (333)
-|||||.+.+ .|.|-
T Consensus 37 ~CPnCgs~~~T~~w~G~ 53 (81)
T 3p8b_A 37 RCPVCGSRDLSEEWFDL 53 (81)
T ss_dssp SCTTTCCCCEESCEEEE
T ss_pred CCCCCCCCccCCccceE
Confidence 5999998774 35544
No 88
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=21.07 E-value=43 Score=28.70 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=22.8
Q ss_pred ecCCCCCccccceeccccccccCCCCccceeCCCCccccccCceeEEeccce
Q 019981 272 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTTMVYDSNTR 323 (333)
Q Consensus 272 KG~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~L~f~tk~R 323 (333)
.--|||||.+.-........ +... ....|+. ||..|+......
T Consensus 78 ~~~c~~~~~~~~~~~~~~~~-~~~~--~~~~c~~------~g~~~~~~e~~~ 120 (166)
T 3ir9_A 78 TTKCSVCGYENKWTRRWKPG-EPAP--AAGNCPK------CGSSLEVTDVTD 120 (166)
T ss_dssp EEEESSSSCEEEEEECCCC---CCC--CCCBCTT------TCCBEEEEEEEE
T ss_pred EEECCCCCceeEEEeecChh-hccc--ccccccc------cCccchhhhHHH
Confidence 34599999866544322110 0011 1224555 999988765443
No 89
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.28 E-value=61 Score=23.21 Aligned_cols=36 Identities=22% Similarity=0.661 Sum_probs=20.5
Q ss_pred CCCCCccccceeccccccccCCCCccceeCCCCccccccCceeE
Q 019981 274 PCPNCGTENVSFFGTILSISSGGTTNTINCSNLTFCFSCGTTMV 317 (333)
Q Consensus 274 ~CPNCGeEv~aFfgtilsv~s~~~~n~vkC~~~aeCHVC~t~L~ 317 (333)
.|+.|+..|.. ..+ ...+..--..|= -|+.|+..|.
T Consensus 7 ~C~~C~~~I~~---~~v--~a~~~~wH~~CF---~C~~C~~~L~ 42 (73)
T 1wig_A 7 GCDSCEKYITG---RVL--EAGEKHYHPSCA---LCVRCGQMFA 42 (73)
T ss_dssp SCSSSCCCCSS---CCB--CCSSCCBCTTTS---CCSSSCCCCC
T ss_pred CcccCCCEecC---eeE--EeCCCCCCCCcC---EeCCCCCCCC
Confidence 69999999974 222 222222223443 3666887775
No 90
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=20.16 E-value=69 Score=30.22 Aligned_cols=17 Identities=24% Similarity=0.708 Sum_probs=12.7
Q ss_pred eeecCCCCCccccc-eec
Q 019981 270 ILKGPCPNCGTENV-SFF 286 (333)
Q Consensus 270 iLKG~CPNCGeEv~-aFf 286 (333)
--+|-||.||..=. +.+
T Consensus 180 ~~~~~CPvCGs~P~~s~l 197 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMI 197 (309)
T ss_dssp TTCSSCTTTCCCEEEEEE
T ss_pred ccCCCCCCCCCcCceeEE
Confidence 56899999998654 444
Done!