Query 019982
Match_columns 333
No_of_seqs 81 out of 83
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 06:05:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019982.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019982hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02671 PAH: Paired amphipath 96.9 0.0026 5.7E-08 45.3 5.5 46 282-328 1-46 (47)
2 PF06637 PV-1: PV-1 protein (P 96.8 0.017 3.7E-07 58.5 12.0 61 55-115 315-375 (442)
3 PF08614 ATG16: Autophagy prot 96.1 0.082 1.8E-06 47.8 11.1 61 51-115 131-192 (194)
4 PRK10884 SH3 domain-containing 96.0 0.085 1.8E-06 49.1 11.1 68 41-115 91-158 (206)
5 PF12718 Tropomyosin_1: Tropom 95.9 0.19 4.1E-06 44.2 12.2 81 35-115 6-92 (143)
6 PRK11637 AmiB activator; Provi 95.8 0.13 2.8E-06 51.5 12.4 109 11-128 17-135 (428)
7 COG2433 Uncharacterized conser 95.5 0.21 4.6E-06 53.3 12.7 85 39-123 425-515 (652)
8 PF12329 TMF_DNA_bd: TATA elem 95.2 0.26 5.7E-06 39.0 9.5 24 54-77 2-25 (74)
9 PF11559 ADIP: Afadin- and alp 95.1 0.41 8.9E-06 41.4 11.3 63 50-116 59-121 (151)
10 PRK11637 AmiB activator; Provi 95.0 0.47 1E-05 47.6 13.0 68 43-114 68-135 (428)
11 PF11559 ADIP: Afadin- and alp 94.7 0.4 8.7E-06 41.5 10.4 74 43-116 66-146 (151)
12 PF08614 ATG16: Autophagy prot 94.5 0.39 8.5E-06 43.5 10.2 85 41-125 93-180 (194)
13 PF10186 Atg14: UV radiation r 94.4 0.92 2E-05 41.9 12.7 87 42-128 62-155 (302)
14 PRK09039 hypothetical protein; 94.3 0.7 1.5E-05 45.8 12.3 88 40-127 113-204 (343)
15 PF10473 CENP-F_leu_zip: Leuci 93.6 1.9 4.2E-05 38.3 12.3 85 40-128 21-112 (140)
16 KOG0977 Nuclear envelope prote 93.5 1.2 2.5E-05 47.3 12.7 83 31-113 95-193 (546)
17 COG1579 Zn-ribbon protein, pos 93.4 1.3 2.8E-05 42.5 11.7 28 33-60 49-76 (239)
18 PF14197 Cep57_CLD_2: Centroso 93.4 1.2 2.5E-05 35.1 9.5 58 47-104 2-62 (69)
19 PRK03918 chromosome segregatio 93.4 2.4 5.3E-05 45.5 15.1 33 20-52 153-185 (880)
20 PRK10884 SH3 domain-containing 92.9 0.93 2E-05 42.3 9.8 64 40-110 97-160 (206)
21 PF04156 IncA: IncA protein; 92.7 3.2 6.9E-05 36.8 12.6 83 40-122 85-170 (191)
22 COG1579 Zn-ribbon protein, pos 92.6 3.1 6.8E-05 39.9 13.1 81 32-114 22-114 (239)
23 PRK02224 chromosome segregatio 92.4 3.6 7.7E-05 44.5 14.7 23 102-124 278-300 (880)
24 TIGR03185 DNA_S_dndD DNA sulfu 92.2 2.7 5.8E-05 44.6 13.3 44 38-81 393-438 (650)
25 KOG0288 WD40 repeat protein Ti 92.1 1.6 3.4E-05 45.2 11.0 61 66-130 43-103 (459)
26 PF04111 APG6: Autophagy prote 92.1 2.3 5E-05 41.8 11.9 77 40-116 47-133 (314)
27 KOG0994 Extracellular matrix g 91.9 4.1 8.9E-05 47.1 14.7 111 14-124 1497-1637(1758)
28 COG5602 SIN3 Histone deacetyla 91.9 1.2 2.5E-05 49.9 10.5 84 247-331 244-335 (1163)
29 PF09789 DUF2353: Uncharacteri 91.9 1.5 3.3E-05 43.7 10.4 72 40-115 90-180 (319)
30 PHA02562 46 endonuclease subun 91.5 2.5 5.4E-05 43.0 11.8 98 18-115 141-246 (562)
31 KOG3990 Uncharacterized conser 91.5 0.64 1.4E-05 45.4 7.1 34 45-78 227-260 (305)
32 PHA02562 46 endonuclease subun 91.5 2.2 4.8E-05 43.4 11.4 11 285-295 515-525 (562)
33 KOG0994 Extracellular matrix g 91.3 1 2.2E-05 51.6 9.4 77 40-116 1198-1294(1758)
34 PF09755 DUF2046: Uncharacteri 91.3 4.6 9.9E-05 40.3 12.9 86 39-128 109-203 (310)
35 PF03148 Tektin: Tektin family 91.2 7.8 0.00017 38.9 14.7 99 28-126 236-354 (384)
36 PF11180 DUF2968: Protein of u 91.1 3.7 8E-05 38.5 11.5 75 43-117 105-182 (192)
37 KOG3433 Protein involved in me 91.1 1.6 3.6E-05 40.8 9.1 79 39-128 77-155 (203)
38 PF10205 KLRAQ: Predicted coil 90.8 3.6 7.8E-05 35.0 10.1 67 47-113 2-71 (102)
39 PF05700 BCAS2: Breast carcino 90.6 11 0.00024 35.0 14.3 89 29-117 122-210 (221)
40 PF08647 BRE1: BRE1 E3 ubiquit 90.5 7.9 0.00017 31.8 11.8 79 45-127 5-90 (96)
41 PF13870 DUF4201: Domain of un 90.5 10 0.00022 33.7 13.4 64 52-115 51-117 (177)
42 PF10224 DUF2205: Predicted co 90.5 1.3 2.8E-05 36.1 7.0 41 70-110 22-65 (80)
43 TIGR02169 SMC_prok_A chromosom 90.4 4.1 9E-05 44.4 12.9 12 304-315 1138-1149(1164)
44 PF13851 GAS: Growth-arrest sp 89.9 16 0.00035 33.8 14.6 78 39-116 44-127 (201)
45 PF08317 Spc7: Spc7 kinetochor 89.8 6.2 0.00013 38.6 12.4 14 44-57 185-198 (325)
46 KOG1103 Predicted coiled-coil 89.8 10 0.00022 39.1 14.1 75 42-120 219-300 (561)
47 COG4942 Membrane-bound metallo 89.8 3.4 7.4E-05 42.7 10.9 39 43-81 38-76 (420)
48 PF12718 Tropomyosin_1: Tropom 89.7 6.7 0.00014 34.5 11.4 71 40-110 39-122 (143)
49 PF12325 TMF_TATA_bd: TATA ele 89.6 6.8 0.00015 33.9 11.2 71 54-128 20-93 (120)
50 KOG0995 Centromere-associated 89.5 4.4 9.4E-05 43.4 11.7 47 85-131 304-367 (581)
51 KOG4010 Coiled-coil protein TP 89.4 0.62 1.4E-05 43.6 4.9 35 40-74 48-82 (208)
52 PF03962 Mnd1: Mnd1 family; I 89.3 6 0.00013 36.3 11.2 64 47-115 66-129 (188)
53 TIGR02169 SMC_prok_A chromosom 89.2 5.6 0.00012 43.5 12.7 11 311-321 1130-1140(1164)
54 PF10146 zf-C4H2: Zinc finger- 89.0 5.5 0.00012 37.9 11.0 41 92-132 70-111 (230)
55 PF15619 Lebercilin: Ciliary p 88.9 3.5 7.7E-05 38.1 9.5 61 46-106 121-188 (194)
56 PF09726 Macoilin: Transmembra 88.7 2.1 4.5E-05 46.6 9.0 55 47-101 422-479 (697)
57 PF14197 Cep57_CLD_2: Centroso 88.6 3.4 7.5E-05 32.5 7.9 55 63-121 4-62 (69)
58 PF08172 CASP_C: CASP C termin 88.4 4.3 9.3E-05 39.0 10.0 34 46-79 2-35 (248)
59 PF04156 IncA: IncA protein; 88.4 11 0.00024 33.4 12.0 70 47-116 78-150 (191)
60 TIGR03752 conj_TIGR03752 integ 88.3 4.2 9.2E-05 42.6 10.6 41 41-81 64-104 (472)
61 PF05266 DUF724: Protein of un 88.2 7.9 0.00017 35.8 11.3 70 43-116 103-179 (190)
62 PF10186 Atg14: UV radiation r 88.1 20 0.00043 33.2 13.9 42 40-81 67-108 (302)
63 KOG0161 Myosin class II heavy 88.0 5.5 0.00012 48.0 12.4 92 38-129 1317-1419(1930)
64 PF09726 Macoilin: Transmembra 87.8 5.2 0.00011 43.6 11.3 41 36-76 538-578 (697)
65 PF11068 YlqD: YlqD protein; 87.8 5 0.00011 35.2 9.3 65 62-130 18-87 (131)
66 PRK02224 chromosome segregatio 87.8 10 0.00023 41.0 13.6 40 42-81 515-554 (880)
67 KOG2685 Cystoskeletal protein 87.8 20 0.00043 37.3 14.7 99 26-124 261-379 (421)
68 smart00787 Spc7 Spc7 kinetocho 87.5 9 0.0002 37.9 11.8 51 51-101 205-258 (312)
69 PF08317 Spc7: Spc7 kinetochor 87.3 13 0.00029 36.3 12.9 89 41-129 154-263 (325)
70 KOG4398 Predicted coiled-coil 87.3 3.6 7.7E-05 41.0 8.8 84 40-127 2-89 (359)
71 PF00261 Tropomyosin: Tropomyo 87.2 10 0.00022 35.4 11.6 54 28-81 99-158 (237)
72 smart00787 Spc7 Spc7 kinetocho 87.0 12 0.00025 37.1 12.4 78 41-129 177-258 (312)
73 TIGR03017 EpsF chain length de 87.0 6.4 0.00014 39.1 10.7 91 40-130 258-369 (444)
74 COG4942 Membrane-bound metallo 86.8 7.1 0.00015 40.4 11.0 66 50-119 38-103 (420)
75 PF10805 DUF2730: Protein of u 86.7 3.1 6.7E-05 34.8 7.1 39 42-80 48-88 (106)
76 PF11932 DUF3450: Protein of u 86.5 16 0.00035 34.2 12.5 53 29-81 26-80 (251)
77 TIGR03185 DNA_S_dndD DNA sulfu 86.5 9.2 0.0002 40.6 12.1 13 265-278 614-626 (650)
78 KOG0804 Cytoplasmic Zn-finger 86.5 13 0.00027 39.2 12.6 97 27-127 327-441 (493)
79 COG4026 Uncharacterized protei 86.4 14 0.00031 36.0 12.1 85 29-113 104-201 (290)
80 PF07106 TBPIP: Tat binding pr 86.4 8 0.00017 34.1 9.9 37 41-77 91-129 (169)
81 PF05911 DUF869: Plant protein 86.3 5.4 0.00012 44.1 10.5 60 35-95 10-72 (769)
82 PF13870 DUF4201: Domain of un 86.2 17 0.00036 32.4 11.9 53 25-81 42-94 (177)
83 PF13851 GAS: Growth-arrest sp 86.2 17 0.00038 33.6 12.3 81 43-123 62-148 (201)
84 PF00769 ERM: Ezrin/radixin/mo 86.1 9.9 0.00021 36.2 11.0 78 41-118 10-97 (246)
85 PF04899 MbeD_MobD: MbeD/MobD 86.1 8.9 0.00019 30.5 8.9 35 82-116 35-69 (70)
86 PF02050 FliJ: Flagellar FliJ 86.0 15 0.00032 28.8 11.2 80 41-124 17-101 (123)
87 PF06810 Phage_GP20: Phage min 86.0 5.1 0.00011 35.7 8.5 34 40-73 17-50 (155)
88 KOG4204 Histone deacetylase co 85.8 2.2 4.8E-05 40.5 6.4 64 265-329 18-83 (231)
89 TIGR03007 pepcterm_ChnLen poly 85.8 7.9 0.00017 39.2 10.8 42 40-81 251-292 (498)
90 PF12325 TMF_TATA_bd: TATA ele 85.8 6.2 0.00013 34.2 8.6 19 42-60 22-40 (120)
91 PF00038 Filament: Intermediat 85.7 31 0.00067 32.7 14.1 72 50-121 216-294 (312)
92 PF12329 TMF_DNA_bd: TATA elem 85.7 3.7 7.9E-05 32.5 6.6 46 69-118 3-48 (74)
93 PF06005 DUF904: Protein of un 85.4 14 0.00031 29.3 9.8 23 86-108 43-65 (72)
94 KOG0161 Myosin class II heavy 85.3 10 0.00023 45.8 12.7 105 28-132 1696-1823(1930)
95 TIGR01843 type_I_hlyD type I s 85.2 29 0.00064 33.5 14.0 41 40-80 141-181 (423)
96 PF13863 DUF4200: Domain of un 85.1 20 0.00044 29.6 13.3 60 67-126 42-104 (126)
97 PF04201 TPD52: Tumour protein 85.0 12 0.00027 34.2 10.5 33 41-73 34-66 (162)
98 PF07888 CALCOCO1: Calcium bin 84.9 21 0.00046 38.2 13.6 38 40-77 161-198 (546)
99 PF15070 GOLGA2L5: Putative go 84.7 25 0.00054 38.0 14.3 20 41-60 48-67 (617)
100 PF07888 CALCOCO1: Calcium bin 84.7 11 0.00025 40.1 11.6 36 46-81 160-195 (546)
101 PRK10698 phage shock protein P 84.6 17 0.00036 34.1 11.6 29 88-116 98-126 (222)
102 COG1322 Predicted nuclease of 84.3 25 0.00054 36.7 13.7 41 89-129 98-155 (448)
103 PF12777 MT: Microtubule-bindi 84.0 5.1 0.00011 39.4 8.3 74 24-102 180-276 (344)
104 COG1196 Smc Chromosome segrega 84.0 13 0.00029 42.2 12.5 34 282-315 969-1002(1163)
105 TIGR00606 rad50 rad50. This fa 83.7 11 0.00024 43.3 11.9 71 45-115 1007-1087(1311)
106 TIGR02559 HrpB7 type III secre 83.6 11 0.00023 34.5 9.4 62 38-99 81-148 (158)
107 KOG0963 Transcription factor/C 83.4 11 0.00025 40.7 11.0 98 29-127 227-341 (629)
108 PF05377 FlaC_arch: Flagella a 83.4 5 0.00011 30.8 6.2 38 66-114 2-39 (55)
109 PF10174 Cast: RIM-binding pro 83.4 11 0.00023 41.9 11.1 73 44-116 393-492 (775)
110 KOG4005 Transcription factor X 83.4 12 0.00026 36.6 10.2 80 42-127 58-146 (292)
111 TIGR02231 conserved hypothetic 83.3 12 0.00025 38.7 10.9 78 40-117 68-166 (525)
112 PF10473 CENP-F_leu_zip: Leuci 83.3 19 0.0004 32.1 10.7 71 41-114 64-137 (140)
113 PF03962 Mnd1: Mnd1 family; I 83.3 8 0.00017 35.5 8.7 31 40-70 66-96 (188)
114 KOG0250 DNA repair protein RAD 83.2 12 0.00027 42.7 11.6 37 92-128 390-426 (1074)
115 PF11594 Med28: Mediator compl 83.2 8.5 0.00018 33.0 8.2 52 30-81 14-73 (106)
116 KOG2129 Uncharacterized conser 82.7 22 0.00048 37.4 12.3 85 37-124 202-317 (552)
117 TIGR01005 eps_transp_fam exopo 82.6 9.6 0.00021 40.9 10.3 31 102-132 375-405 (754)
118 KOG1962 B-cell receptor-associ 82.6 6.5 0.00014 37.4 8.0 61 51-115 135-198 (216)
119 PF15035 Rootletin: Ciliary ro 82.6 9.6 0.00021 35.0 8.9 21 95-115 94-114 (182)
120 TIGR03017 EpsF chain length de 82.5 21 0.00045 35.5 11.9 21 52-72 256-276 (444)
121 PF05667 DUF812: Protein of un 82.3 14 0.00029 39.8 11.1 11 111-121 395-405 (594)
122 PF05911 DUF869: Plant protein 82.2 15 0.00033 40.6 11.7 70 31-102 89-161 (769)
123 PF10168 Nup88: Nuclear pore c 82.1 12 0.00027 40.9 10.9 65 38-106 560-624 (717)
124 PF09486 HrpB7: Bacterial type 82.0 6.8 0.00015 35.5 7.6 53 40-92 83-141 (158)
125 TIGR00606 rad50 rad50. This fa 82.0 24 0.00051 40.8 13.6 52 30-81 874-926 (1311)
126 PF00038 Filament: Intermediat 82.0 24 0.00051 33.5 11.7 21 40-60 15-35 (312)
127 PF10168 Nup88: Nuclear pore c 81.9 12 0.00025 41.1 10.6 60 53-116 546-606 (717)
128 COG1196 Smc Chromosome segrega 81.6 28 0.00062 39.7 13.9 35 90-124 447-481 (1163)
129 PF09755 DUF2046: Uncharacteri 81.5 24 0.00053 35.3 11.9 40 82-124 254-293 (310)
130 PF10158 LOH1CR12: Tumour supp 81.4 13 0.00029 32.5 9.0 87 17-108 19-116 (131)
131 PF04012 PspA_IM30: PspA/IM30 81.0 44 0.00095 30.4 15.1 102 25-129 23-131 (221)
132 PF06818 Fez1: Fez1; InterPro 80.8 13 0.00029 35.0 9.3 68 49-116 30-100 (202)
133 TIGR02680 conserved hypothetic 80.8 15 0.00032 42.9 11.5 40 42-81 741-780 (1353)
134 TIGR03007 pepcterm_ChnLen poly 80.7 17 0.00037 36.8 10.8 88 43-130 275-382 (498)
135 KOG0995 Centromere-associated 80.4 12 0.00026 40.2 9.8 91 40-131 284-385 (581)
136 KOG4674 Uncharacterized conser 80.4 16 0.00034 44.1 11.6 37 45-81 1309-1345(1822)
137 PF09798 LCD1: DNA damage chec 80.3 7.7 0.00017 42.2 8.6 55 55-109 2-60 (654)
138 PF05781 MRVI1: MRVI1 protein; 79.9 28 0.00061 37.3 12.2 99 26-125 196-325 (538)
139 PF00170 bZIP_1: bZIP transcri 79.8 11 0.00023 28.4 6.9 20 61-80 23-42 (64)
140 PF11544 Spc42p: Spindle pole 79.8 18 0.0004 29.4 8.5 52 48-103 3-54 (76)
141 PF09789 DUF2353: Uncharacteri 79.7 10 0.00022 37.9 8.6 74 42-115 78-152 (319)
142 KOG0977 Nuclear envelope prote 79.6 33 0.00072 36.8 12.8 88 44-131 149-256 (546)
143 TIGR01005 eps_transp_fam exopo 79.6 18 0.00038 38.9 11.0 34 47-80 299-332 (754)
144 TIGR00634 recN DNA repair prot 79.6 12 0.00026 39.1 9.6 48 83-130 340-392 (563)
145 PF04012 PspA_IM30: PspA/IM30 79.5 36 0.00079 30.9 11.6 48 15-63 24-71 (221)
146 PF14817 HAUS5: HAUS augmin-li 79.4 24 0.00053 38.3 11.9 75 44-118 80-164 (632)
147 TIGR01843 type_I_hlyD type I s 79.1 64 0.0014 31.2 15.1 41 41-81 135-175 (423)
148 KOG0249 LAR-interacting protei 79.0 18 0.00039 40.2 10.7 43 82-124 209-251 (916)
149 PF11740 KfrA_N: Plasmid repli 78.9 16 0.00035 29.9 8.3 63 11-80 56-118 (120)
150 PF14662 CCDC155: Coiled-coil 78.7 27 0.00058 32.9 10.5 58 48-105 65-125 (193)
151 PF06005 DUF904: Protein of un 78.7 31 0.00068 27.4 9.7 8 67-74 7-14 (72)
152 PF11932 DUF3450: Protein of u 78.7 58 0.0013 30.5 13.7 50 28-78 21-70 (251)
153 TIGR00634 recN DNA repair prot 78.6 7.2 0.00016 40.7 7.6 57 25-81 142-199 (563)
154 PF10779 XhlA: Haemolysin XhlA 78.5 11 0.00023 29.3 6.8 46 68-117 3-48 (71)
155 PF08826 DMPK_coil: DMPK coile 78.2 30 0.00065 26.9 9.1 56 46-109 4-59 (61)
156 COG2433 Uncharacterized conser 78.1 35 0.00076 37.2 12.4 86 40-126 419-508 (652)
157 KOG4552 Vitamin-D-receptor int 78.1 15 0.00033 35.4 8.9 37 45-81 69-105 (272)
158 KOG0244 Kinesin-like protein [ 78.1 12 0.00025 42.2 9.2 93 39-132 512-608 (913)
159 TIGR03495 phage_LysB phage lys 78.0 18 0.0004 32.0 8.8 33 49-81 18-50 (135)
160 PF14362 DUF4407: Domain of un 78.0 51 0.0011 31.5 12.6 82 49-130 134-238 (301)
161 PF02601 Exonuc_VII_L: Exonucl 77.9 57 0.0012 31.3 12.9 100 27-127 149-257 (319)
162 PRK09039 hypothetical protein; 77.8 22 0.00047 35.4 10.3 12 115-126 174-185 (343)
163 PF06156 DUF972: Protein of un 77.7 18 0.00039 30.7 8.4 26 85-110 32-57 (107)
164 KOG0250 DNA repair protein RAD 77.6 20 0.00043 41.1 10.9 28 303-331 915-942 (1074)
165 KOG0980 Actin-binding protein 77.6 48 0.001 37.6 13.6 43 84-126 454-507 (980)
166 PF10211 Ax_dynein_light: Axon 77.4 20 0.00044 32.8 9.3 25 94-118 161-185 (189)
167 PF05529 Bap31: B-cell recepto 77.2 9.3 0.0002 34.3 7.0 68 40-111 122-190 (192)
168 KOG0933 Structural maintenance 77.0 18 0.00038 41.5 10.2 79 44-122 844-925 (1174)
169 KOG0962 DNA repair protein RAD 77.0 24 0.00052 41.3 11.5 80 39-124 1011-1096(1294)
170 PF05278 PEARLI-4: Arabidopsis 76.8 42 0.00091 33.0 11.7 63 50-112 193-258 (269)
171 PF04111 APG6: Autophagy prote 76.8 53 0.0012 32.4 12.6 40 42-81 42-81 (314)
172 PRK10361 DNA recombination pro 76.5 97 0.0021 32.8 14.9 33 281-313 378-410 (475)
173 PRK10361 DNA recombination pro 76.4 43 0.00094 35.3 12.4 46 82-127 99-161 (475)
174 PRK02119 hypothetical protein; 76.4 17 0.00036 28.8 7.4 30 100-129 27-56 (73)
175 TIGR01000 bacteriocin_acc bact 76.4 18 0.00039 36.7 9.4 26 44-69 237-262 (457)
176 KOG0288 WD40 repeat protein Ti 76.1 27 0.00058 36.5 10.6 40 42-81 33-72 (459)
177 PF05622 HOOK: HOOK protein; 76.0 0.85 1.9E-05 48.9 0.0 32 42-77 307-338 (713)
178 PF15619 Lebercilin: Ciliary p 76.0 38 0.00083 31.4 10.7 43 39-81 57-99 (194)
179 PF15290 Syntaphilin: Golgi-lo 75.8 40 0.00087 33.7 11.2 90 26-120 62-166 (305)
180 COG3334 Uncharacterized conser 75.7 38 0.00083 31.8 10.6 86 20-111 44-134 (192)
181 PF05384 DegS: Sensor protein 75.7 63 0.0014 29.4 11.7 78 41-119 46-128 (159)
182 PF05377 FlaC_arch: Flagella a 75.6 10 0.00022 29.1 5.6 38 44-81 1-38 (55)
183 PF06120 Phage_HK97_TLTM: Tail 75.6 61 0.0013 32.3 12.6 76 47-122 71-164 (301)
184 COG5185 HEC1 Protein involved 75.4 33 0.00072 36.6 11.2 60 52-111 332-397 (622)
185 PF09744 Jnk-SapK_ap_N: JNK_SA 75.4 63 0.0014 29.2 12.1 70 47-116 54-123 (158)
186 PRK04863 mukB cell division pr 75.3 66 0.0014 38.4 14.7 23 39-61 317-339 (1486)
187 PRK12704 phosphodiesterase; Pr 75.2 80 0.0017 33.4 14.1 16 116-131 153-168 (520)
188 KOG4673 Transcription factor T 75.2 25 0.00054 39.1 10.5 38 44-81 496-533 (961)
189 PF05278 PEARLI-4: Arabidopsis 75.1 22 0.00048 34.9 9.3 85 20-109 169-262 (269)
190 KOG4643 Uncharacterized coiled 74.8 21 0.00046 40.9 10.1 59 38-100 172-230 (1195)
191 PF04102 SlyX: SlyX; InterPro 74.7 21 0.00046 27.6 7.5 31 100-130 22-52 (69)
192 TIGR03319 YmdA_YtgF conserved 74.7 83 0.0018 33.2 14.0 16 116-131 147-162 (514)
193 TIGR01010 BexC_CtrB_KpsE polys 74.6 21 0.00046 34.9 9.2 84 40-130 211-305 (362)
194 PRK04778 septation ring format 74.6 38 0.00083 35.7 11.6 70 62-131 280-376 (569)
195 PRK10803 tol-pal system protei 74.0 25 0.00054 33.6 9.3 63 49-115 39-101 (263)
196 PF14932 HAUS-augmin3: HAUS au 73.9 54 0.0012 31.2 11.5 38 43-80 68-105 (256)
197 PF04102 SlyX: SlyX; InterPro 73.8 22 0.00047 27.6 7.3 30 86-115 15-44 (69)
198 PF10174 Cast: RIM-binding pro 73.8 50 0.0011 36.8 12.6 66 41-106 334-409 (775)
199 PRK13729 conjugal transfer pil 73.6 14 0.0003 38.9 8.0 18 59-76 71-88 (475)
200 PRK02793 phi X174 lysis protei 73.4 22 0.00048 28.0 7.3 29 101-129 27-55 (72)
201 PF06698 DUF1192: Protein of u 72.8 6.6 0.00014 30.4 4.1 27 41-67 26-52 (59)
202 PF10211 Ax_dynein_light: Axon 72.8 78 0.0017 29.0 12.0 14 86-99 145-158 (189)
203 COG5493 Uncharacterized conser 72.8 75 0.0016 30.5 11.8 60 13-81 2-63 (231)
204 PF04977 DivIC: Septum formati 72.7 18 0.0004 27.2 6.6 35 86-120 28-62 (80)
205 PF15035 Rootletin: Ciliary ro 72.6 38 0.00083 31.1 9.8 40 76-116 62-108 (182)
206 PF04977 DivIC: Septum formati 72.6 17 0.00037 27.4 6.4 29 46-74 20-48 (80)
207 PRK04863 mukB cell division pr 72.5 49 0.0011 39.4 12.8 50 263-314 487-547 (1486)
208 PRK12705 hypothetical protein; 72.3 51 0.0011 35.0 11.8 72 60-131 73-156 (508)
209 PF13747 DUF4164: Domain of un 72.3 43 0.00093 27.5 9.0 25 82-106 53-77 (89)
210 PRK00888 ftsB cell division pr 72.3 18 0.00039 30.4 7.0 38 86-123 38-75 (105)
211 PF10146 zf-C4H2: Zinc finger- 72.3 93 0.002 29.7 13.1 64 53-117 4-67 (230)
212 PF07106 TBPIP: Tat binding pr 72.2 14 0.00031 32.5 6.8 63 46-110 75-137 (169)
213 PRK10803 tol-pal system protei 72.1 18 0.00039 34.6 7.8 61 40-100 37-100 (263)
214 PF08647 BRE1: BRE1 E3 ubiquit 72.0 54 0.0012 26.9 9.8 34 47-80 28-61 (96)
215 PF09730 BicD: Microtubule-ass 72.0 51 0.0011 36.5 12.1 80 40-119 31-127 (717)
216 PF08898 DUF1843: Domain of un 71.9 13 0.00028 28.5 5.4 36 82-117 17-52 (53)
217 PRK01156 chromosome segregatio 71.9 49 0.0011 36.2 12.0 22 91-112 697-718 (895)
218 COG2919 Septum formation initi 71.9 61 0.0013 27.5 10.9 40 86-125 61-100 (117)
219 KOG4687 Uncharacterized coiled 71.8 17 0.00037 36.4 7.8 80 50-129 30-116 (389)
220 COG4026 Uncharacterized protei 71.7 33 0.00072 33.5 9.4 75 41-119 140-214 (290)
221 PF15070 GOLGA2L5: Putative go 71.6 24 0.00053 38.1 9.5 58 54-115 5-62 (617)
222 COG1842 PspA Phage shock prote 71.3 96 0.0021 29.5 14.2 35 92-126 102-143 (225)
223 PF08700 Vps51: Vps51/Vps67; 71.3 46 0.00099 25.7 9.8 51 61-115 34-84 (87)
224 KOG4674 Uncharacterized conser 71.2 46 0.00099 40.4 12.1 42 82-123 738-779 (1822)
225 COG3524 KpsE Capsule polysacch 70.9 53 0.0012 33.4 10.9 88 25-122 213-323 (372)
226 TIGR00020 prfB peptide chain r 70.8 67 0.0015 32.7 11.9 86 31-116 11-112 (364)
227 cd00176 SPEC Spectrin repeats, 70.8 39 0.00084 28.4 8.8 40 40-79 76-115 (213)
228 KOG0406 Glutathione S-transfer 70.7 18 0.00039 34.7 7.4 57 19-81 87-146 (231)
229 PF07200 Mod_r: Modifier of ru 70.6 68 0.0015 27.5 11.7 44 38-81 43-86 (150)
230 KOG3650 Predicted coiled-coil 70.4 21 0.00046 30.8 7.0 29 82-110 77-105 (120)
231 COG3883 Uncharacterized protei 70.1 37 0.00081 33.3 9.6 57 59-115 33-92 (265)
232 KOG2991 Splicing regulator [RN 70.1 26 0.00056 34.8 8.5 71 36-106 229-309 (330)
233 KOG1962 B-cell receptor-associ 69.9 38 0.00083 32.3 9.4 56 46-105 154-209 (216)
234 PRK04406 hypothetical protein; 69.9 33 0.00072 27.4 7.7 52 66-128 6-57 (75)
235 KOG4643 Uncharacterized coiled 69.9 46 0.00099 38.4 11.2 77 45-121 504-593 (1195)
236 PRK02793 phi X174 lysis protei 69.6 23 0.00051 27.9 6.7 19 92-110 32-50 (72)
237 PRK01156 chromosome segregatio 69.6 73 0.0016 34.9 12.7 7 307-313 874-880 (895)
238 KOG1853 LIS1-interacting prote 69.6 43 0.00093 33.3 9.8 64 45-108 93-169 (333)
239 PRK00286 xseA exodeoxyribonucl 69.5 99 0.0021 31.2 12.8 54 28-81 267-322 (438)
240 TIGR01000 bacteriocin_acc bact 69.5 1E+02 0.0022 31.3 13.0 39 40-78 162-200 (457)
241 PRK00106 hypothetical protein; 69.1 1.3E+02 0.0029 32.2 14.1 16 116-131 168-183 (535)
242 PF05529 Bap31: B-cell recepto 69.0 45 0.00098 29.9 9.3 69 41-122 116-184 (192)
243 TIGR02132 phaR_Bmeg polyhydrox 68.9 55 0.0012 30.8 9.9 58 40-97 76-146 (189)
244 PF14282 FlxA: FlxA-like prote 68.4 28 0.00061 29.1 7.4 59 63-122 18-77 (106)
245 KOG0996 Structural maintenance 68.3 51 0.0011 38.5 11.3 81 21-101 772-877 (1293)
246 PF04849 HAP1_N: HAP1 N-termin 68.2 1E+02 0.0022 30.9 12.3 84 32-115 156-253 (306)
247 PRK13169 DNA replication intia 68.2 40 0.00086 29.0 8.3 23 86-108 33-55 (110)
248 PF12777 MT: Microtubule-bindi 68.1 48 0.001 32.7 10.0 25 86-110 253-277 (344)
249 PF04100 Vps53_N: Vps53-like, 68.0 36 0.00079 34.4 9.4 26 102-127 84-109 (383)
250 TIGR02680 conserved hypothetic 67.8 1E+02 0.0022 36.3 13.9 63 43-105 882-951 (1353)
251 PF13374 TPR_10: Tetratricopep 67.6 2.7 5.9E-05 27.1 0.9 39 281-319 4-42 (42)
252 PRK10869 recombination and rep 67.6 26 0.00057 36.9 8.6 54 24-77 137-198 (553)
253 TIGR03752 conj_TIGR03752 integ 67.4 58 0.0013 34.4 10.9 32 47-78 63-94 (472)
254 PRK00409 recombination and DNA 67.3 1E+02 0.0022 34.2 13.2 51 30-81 504-554 (782)
255 PF05008 V-SNARE: Vesicle tran 67.2 53 0.0011 25.2 8.2 53 60-116 21-74 (79)
256 PF06657 Cep57_MT_bd: Centroso 66.9 32 0.00069 27.6 7.1 64 39-109 13-77 (79)
257 PLN03188 kinesin-12 family pro 66.9 68 0.0015 37.8 12.0 83 39-125 1158-1255(1320)
258 COG0419 SbcC ATPase involved i 66.7 49 0.0011 36.7 10.8 77 50-129 481-560 (908)
259 PRK00578 prfB peptide chain re 66.6 1.1E+02 0.0024 31.2 12.5 90 32-123 12-117 (367)
260 smart00502 BBC B-Box C-termina 66.6 64 0.0014 25.6 13.1 27 101-127 77-103 (127)
261 KOG4673 Transcription factor T 66.2 49 0.0011 36.9 10.3 20 57-76 446-465 (961)
262 PF09304 Cortex-I_coil: Cortex 66.2 43 0.00093 28.9 8.0 57 68-128 13-69 (107)
263 KOG0241 Kinesin-like protein [ 65.8 32 0.0007 39.7 9.1 51 31-81 346-403 (1714)
264 PF02388 FemAB: FemAB family; 65.8 38 0.00082 34.2 9.0 55 64-119 242-296 (406)
265 PF10226 DUF2216: Uncharacteri 65.7 1.1E+02 0.0024 29.0 11.2 52 52-103 22-76 (195)
266 PRK00295 hypothetical protein; 65.7 50 0.0011 25.8 7.8 29 101-129 24-52 (68)
267 PF13747 DUF4164: Domain of un 65.3 75 0.0016 26.0 10.2 29 92-120 42-70 (89)
268 PF02841 GBP_C: Guanylate-bind 65.1 77 0.0017 30.5 10.6 71 48-121 188-258 (297)
269 PF14193 DUF4315: Domain of un 65.1 58 0.0013 26.7 8.3 61 44-124 2-62 (83)
270 PRK04406 hypothetical protein; 65.0 48 0.001 26.5 7.7 42 64-109 11-52 (75)
271 COG1570 XseA Exonuclease VII, 65.0 1.3E+02 0.0028 31.7 12.7 72 10-81 236-323 (440)
272 smart00338 BRLZ basic region l 65.0 26 0.00057 26.3 6.0 25 92-116 36-60 (65)
273 smart00338 BRLZ basic region l 64.7 52 0.0011 24.7 7.5 38 61-102 23-60 (65)
274 PF06637 PV-1: PV-1 protein (P 64.7 67 0.0015 33.5 10.4 52 30-81 265-316 (442)
275 KOG0978 E3 ubiquitin ligase in 64.6 1.4E+02 0.003 33.2 13.4 112 14-125 378-518 (698)
276 PRK10807 paraquat-inducible pr 64.6 1.3E+02 0.0028 32.0 13.0 94 20-115 406-516 (547)
277 COG5374 Uncharacterized conser 64.5 15 0.00033 34.4 5.4 36 45-80 138-173 (192)
278 PF13514 AAA_27: AAA domain 64.5 60 0.0013 36.9 11.1 89 32-121 114-213 (1111)
279 PF09787 Golgin_A5: Golgin sub 64.4 38 0.00083 35.3 9.0 23 40-62 113-135 (511)
280 PRK04778 septation ring format 64.4 61 0.0013 34.2 10.5 26 86-111 387-412 (569)
281 PF06476 DUF1090: Protein of u 64.4 40 0.00087 28.9 7.7 51 28-81 31-87 (115)
282 PF13094 CENP-Q: CENP-Q, a CEN 64.1 90 0.0019 27.3 10.0 74 45-129 22-95 (160)
283 KOG1853 LIS1-interacting prote 64.1 71 0.0015 31.8 10.1 45 86-130 95-139 (333)
284 PF12240 Angiomotin_C: Angiomo 64.1 11 0.00024 35.7 4.6 31 42-72 135-165 (205)
285 PF06156 DUF972: Protein of un 63.8 44 0.00095 28.4 7.7 47 71-117 8-57 (107)
286 COG1777 Predicted transcriptio 63.6 47 0.001 31.8 8.6 70 52-123 120-192 (217)
287 PF04582 Reo_sigmaC: Reovirus 63.4 16 0.00035 36.7 5.8 27 90-116 127-153 (326)
288 TIGR00237 xseA exodeoxyribonuc 63.2 1.5E+02 0.0034 30.3 12.9 53 29-81 263-317 (432)
289 PF05769 DUF837: Protein of un 63.1 1.2E+02 0.0027 27.8 11.9 38 89-126 70-108 (181)
290 PF07926 TPR_MLP1_2: TPR/MLP1/ 63.1 97 0.0021 26.5 10.2 31 43-73 17-47 (132)
291 PRK04325 hypothetical protein; 63.0 49 0.0011 26.2 7.4 39 66-108 11-49 (74)
292 PF11488 Lge1: Transcriptional 63.0 63 0.0014 25.7 8.1 30 52-81 25-54 (80)
293 KOG3119 Basic region leucine z 62.9 32 0.00069 33.2 7.6 93 35-127 164-260 (269)
294 PRK12704 phosphodiesterase; Pr 62.8 2.1E+02 0.0045 30.4 14.0 8 270-277 285-292 (520)
295 PF13864 Enkurin: Calmodulin-b 62.7 17 0.00038 29.7 5.0 56 60-117 40-95 (98)
296 PF05010 TACC: Transforming ac 62.5 90 0.0019 29.5 10.2 63 49-111 22-91 (207)
297 PRK13729 conjugal transfer pil 62.4 29 0.00064 36.6 7.6 16 65-80 70-85 (475)
298 PF02994 Transposase_22: L1 tr 62.2 18 0.00038 36.4 5.9 68 41-108 103-170 (370)
299 PF06103 DUF948: Bacterial pro 62.1 78 0.0017 25.0 12.4 80 36-115 5-87 (90)
300 PRK11448 hsdR type I restricti 62.0 59 0.0013 37.6 10.5 67 48-118 147-213 (1123)
301 KOG0996 Structural maintenance 61.7 58 0.0013 38.1 10.2 32 45-76 780-811 (1293)
302 COG3879 Uncharacterized protei 61.6 42 0.00092 32.7 8.1 18 92-109 67-84 (247)
303 KOG0980 Actin-binding protein 61.6 84 0.0018 35.8 11.2 21 269-298 691-711 (980)
304 PRK00888 ftsB cell division pr 61.6 37 0.0008 28.5 6.8 30 86-115 31-60 (105)
305 PF05622 HOOK: HOOK protein; 61.2 2.7 5.9E-05 45.1 0.0 89 42-131 238-342 (713)
306 PF06246 Isy1: Isy1-like splic 61.2 35 0.00075 33.1 7.5 59 51-109 38-98 (255)
307 PF05667 DUF812: Protein of un 61.2 94 0.002 33.6 11.3 87 41-127 340-429 (594)
308 PRK13169 DNA replication intia 61.1 49 0.0011 28.4 7.5 48 69-116 6-56 (110)
309 KOG0249 LAR-interacting protei 61.0 31 0.00068 38.4 7.8 59 43-101 91-151 (916)
310 PRK00591 prfA peptide chain re 60.9 1E+02 0.0023 31.3 11.1 90 41-130 4-110 (359)
311 PRK00736 hypothetical protein; 60.9 62 0.0013 25.3 7.5 15 66-80 7-21 (68)
312 TIGR02894 DNA_bind_RsfA transc 60.8 34 0.00073 31.4 6.9 30 86-115 101-130 (161)
313 PF11802 CENP-K: Centromere-as 60.7 1.8E+02 0.0039 28.8 12.6 29 105-133 156-184 (268)
314 TIGR02231 conserved hypothetic 60.6 1.1E+02 0.0024 31.6 11.5 37 82-118 138-174 (525)
315 TIGR01069 mutS2 MutS2 family p 60.2 1.7E+02 0.0037 32.5 13.3 50 30-80 499-548 (771)
316 PF10226 DUF2216: Uncharacteri 60.2 28 0.00061 32.8 6.4 50 82-132 23-73 (195)
317 TIGR03319 YmdA_YtgF conserved 60.0 2.4E+02 0.0051 29.9 14.0 7 271-277 280-286 (514)
318 PF06548 Kinesin-related: Kine 60.0 1.5E+02 0.0031 31.6 12.0 14 68-81 431-444 (488)
319 PRK00846 hypothetical protein; 59.9 52 0.0011 26.7 7.1 30 101-130 32-61 (77)
320 TIGR00618 sbcc exonuclease Sbc 59.9 2E+02 0.0043 32.6 14.0 31 22-52 173-203 (1042)
321 PF03961 DUF342: Protein of un 59.9 86 0.0019 32.0 10.4 29 100-128 379-407 (451)
322 PF01576 Myosin_tail_1: Myosin 59.8 3 6.4E-05 46.2 0.0 91 39-129 260-361 (859)
323 PF11285 DUF3086: Protein of u 59.8 22 0.00048 35.0 5.9 58 65-129 5-63 (283)
324 PF14661 HAUS6_N: HAUS augmin- 59.6 1.6E+02 0.0034 27.8 11.5 57 25-81 139-195 (247)
325 KOG0976 Rho/Rac1-interacting s 59.6 62 0.0013 36.9 9.7 73 46-118 326-408 (1265)
326 PF09787 Golgin_A5: Golgin sub 59.3 24 0.00052 36.7 6.5 72 37-112 356-429 (511)
327 PF04949 Transcrip_act: Transc 59.0 1.5E+02 0.0032 27.3 11.1 84 30-113 43-143 (159)
328 COG3883 Uncharacterized protei 58.8 1E+02 0.0023 30.3 10.3 60 47-106 35-97 (265)
329 PF02183 HALZ: Homeobox associ 58.7 44 0.00095 24.4 5.9 26 86-111 16-41 (45)
330 PF10234 Cluap1: Clusterin-ass 58.5 1.1E+02 0.0025 30.0 10.5 67 48-114 142-208 (267)
331 KOG2417 Predicted G-protein co 58.5 31 0.00068 35.7 6.9 30 99-128 245-274 (462)
332 KOG0614 cGMP-dependent protein 58.2 34 0.00073 37.2 7.3 46 36-81 17-62 (732)
333 COG4372 Uncharacterized protei 58.1 1E+02 0.0022 32.5 10.4 12 106-117 269-280 (499)
334 KOG3859 Septins (P-loop GTPase 58.0 57 0.0012 33.2 8.5 31 87-117 375-405 (406)
335 PF11570 E2R135: Coiled-coil r 58.0 47 0.001 29.7 7.1 52 45-96 3-54 (136)
336 PF11500 Cut12: Spindle pole b 57.5 16 0.00035 33.1 4.2 38 49-86 104-141 (152)
337 PF12761 End3: Actin cytoskele 57.4 1.7E+02 0.0038 27.6 11.1 27 49-75 95-121 (195)
338 PF14193 DUF4315: Domain of un 57.3 49 0.0011 27.1 6.6 10 68-77 26-35 (83)
339 TIGR00019 prfA peptide chain r 57.1 1.6E+02 0.0035 30.0 11.7 30 100-129 79-109 (360)
340 KOG0963 Transcription factor/C 57.0 88 0.0019 34.2 10.2 77 51-127 279-360 (629)
341 PF04899 MbeD_MobD: MbeD/MobD 57.0 99 0.0021 24.6 8.3 51 30-80 8-58 (70)
342 PF13166 AAA_13: AAA domain 57.0 2.6E+02 0.0056 29.7 13.7 29 302-333 657-685 (712)
343 TIGR01554 major_cap_HK97 phage 57.0 61 0.0013 32.0 8.5 8 115-122 86-93 (378)
344 PF03961 DUF342: Protein of un 56.9 49 0.0011 33.7 8.1 35 88-122 374-408 (451)
345 PF07111 HCR: Alpha helical co 56.6 1.7E+02 0.0036 32.8 12.2 47 27-81 541-588 (739)
346 KOG4074 Leucine zipper nuclear 56.6 1E+02 0.0023 31.3 10.0 67 42-108 136-203 (383)
347 PF10205 KLRAQ: Predicted coil 56.5 57 0.0012 27.9 7.1 48 52-103 28-75 (102)
348 KOG0999 Microtubule-associated 56.5 75 0.0016 34.8 9.5 79 41-119 105-200 (772)
349 PF07798 DUF1640: Protein of u 56.3 1.5E+02 0.0033 26.5 12.4 11 50-60 58-68 (177)
350 PF10481 CENP-F_N: Cenp-F N-te 56.2 62 0.0013 32.3 8.3 64 43-113 18-91 (307)
351 PF04859 DUF641: Plant protein 56.1 38 0.00081 30.0 6.2 31 47-77 77-107 (131)
352 PF07798 DUF1640: Protein of u 56.1 1.5E+02 0.0033 26.5 12.7 17 65-81 52-68 (177)
353 PF13815 Dzip-like_N: Iguana/D 56.0 39 0.00085 28.5 6.1 29 83-111 88-116 (118)
354 PF11855 DUF3375: Protein of u 55.9 82 0.0018 32.7 9.6 94 38-132 117-218 (478)
355 PF06730 FAM92: FAM92 protein; 55.9 46 0.001 31.9 7.2 74 56-129 3-94 (219)
356 KOG0517 Beta-spectrin [Cytoske 55.7 1.5E+02 0.0033 36.7 12.4 103 32-138 939-1058(2473)
357 KOG2629 Peroxisomal membrane a 55.7 91 0.002 31.2 9.4 64 47-117 119-182 (300)
358 KOG0612 Rho-associated, coiled 55.5 1.1E+02 0.0024 36.0 11.1 46 86-131 620-665 (1317)
359 TIGR00293 prefoldin, archaeal 55.0 1.2E+02 0.0027 25.2 11.1 39 89-127 86-124 (126)
360 KOG3863 bZIP transcription fac 55.0 33 0.00071 37.2 6.7 45 86-133 522-566 (604)
361 PF13935 Ead_Ea22: Ead/Ea22-li 54.9 1.2E+02 0.0026 26.4 9.1 71 42-116 66-139 (139)
362 PF05308 Mito_fiss_reg: Mitoch 54.8 12 0.00025 36.3 3.1 24 37-60 116-139 (253)
363 KOG0933 Structural maintenance 54.7 1.3E+02 0.0028 35.0 11.3 57 25-81 712-779 (1174)
364 PRK04325 hypothetical protein; 54.6 86 0.0019 24.8 7.5 54 66-130 4-57 (74)
365 PF05761 5_nucleotid: 5' nucle 54.6 40 0.00086 35.1 7.1 36 45-81 324-359 (448)
366 PF02050 FliJ: Flagellar FliJ 54.5 1E+02 0.0022 24.0 10.3 69 48-116 3-72 (123)
367 PRK09841 cryptic autophosphory 54.3 1.9E+02 0.0041 31.5 12.4 29 45-73 269-297 (726)
368 cd07638 BAR_ACAP2 The Bin/Amph 54.2 1.3E+02 0.0029 28.1 9.9 81 44-128 3-86 (200)
369 KOG0971 Microtubule-associated 54.1 77 0.0017 36.5 9.4 39 86-127 476-514 (1243)
370 PF09432 THP2: Tho complex sub 54.0 1.5E+02 0.0033 26.5 9.5 71 48-122 50-130 (132)
371 PRK06975 bifunctional uroporph 54.0 1.9E+02 0.0041 31.4 12.2 85 44-131 347-439 (656)
372 KOG0972 Huntingtin interacting 53.9 55 0.0012 33.2 7.6 59 41-99 264-325 (384)
373 PF09728 Taxilin: Myosin-like 53.9 1.2E+02 0.0027 29.9 10.1 69 40-109 26-98 (309)
374 PF04871 Uso1_p115_C: Uso1 / p 53.8 1.5E+02 0.0033 25.9 10.7 70 42-115 33-103 (136)
375 PF07794 DUF1633: Protein of u 53.7 1.2E+02 0.0026 32.9 10.4 89 38-126 592-704 (790)
376 KOG2896 UV radiation resistanc 53.6 2.8E+02 0.006 28.8 12.8 28 43-70 80-107 (377)
377 TIGR03545 conserved hypothetic 53.5 74 0.0016 34.0 9.0 49 63-111 190-241 (555)
378 PRK15178 Vi polysaccharide exp 53.3 2.5E+02 0.0054 29.5 12.5 45 37-81 280-331 (434)
379 PF06120 Phage_HK97_TLTM: Tail 53.1 91 0.002 31.1 9.0 80 41-123 72-172 (301)
380 PF09302 XLF: XLF (XRCC4-like 53.1 18 0.00039 31.7 3.8 43 31-74 128-170 (171)
381 PF05557 MAD: Mitotic checkpoi 53.0 52 0.0011 35.6 7.9 10 283-292 704-713 (722)
382 PF05859 Mis12: Mis12 protein; 53.0 11 0.00024 32.8 2.4 55 11-70 86-142 (144)
383 PF03938 OmpH: Outer membrane 52.9 96 0.0021 26.5 8.1 46 30-75 22-68 (158)
384 PF13874 Nup54: Nucleoporin co 52.9 90 0.0019 27.1 8.0 33 40-72 34-66 (141)
385 PF04582 Reo_sigmaC: Reovirus 52.8 12 0.00027 37.6 3.0 87 42-128 55-151 (326)
386 KOG2218 ER to golgi transport 52.8 34 0.00073 37.9 6.4 91 40-131 29-133 (737)
387 PF03938 OmpH: Outer membrane 52.8 1.2E+02 0.0025 25.9 8.6 12 66-77 52-63 (158)
388 PF00170 bZIP_1: bZIP transcri 52.7 96 0.0021 23.2 8.8 31 86-116 30-60 (64)
389 PRK09737 EcoKI restriction-mod 52.7 30 0.00065 33.9 5.6 41 88-128 372-416 (461)
390 PF09311 Rab5-bind: Rabaptin-l 52.7 12 0.00025 33.9 2.6 70 35-108 7-76 (181)
391 PF12128 DUF3584: Protein of u 52.6 4.3E+02 0.0093 30.7 15.4 47 82-128 490-536 (1201)
392 PF06818 Fez1: Fez1; InterPro 52.3 1.4E+02 0.0031 28.2 9.8 66 51-116 11-93 (202)
393 KOG0979 Structural maintenance 52.2 1.3E+02 0.0028 34.8 10.9 74 42-119 628-701 (1072)
394 PRK00846 hypothetical protein; 52.2 87 0.0019 25.4 7.2 6 114-119 56-61 (77)
395 PF14257 DUF4349: Domain of un 52.2 53 0.0012 30.8 7.0 15 44-58 140-154 (262)
396 PF07926 TPR_MLP1_2: TPR/MLP1/ 51.9 1.5E+02 0.0033 25.3 12.1 34 43-76 3-36 (132)
397 PRK00295 hypothetical protein; 51.8 73 0.0016 24.8 6.6 41 66-110 7-47 (68)
398 cd07601 BAR_APPL The Bin/Amphi 51.8 1.3E+02 0.0029 28.4 9.5 80 43-129 2-91 (215)
399 PF05266 DUF724: Protein of un 51.8 2E+02 0.0044 26.6 11.3 25 90-114 125-149 (190)
400 KOG1899 LAR transmembrane tyro 51.7 3.9E+02 0.0085 30.0 17.4 84 40-123 228-318 (861)
401 PHA03185 UL14 tegument protein 51.7 92 0.002 29.8 8.3 59 28-89 53-111 (214)
402 PRK00736 hypothetical protein; 51.6 62 0.0013 25.2 6.2 12 69-80 3-14 (68)
403 PF06705 SF-assemblin: SF-asse 51.6 2.1E+02 0.0046 26.8 11.2 74 40-117 89-164 (247)
404 PF03148 Tektin: Tektin family 51.6 2.6E+02 0.0057 28.2 12.2 84 29-117 202-286 (384)
405 PF11221 Med21: Subunit 21 of 51.6 1.7E+02 0.0036 25.6 9.8 79 26-113 63-142 (144)
406 PF14362 DUF4407: Domain of un 51.3 2.3E+02 0.0049 27.1 13.7 63 19-81 93-159 (301)
407 PF14915 CCDC144C: CCDC144C pr 51.1 2.4E+02 0.0051 28.5 11.4 78 39-116 217-298 (305)
408 COG1340 Uncharacterized archae 51.1 1.5E+02 0.0032 29.7 10.0 65 47-115 31-95 (294)
409 COG3937 Uncharacterized conser 50.9 59 0.0013 28.2 6.4 55 63-117 49-104 (108)
410 PRK08476 F0F1 ATP synthase sub 50.7 1.3E+02 0.0028 26.1 8.7 13 93-105 122-134 (141)
411 KOG0612 Rho-associated, coiled 50.6 1.8E+02 0.0038 34.5 11.7 40 265-310 617-656 (1317)
412 COG3074 Uncharacterized protei 50.6 1.4E+02 0.003 24.4 8.0 17 65-81 26-42 (79)
413 PF10234 Cluap1: Clusterin-ass 50.5 92 0.002 30.6 8.4 25 83-107 170-194 (267)
414 KOG0978 E3 ubiquitin ligase in 50.4 1.7E+02 0.0036 32.6 11.1 80 40-122 535-617 (698)
415 KOG4593 Mitotic checkpoint pro 50.4 1.9E+02 0.0042 32.2 11.5 76 45-125 188-263 (716)
416 PF10046 BLOC1_2: Biogenesis o 50.2 1.4E+02 0.0031 24.5 9.9 37 40-76 32-68 (99)
417 KOG0239 Kinesin (KAR3 subfamil 50.2 1.5E+02 0.0032 32.6 10.8 65 66-130 243-313 (670)
418 PF06320 GCN5L1: GCN5-like pro 50.0 1.7E+02 0.0037 25.2 10.9 52 75-126 33-84 (121)
419 TIGR00012 L29 ribosomal protei 49.9 35 0.00077 25.4 4.4 47 66-120 7-54 (55)
420 PF07111 HCR: Alpha helical co 49.9 1.2E+02 0.0027 33.7 10.0 84 30-113 156-259 (739)
421 KOG2391 Vacuolar sorting prote 49.9 1.7E+02 0.0036 30.2 10.3 71 44-121 208-278 (365)
422 PF13805 Pil1: Eisosome compon 49.8 2.3E+02 0.0049 28.1 11.0 40 42-81 102-141 (271)
423 KOG0018 Structural maintenance 49.7 1E+02 0.0023 35.8 9.7 78 53-130 265-351 (1141)
424 PF15272 BBP1_C: Spindle pole 49.5 1.1E+02 0.0024 28.9 8.5 19 60-78 103-121 (196)
425 KOG0837 Transcriptional activa 49.4 96 0.0021 30.8 8.3 42 83-127 228-269 (279)
426 PRK02119 hypothetical protein; 49.4 1.2E+02 0.0026 24.0 7.5 25 86-110 27-51 (73)
427 cd00632 Prefoldin_beta Prefold 49.2 51 0.0011 27.0 5.6 17 61-77 60-76 (105)
428 PF04363 DUF496: Protein of un 49.2 1.3E+02 0.0028 25.5 7.9 56 53-108 15-93 (95)
429 CHL00154 rpl29 ribosomal prote 49.2 53 0.0011 25.8 5.4 49 65-121 13-62 (67)
430 PF12808 Mto2_bdg: Micro-tubul 49.1 14 0.00031 27.9 2.1 28 33-60 19-46 (52)
431 KOG1510 RNA polymerase II holo 49.0 1.6E+02 0.0034 26.7 8.9 59 11-74 39-101 (139)
432 PRK08032 fliD flagellar cappin 49.0 1.7E+02 0.0036 30.3 10.5 51 54-104 410-460 (462)
433 TIGR01069 mutS2 MutS2 family p 49.0 1.7E+02 0.0036 32.5 11.1 8 12-19 492-499 (771)
434 PF15254 CCDC14: Coiled-coil d 48.7 1.1E+02 0.0024 34.4 9.5 74 37-112 383-478 (861)
435 TIGR02977 phageshock_pspA phag 48.7 2.2E+02 0.0049 26.3 14.3 29 88-116 98-126 (219)
436 TIGR02449 conserved hypothetic 48.6 66 0.0014 25.4 5.9 26 86-111 11-36 (65)
437 PF04340 DUF484: Protein of un 48.3 1E+02 0.0022 28.3 8.1 43 90-132 65-110 (225)
438 PF14992 TMCO5: TMCO5 family 48.3 1.1E+02 0.0024 30.3 8.7 79 45-123 65-171 (280)
439 PF05701 WEMBL: Weak chloropla 48.2 2.3E+02 0.005 29.8 11.5 41 41-81 279-319 (522)
440 PF05600 DUF773: Protein of un 48.0 1.2E+02 0.0025 32.2 9.3 59 52-114 434-492 (507)
441 PF10458 Val_tRNA-synt_C: Valy 47.8 1E+02 0.0022 23.5 6.7 27 48-74 2-28 (66)
442 PRK13922 rod shape-determining 47.8 2.5E+02 0.0054 26.5 12.4 39 83-121 70-108 (276)
443 KOG0243 Kinesin-like protein [ 47.8 2.7E+02 0.0059 32.4 12.5 79 21-107 430-515 (1041)
444 KOG1029 Endocytic adaptor prot 47.7 2.3E+02 0.005 32.4 11.7 34 91-124 558-591 (1118)
445 PF07246 Phlebovirus_NSM: Phle 47.7 1.3E+02 0.0029 29.6 9.0 26 56-81 160-185 (264)
446 PF14073 Cep57_CLD: Centrosome 47.6 2.4E+02 0.0052 26.3 11.5 26 28-53 78-103 (178)
447 PHA00489 scaffolding protein 47.6 74 0.0016 27.0 6.3 49 60-112 23-71 (101)
448 KOG4196 bZIP transcription fac 47.4 1.7E+02 0.0037 26.3 8.9 66 53-119 35-104 (135)
449 PF12998 ING: Inhibitor of gro 47.0 1.4E+02 0.0031 23.6 10.5 71 45-115 10-98 (105)
450 PF13166 AAA_13: AAA domain 47.0 3.1E+02 0.0067 29.1 12.3 10 286-295 617-626 (712)
451 PRK11519 tyrosine kinase; Prov 46.9 2.6E+02 0.0056 30.4 12.0 28 104-131 371-398 (719)
452 PF11418 Scaffolding_pro: Phi2 46.8 1.5E+02 0.0032 25.1 7.9 49 60-112 22-70 (97)
453 PF15272 BBP1_C: Spindle pole 46.3 1.9E+02 0.0041 27.4 9.5 48 62-109 80-127 (196)
454 PF04859 DUF641: Plant protein 46.2 55 0.0012 29.0 5.7 31 46-76 90-120 (131)
455 PF12072 DUF3552: Domain of un 46.2 2.4E+02 0.0052 25.9 14.5 21 61-81 75-95 (201)
456 PF02996 Prefoldin: Prefoldin 46.2 46 0.00099 27.2 4.9 64 12-77 55-118 (120)
457 TIGR02977 phageshock_pspA phag 46.2 2.5E+02 0.0053 26.0 11.1 42 85-126 88-129 (219)
458 PRK10869 recombination and rep 46.0 1.1E+02 0.0023 32.5 8.7 50 82-131 334-388 (553)
459 PF07956 DUF1690: Protein of U 46.0 1.5E+02 0.0033 26.3 8.5 42 11-52 7-51 (142)
460 PF12004 DUF3498: Domain of un 45.5 7 0.00015 41.2 0.0 58 43-100 369-433 (495)
461 KOG0964 Structural maintenance 45.5 1.8E+02 0.0039 33.9 10.6 70 42-115 410-479 (1200)
462 KOG0964 Structural maintenance 45.3 1.9E+02 0.0042 33.6 10.8 101 27-127 213-331 (1200)
463 PF05335 DUF745: Protein of un 45.1 1.3E+02 0.0029 27.9 8.3 49 42-94 122-170 (188)
464 KOG2129 Uncharacterized conser 45.1 1.4E+02 0.003 31.8 9.1 36 89-127 190-225 (552)
465 PHA03332 membrane glycoprotein 45.0 3E+02 0.0066 32.4 12.3 55 43-97 905-963 (1328)
466 PTZ00419 valyl-tRNA synthetase 45.0 56 0.0012 36.9 6.8 27 48-74 927-953 (995)
467 PF07989 Microtub_assoc: Micro 45.0 1.6E+02 0.0034 23.5 9.2 52 65-116 15-70 (75)
468 PF10392 COG5: Golgi transport 45.0 1.4E+02 0.0031 25.5 8.0 43 39-81 75-117 (132)
469 PF00523 Fusion_gly: Fusion gl 44.9 2.3E+02 0.005 30.2 10.9 74 33-116 105-178 (490)
470 PF02403 Seryl_tRNA_N: Seryl-t 44.9 1.7E+02 0.0036 23.7 8.4 26 92-117 70-95 (108)
471 PRK00106 hypothetical protein; 44.8 4.3E+02 0.0093 28.4 14.0 37 92-128 125-161 (535)
472 cd08915 V_Alix_like Protein-in 44.8 2.5E+02 0.0054 27.4 10.5 106 15-128 170-302 (342)
473 PF10267 Tmemb_cc2: Predicted 44.6 3.8E+02 0.0083 27.8 12.3 89 39-129 222-329 (395)
474 COG3206 GumC Uncharacterized p 44.5 2.2E+02 0.0047 29.0 10.4 29 104-132 374-402 (458)
475 PF07544 Med9: RNA polymerase 44.4 40 0.00087 27.0 4.2 13 48-60 26-38 (83)
476 PRK05423 hypothetical protein; 44.4 1.3E+02 0.0029 25.7 7.4 56 53-108 22-100 (104)
477 PF12128 DUF3584: Protein of u 44.1 5.1E+02 0.011 30.1 14.3 39 43-81 621-659 (1201)
478 PF14662 CCDC155: Coiled-coil 43.4 2.9E+02 0.0064 26.1 12.6 23 93-115 78-100 (193)
479 PF09728 Taxilin: Myosin-like 42.8 3.5E+02 0.0075 26.8 12.8 31 284-314 203-240 (309)
480 PRK09841 cryptic autophosphory 42.7 1.9E+02 0.004 31.5 10.1 32 101-132 368-399 (726)
481 cd07639 BAR_ACAP1 The Bin/Amph 42.6 1.8E+02 0.0038 27.4 8.7 81 44-128 3-86 (200)
482 PF03999 MAP65_ASE1: Microtubu 42.5 8.2 0.00018 41.0 0.0 81 45-129 209-290 (619)
483 PF10805 DUF2730: Protein of u 42.4 2E+02 0.0044 24.0 11.1 18 94-111 77-94 (106)
484 PF14282 FlxA: FlxA-like prote 42.4 1.3E+02 0.0028 25.1 7.1 42 40-81 23-68 (106)
485 KOG4343 bZIP transcription fac 42.3 79 0.0017 34.3 7.0 27 82-108 309-335 (655)
486 PF11365 DUF3166: Protein of u 42.3 1.3E+02 0.0029 25.4 7.1 32 49-80 14-45 (96)
487 KOG0946 ER-Golgi vesicle-tethe 42.3 64 0.0014 36.5 6.6 56 34-89 839-895 (970)
488 PF05103 DivIVA: DivIVA protei 42.2 23 0.00049 29.4 2.6 43 84-126 27-69 (131)
489 KOG4005 Transcription factor X 42.1 2.5E+02 0.0055 27.8 9.9 90 36-132 70-159 (292)
490 COG4477 EzrA Negative regulato 41.9 2.6E+02 0.0057 30.4 10.7 83 43-125 347-436 (570)
491 KOG2629 Peroxisomal membrane a 41.9 1.5E+02 0.0033 29.8 8.5 26 39-64 132-157 (300)
492 PF13863 DUF4200: Domain of un 41.8 2E+02 0.0043 23.7 13.1 87 39-125 28-117 (126)
493 PF09730 BicD: Microtubule-ass 41.8 3.3E+02 0.0073 30.4 11.9 35 276-313 595-631 (717)
494 PRK15422 septal ring assembly 41.8 2E+02 0.0043 23.7 7.8 53 64-116 4-59 (79)
495 COG5602 SIN3 Histone deacetyla 41.8 2.4E+02 0.0051 32.7 10.7 135 193-328 26-191 (1163)
496 cd07637 BAR_ACAP3 The Bin/Amph 41.7 2.8E+02 0.0061 25.8 9.9 84 44-128 3-86 (200)
497 PRK03947 prefoldin subunit alp 41.7 79 0.0017 26.9 5.9 41 41-81 99-139 (140)
498 PRK10807 paraquat-inducible pr 41.7 2.4E+02 0.0052 30.1 10.5 77 31-107 424-525 (547)
499 PF08606 Prp19: Prp19/Pso4-lik 41.6 1.2E+02 0.0027 24.3 6.5 45 65-109 23-70 (70)
500 PF06705 SF-assemblin: SF-asse 41.6 3E+02 0.0065 25.8 12.2 80 41-122 10-94 (247)
No 1
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=96.91 E-value=0.0026 Score=45.26 Aligned_cols=46 Identities=17% Similarity=0.363 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHhhhhhcCCCChhHHHHHHHhh
Q 019982 282 YEQFAIFLANVKELNAHKQTKEETLRKTDEVFGPENKDLYTIFEGLI 328 (333)
Q Consensus 282 YEQFsaFLANIKELNAhkQTREETL~KAeeIFG~~NkdLY~~FegLL 328 (333)
.|.|.+||..++.++.++.+++|...++.++|+. |+||...|...|
T Consensus 1 p~~Y~~FL~il~~y~~~~~~~~~v~~~v~~Ll~~-hpdLl~~F~~Fl 46 (47)
T PF02671_consen 1 PEVYNEFLKILNDYKKGRISRSEVIEEVSELLRG-HPDLLEEFNRFL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHCTCSCHHHHHHHHHHHTTT--HHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc-CHHHHHHHHhhC
Confidence 3789999999999999999999999999999996 899999998764
No 2
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=96.78 E-value=0.017 Score=58.55 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 55 LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 55 LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
||.-...|+..-.|-|.|..++...+..--..|++|++.|.||+|+|+...-...|.++-|
T Consensus 315 l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~keLeekkreleql 375 (442)
T PF06637_consen 315 LQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKELEEKKRELEQL 375 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444332234688999999999999999988888887763
No 3
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.08 E-value=0.082 Score=47.85 Aligned_cols=61 Identities=18% Similarity=0.341 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHH
Q 019982 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT-VRKLQRDVSKL 115 (333)
Q Consensus 51 E~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~T-vKKL~RDvaKL 115 (333)
++..|...|.||+..+..|++-+..|.-++ ..+++...+|.+||+.|..- +++-++|..+|
T Consensus 131 ~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~----~~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe~m 192 (194)
T PF08614_consen 131 KIKDLEEELKEKNKANEILQDELQALQLQL----NMLEEKLRKLEEENRELVERWMQRKAQEAERM 192 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333344444444444444444444333 36666667777777666543 34444554443
No 4
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.00 E-value=0.085 Score=49.10 Aligned_cols=68 Identities=26% Similarity=0.374 Sum_probs=41.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
...|+-+||.|+..|+++|++-+.. +..+...++. ++..+.+..++|.+||+.|...+.++...+..|
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~---~~~~~~~l~~----~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNT---WNQRTAEMQQ----KVAQSDSVINGLKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999876533 2233333332 222444444556666666666665555555443
No 5
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.90 E-value=0.19 Score=44.19 Aligned_cols=81 Identities=17% Similarity=0.309 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKL 108 (333)
Q Consensus 35 kIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~------~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (333)
|+=.-++-.|+..+|+.+..|-+...+++..|..|+.|+..||..|- ..+....++..+....+.+|-.-|.-|
T Consensus 6 k~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~L 85 (143)
T PF12718_consen 6 KLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLL 85 (143)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHH
Confidence 33445667899999999999999999999999999999999999986 222333334444443444444444444
Q ss_pred hhhHHHH
Q 019982 109 QRDVSKL 115 (333)
Q Consensus 109 ~RDvaKL 115 (333)
--+|...
T Consensus 86 Eeele~a 92 (143)
T PF12718_consen 86 EEELEEA 92 (143)
T ss_pred HHHHHHH
Confidence 4444333
No 6
>PRK11637 AmiB activator; Provisional
Probab=95.84 E-value=0.13 Score=51.50 Aligned_cols=109 Identities=19% Similarity=0.287 Sum_probs=57.6
Q ss_pred CCCChHHHHhcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 019982 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--------- 81 (333)
Q Consensus 11 ~f~Lp~eilaVLPsDPyEQLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~--------- 81 (333)
-|.+-.-|+.+| |-++ .+.++++.-...++.++..+++++.+....|.+++.++..++.+|.
T Consensus 17 ~~~~~~~~~~~l-------l~~~--~~~~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~ 87 (428)
T PRK11637 17 RFAIRPILYASV-------LSAG--VLLCAFSAHASDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQA 87 (428)
T ss_pred hhhhhhHHHHHH-------HHHH--HHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666655 2221 2222333333455556666666665555555555544444444443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019982 82 -DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (333)
Q Consensus 82 -~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 128 (333)
.+|....++...+.+|-+.|...++++..++.+++.--+.+|..+..
T Consensus 88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666666666666666666655544555555544
No 7
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=0.21 Score=53.34 Aligned_cols=85 Identities=28% Similarity=0.404 Sum_probs=73.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019982 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (333)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (333)
+++-.+|.+||.|+..|...+-|.++.|..|+.+++.+...+. -.+.+-..+.+.|.++-..=...|.-|.|.+
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999999999999999988776 3455566778889888888889999999999
Q ss_pred HHHHHHHHHHH
Q 019982 113 SKLEVFRKTLV 123 (333)
Q Consensus 113 aKLE~FKk~Lm 123 (333)
++|+..++-..
T Consensus 505 ~~l~k~~~lE~ 515 (652)
T COG2433 505 AELRKMRKLEL 515 (652)
T ss_pred HHHHHHHhhhh
Confidence 99998887443
No 8
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=95.17 E-value=0.26 Score=38.99 Aligned_cols=24 Identities=42% Similarity=0.553 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 54 ALRSQLAEKDSRIAELQSQIESIY 77 (333)
Q Consensus 54 ~LR~~laEKd~~i~~Lq~rv~~le 77 (333)
.|-..|+|||..|+.|.+....|-
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLS 25 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLS 25 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHH
Confidence 467789999999999996555444
No 9
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=95.06 E-value=0.41 Score=41.39 Aligned_cols=63 Identities=21% Similarity=0.400 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 50 sE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
.++.+|+..+..-...+..|+++++.++..+. .+..+...|.++...+..++|.+..||.||.
T Consensus 59 ~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~----~~~~~~~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 59 DKLRRLRSDIERLQNDVERLKEQLEELERELA----SAEEKERQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443 4444444444555555555555555555443
No 10
>PRK11637 AmiB activator; Provisional
Probab=94.96 E-value=0.47 Score=47.58 Aligned_cols=68 Identities=9% Similarity=0.178 Sum_probs=29.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019982 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (333)
..+..++.++..|..+|.+-...|.+++.++..++..+ ....++..++.++-+.+-..++++.|.+.+
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei----~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQI----DELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444333333 344444444444444444445555554444
No 11
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.73 E-value=0.4 Score=41.47 Aligned_cols=74 Identities=22% Similarity=0.411 Sum_probs=56.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhHHHH
Q 019982 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLS----KENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~----kE~~sLa~TvKKL~RDvaKL 115 (333)
.=+..|+..+.+|+.+++++++.+..++.+...++..+. ..++...+|..+|. .=+....+-+||-.+++.||
T Consensus 66 ~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kL 145 (151)
T PF11559_consen 66 SDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKL 145 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556667788899999999999999999999999888 77777777776654 34455566677777777777
Q ss_pred H
Q 019982 116 E 116 (333)
Q Consensus 116 E 116 (333)
.
T Consensus 146 k 146 (151)
T PF11559_consen 146 K 146 (151)
T ss_pred H
Confidence 4
No 12
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.49 E-value=0.39 Score=43.47 Aligned_cols=85 Identities=26% Similarity=0.438 Sum_probs=45.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
++.||..+..++..|+.++.++...|.+|+..+..|+..+. ..|..-...++.|..|-.+|-.+..-|..-+.||+.
T Consensus 93 l~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 93 LAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999999999999999999888888887776 444444445566777777777777777777777776
Q ss_pred HHHHHHhh
Q 019982 118 FRKTLVQS 125 (333)
Q Consensus 118 FKk~LmqS 125 (333)
=-+.|++-
T Consensus 173 En~~Lv~R 180 (194)
T PF08614_consen 173 ENRELVER 180 (194)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 13
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.43 E-value=0.92 Score=41.93 Aligned_cols=87 Identities=23% Similarity=0.370 Sum_probs=50.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSK---- 114 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK---- 114 (333)
...+..++..+..||..+.+....|.++++++..+..+|. ..|....+...+..+....+.+.++++.+.+.+
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 141 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQ 141 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666666 334433344444445555555555555555554
Q ss_pred HHHHHHHHHhhccc
Q 019982 115 LEVFRKTLVQSLKD 128 (333)
Q Consensus 115 LE~FKk~LmqSLqe 128 (333)
|..=++.|++.|..
T Consensus 142 l~~~r~~l~~~l~~ 155 (302)
T PF10186_consen 142 LARRRRQLIQELSE 155 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 45556667766653
No 14
>PRK09039 hypothetical protein; Validated
Probab=94.32 E-value=0.7 Score=45.80 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=65.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQ-RDVSKL 115 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~-RDvaKL 115 (333)
....|+..|+.+...++...+|....|.-|+.+++.|..+|. +-|..++++.......-+.|..-+.++- +.+..|
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l 192 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQEL 192 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888888888888888888888888876 5566666666666666666666665554 348889
Q ss_pred HHHHHHHHhhcc
Q 019982 116 EVFRKTLVQSLK 127 (333)
Q Consensus 116 E~FKk~LmqSLq 127 (333)
+.||..+..-|.
T Consensus 193 ~~~~~~~~~~l~ 204 (343)
T PRK09039 193 NRYRSEFFGRLR 204 (343)
T ss_pred HHhHHHHHHHHH
Confidence 999999977775
No 15
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.55 E-value=1.9 Score=38.28 Aligned_cols=85 Identities=25% Similarity=0.375 Sum_probs=62.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019982 40 AISTRVSDLESEHSALRSQLAE-------KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laE-------Kd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (333)
-+.-+|-.||+|.......+.. +.+.|..|+++++.+. ..|.....|...|.+||..|.....+.+.-|
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt----~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv 96 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELT----SELNQLELELDTLRSEKENLDKELQKKQEKV 96 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888766655432 2334445555555555 4555899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccc
Q 019982 113 SKLEVFRKTLVQSLKD 128 (333)
Q Consensus 113 aKLE~FKk~LmqSLqe 128 (333)
.-||...-.+-.-|++
T Consensus 97 ~eLE~~~~~~~~~l~~ 112 (140)
T PF10473_consen 97 SELESLNSSLENLLQE 112 (140)
T ss_pred HHHHHHhHHHHHHHHH
Confidence 9999987766655554
No 16
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.53 E-value=1.2 Score=47.34 Aligned_cols=83 Identities=18% Similarity=0.360 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHh------hhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 019982 31 DVARKITSIAISTR------VSDLESEHSALRSQLAEKDSRIA-------ELQSQIESIYSSLS---DKLGQAQADKERL 94 (333)
Q Consensus 31 dvArkIts~A~atR------Vs~LEsE~~~LR~~laEKd~~i~-------~Lq~rv~~le~aL~---~rL~~a~~e~~kL 94 (333)
-=||+|..-+-+.| +.+|+.|+..||.++.++..... +...+++++|+++. .|.+..++|...|
T Consensus 95 ~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~L 174 (546)
T KOG0977|consen 95 ATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRL 174 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34677777665544 67888888888888888855443 44556667777776 8889999999999
Q ss_pred HHHHHHHHHHHHHHhhhHH
Q 019982 95 SKENEALTNTVRKLQRDVS 113 (333)
Q Consensus 95 ~kE~~sLa~TvKKL~RDva 113 (333)
.+||..|-..+..+..+++
T Consensus 175 k~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 175 KAENSRLREELARARKQLD 193 (546)
T ss_pred HHHhhhhHHHHHHHHHHHH
Confidence 9999999888877765443
No 17
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.39 E-value=1.3 Score=42.55 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 019982 33 ARKITSIAISTRVSDLESEHSALRSQLA 60 (333)
Q Consensus 33 ArkIts~A~atRVs~LEsE~~~LR~~la 60 (333)
+..|.=-.|..-|+++|.|+..+|+++.
T Consensus 49 ~~~~e~e~le~qv~~~e~ei~~~r~r~~ 76 (239)
T COG1579 49 ALEIELEDLENQVSQLESEIQEIRERIK 76 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666666666666666654
No 18
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=93.36 E-value=1.2 Score=35.12 Aligned_cols=58 Identities=28% Similarity=0.398 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 019982 47 DLESEHSALRSQLAEKDSRIA--ELQSQIESIYSSLS-DKLGQAQADKERLSKENEALTNT 104 (333)
Q Consensus 47 ~LEsE~~~LR~~laEKd~~i~--~Lq~rv~~le~aL~-~rL~~a~~e~~kL~kE~~sLa~T 104 (333)
+||+++..||..|.-=.+++. +..-+.-..|+.-. .+|..|-+++.+|..|++.|..-
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888888743333322 22222222233222 56777888888888887777655
No 19
>PRK03918 chromosome segregation protein; Provisional
Probab=93.36 E-value=2.4 Score=45.51 Aligned_cols=33 Identities=24% Similarity=0.172 Sum_probs=16.2
Q ss_pred hcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHH
Q 019982 20 QVLPSDPFEQLDVARKITSIAISTRVSDLESEH 52 (333)
Q Consensus 20 aVLPsDPyEQLdvArkIts~A~atRVs~LEsE~ 52 (333)
.++-.|-|+++.-.-+-..-.+..++..|+..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 185 (880)
T PRK03918 153 QILGLDDYENAYKNLGEVIKEIKRRIERLEKFI 185 (880)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666654444444444555554444433
No 20
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.87 E-value=0.93 Score=42.28 Aligned_cols=64 Identities=14% Similarity=0.230 Sum_probs=40.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (333)
++-..+..|+.+...++++.. ...++|++++.+++.... ...++|.+|.+|...+.+.+..|..
T Consensus 97 ~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~----~L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVIN----GLKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888887654 556666777666665554 4455555555555555555544443
No 21
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.71 E-value=3.2 Score=36.80 Aligned_cols=83 Identities=18% Similarity=0.354 Sum_probs=41.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
....++..|+.|...+...+.+...++..+++....+...+. +++....++...+.+|-..|-+-++.+.+.+.+++
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 164 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELR 164 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555444444443333 55555555555555555555544444444554444
Q ss_pred HHHHHH
Q 019982 117 VFRKTL 122 (333)
Q Consensus 117 ~FKk~L 122 (333)
...+.+
T Consensus 165 ~~~~~~ 170 (191)
T PF04156_consen 165 SQLERL 170 (191)
T ss_pred HHHHHH
Confidence 444443
No 22
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.58 E-value=3.1 Score=39.94 Aligned_cols=81 Identities=16% Similarity=0.343 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---------HHHHHHHHHH
Q 019982 32 VARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQA---------DKERLSKENE 99 (333)
Q Consensus 32 vArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~---------e~~kL~kE~~ 99 (333)
|+.+|++ +--=+-++++|..+++..+.+++-.+.+|+.+|..++..++ .|+..+.. +...|..|-+
T Consensus 22 l~~~~~~--~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~ 99 (239)
T COG1579 22 LEPRIKE--IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQ 99 (239)
T ss_pred HHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 4455552 22336678889999999999999999999999999999888 44444332 2244555555
Q ss_pred HHHHHHHHHhhhHHH
Q 019982 100 ALTNTVRKLQRDVSK 114 (333)
Q Consensus 100 sLa~TvKKL~RDvaK 114 (333)
.+-.....|+.+++.
T Consensus 100 ~ak~r~~~le~el~~ 114 (239)
T COG1579 100 IAKERINSLEDELAE 114 (239)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555544443
No 23
>PRK02224 chromosome segregation protein; Provisional
Probab=92.35 E-value=3.6 Score=44.53 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=9.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Q 019982 102 TNTVRKLQRDVSKLEVFRKTLVQ 124 (333)
Q Consensus 102 a~TvKKL~RDvaKLE~FKk~Lmq 124 (333)
...++.++..+.+|+.....|.+
T Consensus 278 ~~~i~~~~~~~~~le~e~~~l~~ 300 (880)
T PRK02224 278 AEEVRDLRERLEELEEERDDLLA 300 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 24
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.17 E-value=2.7 Score=44.59 Aligned_cols=44 Identities=16% Similarity=0.305 Sum_probs=34.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 019982 38 SIAISTRVSDLESEHSALRSQLAE--KDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 38 s~A~atRVs~LEsE~~~LR~~laE--Kd~~i~~Lq~rv~~le~aL~ 81 (333)
-.++..++..||.|+..|.++|.. .+..+..|++++..++..+.
T Consensus 393 ~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~ 438 (650)
T TIGR03185 393 KSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELF 438 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 467778899999999999999974 34677888888877777665
No 25
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=92.14 E-value=1.6 Score=45.22 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccc
Q 019982 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (333)
Q Consensus 66 i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~ 130 (333)
...+..++...|.+|+ ...+|+.+|.+|+-.+..|+|.|.+|+-.+|+.+=++.+-+.+-.
T Consensus 43 ~~ai~a~~~~~E~~l~----~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~ 103 (459)
T KOG0288|consen 43 SRAIKAKLQEKELELN----RLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELR 103 (459)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443 444566666666666777777777777777777766666555443
No 26
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.11 E-value=2.3 Score=41.78 Aligned_cols=77 Identities=19% Similarity=0.334 Sum_probs=44.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~----------~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (333)
++-..+..||.|...|.+.|.+=+..-++|.+.+..|+.++. .....-.-+...+.+|+++|-+.+.-+.
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~ 126 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYAS 126 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777777666666666666666665554 1111112223445566777777766666
Q ss_pred hhHHHHH
Q 019982 110 RDVSKLE 116 (333)
Q Consensus 110 RDvaKLE 116 (333)
..+.||+
T Consensus 127 ~~L~~L~ 133 (314)
T PF04111_consen 127 NQLDRLR 133 (314)
T ss_dssp HHHHCHH
T ss_pred HHHHHHH
Confidence 6666663
No 27
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.94 E-value=4.1 Score=47.09 Aligned_cols=111 Identities=20% Similarity=0.256 Sum_probs=74.2
Q ss_pred ChHHHHh-cCCCChhhhHHHHHHHHHHH---------------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 14 LPEEVLQ-VLPSDPFEQLDVARKITSIA---------------ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (333)
Q Consensus 14 Lp~eila-VLPsDPyEQLdvArkIts~A---------------~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le 77 (333)
|-+|||. +||.+|.+=.+|+-+|-... =..|+..|++|+.+-|....+-.....+.++-++..|
T Consensus 1497 vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad 1576 (1758)
T KOG0994|consen 1497 VAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEAD 1576 (1758)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4456665 69999998888887775432 2478999999999999887766666777777777777
Q ss_pred HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHh
Q 019982 78 SSLS----------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL----EVFRKTLVQ 124 (333)
Q Consensus 78 ~aL~----------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL----E~FKk~Lmq 124 (333)
.++. .-++.+.+...|..+|-..--.++...+..|++| |.+|...||
T Consensus 1577 ~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~q 1637 (1758)
T KOG0994|consen 1577 VAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQ 1637 (1758)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7665 3445556666666666655444444444444444 445555554
No 28
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=91.94 E-value=1.2 Score=49.90 Aligned_cols=84 Identities=19% Similarity=0.336 Sum_probs=61.2
Q ss_pred CCCCcc-CCCCCCCCCCCCC--ccc---hHHHHHHHHhccC--HHHHHHHHHHHHHHhhccccHHHHHHhhhhhcCCCCh
Q 019982 247 HSSHSS-ISSSESGSQTGKT--RVD---GKEFFRQVRNRLS--YEQFAIFLANVKELNAHKQTKEETLRKTDEVFGPENK 318 (333)
Q Consensus 247 ~ss~~s-~spp~~~s~~gr~--rVD---GKEFFRQARsRLS--YEQFsaFLANIKELNAhkQTREETL~KAeeIFG~~Nk 318 (333)
||.++. .|+|+.-+...++ +|| .--|.-.+|.|+. .|+|-.||.-.+-.---..+-.|....+.++|. +++
T Consensus 244 ps~~Q~e~s~~~~~~sd~~~~~~~d~nqAI~~vnkVK~r~~~~pe~y~~fl~~Lrtyq~~qr~i~ev~~~Vt~lfa-~~P 322 (1163)
T COG5602 244 PSDSQPEPSAPSHMPSDARGKHQVDFNQAIIFVNKVKVRFQNNPEMYYDFLDSLRTYQMKQRSIQEVYARVTKLFA-EAP 322 (1163)
T ss_pred ccccCCCCCCcccCCcccccccceehhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhccHHHHHHHHHHHHh-hCh
Confidence 444444 4445444443443 443 1457777899987 599999999998876666677889999999997 589
Q ss_pred hHHHHHHHhhccc
Q 019982 319 DLYTIFEGLITRN 331 (333)
Q Consensus 319 dLY~~FegLL~R~ 331 (333)
|||++|..+|--|
T Consensus 323 dLleeFk~FLPd~ 335 (1163)
T COG5602 323 DLLEEFKEFLPDS 335 (1163)
T ss_pred HHHHHHHHhCccc
Confidence 9999999998544
No 29
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.91 E-value=1.5 Score=43.70 Aligned_cols=72 Identities=21% Similarity=0.415 Sum_probs=54.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH----------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAE----------------KDSRI---AELQSQIESIYSSLSDKLGQAQADKERLSKENEA 100 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laE----------------Kd~~i---~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~s 100 (333)
.+..|+..++.++.-||.+++. |...| +.+++++.+||..|+ ..+||++.|..|||.
T Consensus 90 ~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~q----s~lDEkeEl~~ERD~ 165 (319)
T PF09789_consen 90 ELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQ----SLLDEKEELVTERDA 165 (319)
T ss_pred HHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4555666666666666665543 44444 445678888888888 999999999999999
Q ss_pred HHHHHHHHhhhHHHH
Q 019982 101 LTNTVRKLQRDVSKL 115 (333)
Q Consensus 101 La~TvKKL~RDvaKL 115 (333)
...-|-+||..+..+
T Consensus 166 yk~K~~RLN~ELn~~ 180 (319)
T PF09789_consen 166 YKCKAHRLNHELNYI 180 (319)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988664
No 30
>PHA02562 46 endonuclease subunit; Provisional
Probab=91.47 E-value=2.5 Score=42.97 Aligned_cols=98 Identities=11% Similarity=0.239 Sum_probs=61.9
Q ss_pred HHhcCCCChhhhHHHHHHHHHH--------HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 18 VLQVLPSDPFEQLDVARKITSI--------AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQA 89 (333)
Q Consensus 18 ilaVLPsDPyEQLdvArkIts~--------A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~ 89 (333)
+...++..|.+-..+-.+|... ....++..++.++..|+.++.+....+..++..++.++..+...+....+
T Consensus 141 f~~f~~~~~~er~~il~~l~~~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~ 220 (562)
T PHA02562 141 YVPFMQLSAPARRKLVEDLLDISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQN 220 (562)
T ss_pred hhhHhcCChHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444555566655555555543 34666677788888888888888888888877777777765544455555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 90 DKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 90 e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
+..+|.++...|...+.+|..++..|
T Consensus 221 e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 221 KYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555444
No 31
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.47 E-value=0.64 Score=45.43 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=31.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~ 78 (333)
+..|+.||++|...|++||.+|-+-..+|+.|-.
T Consensus 227 i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKa 260 (305)
T KOG3990|consen 227 IQKLKEEIARLKKLLHQKDQLILEKDKQISNLKA 260 (305)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCc
Confidence 4689999999999999999999999999998765
No 32
>PHA02562 46 endonuclease subunit; Provisional
Probab=91.46 E-value=2.2 Score=43.37 Aligned_cols=11 Identities=18% Similarity=0.226 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 019982 285 FAIFLANVKEL 295 (333)
Q Consensus 285 FsaFLANIKEL 295 (333)
...|+.-|+++
T Consensus 515 ~~~~~~~l~~~ 525 (562)
T PHA02562 515 TKALLSILDSL 525 (562)
T ss_pred HHHHHHHHHhC
Confidence 33444444444
No 33
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.29 E-value=1 Score=51.61 Aligned_cols=77 Identities=25% Similarity=0.364 Sum_probs=53.4
Q ss_pred HHHHhhhhhHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQL-----------------AEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE 99 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~l-----------------aEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~ 99 (333)
||.+++..+|..+...|..| ++-.+.|.++++++.++|..|. .-|..+.-|.+-|++|.+
T Consensus 1198 ay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~ 1277 (1758)
T KOG0994|consen 1198 AYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFN 1277 (1758)
T ss_pred hhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHH
Confidence 78888888888777777666 2223334444444455554444 344456667789999999
Q ss_pred HHHHHHHHHhhhHHHHH
Q 019982 100 ALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 100 sLa~TvKKL~RDvaKLE 116 (333)
.|-+|+|.|.-.+.||.
T Consensus 1278 ~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1278 GLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999988864
No 34
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.28 E-value=4.6 Score=40.29 Aligned_cols=86 Identities=31% Similarity=0.457 Sum_probs=52.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHh
Q 019982 39 IAISTRVSDLESEHSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT--------VRKLQ 109 (333)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~la-EKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~T--------vKKL~ 109 (333)
+.+..|+.+|-.|-..|=..|. |...++.-|+.++..|+.... .-..+..+|.+|+--|-|| |.+|.
T Consensus 109 n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~----~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~ 184 (310)
T PF09755_consen 109 NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKS----AKQEELERLRREKVDLENTLEQEQEALVNRLW 184 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554 444555556666665554332 1222334666666666555 67899
Q ss_pred hhHHHHHHHHHHHHhhccc
Q 019982 110 RDVSKLEVFRKTLVQSLKD 128 (333)
Q Consensus 110 RDvaKLE~FKk~LmqSLqe 128 (333)
..++||++=||.|=..|..
T Consensus 185 Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 185 KQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 9999999999998877754
No 35
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=91.15 E-value=7.8 Score=38.93 Aligned_cols=99 Identities=21% Similarity=0.305 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--H------------
Q 019982 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQA--D------------ 90 (333)
Q Consensus 28 EQLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~--e------------ 90 (333)
..|.-...-|..|+..||...+.--..|--++.+-...|++++.-+..|+.++. .-|+.|.- +
T Consensus 236 ~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcr 315 (384)
T PF03148_consen 236 NDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCR 315 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHH
Confidence 344555667889999999987777777777777777777777777777777777 22222221 1
Q ss_pred ---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019982 91 ---KERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (333)
Q Consensus 91 ---~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 126 (333)
+..|.+|-..|..++.+|+.-+...+.--+.|.+..
T Consensus 316 D~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~ 354 (384)
T PF03148_consen 316 DPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTR 354 (384)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999998888887653
No 36
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=91.13 E-value=3.7 Score=38.46 Aligned_cols=75 Identities=27% Similarity=0.403 Sum_probs=56.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
.|--+||++-.-+...+++-+.....||.-+.-...+=+ ++-..+.+|-..|..|+..+-..+.+|+|.|.-|+.
T Consensus 105 irR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 105 IRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777777766666666666666655443333222 788899999999999999999999999999998874
No 37
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.11 E-value=1.6 Score=40.83 Aligned_cols=79 Identities=13% Similarity=0.195 Sum_probs=58.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 019982 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (333)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~F 118 (333)
-+.+++...||+++++++++.+..++-++-.. .-.. ..+++++.|.++.++|....+-|.-+|+|++-=
T Consensus 77 ~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K-------~~~e----~tEer~~el~kklnslkk~~e~lr~el~k~~e~ 145 (203)
T KOG3433|consen 77 CDRKSVLQELESQLATGSQKKATLGESIENRK-------AGRE----ETEERTDELTKKLNSLKKILESLRWELAKIQET 145 (203)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHH-------hhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36788999999999999999888777555433 2221 566777899999999999999999999998754
Q ss_pred HHHHHhhccc
Q 019982 119 RKTLVQSLKD 128 (333)
Q Consensus 119 Kk~LmqSLqe 128 (333)
+-++..-+..
T Consensus 146 dpqv~~k~~~ 155 (203)
T KOG3433|consen 146 DPQVFEKKVH 155 (203)
T ss_pred CHHHHHHHHH
Confidence 4444433333
No 38
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=90.76 E-value=3.6 Score=35.04 Aligned_cols=67 Identities=25% Similarity=0.322 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019982 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (333)
Q Consensus 47 ~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (333)
+|=.|-.+||++..---..+-+=|.+...|...|. ..|+..++|+.-|.=-|+.|..-|--|+-++.
T Consensus 2 kla~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 2 KLAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888877544444455667777777776 45556666666666666666666666666655
No 39
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=90.64 E-value=11 Score=35.00 Aligned_cols=89 Identities=17% Similarity=0.211 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 29 QLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (333)
Q Consensus 29 QLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (333)
=|+|.-+-..+|+......||+....|...|++..+.|.++..+=-..+.+...+|...+..-..|...|-.+-..+.+|
T Consensus 122 NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~L 201 (221)
T PF05700_consen 122 NLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEEL 201 (221)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888899999999999999999999999999999998764443333334667777777777777777777777777
Q ss_pred hhhHHHHHH
Q 019982 109 QRDVSKLEV 117 (333)
Q Consensus 109 ~RDvaKLE~ 117 (333)
..+|..|+.
T Consensus 202 e~ei~~l~~ 210 (221)
T PF05700_consen 202 EQEIEQLKR 210 (221)
T ss_pred HHHHHHHHH
Confidence 766666643
No 40
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=90.55 E-value=7.9 Score=31.78 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=56.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-------HHH
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK-------LEV 117 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK-------LE~ 117 (333)
+-++|.+...++..+..|-..+..|++++..|+.... .+.++.-.+-+-+++|.+-+|+|+.-+.| |.-
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~----kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKA----KADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4578899999999999999999999999999998887 55555555555666666666666555544 554
Q ss_pred HHHHHHhhcc
Q 019982 118 FRKTLVQSLK 127 (333)
Q Consensus 118 FKk~LmqSLq 127 (333)
.=+.+++.|.
T Consensus 81 ~E~~~~~~l~ 90 (96)
T PF08647_consen 81 TEKEFVRKLK 90 (96)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 41
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=90.52 E-value=10 Score=33.72 Aligned_cols=64 Identities=20% Similarity=0.372 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 52 ~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
...|..++.||...+..|+.++..-=..|. .+|.....+...+..+-...-..+.++..++.++
T Consensus 51 n~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~ 117 (177)
T PF13870_consen 51 NQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRV 117 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333333 3344444444444444444444444444444333
No 42
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=90.50 E-value=1.3 Score=36.08 Aligned_cols=41 Identities=27% Similarity=0.428 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019982 70 QSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQR 110 (333)
Q Consensus 70 q~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (333)
..++-.|...|. +|.....+|+.||..||.-|..-|..|..
T Consensus 22 i~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 22 IQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555566665 89999999999999999999999998865
No 43
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=90.42 E-value=4.1 Score=44.44 Aligned_cols=12 Identities=17% Similarity=0.324 Sum_probs=7.4
Q ss_pred HHHHhhhhhcCC
Q 019982 304 ETLRKTDEVFGP 315 (333)
Q Consensus 304 ETL~KAeeIFG~ 315 (333)
.++..|+.++|-
T Consensus 1138 ~~~~~~d~~~~~ 1149 (1164)
T TIGR02169 1138 PMIEYADRAIGV 1149 (1164)
T ss_pred HHHHhcceeEeE
Confidence 466666666663
No 44
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.88 E-value=16 Score=33.77 Aligned_cols=78 Identities=18% Similarity=0.294 Sum_probs=53.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019982 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (333)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (333)
......|..+..|..+|+.-|..-...+.+|+.++...+..-+ +|+....++...|.-|...|-.-+.+|.++-
T Consensus 44 ~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Er 123 (201)
T PF13851_consen 44 ERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQER 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777777777777777777777777777776665433 6777777777777777777777777766665
Q ss_pred HHHH
Q 019982 113 SKLE 116 (333)
Q Consensus 113 aKLE 116 (333)
.-|.
T Consensus 124 deL~ 127 (201)
T PF13851_consen 124 DELY 127 (201)
T ss_pred HHHH
Confidence 5543
No 45
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.79 E-value=6.2 Score=38.60 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=5.5
Q ss_pred hhhhhHHHHHHHHH
Q 019982 44 RVSDLESEHSALRS 57 (333)
Q Consensus 44 RVs~LEsE~~~LR~ 57 (333)
|-..|+.|+..||+
T Consensus 185 ~~~~L~~e~~~Lk~ 198 (325)
T PF08317_consen 185 RKAELEEELENLKQ 198 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444443333
No 46
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=89.77 E-value=10 Score=39.14 Aligned_cols=75 Identities=24% Similarity=0.318 Sum_probs=49.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH--
Q 019982 42 STRVSDLESEHSALRSQLAEKD----SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL-- 115 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd----~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL-- 115 (333)
.+||+++|.|+..=|..-..-+ .+|.++...++.|- ++|..-+..+.-|..|+.+|-.+||.|.-|...|
T Consensus 219 ksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LR----Ael~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p 294 (561)
T KOG1103|consen 219 KSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLR----AELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP 294 (561)
T ss_pred ccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 4788999988877666333222 23333333333222 5555666677778899999999999999888776
Q ss_pred -HHHHH
Q 019982 116 -EVFRK 120 (333)
Q Consensus 116 -E~FKk 120 (333)
|.+|+
T Consensus 295 NeqLk~ 300 (561)
T KOG1103|consen 295 NEQLKG 300 (561)
T ss_pred cccccC
Confidence 55555
No 47
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=89.76 E-value=3.4 Score=42.69 Aligned_cols=39 Identities=21% Similarity=0.443 Sum_probs=20.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
-|......|+..+..++.+.......|++.+.++|..+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~ 76 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIA 76 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555554444443
No 48
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=89.70 E-value=6.7 Score=34.52 Aligned_cols=71 Identities=23% Similarity=0.368 Sum_probs=40.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAE----------LQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVR 106 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~----------Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvK 106 (333)
++-.|++.||.++..+..+|.+-...+.+ |+.||..||..|- .+|..+.+........-+-+-..|+
T Consensus 39 sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~ 118 (143)
T PF12718_consen 39 SLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVK 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 46788888888888888877655444443 5555555555554 4444444444444444444444444
Q ss_pred HHhh
Q 019982 107 KLQR 110 (333)
Q Consensus 107 KL~R 110 (333)
.|.-
T Consensus 119 ~le~ 122 (143)
T PF12718_consen 119 ALEQ 122 (143)
T ss_pred HHHh
Confidence 4433
No 49
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.65 E-value=6.8 Score=33.91 Aligned_cols=71 Identities=25% Similarity=0.408 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019982 54 ALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL---TNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (333)
Q Consensus 54 ~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sL---a~TvKKL~RDvaKLE~FKk~LmqSLqe 128 (333)
+|-..|.-++-.+..|+.+++.|+.+=. .+.+|..+|.++++.+ ...+.+|..++.-|+.==-++++=|.|
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~----~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERD----ELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444455555555556655555443 5555566666666433 344555555555555544445444443
No 50
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.50 E-value=4.4 Score=43.39 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------HHhhhHHHHHHHHHHHHhhcccccC
Q 019982 85 GQAQADKERLSKENEALTNTVR-----------------KLQRDVSKLEVFRKTLVQSLKDDED 131 (333)
Q Consensus 85 ~~a~~e~~kL~kE~~sLa~TvK-----------------KL~RDvaKLE~FKk~LmqSLqeD~~ 131 (333)
..-++|+++|+++++.|-+.|. +|.|+|.|++.=+-.|+|.+-+-+.
T Consensus 304 e~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l 367 (581)
T KOG0995|consen 304 EEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKL 367 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3455667777777777777664 4667777777777777777766655
No 51
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=89.39 E-value=0.62 Score=43.63 Aligned_cols=35 Identities=31% Similarity=0.473 Sum_probs=31.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~ 74 (333)
-+.+-+.++|.||..||+-|+-|++|.+||..|+-
T Consensus 48 elr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLG 82 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLG 82 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46788899999999999999999999999998864
No 52
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=89.26 E-value=6 Score=36.28 Aligned_cols=64 Identities=22% Similarity=0.420 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 47 ~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
.++..+.+|.+++.+....|.+|+++++.+...- ...++-..|.++...|...+++|...++++
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r-----~~~~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGR-----EESEEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666665553221 222344444455555555555555444433
No 53
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=89.16 E-value=5.6 Score=43.48 Aligned_cols=11 Identities=0% Similarity=-0.136 Sum_probs=4.8
Q ss_pred hhcCCCChhHH
Q 019982 311 EVFGPENKDLY 321 (333)
Q Consensus 311 eIFG~~NkdLY 321 (333)
=||=..+..++
T Consensus 1130 ~i~~t~~~~~~ 1140 (1164)
T TIGR02169 1130 FIVVSLRSPMI 1140 (1164)
T ss_pred EEEEECcHHHH
Confidence 34444444433
No 54
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=88.97 E-value=5.5 Score=37.90 Aligned_cols=41 Identities=12% Similarity=0.115 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cccccCC
Q 019982 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS-LKDDEDA 132 (333)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqS-LqeD~~~ 132 (333)
.++..|++..-..+.+|..++.+|..+=-.+..+ |.-+...
T Consensus 70 kqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~Lp 111 (230)
T PF10146_consen 70 KQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLEPLP 111 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3445666666777777777777777777777777 6665543
No 55
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=88.86 E-value=3.5 Score=38.11 Aligned_cols=61 Identities=30% Similarity=0.431 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVR 106 (333)
Q Consensus 46 s~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~-------~rL~~a~~e~~kL~kE~~sLa~TvK 106 (333)
..|..++..+..+|.+++..|..|+.++.-....++ .|...+..+...|..|...|-+.+|
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777888888888888877776666665 4444444455555555554444444
No 56
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.71 E-value=2.1 Score=46.60 Aligned_cols=55 Identities=31% Similarity=0.453 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 019982 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSS---LSDKLGQAQADKERLSKENEAL 101 (333)
Q Consensus 47 ~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~a---L~~rL~~a~~e~~kL~kE~~sL 101 (333)
+||+|+.+||..|.-......||+.++..|+.. +..=|.+...||+.|+.....|
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L 479 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNL 479 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999997776653 3344445555665555543333
No 57
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=88.58 E-value=3.4 Score=32.49 Aligned_cols=55 Identities=24% Similarity=0.415 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHH
Q 019982 63 DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL----EVFRKT 121 (333)
Q Consensus 63 d~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL----E~FKk~ 121 (333)
+..|..||.++..+++.+. ....++..|..||+..+..+-....+..|| |+.|+.
T Consensus 4 ea~~~~Lr~rLd~~~rk~~----~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNS----VHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999987666 888999999999999998888877777665 555555
No 58
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=88.38 E-value=4.3 Score=38.96 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (333)
Q Consensus 46 s~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~a 79 (333)
..|+.++..|.+++.|-..+|+.|+.-+..++..
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5789999999999999999999999999998854
No 59
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=88.38 E-value=11 Score=33.43 Aligned_cols=70 Identities=21% Similarity=0.430 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 47 ~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
+++.|+..+.+++.+-.+.+.++++++..++..+. .-.....++......+-+++...++.+..++..|.
T Consensus 78 ~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 78 RLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555444444443 11112223334444444555555555555555554
No 60
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=88.33 E-value=4.2 Score=42.59 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=26.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
|..+|..|+.|+..|..+=..=-.+.+.|++|-..++..++
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~ 104 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQ 104 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 44566666666666665544444556677777777777776
No 61
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=88.24 E-value=7.9 Score=35.77 Aligned_cols=70 Identities=24% Similarity=0.340 Sum_probs=44.2
Q ss_pred HhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 43 TRVSDLESEHSALRSQLAEK-------DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~laEK-------d~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
.+=.++-.+..+|-.++.++ +.+|.+|+.++..|+.+.+ .....++..-+|...|..-+.+|+.++...
T Consensus 103 ~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~----~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 103 DDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAA----KLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445556666666666 7777777777777776655 333444444467777777777777777666
Q ss_pred H
Q 019982 116 E 116 (333)
Q Consensus 116 E 116 (333)
|
T Consensus 179 e 179 (190)
T PF05266_consen 179 E 179 (190)
T ss_pred H
Confidence 5
No 62
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=88.05 E-value=20 Score=33.17 Aligned_cols=42 Identities=29% Similarity=0.452 Sum_probs=26.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
....|+..|..++..+|..+.++.+.+.++++.+......|.
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777777776666666666666665555443
No 63
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=88.02 E-value=5.5 Score=47.99 Aligned_cols=92 Identities=24% Similarity=0.336 Sum_probs=79.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------DKLGQAQADKERLSKENEALTNTVR 106 (333)
Q Consensus 38 s~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~-----------~rL~~a~~e~~kL~kE~~sLa~TvK 106 (333)
..+++..+.+|+.|+..||.++.|=....++|+.+++.+-..++ .++....+.+.+|++.-..+...+.
T Consensus 1317 k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e 1396 (1930)
T KOG0161|consen 1317 KSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIE 1396 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 46788899999999999999999999999999999999888877 3356677777888888888999999
Q ss_pred HHhhhHHHHHHHHHHHHhhcccc
Q 019982 107 KLQRDVSKLEVFRKTLVQSLKDD 129 (333)
Q Consensus 107 KL~RDvaKLE~FKk~LmqSLqeD 129 (333)
-++.-.++||.-|..|+|-|.+=
T Consensus 1397 ~~~~~~~~Lek~k~~l~~el~d~ 1419 (1930)
T KOG0161|consen 1397 AANAKNASLEKAKNRLQQELEDL 1419 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999998876553
No 64
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.82 E-value=5.2 Score=43.62 Aligned_cols=41 Identities=32% Similarity=0.463 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 36 ITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (333)
Q Consensus 36 Its~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~l 76 (333)
-..-+...|+..||.|+.+||..|..|++.+..|++.+.+|
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l 578 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQEL 578 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557889999999999999999999999999999887533
No 65
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=87.82 E-value=5 Score=35.20 Aligned_cols=65 Identities=22% Similarity=0.323 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhhHHHHHHHHHHHHhhccccc
Q 019982 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENE-----ALTNTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (333)
Q Consensus 62 Kd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~-----sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~ 130 (333)
|+....+|++++..+|.+|+ +..-+..++.+|.. .+.+--...+...++++..|+.|.+-|+.=+
T Consensus 18 K~~l~~~l~~~i~~~d~el~----QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~ 87 (131)
T PF11068_consen 18 KEELLQELQEQIQQLDQELQ----QLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQ 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78889999999999999998 77777777877775 6666667888889999999999887766543
No 66
>PRK02224 chromosome segregation protein; Provisional
Probab=87.80 E-value=10 Score=41.01 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=21.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
..++..|+.++..++.++.++.+.+.+|++++..|+..+.
T Consensus 515 ~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~ 554 (880)
T PRK02224 515 EERREDLEELIAERRETIEEKRERAEELRERAAELEAEAE 554 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555556666666666655553
No 67
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=87.76 E-value=20 Score=37.25 Aligned_cols=99 Identities=24% Similarity=0.318 Sum_probs=80.1
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH---------
Q 019982 26 PFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----DKLGQAQADK--------- 91 (333)
Q Consensus 26 PyEQLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~-----~rL~~a~~e~--------- 91 (333)
.-.||--=+-.+..|+..|+...+.=-.+|--+|+.+.+.|++.+..|..++.+|. -|+.+..-|+
T Consensus 261 tan~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~Rt~RPnvEL 340 (421)
T KOG2685|consen 261 TANDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLENRTYRPNVEL 340 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHHcccCCchHH
Confidence 34455555666788999999999999999999999999999999999999999998 4555554443
Q ss_pred ------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019982 92 ------ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (333)
Q Consensus 92 ------~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lmq 124 (333)
-.|..|--.|-.||..|.--|++=|.=++-|..
T Consensus 341 CrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~ 379 (421)
T KOG2685|consen 341 CRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVN 379 (421)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888888877766666654
No 68
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=87.47 E-value=9 Score=37.87 Aligned_cols=51 Identities=18% Similarity=0.185 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 019982 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEAL 101 (333)
Q Consensus 51 E~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sL 101 (333)
|..+||.+|++-+..|...+.++++++.+|+ +++....+++..+..+-+.+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~a 258 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555554 44444444444444444333
No 69
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.33 E-value=13 Score=36.35 Aligned_cols=89 Identities=18% Similarity=0.320 Sum_probs=52.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH-------HHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--------------DKLGQAQ-------ADKERLSKENE 99 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~--------------~rL~~a~-------~e~~kL~kE~~ 99 (333)
+..++..|+.+...|...+..=+.+..+|.++.+.|+..+. ..|..+. .+.+.+.++-+
T Consensus 154 L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~ 233 (325)
T PF08317_consen 154 LEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELA 233 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777666777777777776666654 2222222 22233333444
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019982 100 ALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (333)
Q Consensus 100 sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (333)
.|-..+..|.-++.+++.=|..+..-+++=
T Consensus 234 el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 234 ELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666777777776666653
No 70
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=87.29 E-value=3.6 Score=41.01 Aligned_cols=84 Identities=20% Similarity=0.259 Sum_probs=67.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV----SKL 115 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv----aKL 115 (333)
..++|+.+||.-+.+= -.|+...++.|.+..+.++. |.+|+..-.+.++||+.-|.-|-.-|+|+.-|| .||
T Consensus 2 ~~k~~~~~~~~~i~k~---nee~~~~~~~~~k~~e~~qk-l~sr~~~~~ekke~i~r~n~k~~d~v~~~~~~~~~~~erl 77 (359)
T KOG4398|consen 2 SCKMRIEQLKQTICKG---NEEMEKNSEGLLKTKEKNQK-LYSRAQRHQEKKEKIQRHNRKLGDLVEKKTIDLRSHYERL 77 (359)
T ss_pred chhHHHHHHHHHHhcC---cHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHH
Confidence 4567777777666543 45677778888877776654 447999999999999999999999999998775 799
Q ss_pred HHHHHHHHhhcc
Q 019982 116 EVFRKTLVQSLK 127 (333)
Q Consensus 116 E~FKk~LmqSLq 127 (333)
+.++++-++-|-
T Consensus 78 ~~lr~shi~el~ 89 (359)
T KOG4398|consen 78 ANLRRSHILELT 89 (359)
T ss_pred HHHHHHHHHHHH
Confidence 999999887663
No 71
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=87.23 E-value=10 Score=35.42 Aligned_cols=54 Identities=24% Similarity=0.370 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHH------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 28 EQLDVARKITSIA------ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 28 EQLdvArkIts~A------~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
.||.-|..|..-| +..|+.-+|.++.+.-.++..-...|.+|++++..+...|.
T Consensus 99 ~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk 158 (237)
T PF00261_consen 99 QQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLK 158 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 3555555555544 35566666666666666666555666666666555555543
No 72
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=87.05 E-value=12 Score=37.08 Aligned_cols=78 Identities=15% Similarity=0.268 Sum_probs=35.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDS----RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~----~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
+..|...|+.|+..||+.-.|-+. ....|++++..++..+. ...++-..+..++..|+-+|..++
T Consensus 177 l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~-----------~~~~~l~e~~~~l~~l~~~I~~~~ 245 (312)
T smart00787 177 LRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIM-----------IKVKKLEELEEELQELESKIEDLT 245 (312)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555544322 44444444444444433 333344444444444444444444
Q ss_pred HHHHHHHhhcccc
Q 019982 117 VFRKTLVQSLKDD 129 (333)
Q Consensus 117 ~FKk~LmqSLqeD 129 (333)
.=|-.+...|++-
T Consensus 246 ~~k~e~~~~I~~a 258 (312)
T smart00787 246 NKKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 73
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=87.04 E-value=6.4 Score=39.05 Aligned_cols=91 Identities=21% Similarity=0.305 Sum_probs=57.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHH--------------
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQA-DKERLSKENEAL-------------- 101 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~-e~~kL~kE~~sL-------------- 101 (333)
.+.+++..||.+...|+....++.-.+..|+.+++.++..|. .++....+ +...+....+.|
T Consensus 258 ~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l 337 (444)
T TIGR03017 258 NLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVLEL 337 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888889999999998888888888888888888888876 22222111 111122222222
Q ss_pred ---HHHHHHHhhhHHHHHHHHHHHHhhccccc
Q 019982 102 ---TNTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (333)
Q Consensus 102 ---a~TvKKL~RDvaKLE~FKk~LmqSLqeD~ 130 (333)
......|.||+.--+..=..|++.+++-.
T Consensus 338 ~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~ 369 (444)
T TIGR03017 338 NRQRDEMSVLQRDVENAQRAYDAAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22345566666666666666666665543
No 74
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=86.79 E-value=7.1 Score=40.43 Aligned_cols=66 Identities=15% Similarity=0.265 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 019982 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (333)
Q Consensus 50 sE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FK 119 (333)
......+++++++...|.+-+++...|+.+|. ..+.+..++..+....++++++++++++-++.-+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk----~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l 103 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLK----SLETEIASLEAQLIETADDLKKLRKQIADLNARL 103 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 33555666666666666666666666666554 5556666666666666666666666665554433
No 75
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=86.71 E-value=3.1 Score=34.81 Aligned_cols=39 Identities=23% Similarity=0.444 Sum_probs=16.9
Q ss_pred HHhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 42 STRVSDLESEHSAL--RSQLAEKDSRIAELQSQIESIYSSL 80 (333)
Q Consensus 42 atRVs~LEsE~~~L--R~~laEKd~~i~~Lq~rv~~le~aL 80 (333)
..||+.||.++..| ++.+++=.-.|.+++.++..++..+
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444444444444 4444444444444444444444444
No 76
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=86.53 E-value=16 Score=34.20 Aligned_cols=53 Identities=15% Similarity=0.242 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 29 QLDVARKITSIAI--STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 29 QLdvArkIts~A~--atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
=+++..++...+- -.|+.++..|...|.+.+..-.+.+..|+.....++..+.
T Consensus 26 ~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~ 80 (251)
T PF11932_consen 26 AQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVA 80 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444332 2345555555555555555545555555554444444443
No 77
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=86.49 E-value=9.2 Score=40.61 Aligned_cols=13 Identities=23% Similarity=0.465 Sum_probs=6.4
Q ss_pred CccchHHHHHHHHh
Q 019982 265 TRVDGKEFFRQVRN 278 (333)
Q Consensus 265 ~rVDGKEFFRQARs 278 (333)
+-|+|+ ++...+.
T Consensus 614 ~e~~~~-~~~~l~~ 626 (650)
T TIGR03185 614 EEVDEK-HYNLLKP 626 (650)
T ss_pred HhhCHH-HHHHHHH
Confidence 456663 4444443
No 78
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.47 E-value=13 Score=39.18 Aligned_cols=97 Identities=13% Similarity=0.203 Sum_probs=54.6
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH----------HHHHHHH
Q 019982 27 FEQLDVARKITSIAISTRVSDLES-EHSALRSQLAEKDSRIAELQSQIESIYSS-------LS----------DKLGQAQ 88 (333)
Q Consensus 27 yEQLdvArkIts~A~atRVs~LEs-E~~~LR~~laEKd~~i~~Lq~rv~~le~a-------L~----------~rL~~a~ 88 (333)
..||+=-|+--. .+++++|- ++..+|+.+.++-....+|+.....++.+ |+ ..|..-.
T Consensus 327 ~sqleSqr~y~e----~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 327 TSQLESQRKYYE----QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred hhhhhHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777776555 67777776 77777777766655555543333333322 22 2333445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019982 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (333)
Q Consensus 89 ~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 127 (333)
|++.+|.++.+....++||++.-..+.-.=|---++-||
T Consensus 403 E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLq 441 (493)
T KOG0804|consen 403 EENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQ 441 (493)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666677777776655544333333333343
No 79
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=86.44 E-value=14 Score=35.98 Aligned_cols=85 Identities=22% Similarity=0.367 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHH-------hhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 019982 29 QLDVARKITSIAIST-------RVS---DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLS 95 (333)
Q Consensus 29 QLdvArkIts~A~at-------RVs---~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~ 95 (333)
-++|.||=.-+|+.. ||- .|-.....+|.+|.|-...-.+|.+++..||..+. .||+...-|+.+|.
T Consensus 104 D~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~Le 183 (290)
T COG4026 104 DVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLE 183 (290)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888753 221 22233444556665555556666677777776665 55555555555555
Q ss_pred HHHHHHHHHHHHHhhhHH
Q 019982 96 KENEALTNTVRKLQRDVS 113 (333)
Q Consensus 96 kE~~sLa~TvKKL~RDva 113 (333)
++.+-|-.-|-+|..-.+
T Consensus 184 E~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 184 EMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred HHHHhchhHHHHHHHHHH
Confidence 555544444444444433
No 80
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.37 E-value=8 Score=34.12 Aligned_cols=37 Identities=32% Similarity=0.460 Sum_probs=15.3
Q ss_pred HHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLA--EKDSRIAELQSQIESIY 77 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~la--EKd~~i~~Lq~rv~~le 77 (333)
+..-++.|++|...|+..+. |-...|..|++.+..++
T Consensus 91 l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~ 129 (169)
T PF07106_consen 91 LKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELE 129 (169)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444432 33334444444444444
No 81
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=86.29 E-value=5.4 Score=44.07 Aligned_cols=60 Identities=22% Similarity=0.338 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 019982 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLS 95 (333)
Q Consensus 35 kIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~ 95 (333)
|++--||++. -+-|+|+..|+++|.+=-..-..+++||+.||.+|- -.|+.+.+|+++..
T Consensus 10 kvaeeav~gw-ekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i 72 (769)
T PF05911_consen 10 KVAEEAVSGW-EKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKI 72 (769)
T ss_pred HHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 5566676654 466899999999999988888999999999999998 77778888875543
No 82
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=86.23 E-value=17 Score=32.35 Aligned_cols=53 Identities=17% Similarity=0.325 Sum_probs=44.1
Q ss_pred ChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 25 DPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 25 DPyEQLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
.=|||| +|-..++..++..=..|+.+||.....--+.+...++++..+...+.
T Consensus 42 iDFeqL----kien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~ 94 (177)
T PF13870_consen 42 IDFEQL----KIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELE 94 (177)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358898 67788899999888899999998888888888888888887777766
No 83
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=86.20 E-value=17 Score=33.56 Aligned_cols=81 Identities=21% Similarity=0.311 Sum_probs=54.7
Q ss_pred HhhhhhHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 43 TRVSDLESEHSALRSQLA--EKDSR-IAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~la--EKd~~-i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
-=+.+++.|+..|+.+|. +||.. ...++.|+..++..|. ---....+...+|.+||+.|-......-.||..==
T Consensus 62 epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~ 141 (201)
T PF13851_consen 62 EPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKT 141 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888887 55543 2344555655555554 22225567778888888888888888888887766
Q ss_pred HHHHHHH
Q 019982 117 VFRKTLV 123 (333)
Q Consensus 117 ~FKk~Lm 123 (333)
.||-.|+
T Consensus 142 ~~kn~lL 148 (201)
T PF13851_consen 142 GLKNLLL 148 (201)
T ss_pred HHHHHHH
Confidence 6666654
No 84
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.12 E-value=9.9 Score=36.16 Aligned_cols=78 Identities=22% Similarity=0.383 Sum_probs=51.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKER-------LSKENEALTNTVRKLQR 110 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~k-------L~kE~~sLa~TvKKL~R 110 (333)
|--|+-.+|.|..+.+..|.+..+-+..|.++.-.++.+-. .+-..+.+++.. ..+|+..|..-+..+..
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~ 89 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEA 89 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578899999999999999999999988887777665443 444445555544 45577777777777777
Q ss_pred hHHHHHHH
Q 019982 111 DVSKLEVF 118 (333)
Q Consensus 111 DvaKLE~F 118 (333)
.+++|+.=
T Consensus 90 ~i~~l~ee 97 (246)
T PF00769_consen 90 EIARLEEE 97 (246)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777653
No 85
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=86.06 E-value=8.9 Score=30.48 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
..+..+.++++.|..-.+.|...|..|+..|.+|.
T Consensus 35 ~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 35 HMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55568889999999999999999999999999884
No 86
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=86.05 E-value=15 Score=28.79 Aligned_cols=80 Identities=23% Similarity=0.374 Sum_probs=49.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKD-----SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd-----~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
+..++..|+.+...+...+.... ..+...+.-+..|+..+ .....+...+.++-..+-..+....+++.+|
T Consensus 17 ~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i----~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~ 92 (123)
T PF02050_consen 17 AEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAI----QQQQQELERLEQEVEQAREELQEARRERKKL 92 (123)
T ss_dssp HHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666655555555 44444444444444433 3677777788888888888888888888888
Q ss_pred HHHHHHHHh
Q 019982 116 EVFRKTLVQ 124 (333)
Q Consensus 116 E~FKk~Lmq 124 (333)
|.++-.-..
T Consensus 93 e~L~e~~~~ 101 (123)
T PF02050_consen 93 EKLKERRRE 101 (123)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887755443
No 87
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=86.05 E-value=5.1 Score=35.73 Aligned_cols=34 Identities=29% Similarity=0.496 Sum_probs=30.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQI 73 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv 73 (333)
+...+|..++.|...|+.+|.+++..|.+|+...
T Consensus 17 ~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~ 50 (155)
T PF06810_consen 17 APKAKVDKVKEERDNLKTQLKEADKQIKDLKKSA 50 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4788999999999999999999999999999843
No 88
>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=85.85 E-value=2.2 Score=40.48 Aligned_cols=64 Identities=19% Similarity=0.365 Sum_probs=58.2
Q ss_pred CccchHHHHHHHHhccC--HHHHHHHHHHHHHHhhccccHHHHHHhhhhhcCCCChhHHHHHHHhhc
Q 019982 265 TRVDGKEFFRQVRNRLS--YEQFAIFLANVKELNAHKQTKEETLRKTDEVFGPENKDLYTIFEGLIT 329 (333)
Q Consensus 265 ~rVDGKEFFRQARsRLS--YEQFsaFLANIKELNAhkQTREETL~KAeeIFG~~NkdLY~~FegLL~ 329 (333)
+--|..-|.+.++.++. .|-|..||.-.|++=||+-.+.+...+..|+|-. +.||...|...|=
T Consensus 18 t~~DAlsYl~~VK~~f~d~p~kY~~FL~im~d~ka~~iD~~~vi~rv~eLfK~-h~~Ll~gfN~fLP 83 (231)
T KOG4204|consen 18 TLDDALAYLKAVKEAFQDEPEKYDEFLEIMKDFKAQRIDTPGVIARVKELLKG-HPDLLLGFNTFLP 83 (231)
T ss_pred ChHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHcc-CHHHHHHHHhhCc
Confidence 77899999999999886 4679999999999999999999999999999975 8899999987764
No 89
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=85.83 E-value=7.9 Score=39.15 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=30.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
.+..++..||.+...|+....++.-.+.+|+.+++.++..+.
T Consensus 251 ~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~ 292 (498)
T TIGR03007 251 ELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKE 292 (498)
T ss_pred chHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Confidence 455677788888888888777777777777777777776653
No 90
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.78 E-value=6.2 Score=34.15 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=10.2
Q ss_pred HHhhhhhHHHHHHHHHHHH
Q 019982 42 STRVSDLESEHSALRSQLA 60 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~la 60 (333)
.+.+.++|.|+..|+.+++
T Consensus 22 ~s~lr~~E~E~~~l~~el~ 40 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELA 40 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554
No 91
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=85.69 E-value=31 Score=32.71 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019982 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (333)
Q Consensus 50 sE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~-------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~ 121 (333)
.|+..+|.++..-...+..|+.+...|+..+. ..+.........|..|...|-..+....++...|-..|-.
T Consensus 216 ~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~ 294 (312)
T PF00038_consen 216 EELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLA 294 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555444444444444444444443 2222223333444455555555555555555555444433
No 92
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=85.66 E-value=3.7 Score=32.53 Aligned_cols=46 Identities=28% Similarity=0.436 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 019982 69 LQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (333)
Q Consensus 69 Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~F 118 (333)
|+..+..=|. .+.+..+|.++|.+-.-.+.+|||||.-.+.-+|.=
T Consensus 3 l~~~l~EKDe----~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~ 48 (74)
T PF12329_consen 3 LEKKLAEKDE----QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQ 48 (74)
T ss_pred HHHHHHhHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3344444443 344888899999999999999999998888777743
No 93
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=85.36 E-value=14 Score=29.34 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019982 86 QAQADKERLSKENEALTNTVRKL 108 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL 108 (333)
...++|.+|..|+.....-++.|
T Consensus 43 ~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 43 ELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333
No 94
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=85.27 E-value=10 Score=45.77 Aligned_cols=105 Identities=21% Similarity=0.383 Sum_probs=81.4
Q ss_pred hhHHHHHHHHH-----HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 019982 28 EQLDVARKITS-----IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE 99 (333)
Q Consensus 28 EQLdvArkIts-----~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~ 99 (333)
|.++++-.|.. -+..+.=.+||+++..|...|+|......-..+|+-.+...+. .-|....+.+.+|-..|.
T Consensus 1696 e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~ 1775 (1930)
T KOG0161|consen 1696 ELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKK 1775 (1930)
T ss_pred HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44455555544 4566777889999999999999999999999999998888776 778888888999999999
Q ss_pred HHHHHHHHHh---------------hhHHHHHHHHHHHHhhcccccCC
Q 019982 100 ALTNTVRKLQ---------------RDVSKLEVFRKTLVQSLKDDEDA 132 (333)
Q Consensus 100 sLa~TvKKL~---------------RDvaKLE~FKk~LmqSLqeD~~~ 132 (333)
+|..+||-|. ++++|||+=-+.|=.+|..+...
T Consensus 1776 ~LE~~~kdLq~rL~e~E~~a~~~~k~~i~~Learir~LE~~l~~E~~~ 1823 (1930)
T KOG0161|consen 1776 SLERQVKDLQLRLDEAEQAALKGGKKQIAKLEARIRELESELEGEQRR 1823 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHhHhhhh
Confidence 9999998876 45556666666666666555443
No 95
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=85.19 E-value=29 Score=33.50 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=21.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL 80 (333)
.+..++..|+.++..++.++..-...+..+++++..++..+
T Consensus 141 ~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~ 181 (423)
T TIGR01843 141 TLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEEL 181 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666655555555555555555555544444433
No 96
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=85.11 E-value=20 Score=29.63 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019982 67 AELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (333)
Q Consensus 67 ~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 126 (333)
..|++.+...+.-|. ++...|+....+=.+.+......+++|..++..|...+..+..-|
T Consensus 42 ~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 42 QELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555665555 666666666666666666666666666666666666665554444
No 97
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=85.01 E-value=12 Score=34.22 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=29.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQI 73 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv 73 (333)
+..-+.++|.||..|||-|+-|.++..+|+.|+
T Consensus 34 Lr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 34 LRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455678899999999999999999999999985
No 98
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=84.88 E-value=21 Score=38.22 Aligned_cols=38 Identities=18% Similarity=0.386 Sum_probs=19.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le 77 (333)
.+...+..|+.++.+|...|.........|+.++..+.
T Consensus 161 ~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~ 198 (546)
T PF07888_consen 161 QLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELT 198 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555445555554444433
No 99
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=84.71 E-value=25 Score=38.01 Aligned_cols=20 Identities=40% Similarity=0.506 Sum_probs=12.4
Q ss_pred HHHhhhhhHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLA 60 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~la 60 (333)
...||..||..+..|+.+++
T Consensus 48 ~~~~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 48 DISRVQELERSLSELKNQMA 67 (617)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34566666666666666665
No 100
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=84.70 E-value=11 Score=40.13 Aligned_cols=36 Identities=17% Similarity=0.340 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 46 s~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
..||.|+..|+.++.+-...+...+++...|.....
T Consensus 160 ~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~k 195 (546)
T PF07888_consen 160 EQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQK 195 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443
No 101
>PRK10698 phage shock protein PspA; Provisional
Probab=84.56 E-value=17 Score=34.11 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 88 QADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 88 ~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
.+....|..+.+....+|.+|..++.+|+
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~ 126 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELE 126 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666665554
No 102
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=84.26 E-value=25 Score=36.68 Aligned_cols=41 Identities=32% Similarity=0.448 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHhhhHHH---------HHHHHHHHHhhcccc
Q 019982 89 ADKERLSKENEALTN--------TVRKLQRDVSK---------LEVFRKTLVQSLKDD 129 (333)
Q Consensus 89 ~e~~kL~kE~~sLa~--------TvKKL~RDvaK---------LE~FKk~LmqSLqeD 129 (333)
+-..+|..|...+++ ..+.|+++..| +|.|+++|-+++.+.
T Consensus 98 ~~~~ql~~~~~~~~~~i~e~~~~~~~el~~~~~~~Ll~~~~~~~e~f~e~l~~~~~~s 155 (448)
T COG1322 98 ESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPLREVLEKFREQLEQRIHES 155 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444 34556666655 788888887766554
No 103
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=84.00 E-value=5.1 Score=39.43 Aligned_cols=74 Identities=28% Similarity=0.377 Sum_probs=51.6
Q ss_pred CChhhhHHHHHHHHHHH-----------------------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 24 SDPFEQLDVARKITSIA-----------------------ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (333)
Q Consensus 24 sDPyEQLdvArkIts~A-----------------------~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL 80 (333)
.||.-+-+.++++ |.| .-.++..+|.+....+.+|.++...+.+|++++..|+..+
T Consensus 180 ~~p~F~~e~v~~~-S~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~ 258 (344)
T PF12777_consen 180 KNPDFNPEKVRKA-SKAAGSLCKWVRAMVKYYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEY 258 (344)
T ss_dssp TSTTSSHHHHHHH--TTHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHH-hhcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777776 444 2246677777888888888888888888888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019982 81 SDKLGQAQADKERLSKENEALT 102 (333)
Q Consensus 81 ~~rL~~a~~e~~kL~kE~~sLa 102 (333)
. .+..++.+|..+-+...
T Consensus 259 ~----~~~~e~~~l~~~~~~~~ 276 (344)
T PF12777_consen 259 E----EAQKEKQELEEEIEETE 276 (344)
T ss_dssp H----HHHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHHHHH
Confidence 6 66666666666554433
No 104
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=83.95 E-value=13 Score=42.23 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHhhhhhcCC
Q 019982 282 YEQFAIFLANVKELNAHKQTKEETLRKTDEVFGP 315 (333)
Q Consensus 282 YEQFsaFLANIKELNAhkQTREETL~KAeeIFG~ 315 (333)
.|+|.....-..+|+.++++-++.+.+..+.+..
T Consensus 969 iee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~ 1002 (1163)
T COG1196 969 IEEYEEVEERYEELKSQREDLEEAKEKLLEVIEE 1002 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444333
No 105
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.66 E-value=11 Score=43.32 Aligned_cols=71 Identities=4% Similarity=0.231 Sum_probs=33.6
Q ss_pred hhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019982 45 VSDLESEHSALRSQLAEK--DSRIAELQSQIESIYSSLS--------DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEK--d~~i~~Lq~rv~~le~aL~--------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (333)
+..++.+-..|+..|.-+ .+.+.+++.++..|+..+. .-+....++.+.|..++..|..++++|.-+|+.
T Consensus 1007 l~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~ 1086 (1311)
T TIGR00606 1007 IDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKH 1086 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444433 4445555555555555544 222333444445555555555555555555554
Q ss_pred H
Q 019982 115 L 115 (333)
Q Consensus 115 L 115 (333)
|
T Consensus 1087 l 1087 (1311)
T TIGR00606 1087 F 1087 (1311)
T ss_pred H
Confidence 4
No 106
>TIGR02559 HrpB7 type III secretion protein HrpB7. This family of genes is found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=83.57 E-value=11 Score=34.48 Aligned_cols=62 Identities=16% Similarity=0.245 Sum_probs=52.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 019982 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENE 99 (333)
Q Consensus 38 s~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~------~rL~~a~~e~~kL~kE~~ 99 (333)
--.+.-+|..+|.++..|++-|..|...|+..+..|..++..+. ++|..+.|-......|-+
T Consensus 81 r~vl~~~~~~aE~~~aaa~~al~~~~~~laa~~r~iaRn~a~id~c~eR~~~l~ra~ea~~edA~dEE 148 (158)
T TIGR02559 81 RDVLEAHLGAAEQAEAAARAALQALAAALAAKKREIARLDAQIDVCRERAERLRRAGEAAREEALEEE 148 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 33457789999999999999999999999999999999999988 777777777666555433
No 107
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=83.43 E-value=11 Score=40.69 Aligned_cols=98 Identities=23% Similarity=0.285 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHH--------HhhhhhHHHHHHHHHHHHHH------H--HHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 019982 29 QLDVARKITSIAIS--------TRVSDLESEHSALRSQLAEK------D--SRIAELQSQIESIYSSLSDKLGQ-AQADK 91 (333)
Q Consensus 29 QLdvArkIts~A~a--------tRVs~LEsE~~~LR~~laEK------d--~~i~~Lq~rv~~le~aL~~rL~~-a~~e~ 91 (333)
+.+|+-|+.-+-+. +||-.||.|+..||.+++.- + ..|+.+...+.+.|...+ +|.. .....
T Consensus 227 dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~-~L~~di~~~~ 305 (629)
T KOG0963|consen 227 DEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIA-QLSNDIERLE 305 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHH-HHHHHHHHHH
Confidence 45566666554443 68888999999999887631 1 223334444444444332 2222 22334
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019982 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (333)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 127 (333)
.-|++|+...+++|+.|.+.+...-.-...|-.-|+
T Consensus 306 ~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 306 ASLVEEREKHKAQISALEKELKAKISELEELKEKLN 341 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556777777788887777777664444444443333
No 108
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=83.39 E-value=5 Score=30.77 Aligned_cols=38 Identities=34% Similarity=0.595 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019982 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (333)
Q Consensus 66 i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (333)
|.+|+.++..++..+. .+.+|+..|..+|-++++.|-+
T Consensus 2 i~elEn~~~~~~~~i~-----------tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 2 IDELENELPRIESSIN-----------TVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554432 3444444444444444444433
No 109
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=83.38 E-value=11 Score=41.87 Aligned_cols=73 Identities=26% Similarity=0.433 Sum_probs=42.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHH--HHHHHH------------HHHHHHHHH
Q 019982 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIE-------------SIYSSLS--DKLGQA------------QADKERLSK 96 (333)
Q Consensus 44 RVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~-------------~le~aL~--~rL~~a------------~~e~~kL~k 96 (333)
+|+.|-..+..|...|.+||+.+.++.+|+. .||.++. .|+... .++...+.+
T Consensus 393 ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~ 472 (775)
T PF10174_consen 393 KINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQK 472 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555566666666666666666665 3444444 333322 345566667
Q ss_pred HHHHHHHHHHHHhhhHHHHH
Q 019982 97 ENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 97 E~~sLa~TvKKL~RDvaKLE 116 (333)
|+..|-.+|..|+.+|+-.+
T Consensus 473 e~~~lk~~~~~LQ~eLsEk~ 492 (775)
T PF10174_consen 473 ELKELKAKLESLQKELSEKE 492 (775)
T ss_pred HHHHHHHHHHHHhhhhHHHH
Confidence 77777777777777766544
No 110
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=83.37 E-value=12 Score=36.59 Aligned_cols=80 Identities=23% Similarity=0.318 Sum_probs=55.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAE-----LQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ----RDV 112 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~-----Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~----RDv 112 (333)
..|+.-|--|-.-+|.||--+ +.+. -.+|.+++|..+. ...|||.+|..||++|-..-+.|. .=+
T Consensus 58 r~RL~HLS~EEK~~RrKLKNR--VAAQtaRDrKKaRm~eme~~i~----dL~een~~L~~en~~Lr~~n~~L~~~n~el~ 131 (292)
T KOG4005|consen 58 RRRLDHLSWEEKVQRRKLKNR--VAAQTARDRKKARMEEMEYEIK----DLTEENEILQNENDSLRAINESLLAKNHELD 131 (292)
T ss_pred HHhhcccCHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 456677777777777777432 2221 2456777776654 888999999999999988777664 345
Q ss_pred HHHHHHHHHHHhhcc
Q 019982 113 SKLEVFRKTLVQSLK 127 (333)
Q Consensus 113 aKLE~FKk~LmqSLq 127 (333)
..||-.+..||.+=+
T Consensus 132 ~~le~~~~~l~~~~~ 146 (292)
T KOG4005|consen 132 SELELLRQELAELKQ 146 (292)
T ss_pred HHHHHHHHHHHhhHH
Confidence 678888888887643
No 111
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=83.34 E-value=12 Score=38.72 Aligned_cols=78 Identities=18% Similarity=0.289 Sum_probs=50.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---------------------DKLGQAQADKERLSKEN 98 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---------------------~rL~~a~~e~~kL~kE~ 98 (333)
+...+|..|+.++..|+.++++-+..+..++.++.-|+..-. +-+....++..+|..+.
T Consensus 68 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (525)
T TIGR02231 68 PDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTED 147 (525)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577788888888888887777777777777766655321 11222234556666777
Q ss_pred HHHHHHHHHHhhhHHHHHH
Q 019982 99 EALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 99 ~sLa~TvKKL~RDvaKLE~ 117 (333)
..|....++|.+.+++|+.
T Consensus 148 ~~~~~~~~~~~~~l~~l~~ 166 (525)
T TIGR02231 148 REAERRIRELEKQLSELQN 166 (525)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777744
No 112
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=83.32 E-value=19 Score=32.12 Aligned_cols=71 Identities=24% Similarity=0.361 Sum_probs=40.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (333)
+.+....|+.|...||..-.+=+......|+||+.||.... .-|....+++.++ +..+...|-.|+.++.-
T Consensus 64 lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~---~e~~~~~ve~L~~ql~~ 137 (140)
T PF10473_consen 64 LTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQL---KEESKSAVEMLQKQLKE 137 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 34555667777777774433333344445556888887666 4455666664444 34455566666655543
No 113
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=83.26 E-value=8 Score=35.46 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=22.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQ 70 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq 70 (333)
+.-.++.+|+.++..++.++++-...|.++.
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888888777666666664
No 114
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=83.18 E-value=12 Score=42.70 Aligned_cols=37 Identities=30% Similarity=0.428 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019982 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (333)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 128 (333)
+.+..++....+-.+-|.+.|.|||..-..|-..+++
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~ 426 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREELNE 426 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777788888888888888855555444443
No 115
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=83.17 E-value=8.5 Score=33.05 Aligned_cols=52 Identities=27% Similarity=0.379 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 30 LDVARKITSIAISTRV--------SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 30 LdvArkIts~A~atRV--------s~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
|||||..=+--+--|. ..|+-|+..||..|+-|+.++..+.++|...+.-|+
T Consensus 14 lD~aRq~e~~FlqKr~~LS~~kpe~~lkEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~ 73 (106)
T PF11594_consen 14 LDVARQMEAFFLQKRFELSAYKPEQVLKEEINELKEELQRKEQLLQKHYEKIDYWEKLLS 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999888777765 368899999999999999999999999998886554
No 116
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=82.65 E-value=22 Score=37.35 Aligned_cols=85 Identities=29% Similarity=0.406 Sum_probs=57.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHH-------HHHH
Q 019982 37 TSIAISTRVSDLESEHSALRSQLAE------------------------KDSRIAELQSQIESIYSSLS-------DKLG 85 (333)
Q Consensus 37 ts~A~atRVs~LEsE~~~LR~~laE------------------------Kd~~i~~Lq~rv~~le~aL~-------~rL~ 85 (333)
..+-+-.||.+||.|-+-|-.||.+ --.+|.-||..|+.|-..|. .+|.
T Consensus 202 lvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~ 281 (552)
T KOG2129|consen 202 LVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLM 281 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778999999999998887732 11345555555555544444 5555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lmq 124 (333)
+-.+|....-+||..| -+||.+.|.|=|++-|+|-.
T Consensus 282 qy~~Ee~~~reen~rl---QrkL~~e~erRealcr~lsE 317 (552)
T KOG2129|consen 282 QYRAEEVDHREENERL---QRKLINELERREALCRMLSE 317 (552)
T ss_pred HHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHhhh
Confidence 5555555555555555 47999999999999988854
No 117
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=82.64 E-value=9.6 Score=40.85 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=22.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhcccccCC
Q 019982 102 TNTVRKLQRDVSKLEVFRKTLVQSLKDDEDA 132 (333)
Q Consensus 102 a~TvKKL~RDvaKLE~FKk~LmqSLqeD~~~ 132 (333)
......|+||+.-.+..=..|++.+++-.-.
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~ 405 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQAASR 405 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556678888888777777888888776443
No 118
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=82.59 E-value=6.5 Score=37.40 Aligned_cols=61 Identities=26% Similarity=0.405 Sum_probs=32.4
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 51 EHSALRSQLAE---KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 51 E~~~LR~~laE---Kd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
+...|+.++.- ..+.+..+.+....|+.+++ .-..+-+++++.++.|-.++..+++..++|
T Consensus 135 ~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~----~~~~~Le~~~~~~~al~Kq~e~~~~EydrL 198 (216)
T KOG1962|consen 135 ENEALKKQLENSSKLEEENDKLKADLEKLETELE----KKQKKLEKAQKKVDALKKQSEGLQDEYDRL 198 (216)
T ss_pred HHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 45555555442 12233333344444443333 445555666667777777777777766665
No 119
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=82.58 E-value=9.6 Score=35.00 Aligned_cols=21 Identities=43% Similarity=0.615 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHH
Q 019982 95 SKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 95 ~kE~~sLa~TvKKL~RDvaKL 115 (333)
.+.|+.|..-+.||..|+.+|
T Consensus 94 ~~~N~~L~~dl~klt~~~~~l 114 (182)
T PF15035_consen 94 RKANEALQEDLQKLTQDWERL 114 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666663
No 120
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=82.48 E-value=21 Score=35.49 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019982 52 HSALRSQLAEKDSRIAELQSQ 72 (333)
Q Consensus 52 ~~~LR~~laEKd~~i~~Lq~r 72 (333)
+..||++|.+-+..+++|..+
T Consensus 256 i~~l~~~l~~le~~l~~l~~~ 276 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQR 276 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555443
No 121
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=82.29 E-value=14 Score=39.80 Aligned_cols=11 Identities=18% Similarity=0.522 Sum_probs=4.7
Q ss_pred hHHHHHHHHHH
Q 019982 111 DVSKLEVFRKT 121 (333)
Q Consensus 111 DvaKLE~FKk~ 121 (333)
.|+||+.+-.+
T Consensus 395 ni~kL~~~v~~ 405 (594)
T PF05667_consen 395 NIAKLQALVEA 405 (594)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 122
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=82.19 E-value=15 Score=40.64 Aligned_cols=70 Identities=26% Similarity=0.403 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 019982 31 DVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALT 102 (333)
Q Consensus 31 dvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa 102 (333)
+|=.||+. +..++..+-+|...|...|.+|++.|.+|.+.-+.+|..+. .||-.++-||.-|.=|--.|.
T Consensus 89 ~le~~l~e--~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~ 161 (769)
T PF05911_consen 89 ELEAKLAE--LSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLS 161 (769)
T ss_pred HHHHHHHH--HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 35577788888999999999999999999999999998776 788777777777766555544
No 123
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=82.05 E-value=12 Score=40.87 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=37.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVR 106 (333)
Q Consensus 38 s~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvK 106 (333)
-.+|..||..|..+...-..+|.+-.+.+..|+++.+.|. +|+..|.+.+++|.+--+.+.+.+.
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~La----eR~e~a~d~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLA----ERYEEAKDKQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666555555555555555554444443 5555666666666665555544443
No 124
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=82.00 E-value=6.8 Score=35.51 Aligned_cols=53 Identities=26% Similarity=0.357 Sum_probs=44.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKE 92 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~------~rL~~a~~e~~ 92 (333)
-+.-|+..+|.++..|++.|..|.+.|+..+..|..++..+. ++|..+.+...
T Consensus 83 ~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~ea~~ 141 (158)
T PF09486_consen 83 VLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAEAAA 141 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhH
Confidence 356789999999999999999999999999999999998887 45555444443
No 125
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.00 E-value=24 Score=40.80 Aligned_cols=52 Identities=12% Similarity=0.227 Sum_probs=36.7
Q ss_pred HHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 30 LDVARKITS-IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 30 LdvArkIts-~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
+.++.+|.. -.|..++..|..++..++..+.+.+..+..|+.++..++..+.
T Consensus 874 lkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1311)
T TIGR00606 874 LQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE 926 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 344444443 3566677777777888888888888888888888887777775
No 126
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=81.96 E-value=24 Score=33.51 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=14.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLA 60 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~la 60 (333)
.|..||-.||.+-..|..++.
T Consensus 15 ~YIekVr~LE~~N~~Le~~i~ 35 (312)
T PF00038_consen 15 SYIEKVRFLEQENKRLESEIE 35 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHH
Confidence 366777777777777776665
No 127
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=81.87 E-value=12 Score=41.10 Aligned_cols=60 Identities=18% Similarity=0.316 Sum_probs=39.0
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 53 SALRSQ-LAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 53 ~~LR~~-laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
..||.+ +..-+..-.+|++|+..|..... +-+++..+|.+|++.|..+.++|..-+...+
T Consensus 546 ~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e----~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~ 606 (717)
T PF10168_consen 546 KVLREEYIEKQDLAREEIQRRVKLLKQQKE----QQLKELQELQEERKSLRESAEKLAERYEEAK 606 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777 44555667889999998887776 4455555566666666666666655444333
No 128
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=81.62 E-value=28 Score=39.69 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019982 90 DKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (333)
Q Consensus 90 e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lmq 124 (333)
+...|......+...++.+.+++.++..=...+.+
T Consensus 447 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1163)
T COG1196 447 ELEELEEQLEELRDRLKELERELAELQEELQRLEK 481 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555666666666666665554444443
No 129
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=81.53 E-value=24 Score=35.29 Aligned_cols=40 Identities=33% Similarity=0.543 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019982 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (333)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lmq 124 (333)
+++.+-.++-..+..||..|- +||.+++++-|++=|+|--
T Consensus 254 ~k~~~~~~eek~ireEN~rLq---r~L~~E~erreal~R~lse 293 (310)
T PF09755_consen 254 EKMAQYLQEEKEIREENRRLQ---RKLQREVERREALCRHLSE 293 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 444455556666777777775 5899999999999998854
No 130
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=81.39 E-value=13 Score=32.53 Aligned_cols=87 Identities=25% Similarity=0.376 Sum_probs=56.4
Q ss_pred HHHhcCCCChhhhHHH---------H--HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 17 EVLQVLPSDPFEQLDV---------A--RKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLG 85 (333)
Q Consensus 17 eilaVLPsDPyEQLdv---------A--rkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~ 85 (333)
|++.-|=+.|+-.|-. | -.-..++|..|+...|.+++++-..+.|+....+...+.++.++ .|.
T Consensus 19 ~~leklds~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~-----els 93 (131)
T PF10158_consen 19 EVLEKLDSRPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVN-----ELS 93 (131)
T ss_pred HHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence 5788887777766432 1 11235788889999999999999999988887777666666544 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019982 86 QAQADKERLSKENEALTNTVRKL 108 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL 108 (333)
..+.....|.++.-.+..++..+
T Consensus 94 ~~L~~~~~lL~~~v~~ie~LN~~ 116 (131)
T PF10158_consen 94 QQLSRCQSLLNQTVPSIETLNEI 116 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555555555554444444433
No 131
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=80.97 E-value=44 Score=30.42 Aligned_cols=102 Identities=20% Similarity=0.240 Sum_probs=56.2
Q ss_pred ChhhhHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 019982 25 DPFEQLDVARKITSIAIS---TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSKE 97 (333)
Q Consensus 25 DPyEQLdvArkIts~A~a---tRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~----~rL~~a~~e~~kL~kE 97 (333)
||...|+.+.+=..-+|. .-|...-+....|..++.+-...+.++++++ +.+|. +--+.|+.++..+..+
T Consensus 23 DP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A---~~Al~~g~edLAr~al~~k~~~e~~ 99 (221)
T PF04012_consen 23 DPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQA---ELALAAGREDLAREALQRKADLEEQ 99 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 676666665433222221 2222333333444445544445555544443 33444 3335677777777777
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019982 98 NEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (333)
Q Consensus 98 ~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (333)
...|..++..+...|.+|+..-+.|-..|.+=
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~ 131 (221)
T PF04012_consen 100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEEL 131 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776666666555544
No 132
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=80.84 E-value=13 Score=35.05 Aligned_cols=68 Identities=28% Similarity=0.402 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 49 EsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
.+||-.||.+|.|-.........++..|..++. .-|..+..|......|...|-..|-+|..++++|.
T Consensus 30 ~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr 100 (202)
T PF06818_consen 30 DSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELR 100 (202)
T ss_pred HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHH
Confidence 355666666666665555555666666655555 44557777888888888888888888888888774
No 133
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=80.76 E-value=15 Score=42.86 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=36.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
..|+..|+.++..|+.++++.+..+..|+.++..|+.++.
T Consensus 741 ~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~ 780 (1353)
T TIGR02680 741 LRRIAELDARLAAVDDELAELARELRALGARQRALADELA 780 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999988876
No 134
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=80.71 E-value=17 Score=36.82 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=53.5
Q ss_pred HhhhhhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH---HHH
Q 019982 43 TRVSDLESEHSALRSQLAEK--------------DSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE---ALT 102 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~laEK--------------d~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~---sLa 102 (333)
-+|-.|..++..|++++.+- +....+|+.++..++..+. .++....++.+++..+-. .+.
T Consensus 275 P~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 354 (498)
T TIGR03007 275 PDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVE 354 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 35667777777777776542 1223445555555555444 333344444444444333 345
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhccccc
Q 019982 103 NTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (333)
Q Consensus 103 ~TvKKL~RDvaKLE~FKk~LmqSLqeD~ 130 (333)
.+...|+||+.-.+..=..|++.+++-.
T Consensus 355 ~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 355 AELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999888888888888887644
No 135
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.43 E-value=12 Score=40.25 Aligned_cols=91 Identities=24% Similarity=0.406 Sum_probs=59.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL---- 115 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL---- 115 (333)
++.++...+|..+..|...+.+|+..++-||.....|-..+- .=.-.-+|.++...||+.|-.+|-+++-++++|
T Consensus 284 ~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie-~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~v 362 (581)
T KOG0995|consen 284 QMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE-LQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEV 362 (581)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888899999999999999999999999998887665 112223333444444444444444444444432
Q ss_pred -------HHHHHHHHhhcccccC
Q 019982 116 -------EVFRKTLVQSLKDDED 131 (333)
Q Consensus 116 -------E~FKk~LmqSLqeD~~ 131 (333)
+.|.+.|-.-+.+-+.
T Consensus 363 w~~~l~~~~~f~~le~~~~~~~~ 385 (581)
T KOG0995|consen 363 WELKLEIEDFFKELEKKFIDLNS 385 (581)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666665555443
No 136
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=80.39 E-value=16 Score=44.07 Aligned_cols=37 Identities=32% Similarity=0.504 Sum_probs=31.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
..+|.+||++|...|.+|+++|++|..++..+...++
T Consensus 1309 ~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k 1345 (1822)
T KOG4674|consen 1309 YEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIK 1345 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467789999999999999999999999888885555
No 137
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=80.32 E-value=7.7 Score=42.19 Aligned_cols=55 Identities=29% Similarity=0.486 Sum_probs=39.0
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019982 55 LRSQLA----EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 55 LR~~la----EKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (333)
||.||. ||++++..|.+++..+.......|.....+.++|..||.-|.+-+|.+.
T Consensus 2 LRdkL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s 60 (654)
T PF09798_consen 2 LRDKLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLS 60 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455543 7888888888888887776665555666666777777777777776654
No 138
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=79.87 E-value=28 Score=37.27 Aligned_cols=99 Identities=23% Similarity=0.326 Sum_probs=58.8
Q ss_pred hhhhHHHHHHHHHHHHHHhhhh-----------hHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHH------HHHH
Q 019982 26 PFEQLDVARKITSIAISTRVSD-----------LESEHSALRSQLAEKDSR-I--AELQSQIESIYSSLS------DKLG 85 (333)
Q Consensus 26 PyEQLdvArkIts~A~atRVs~-----------LEsE~~~LR~~laEKd~~-i--~~Lq~rv~~le~aL~------~rL~ 85 (333)
-|-||-||+|+=..-+-.||.. |+.|+..++..|..=..+ . .+-++.|..|+..|. .|+.
T Consensus 196 ~F~~lsL~f~~D~~TLe~R~~~~eR~RdlaEeNl~kEi~~~~~~l~~l~~lc~~d~e~~e~~~kl~~~l~~l~~~~~rvs 275 (538)
T PF05781_consen 196 EFLRLSLGFKCDRFTLEKRLKLEERSRDLAEENLKKEIENCLKLLESLAPLCWEDNESREIIQKLQKSLDVLHQCATRVS 275 (538)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3779999999999999999864 555666666555422222 1 222333334443333 3332
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHhh
Q 019982 86 -------QAQADKERLSKENEALTNTVRKLQR----DVSKLEVFRKTLVQS 125 (333)
Q Consensus 86 -------~a~~e~~kL~kE~~sLa~TvKKL~R----DvaKLE~FKk~LmqS 125 (333)
++.|| .++.+--....+-|..|.| +-+.|+-|||.|+|.
T Consensus 276 s~AE~lGAv~QE-~R~SkAvevM~qhvenLkr~~~kehaeL~E~k~~l~qn 325 (538)
T PF05781_consen 276 SRAEMLGAVHQE-SRVSKAVEVMIQHVENLKRMYEKEHAELEELKKLLLQN 325 (538)
T ss_pred HHHHHhcchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 22222 2345555556666777766 455699999998764
No 139
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=79.80 E-value=11 Score=28.37 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019982 61 EKDSRIAELQSQIESIYSSL 80 (333)
Q Consensus 61 EKd~~i~~Lq~rv~~le~aL 80 (333)
-|...|.+|+.+|..|+...
T Consensus 23 RKk~~~~~Le~~~~~L~~en 42 (64)
T PF00170_consen 23 RKKQYIEELEEKVEELESEN 42 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHH
Confidence 35667777887777666443
No 140
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=79.76 E-value=18 Score=29.44 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (333)
Q Consensus 48 LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~ 103 (333)
|=.+-..|+.+|.+|+++|..|..-+.+|..-|+ .-.+-+.+|..+...+..
T Consensus 3 Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLi----KYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLI----KYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 3346678999999999999999988888886665 777777777777766654
No 141
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=79.65 E-value=10 Score=37.92 Aligned_cols=74 Identities=22% Similarity=0.290 Sum_probs=55.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~-~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
.-+..+|..|+..||++|.|=.--|.-|+++++....... .-.+...+|.++|..+-..+-.+.+-|.|||.-+
T Consensus 78 re~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~ 152 (319)
T PF09789_consen 78 REQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSL 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999999999999999999998876655 1122333677777777777777777777776544
No 142
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=79.60 E-value=33 Score=36.77 Aligned_cols=88 Identities=18% Similarity=0.366 Sum_probs=50.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHH-HHHHHHH
Q 019982 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------------DKLGQAQADKERLSKEN-EALTNTV 105 (333)
Q Consensus 44 RVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~-----------------~rL~~a~~e~~kL~kE~-~sLa~Tv 105 (333)
|.+.||+|+.-++.....=+..+..|......|..+|. .+....++|.+-+...+ ..+-.+-
T Consensus 149 ~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~ 228 (546)
T KOG0977|consen 149 RLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEER 228 (546)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 44555555555555555555555555555555555444 22222333333332222 2345677
Q ss_pred HHHhhhH--HHHHHHHHHHHhhcccccC
Q 019982 106 RKLQRDV--SKLEVFRKTLVQSLKDDED 131 (333)
Q Consensus 106 KKL~RDv--aKLE~FKk~LmqSLqeD~~ 131 (333)
++..||. ..=+-||-.|.++|+|=-.
T Consensus 229 ~~~~rd~t~~~r~~F~~eL~~Ai~eiRa 256 (546)
T KOG0977|consen 229 RKARRDTTADNREYFKNELALAIREIRA 256 (546)
T ss_pred HHHhhcccccchHHHHHHHHHHHHHHHH
Confidence 8889998 7789999999999987543
No 143
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=79.58 E-value=18 Score=38.89 Aligned_cols=34 Identities=12% Similarity=0.327 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (333)
Q Consensus 47 ~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL 80 (333)
.||.+...|+....++.-.+.+|+.++..++.++
T Consensus 299 ~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i 332 (754)
T TIGR01005 299 ELRATIADLSTTMLANHPRVVAAKSSLADLDAQI 332 (754)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Confidence 3344444444444344444444444444444443
No 144
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=79.56 E-value=12 Score=39.12 Aligned_cols=48 Identities=25% Similarity=0.287 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-----HHHHHHHHhhccccc
Q 019982 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKL-----EVFRKTLVQSLKDDE 130 (333)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL-----E~FKk~LmqSLqeD~ 130 (333)
.|....++.++|.+|.+.+...+.++...+.+. +.|.+.+..-|++=.
T Consensus 340 ~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~L~ 392 (563)
T TIGR00634 340 QLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQELKALA 392 (563)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344445566777778888888888888888777 778888877776643
No 145
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=79.46 E-value=36 Score=30.94 Aligned_cols=48 Identities=23% Similarity=0.273 Sum_probs=29.3
Q ss_pred hHHHHhcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 019982 15 PEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKD 63 (333)
Q Consensus 15 p~eilaVLPsDPyEQLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd 63 (333)
|..+|--.=-|--++|.=+++-+..+++.+ ..||.++..+...+.+..
T Consensus 24 P~~~l~q~ird~e~~l~~a~~~~a~~~a~~-~~le~~~~~~~~~~~~~~ 71 (221)
T PF04012_consen 24 PEKMLEQAIRDMEEQLRKARQALARVMANQ-KRLERKLDEAEEEAEKWE 71 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 556665555666777777777666665543 456666666665555433
No 146
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=79.41 E-value=24 Score=38.29 Aligned_cols=75 Identities=24% Similarity=0.363 Sum_probs=51.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhHH
Q 019982 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERL-------SKENEALTNTVRKLQRDVS 113 (333)
Q Consensus 44 RVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL-------~kE~~sLa~TvKKL~RDva 113 (333)
|=..|+.|+.+||..+.+-|..|..++..++.-|.++. +++..+...+.=| ..+...|..-.|+|+.-|.
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~ 159 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVE 159 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66789999999999999999999999999999998887 4444444443323 3344444445555555444
Q ss_pred HHHHH
Q 019982 114 KLEVF 118 (333)
Q Consensus 114 KLE~F 118 (333)
.|+..
T Consensus 160 ~~q~~ 164 (632)
T PF14817_consen 160 QLQDI 164 (632)
T ss_pred HHHHH
Confidence 44433
No 147
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=79.07 E-value=64 Score=31.20 Aligned_cols=41 Identities=22% Similarity=0.399 Sum_probs=23.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
+..+...++++...|+.+++.-...+..++.++..++..+.
T Consensus 135 ~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~ 175 (423)
T TIGR01843 135 FESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLE 175 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555566666665555556666665555555554
No 148
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=78.96 E-value=18 Score=40.18 Aligned_cols=43 Identities=26% Similarity=0.300 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019982 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (333)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lmq 124 (333)
..+.+|+|+++.|..|-+++.+.+-.+++|=.||-+|+-.|-+
T Consensus 209 kermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~ 251 (916)
T KOG0249|consen 209 KERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRG 251 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4566899999999999999999999999988888888866654
No 149
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=78.91 E-value=16 Score=29.94 Aligned_cols=63 Identities=24% Similarity=0.364 Sum_probs=47.8
Q ss_pred CCCChHHHHhcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (333)
Q Consensus 11 ~f~Lp~eilaVLPsDPyEQLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL 80 (333)
..+||++|...+ .++...+...|..--...|+.+...+.+.+.+-+....++.+++..++.++
T Consensus 56 ~~~lP~~l~~~~-------~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~ 118 (120)
T PF11740_consen 56 APDLPEALQDAL-------AELMARLWEAAQEEAEEELEAARAELEQERAAAEAELAEAEAQAEELEAEL 118 (120)
T ss_pred ccCCChhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666654422 467788888888888888888888888888888888888888888887665
No 150
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=78.74 E-value=27 Score=32.89 Aligned_cols=58 Identities=17% Similarity=0.230 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTV 105 (333)
Q Consensus 48 LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~Tv 105 (333)
|+.|+..||.-+..=++....|..+...+|..-+ +++....++|.||.-|.+-|....
T Consensus 65 l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~ 125 (193)
T PF14662_consen 65 LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRS 125 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHH
Confidence 3444444444444444444444444444444444 333333444444444444333333
No 151
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=78.74 E-value=31 Score=27.40 Aligned_cols=8 Identities=25% Similarity=0.617 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 019982 67 AELQSQIE 74 (333)
Q Consensus 67 ~~Lq~rv~ 74 (333)
..|+.||.
T Consensus 7 ~~LE~ki~ 14 (72)
T PF06005_consen 7 EQLEEKIQ 14 (72)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 152
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=78.68 E-value=58 Score=30.51 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (333)
Q Consensus 28 EQLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~ 78 (333)
.++|=+..+..-.+..+.. ...++..+-.+-.+-...+..|+++++.|+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~-sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~ 70 (251)
T PF11932_consen 21 ATLDQAQQVQQQWVQAAQQ-SQKRIDQWDDEKQELLAEYRQLEREIENLEV 70 (251)
T ss_pred ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554444422 2224444444444444444444444444443
No 153
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=78.61 E-value=7.2 Score=40.73 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=40.4
Q ss_pred ChhhhHHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 25 DPFEQLDVARKITSI-AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 25 DPyEQLdvArkIts~-A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
+|.+|+++=-.+..+ .+...+..+..+...++++|.+......++++++..++.++.
T Consensus 142 ~~~~~~~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ 199 (563)
T TIGR00634 142 RPDEQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLE 199 (563)
T ss_pred CHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 888997777776653 467777777777777777777766666666666666665554
No 154
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=78.54 E-value=11 Score=29.29 Aligned_cols=46 Identities=15% Similarity=0.414 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 68 ~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
++++|+..+|..+ ..-.++..+|-+-...+...++.++.++.+|+.
T Consensus 3 ~i~e~l~~ie~~l----~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 3 DIKEKLNRIETKL----DNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555322 233334444444444455556777777777765
No 155
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=78.17 E-value=30 Score=26.89 Aligned_cols=56 Identities=30% Similarity=0.395 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019982 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 46 s~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (333)
+.||+||.. |..+-.+|. ++-...-++..||..+...|..|..|-+.|-.-+..|.
T Consensus 4 saL~~Eira-------kQ~~~eEL~-kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 4 SALEAEIRA-------KQAIQEELT-KVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467777643 444445554 45544444558888998888888877777766665543
No 156
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=78.11 E-value=35 Score=37.23 Aligned_cols=86 Identities=22% Similarity=0.375 Sum_probs=60.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS----KL 115 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva----KL 115 (333)
.+-.++..||.-+.+|.....+=++.+.+|+..++.|+..|. +++.-.......-+|-..+-..+.+|++.|. +.
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~-~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~v 497 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELE-RFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRV 497 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788888888888888878888888888888887774 5555555666666676777777777776664 46
Q ss_pred HHHHHHHHhhc
Q 019982 116 EVFRKTLVQSL 126 (333)
Q Consensus 116 E~FKk~LmqSL 126 (333)
|-+|+.|-+-.
T Consensus 498 e~L~~~l~~l~ 508 (652)
T COG2433 498 EELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHH
Confidence 66666665544
No 157
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=78.10 E-value=15 Score=35.39 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=31.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
-.+.|.++..|+..+..+|+.|..||+.+-+.|..|.
T Consensus 69 q~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLt 105 (272)
T KOG4552|consen 69 QQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILT 105 (272)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3556778888888888899999999999888888887
No 158
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=78.08 E-value=12 Score=42.24 Aligned_cols=93 Identities=22% Similarity=0.281 Sum_probs=75.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019982 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQ----SQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (333)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq----~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (333)
.-+--+++.||.|..+||..|..-+...+.|. .++..||.++ +.|+.-+.++.+|.+-+..-..+++||.-.+-.
T Consensus 512 ~~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~-s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~ 590 (913)
T KOG0244|consen 512 GTLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKLKSLETQI-SLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHI 590 (913)
T ss_pred hhHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHH-HHHHHhhHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 44555777788888999998887666444443 3444555544 688888899999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccCC
Q 019982 115 LEVFRKTLVQSLKDDEDA 132 (333)
Q Consensus 115 LE~FKk~LmqSLqeD~~~ 132 (333)
+|.-|.+||+-..+|.+.
T Consensus 591 ~k~~kv~l~~~~~~d~ek 608 (913)
T KOG0244|consen 591 AKGQKVQLLRVMKEDAEK 608 (913)
T ss_pred HHHHHHHHHHHHhhhHHH
Confidence 999999999999998874
No 159
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=78.04 E-value=18 Score=32.03 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 49 EsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
--+...||..+......+...+..+..+..+|.
T Consensus 18 ~~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~ 50 (135)
T TIGR03495 18 SQRLRNARADLERANRVLKAQQAELASKANQLI 50 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 345566666666666666666666666666664
No 160
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=77.99 E-value=51 Score=31.50 Aligned_cols=82 Identities=15% Similarity=0.249 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH----HHHHh
Q 019982 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---------------DKLGQAQADKERLSKENEALTNT----VRKLQ 109 (333)
Q Consensus 49 EsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---------------~rL~~a~~e~~kL~kE~~sLa~T----vKKL~ 109 (333)
..++..+.++++..+..+..+++++..+...++ .+-..+.+....+..|.+.|.++ +.+|+
T Consensus 134 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 134 DAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAALD 213 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 335555555555555555566655555555554 11233333333333443344333 33444
Q ss_pred ----hhHHHHHHHHHHHHhhccccc
Q 019982 110 ----RDVSKLEVFRKTLVQSLKDDE 130 (333)
Q Consensus 110 ----RDvaKLE~FKk~LmqSLqeD~ 130 (333)
...+.|...+.......+.+.
T Consensus 214 ~~~~~~~~~l~~~~~~~~a~~~~~~ 238 (301)
T PF14362_consen 214 AQIAARKARLDEARQAKVAEFQAII 238 (301)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHhh
Confidence 455555555555555544443
No 161
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=77.93 E-value=57 Score=31.33 Aligned_cols=100 Identities=19% Similarity=0.301 Sum_probs=57.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 019982 27 FEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKD-----SRIAELQSQIESIYSSLS----DKLGQAQADKERLSKE 97 (333)
Q Consensus 27 yEQLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd-----~~i~~Lq~rv~~le~aL~----~rL~~a~~e~~kL~kE 97 (333)
.++|+-...-...++..++...+..+..|...+.... +.+...+.++..+...|. .+|....+...+|.+.
T Consensus 149 ~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~p~~~l~~~~~~Ld~l~~rL~~~~~~~l~~~~~~L~~l~~~ 228 (319)
T PF02601_consen 149 LQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRLPERKLEQQQQRLDELKQRLKQAIQQKLQRKRQRLQNLSNR 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566667777777888888888888888888887655 457777777777776665 3333333333333311
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019982 98 NEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (333)
Q Consensus 98 ~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 127 (333)
- ...+--.++++...++..|++.+.+.+.
T Consensus 229 l-~~~~~~~~l~~~~~~~~~l~~~~~~~l~ 257 (319)
T PF02601_consen 229 L-KRQSPQQKLNQQRQQLQRLQKRLQRKLS 257 (319)
T ss_pred h-hhhhhhhHHHHHHHHhhhhhHHHhhhhH
Confidence 1 1111223334444555566655555443
No 162
>PRK09039 hypothetical protein; Validated
Probab=77.83 E-value=22 Score=35.44 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=5.0
Q ss_pred HHHHHHHHHhhc
Q 019982 115 LEVFRKTLVQSL 126 (333)
Q Consensus 115 LE~FKk~LmqSL 126 (333)
++.+++.|-.-|
T Consensus 174 i~~L~~~L~~a~ 185 (343)
T PRK09039 174 IADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 163
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=77.68 E-value=18 Score=30.69 Aligned_cols=26 Identities=27% Similarity=0.426 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019982 85 GQAQADKERLSKENEALTNTVRKLQR 110 (333)
Q Consensus 85 ~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (333)
...++||+.|.-||+.|-..+.++..
T Consensus 32 ~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 32 QELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 37788888888888888777766654
No 164
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=77.64 E-value=20 Score=41.13 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=15.6
Q ss_pred HHHHHhhhhhcCCCChhHHHHHHHhhccc
Q 019982 303 EETLRKTDEVFGPENKDLYTIFEGLITRN 331 (333)
Q Consensus 303 EETL~KAeeIFG~~NkdLY~~FegLL~R~ 331 (333)
.|.|+...++.|.-+. .|.-|..+|+++
T Consensus 915 ~e~L~~l~~~l~~R~~-~~qk~r~~~~~~ 942 (1074)
T KOG0250|consen 915 DELLKALGEALESREQ-KYQKFRKLLTRR 942 (1074)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4455666666655443 466666665554
No 165
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=77.55 E-value=48 Score=37.63 Aligned_cols=43 Identities=30% Similarity=0.480 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----------HHHHHHHHHhhc
Q 019982 84 LGQAQADKERLSKENEALTNTVRKLQRDVSK-----------LEVFRKTLVQSL 126 (333)
Q Consensus 84 L~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK-----------LE~FKk~LmqSL 126 (333)
|..+.+.+.++.++|.+|..+|-++.|.... ||.||+.|...+
T Consensus 454 le~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~ 507 (980)
T KOG0980|consen 454 LESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLL 507 (980)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4455556667777777777777777665443 666666665443
No 166
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=77.41 E-value=20 Score=32.83 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Q 019982 94 LSKENEALTNTVRKLQRDVSKLEVF 118 (333)
Q Consensus 94 L~kE~~sLa~TvKKL~RDvaKLE~F 118 (333)
++.++......|..|.+.-..|+.+
T Consensus 161 ~~~~~k~~~~ei~~lk~~~~ql~~~ 185 (189)
T PF10211_consen 161 RQEEEKKHQEEIDFLKKQNQQLKAQ 185 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666655543
No 167
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=77.20 E-value=9.3 Score=34.31 Aligned_cols=68 Identities=21% Similarity=0.307 Sum_probs=31.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAE-LQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~-Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RD 111 (333)
.+..++-++|.+...++.+.......... +.+....++.++ ....+|..+..+|.+.|..+++.|++.
T Consensus 122 ~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei----~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 122 SLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEI----EKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555565555555554433222221 112222222222 244444445666666677777776654
No 168
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.04 E-value=18 Score=41.51 Aligned_cols=79 Identities=18% Similarity=0.268 Sum_probs=48.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019982 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (333)
Q Consensus 44 RVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk 120 (333)
-.+.|++|++.|+.++..=......+++.+.....-+. ..+.....++.+...|+....-.+|||..+|.|++.=++
T Consensus 844 ~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~ 923 (1174)
T KOG0933|consen 844 QISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKA 923 (1174)
T ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHH
Confidence 34444555555555444333333333333333333222 445555677788889999999999999999999987665
Q ss_pred HH
Q 019982 121 TL 122 (333)
Q Consensus 121 ~L 122 (333)
..
T Consensus 924 ~~ 925 (1174)
T KOG0933|consen 924 NA 925 (1174)
T ss_pred HH
Confidence 54
No 169
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=77.03 E-value=24 Score=41.31 Aligned_cols=80 Identities=21% Similarity=0.363 Sum_probs=57.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----
Q 019982 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS----- 113 (333)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva----- 113 (333)
+.+-.+|..+|.|+.+|+-++.+-+ ++.-+++...|+...+ ...-+.+.+..+...+.+.|+++.+.|.
T Consensus 1011 ~~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~----~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~k 1084 (1294)
T KOG0962|consen 1011 RNLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEERE----KLSSEKNLLLGEMKQYESQIKKLKQELREKDFK 1084 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHH----HhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 5666777777777777777777655 6666666666666555 5666777777788888888888888887
Q ss_pred -HHHHHHHHHHh
Q 019982 114 -KLEVFRKTLVQ 124 (333)
Q Consensus 114 -KLE~FKk~Lmq 124 (333)
+.+.|++++++
T Consensus 1085 d~~~nyr~~~ie 1096 (1294)
T KOG0962|consen 1085 DAEKNYRKALIE 1096 (1294)
T ss_pred cHHHHHHHHHHH
Confidence 46666666654
No 170
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=76.83 E-value=42 Score=33.04 Aligned_cols=63 Identities=16% Similarity=0.325 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019982 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (333)
Q Consensus 50 sE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (333)
.|....+.+|..+..++..+++.+...|..+. .|+..+.++...|..|+..|..+|..+.--|
T Consensus 193 ~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV 258 (269)
T PF05278_consen 193 EEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKV 258 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444454444 4444555555555555555555555555333
No 171
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=76.78 E-value=53 Score=32.36 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=21.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
..-+..++.|+..|.+.-.+....+.+|+.....++.++.
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~ 81 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELE 81 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666555555555666655555555554
No 172
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=76.55 E-value=97 Score=32.80 Aligned_cols=33 Identities=9% Similarity=0.381 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHHhhccccHHHHHHhhhhhc
Q 019982 281 SYEQFAIFLANVKELNAHKQTKEETLRKTDEVF 313 (333)
Q Consensus 281 SYEQFsaFLANIKELNAhkQTREETL~KAeeIF 313 (333)
=|+.|..|....-++-.+..+-.....+|-.=+
T Consensus 378 Lydkl~~f~~~~~klG~~L~~a~~~y~~A~~~L 410 (475)
T PRK10361 378 LYDKMRLFVDDMSAIGQSLDKAQDNYRQAMKKL 410 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777777777777666555555555554333
No 173
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=76.44 E-value=43 Score=35.32 Aligned_cols=46 Identities=30% Similarity=0.476 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhh---------HHHHHHHHHHHHhhcc
Q 019982 82 DKLGQAQADKERLSKENEALTNTV--------RKLQRD---------VSKLEVFRKTLVQSLK 127 (333)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~Tv--------KKL~RD---------vaKLE~FKk~LmqSLq 127 (333)
.++....+-.++|..+-.+|++.+ ...|+. =.+|+.|++.|-+.-.
T Consensus 99 ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~ 161 (475)
T PRK10361 99 DKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFG 161 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 555556666677777777777643 111221 1357888888765443
No 174
>PRK02119 hypothetical protein; Provisional
Probab=76.40 E-value=17 Score=28.84 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019982 100 ALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (333)
Q Consensus 100 sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (333)
.|..+|-+.++++++|+.==+.|.+.|.+-
T Consensus 27 ~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 27 ELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666666666666556666666553
No 175
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=76.36 E-value=18 Score=36.71 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=13.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 019982 44 RVSDLESEHSALRSQLAEKDSRIAEL 69 (333)
Q Consensus 44 RVs~LEsE~~~LR~~laEKd~~i~~L 69 (333)
.+..|+.++..|+.++++....+.++
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~ 262 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGL 262 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555555555555555555555544
No 176
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=76.11 E-value=27 Score=36.54 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=28.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
..-.-.|++|...+++++++|+.++.+||+...+|-..+.
T Consensus 33 ~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 33 SAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334457777788888888888888888877776655544
No 177
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=76.03 E-value=0.85 Score=48.88 Aligned_cols=32 Identities=22% Similarity=0.479 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le 77 (333)
+.||.+||.++.+.|.||.| +.+|+.||..|+
T Consensus 307 a~r~~klE~~ve~YKkKLed----~~~lk~qvk~Le 338 (713)
T PF05622_consen 307 ADRADKLENEVEKYKKKLED----LEDLKRQVKELE 338 (713)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 56788888888888877765 444444444333
No 178
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=75.96 E-value=38 Score=31.38 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=34.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
.-+.-.+.+...|++.||.+|-.....+.+++.++-..|..|.
T Consensus 57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~ 99 (194)
T PF15619_consen 57 AELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELL 99 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567778888999999888888888888888888888776
No 179
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=75.78 E-value=40 Score=33.67 Aligned_cols=90 Identities=24% Similarity=0.367 Sum_probs=48.0
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 019982 26 PFEQLDVARKITSIAISTRVSDL---ESEHSALRSQLAE-KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKE---- 97 (333)
Q Consensus 26 PyEQLdvArkIts~A~atRVs~L---EsE~~~LR~~laE-Kd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE---- 97 (333)
|..|=+|+.|=.-.=++--+.+| |.||..||.||+- +++-|+|==-| .|++|. |+.|..|..+|..-
T Consensus 62 PLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHR---VEAQLA--LKEARkEIkQLkQvieTm 136 (305)
T PF15290_consen 62 PLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHR---VEAQLA--LKEARKEIKQLKQVIETM 136 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 56788888776554444333333 4555555555552 22233222222 234443 66777777777653
Q ss_pred HHHHHHHHHHHhh-------hHHHHHHHHH
Q 019982 98 NEALTNTVRKLQR-------DVSKLEVFRK 120 (333)
Q Consensus 98 ~~sLa~TvKKL~R-------DvaKLE~FKk 120 (333)
|++|+..=|.+++ .--|||+|=.
T Consensus 137 rssL~ekDkGiQKYFvDINiQN~KLEsLLq 166 (305)
T PF15290_consen 137 RSSLAEKDKGIQKYFVDINIQNKKLESLLQ 166 (305)
T ss_pred HhhhchhhhhHHHHHhhhhhhHhHHHHHHH
Confidence 4555555443333 4467998755
No 180
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=75.73 E-value=38 Score=31.83 Aligned_cols=86 Identities=20% Similarity=0.262 Sum_probs=59.7
Q ss_pred hcCCCChh-hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 019982 20 QVLPSDPF-EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLS--- 95 (333)
Q Consensus 20 aVLPsDPy-EQLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~--- 95 (333)
+-+|..+- .|..+.+.-+.++=+.+... ..++.++.+|-+.|+++.+++..||.. -+++...+++.+.+.
T Consensus 44 ~~~~~~~~~~~~e~~k~~~~i~da~~dq~-----~~~q~e~~~~lk~~a~~~E~lk~lE~~-kae~k~~~e~re~~l~~~ 117 (192)
T COG3334 44 AELAEKKAAAQSEIEKFCANIADAAADQL-----YALQKELLEKLKDLAEVNERLKALEKK-KAELKDLEEEREGILRSK 117 (192)
T ss_pred hhcccccchhhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45555554 88888888887777766655 777888888888888888888888875 566667777776666
Q ss_pred -HHHHHHHHHHHHHhhh
Q 019982 96 -KENEALTNTVRKLQRD 111 (333)
Q Consensus 96 -kE~~sLa~TvKKL~RD 111 (333)
.|.+-|+.+++++-=|
T Consensus 118 qae~~klv~iY~~Mkp~ 134 (192)
T COG3334 118 QAEDGKLVKIYSKMKPD 134 (192)
T ss_pred HhhhhHHHHHHHcCChh
Confidence 3333355555555443
No 181
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=75.69 E-value=63 Score=29.35 Aligned_cols=78 Identities=19% Similarity=0.343 Sum_probs=58.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRI-----AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i-----~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
+...|-+||......|.+|+|=.+.. .++++=|+.+.. +|-+|....++-.+|.+.||.|-..+++|..=|.|-
T Consensus 46 ~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~-lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierA 124 (159)
T PF05384_consen 46 VIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHE-LQVRLAMLREREKQLRERRDELERRLRNLEETIERA 124 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999998655543 344444444432 335666888888999999999999999999999887
Q ss_pred HHHH
Q 019982 116 EVFR 119 (333)
Q Consensus 116 E~FK 119 (333)
|.+=
T Consensus 125 E~l~ 128 (159)
T PF05384_consen 125 ENLV 128 (159)
T ss_pred HHHH
Confidence 7653
No 182
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=75.64 E-value=10 Score=29.15 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=26.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 44 RVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
||..||.++++|-..+.-=...+.+|.+.++.++...+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888887777766666666677777666665543
No 183
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=75.62 E-value=61 Score=32.32 Aligned_cols=76 Identities=18% Similarity=0.270 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 019982 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--------------DKLG----QAQADKERLSKENEALTNTVRKL 108 (333)
Q Consensus 47 ~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~--------------~rL~----~a~~e~~kL~kE~~sLa~TvKKL 108 (333)
.|-+.+++++..|.+-.+.|.+|+.+|..|..++. ..+. ...+-..+|++=.+.|+..-.+|
T Consensus 71 ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l 150 (301)
T PF06120_consen 71 QLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERL 150 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777887777777888777777776662 1121 11222334444444577777777
Q ss_pred hhhHHHHHHHHHHH
Q 019982 109 QRDVSKLEVFRKTL 122 (333)
Q Consensus 109 ~RDvaKLE~FKk~L 122 (333)
++.+.|+..--++|
T Consensus 151 ~q~~~k~~~~q~~l 164 (301)
T PF06120_consen 151 EQMQSKASETQATL 164 (301)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776655554
No 184
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=75.43 E-value=33 Score=36.62 Aligned_cols=60 Identities=23% Similarity=0.422 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019982 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (333)
Q Consensus 52 ~~~LR~~laEKd~~i~~Lq~rv~~le~aL~------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RD 111 (333)
+.+|...+.+|+..|..||++...|-.++. .-...-.+|.++|.+|-+-.--..-+|...
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~ 397 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKS 397 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 556677777888888888888888887776 333344445555555554444444444433
No 185
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=75.37 E-value=63 Score=29.22 Aligned_cols=70 Identities=19% Similarity=0.272 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 47 ~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
.|..+..+|..+...+...-...+.++..+|..+...-+........|..||..|...+|.+.-.+.+|+
T Consensus 54 ~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rle 123 (158)
T PF09744_consen 54 LLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLE 123 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc
Confidence 3333344444333333333333444455555544433334444445555555555555555544444444
No 186
>PRK04863 mukB cell division protein MukB; Provisional
Probab=75.33 E-value=66 Score=38.37 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=13.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHH
Q 019982 39 IAISTRVSDLESEHSALRSQLAE 61 (333)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~laE 61 (333)
.-|..++..||.++...+..+..
T Consensus 317 ~ELe~rL~kLEkQaEkA~kyleL 339 (1486)
T PRK04863 317 AELNEAESDLEQDYQAASDHLNL 339 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666555443
No 187
>PRK12704 phosphodiesterase; Provisional
Probab=75.18 E-value=80 Score=33.40 Aligned_cols=16 Identities=13% Similarity=0.385 Sum_probs=10.0
Q ss_pred HHHHHHHHhhcccccC
Q 019982 116 EVFRKTLVQSLKDDED 131 (333)
Q Consensus 116 E~FKk~LmqSLqeD~~ 131 (333)
|..|+.||..+.++-.
T Consensus 153 ~ea~~~l~~~~~~~~~ 168 (520)
T PRK12704 153 EEAKEILLEKVEEEAR 168 (520)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3457777777766543
No 188
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=75.17 E-value=25 Score=39.09 Aligned_cols=38 Identities=32% Similarity=0.404 Sum_probs=29.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 44 RVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
.|+.|++|..+|++-|+.|.+....+++-|..+.+.+-
T Consensus 496 ~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~ 533 (961)
T KOG4673|consen 496 LITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELT 533 (961)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999998877777766665555443
No 189
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=75.14 E-value=22 Score=34.92 Aligned_cols=85 Identities=22% Similarity=0.379 Sum_probs=63.8
Q ss_pred hcCCCChhhhHHHHHHHHHH---H------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 20 QVLPSDPFEQLDVARKITSI---A------ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQAD 90 (333)
Q Consensus 20 aVLPsDPyEQLdvArkIts~---A------~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e 90 (333)
.||=+ ..+.+--|+++-.. + .-.+|...+.|...+...|.++...+.++++|+.. +.+||..+..+
T Consensus 169 ~WLR~-~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e----~~~rl~~l~~~ 243 (269)
T PF05278_consen 169 DWLRS-KLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITE----MKGRLGELEME 243 (269)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 45543 45555566555332 2 23456666788888888899999999999999863 34888899999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 019982 91 KERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 91 ~~kL~kE~~sLa~TvKKL~ 109 (333)
-.+|.+.-..+...|+|..
T Consensus 244 ~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 244 STRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999974
No 190
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=74.85 E-value=21 Score=40.92 Aligned_cols=59 Identities=20% Similarity=0.400 Sum_probs=39.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEA 100 (333)
Q Consensus 38 s~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~s 100 (333)
+.+++.-+.-||+-+.+||++|.||-...-+|+.-+..++..+. ...+|++.+..|..+
T Consensus 172 ~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~----klrqe~~e~l~ea~r 230 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEIS----KLRQEIEEFLDEAHR 230 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 34566666777888888888888888777777777777776664 344444444444433
No 191
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=74.74 E-value=21 Score=27.64 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhccccc
Q 019982 100 ALTNTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (333)
Q Consensus 100 sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~ 130 (333)
.|..+|-+.++++++|+.=-+.|..-|.+-.
T Consensus 22 ~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 22 ELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666666666666666666666666644
No 192
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=74.73 E-value=83 Score=33.22 Aligned_cols=16 Identities=13% Similarity=0.387 Sum_probs=10.1
Q ss_pred HHHHHHHHhhcccccC
Q 019982 116 EVFRKTLVQSLKDDED 131 (333)
Q Consensus 116 E~FKk~LmqSLqeD~~ 131 (333)
|-.|..||..+.++-.
T Consensus 147 ~eak~~l~~~~~~~~~ 162 (514)
T TIGR03319 147 EEAKEILLEEVEEEAR 162 (514)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3457777777766643
No 193
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=74.63 E-value=21 Score=34.86 Aligned_cols=84 Identities=23% Similarity=0.279 Sum_probs=50.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEK-------DSRIAELQSQIESIYSSLSDKLGQAQADKERLSK----ENEALTNTVRKL 108 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEK-------d~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~k----E~~sLa~TvKKL 108 (333)
+...-++.|+.+...++.+|++- .-.+..|+.++..|+.++. ++..++.. ..+.+......|
T Consensus 211 ~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~-------~e~~~i~~~~~~~l~~~~~~~~~L 283 (362)
T TIGR01010 211 AQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQID-------EQRNQLSGGLGDSLNEQTADYQRL 283 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHH-------HHHHHhhcCCCccHHHHHHHHHHH
Confidence 34444566666666666665543 3456677888888887776 12222211 234445567788
Q ss_pred hhhHHHHHHHHHHHHhhccccc
Q 019982 109 QRDVSKLEVFRKTLVQSLKDDE 130 (333)
Q Consensus 109 ~RDvaKLE~FKk~LmqSLqeD~ 130 (333)
.||+.=-+..=..+++.+++-.
T Consensus 284 ~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 284 VLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888876666666666666544
No 194
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=74.60 E-value=38 Score=35.68 Aligned_cols=70 Identities=23% Similarity=0.439 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhhHHH
Q 019982 62 KDSRIAELQSQIESIYSSLS-----------------DKLGQAQADKERLSKENEALTNT----------VRKLQRDVSK 114 (333)
Q Consensus 62 Kd~~i~~Lq~rv~~le~aL~-----------------~rL~~a~~e~~kL~kE~~sLa~T----------vKKL~RDvaK 114 (333)
-...+.++++++..|...|. ..|.++.+.+..|..|-+.|... ++++..++.+
T Consensus 280 ~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~ 359 (569)
T PRK04778 280 AEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLES 359 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHH
Confidence 44455556666655554443 56788899999999999999988 9999999999
Q ss_pred HHHHHHHHHhhcccccC
Q 019982 115 LEVFRKTLVQSLKDDED 131 (333)
Q Consensus 115 LE~FKk~LmqSLqeD~~ 131 (333)
|+.=-+.+...+.+...
T Consensus 360 Le~~~~~~~~~i~~~~~ 376 (569)
T PRK04778 360 LEKQYDEITERIAEQEI 376 (569)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 88777777766655544
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=74.02 E-value=25 Score=33.62 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 49 EsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
|..+.+|=+.+.-+...+.+|+.++..|..++. ......+.+..|-+.|..--|.|..||+++
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~----~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDID----SLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555566677777776666664 444455556666666666677777777764
No 196
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=73.95 E-value=54 Score=31.23 Aligned_cols=38 Identities=24% Similarity=0.167 Sum_probs=25.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL 80 (333)
..|..||.|+..|+.....+...+..|+.....+-..+
T Consensus 68 ~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~ 105 (256)
T PF14932_consen 68 EDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQEL 105 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888887777777777777765444444333
No 197
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=73.76 E-value=22 Score=27.60 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
...+-.+.|.+.--.....+.+|.|.|..|
T Consensus 15 ~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L 44 (69)
T PF04102_consen 15 FQEDTIEELNDVVTEQQRQIDRLQRQLRLL 44 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444
No 198
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=73.76 E-value=50 Score=36.83 Aligned_cols=66 Identities=32% Similarity=0.386 Sum_probs=34.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVR 106 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~----------~rL~~a~~e~~kL~kE~~sLa~TvK 106 (333)
.-.+-..|-+|+.+||.+|-+|...+...+..+..++..+. +.+.....+...|++..++|-.+++
T Consensus 334 ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ 409 (775)
T PF10174_consen 334 KEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLR 409 (775)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666666666555555555555443 3333333344444444444444443
No 199
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=73.62 E-value=14 Score=38.90 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019982 59 LAEKDSRIAELQSQIESI 76 (333)
Q Consensus 59 laEKd~~i~~Lq~rv~~l 76 (333)
|+|-.....+|+++++.|
T Consensus 71 LteqQ~kasELEKqLaaL 88 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEI 88 (475)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 200
>PRK02793 phi X174 lysis protein; Provisional
Probab=73.36 E-value=22 Score=28.04 Aligned_cols=29 Identities=28% Similarity=0.324 Sum_probs=13.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019982 101 LTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (333)
Q Consensus 101 La~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (333)
|..+|-+.++++++|+.==+.|.+.|.+-
T Consensus 27 Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 27 LNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444445555544444444545443
No 201
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=72.79 E-value=6.6 Score=30.38 Aligned_cols=27 Identities=30% Similarity=0.430 Sum_probs=21.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIA 67 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~ 67 (333)
+..|+.-||+||.|+++.++.|..+-.
T Consensus 26 L~~RIa~L~aEI~R~~~~~~~K~a~r~ 52 (59)
T PF06698_consen 26 LEERIALLEAEIARLEAAIAKKSASRA 52 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999998876543
No 202
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=72.76 E-value=78 Score=29.05 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 019982 86 QAQADKERLSKENE 99 (333)
Q Consensus 86 ~a~~e~~kL~kE~~ 99 (333)
......+.+.+..+
T Consensus 145 ~l~~~~e~~ek~~~ 158 (189)
T PF10211_consen 145 ELKNKCEQLEKREE 158 (189)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 203
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=72.76 E-value=75 Score=30.53 Aligned_cols=60 Identities=30% Similarity=0.353 Sum_probs=33.8
Q ss_pred CChHHHHhcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 13 DLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSAL--RSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 13 ~Lp~eilaVLPsDPyEQLdvArkIts~A~atRVs~LEsE~~~L--R~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
.|-+||-.||=.+|.+=.| ++..|-.-|+.-..+| ++++++| +.+.+|..++++.+..|.
T Consensus 2 sL~Eeikrvl~enpeilvd--------vL~~Rpeilye~l~kL~pwq~latk-~dve~l~~e~E~~~k~l~ 63 (231)
T COG5493 2 SLAEEIKRVLLENPEILVD--------VLTQRPEILYEVLAKLTPWQQLATK-QDVEELRKETEQRQKELA 63 (231)
T ss_pred CHHHHHHHHHHhCcHHHHH--------HHHhChHHHHHHHHhhchHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4667777888777744444 3445555555555554 4556655 445555555555544443
No 204
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=72.69 E-value=18 Score=27.23 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk 120 (333)
....+.++|.+|++.|...+++|..|-+-+|.+=|
T Consensus 28 ~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 28 ELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33344456666666777777777667777766655
No 205
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=72.64 E-value=38 Score=31.11 Aligned_cols=40 Identities=30% Similarity=0.390 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhHHHHH
Q 019982 76 IYSSLSDKLGQAQADKERLSKENEAL-------TNTVRKLQRDVSKLE 116 (333)
Q Consensus 76 le~aL~~rL~~a~~e~~kL~kE~~sL-------a~TvKKL~RDvaKLE 116 (333)
||.+| .||..-.+.++.|..-|+-| -.+-..|..|+.||-
T Consensus 62 Le~~l-~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt 108 (182)
T PF15035_consen 62 LEEAL-IRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLT 108 (182)
T ss_pred HHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34434 35666666666666666666 455566677777753
No 206
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=72.61 E-value=17 Score=27.39 Aligned_cols=29 Identities=28% Similarity=0.404 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 46 SDLESEHSALRSQLAEKDSRIAELQSQIE 74 (333)
Q Consensus 46 s~LEsE~~~LR~~laEKd~~i~~Lq~rv~ 74 (333)
..+..|+..|..++++-...+.+|++++.
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333333333333333
No 207
>PRK04863 mukB cell division protein MukB; Provisional
Probab=72.55 E-value=49 Score=39.40 Aligned_cols=50 Identities=22% Similarity=0.342 Sum_probs=25.2
Q ss_pred CC-CccchHHHHHHHHhccCHHHHHHHHHHH-------HHHhh---ccccHHHHHHhhhhhcC
Q 019982 263 GK-TRVDGKEFFRQVRNRLSYEQFAIFLANV-------KELNA---HKQTKEETLRKTDEVFG 314 (333)
Q Consensus 263 gr-~rVDGKEFFRQARsRLSYEQFsaFLANI-------KELNA---hkQTREETL~KAeeIFG 314 (333)
|+ +|.+-.+-||.+.-++ ++.....++. ++|-- +.|.-+..|+.+..-+|
T Consensus 487 Gkv~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~ 547 (1486)
T PRK04863 487 GEVSRSEAWDVARELLRRL--REQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLG 547 (1486)
T ss_pred CCcCHHHHHHHHHHHHHHh--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44 5556666666665443 3333333333 33333 44555666666665444
No 208
>PRK12705 hypothetical protein; Provisional
Probab=72.33 E-value=51 Score=34.98 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHH--------HHHHHHHhhcc
Q 019982 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR----DVSKLE--------VFRKTLVQSLK 127 (333)
Q Consensus 60 aEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~R----DvaKLE--------~FKk~LmqSLq 127 (333)
.++...+...+.|+.+.|..|..|.........+|.+....|...-++|.. ...+|| ..|+.||..+.
T Consensus 73 ~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~ia~lt~~eak~~l~~~~~ 152 (508)
T PRK12705 73 RREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLD 152 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344444444455555555555434434444444444444444333333222 223343 35888988888
Q ss_pred cccC
Q 019982 128 DDED 131 (333)
Q Consensus 128 eD~~ 131 (333)
++-.
T Consensus 153 ~~~~ 156 (508)
T PRK12705 153 AELE 156 (508)
T ss_pred HHHH
Confidence 7654
No 209
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=72.32 E-value=43 Score=27.45 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 82 DKLGQAQADKERLSKENEALTNTVR 106 (333)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvK 106 (333)
.+|-.++.+.++|..-+..++.-++
T Consensus 53 ~eLD~~~ar~~~Le~~~~Evs~rL~ 77 (89)
T PF13747_consen 53 QELDQAEARANRLEEANREVSRRLD 77 (89)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544444333
No 210
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=72.31 E-value=18 Score=30.36 Aligned_cols=38 Identities=16% Similarity=0.234 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lm 123 (333)
...+++.+|..+|+.|...|+.|+.|-+=+|.-=|.=+
T Consensus 38 ~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~L 75 (105)
T PRK00888 38 AQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNEL 75 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHc
Confidence 56667777888888888888888776555555544433
No 211
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=72.28 E-value=93 Score=29.73 Aligned_cols=64 Identities=22% Similarity=0.323 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 53 SALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 53 ~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
+.||.++.+=..+..+|...++.+|..= ..|.....|.+.|..|+.+++.-++-.+-|+..||+
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~ 67 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQERMAHVEELRQINQDINTLEN 67 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333 244455555555555555555555555555555544
No 212
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=72.16 E-value=14 Score=32.50 Aligned_cols=63 Identities=27% Similarity=0.423 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019982 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (333)
Q Consensus 46 s~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (333)
..|..|+..|+.++.+-...+..|+..+..|...+- .....+...+|.+|+..|..-+..|..
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t--~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPT--NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666666666666666666655553 123334444555555555555555443
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=72.09 E-value=18 Score=34.62 Aligned_cols=61 Identities=20% Similarity=0.322 Sum_probs=25.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEA 100 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~s 100 (333)
++-.||.+||.-+..-.+.+.|-...|.+||..|..|-..+. -.|.+..+++..|-.+-|.
T Consensus 37 ~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 37 SVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555443333333333333333333333333332 2222444444444444444
No 214
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=72.03 E-value=54 Score=26.90 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (333)
Q Consensus 47 ~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL 80 (333)
.||..+.+|-...+.-|..+.++......++..+
T Consensus 28 ~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~ 61 (96)
T PF08647_consen 28 ILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEM 61 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444444444444445555555555555555544
No 215
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=72.01 E-value=51 Score=36.49 Aligned_cols=80 Identities=21% Similarity=0.289 Sum_probs=48.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAE-------LQSQIESIYSSLS----------DKLGQAQADKERLSKENEALT 102 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~-------Lq~rv~~le~aL~----------~rL~~a~~e~~kL~kE~~sLa 102 (333)
.|..||-.||.|+..+|+.+.--...+.. |.+-.+.+|.+.. -|=.+.++|...|-+||=+|.
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQ 110 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQ 110 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 36788899999999999888644333333 3333344443332 222334566677777777777
Q ss_pred HHHHHHhhhHHHHHHHH
Q 019982 103 NTVRKLQRDVSKLEVFR 119 (333)
Q Consensus 103 ~TvKKL~RDvaKLE~FK 119 (333)
.+|--|..-=--.|.+|
T Consensus 111 Kqvs~Lk~sQvefE~~K 127 (717)
T PF09730_consen 111 KQVSVLKQSQVEFEGLK 127 (717)
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 77766655555555554
No 216
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=71.95 E-value=13 Score=28.46 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
++++.....-++-..+...|...+.+|+-+++|||.
T Consensus 17 a~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~ 52 (53)
T PF08898_consen 17 AQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKLEA 52 (53)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhc
Confidence 677777777788888999999999999999999984
No 217
>PRK01156 chromosome segregation protein; Provisional
Probab=71.94 E-value=49 Score=36.24 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhH
Q 019982 91 KERLSKENEALTNTVRKLQRDV 112 (333)
Q Consensus 91 ~~kL~kE~~sLa~TvKKL~RDv 112 (333)
.+.|..+...|..+|.+|...+
T Consensus 697 ~~~l~~~i~~l~~~~~~l~eel 718 (895)
T PRK01156 697 RARLESTIEILRTRINELSDRI 718 (895)
T ss_pred HHHHHHHHHHHHhhHHHHHHHH
Confidence 3334444444444444444433
No 218
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=71.93 E-value=61 Score=27.50 Aligned_cols=40 Identities=25% Similarity=0.309 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqS 125 (333)
....++++|..++..|...|++|+-+.+.+|..-|.-...
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~~l~~ 100 (117)
T COG2919 61 AQQAELEKLSARNTALEAEIKDLKDGRDYIEERARSELGM 100 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhCC
Confidence 6677888899999999999999998877887777766653
No 219
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=71.80 E-value=17 Score=36.39 Aligned_cols=80 Identities=19% Similarity=0.191 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019982 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----DKLGQAQ--ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (333)
Q Consensus 50 sE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~-----~rL~~a~--~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L 122 (333)
.-+..|+|.|..=...-..|..+++.||..|. .-|..+- +-+.+---||..|+.-+-+-.+.--||-+=+..|
T Consensus 30 dairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdLaa~i~etkeeNlkLrTd~eaL 109 (389)
T KOG4687|consen 30 DAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDLAADIEETKEENLKLRTDREAL 109 (389)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHHHHHHHHHHHHhHhhhHHHHHH
Confidence 34566666666555555566666666666654 0111111 1112233467777777777777777777777777
Q ss_pred Hhhcccc
Q 019982 123 VQSLKDD 129 (333)
Q Consensus 123 mqSLqeD 129 (333)
.+.+.|=
T Consensus 110 ~dq~adL 116 (389)
T KOG4687|consen 110 LDQKADL 116 (389)
T ss_pred HHHHHHH
Confidence 7766543
No 220
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=71.66 E-value=33 Score=33.52 Aligned_cols=75 Identities=19% Similarity=0.225 Sum_probs=44.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FK 119 (333)
+..+...+-.|-..|+..|.|++....++|+|+..|+..+. +..++-.+|-.|-.-|-.-...|--.|.-+|.|.
T Consensus 140 ~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s----~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~ 214 (290)
T COG4026 140 LKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS----RLEEMLKKLPGEVYDLKKRWDELEPGVELPEEEL 214 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhchhHHHHHHHHHHHhcccccchHHHH
Confidence 34455566666677777777777777777777777777765 4444444444454444444444554444444443
No 221
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=71.65 E-value=24 Score=38.10 Aligned_cols=58 Identities=24% Similarity=0.365 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 54 ALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 54 ~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
.|++.-+|||.....|+.-...+. .|+....++...|.+|++....-|..|.|.|++|
T Consensus 5 ~l~qlq~Erd~ya~~lk~e~a~~q----qr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eL 62 (617)
T PF15070_consen 5 SLKQLQAERDQYAQQLKEESAQWQ----QRMQQMSEEVRTLKEEKEHDISRVQELERSLSEL 62 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666665544333 4555667777777777777777777777777775
No 222
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=71.30 E-value=96 Score=29.50 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHhhc
Q 019982 92 ERLSKENEALTNTVRKLQRDVSK-------LEVFRKTLVQSL 126 (333)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~RDvaK-------LE~FKk~LmqSL 126 (333)
.-+..+...+..+|.+|.+.|.+ |++-|..|+.-.
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~ 143 (225)
T COG1842 102 KALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARK 143 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555544 445555555443
No 223
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=71.27 E-value=46 Score=25.75 Aligned_cols=51 Identities=20% Similarity=0.332 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 61 EKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
+++..-.+||.-|-.=-..|. .|-++..+|..+-..|.+.+..|+..+.+|
T Consensus 34 ~i~~~~~eLr~~V~~nY~~fI----~as~~I~~m~~~~~~l~~~l~~l~~~~~~l 84 (87)
T PF08700_consen 34 EIEEKDEELRKLVYENYRDFI----EASDEISSMENDLSELRNLLSELQQSIQSL 84 (87)
T ss_pred HHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444556655555554444 888999999999999999999998888776
No 224
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=71.17 E-value=46 Score=40.41 Aligned_cols=42 Identities=26% Similarity=0.398 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019982 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (333)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lm 123 (333)
.++..+.-+..+|.+|+..|..|-++|..|+.+|..-+.-|+
T Consensus 738 ~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~ 779 (1822)
T KOG4674|consen 738 EKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQ 779 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888889999999999999999999999999998888775
No 225
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=70.89 E-value=53 Score=33.41 Aligned_cols=88 Identities=33% Similarity=0.439 Sum_probs=60.4
Q ss_pred ChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH---H---------HHH
Q 019982 25 DPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDS-------RIAELQSQIESIYSSLS---D---------KLG 85 (333)
Q Consensus 25 DPyEQLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~-------~i~~Lq~rv~~le~aL~---~---------rL~ 85 (333)
||-+|-+|+ .+=|++||.|...+-.+|+-=.. .|-.|..|+++|+.+|. . .|.
T Consensus 213 dp~~qaevq--------~~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q~isag~~~~sl~ 284 (372)
T COG3524 213 DPKAQAEVQ--------MSLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQAISAGGSSQSLS 284 (372)
T ss_pred ChhhhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCccchh
Confidence 788888887 45688999999999998885443 35789999999998887 1 333
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHH
Q 019982 86 QAQADKERLSKEN----EALTNTVRKLQRDVSKLEVFRKTL 122 (333)
Q Consensus 86 ~a~~e~~kL~kE~----~sLa~TvKKL~RDvaKLE~FKk~L 122 (333)
.-..|-+.|.-|| ..+++.++-|. -||.|+-++++
T Consensus 285 ~qaAefq~l~lE~~fAekay~AAl~SlE--sArieAdrqq~ 323 (372)
T COG3524 285 NQAAEFQRLYLENTFAEKAYAAALTSLE--SARIEADRQQL 323 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhhh
Confidence 3334444555454 24555556553 36777777765
No 226
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=70.83 E-value=67 Score=32.74 Aligned_cols=86 Identities=16% Similarity=0.295 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH---H---
Q 019982 31 DVARKITSIAISTRVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS--DKLGQAQADKERLSK---E--- 97 (333)
Q Consensus 31 dvArkIts~A~atRVs~LEsE~~~LR~~laEK-----d~~i~~Lq~rv~~le~aL~--~rL~~a~~e~~kL~k---E--- 97 (333)
+++.+|-.++-...+..++.+...|.+.+.+- ...+..+-.+++.|...+. .++....++...|.+ +
T Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~l~el~~~e~D 90 (364)
T TIGR00020 11 DLTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSELLELAVEEDD 90 (364)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 46777777776667777777777777777542 2334444445555554444 444444444433322 1
Q ss_pred ---HHHHHHHHHHHhhhHHHHH
Q 019982 98 ---NEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 98 ---~~sLa~TvKKL~RDvaKLE 116 (333)
+.-+...++.|.+++.+||
T Consensus 91 ~e~~~~a~~e~~~l~~~l~~le 112 (364)
T TIGR00020 91 EETFNELDAELKALEKKLAELE 112 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345577889999999999
No 227
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=70.82 E-value=39 Score=28.43 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=28.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~a 79 (333)
.|..+|..|+..-..|.+.+.++...+...-+....++..
T Consensus 76 ~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~ 115 (213)
T cd00176 76 EIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDA 115 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888888888888888887777765555555443
No 228
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=70.74 E-value=18 Score=34.72 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=34.7
Q ss_pred HhcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 019982 19 LQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQL---AEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 19 laVLPsDPyEQLdvArkIts~A~atRVs~LEsE~~~LR~~l---aEKd~~i~~Lq~rv~~le~aL~ 81 (333)
-..||+|||+.- -.-=++.+|...-..+...--.+ .+++..+.++.+.+.-||.+|.
T Consensus 87 ~~iLP~DPy~Ra------~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~ 146 (231)
T KOG0406|consen 87 PPILPSDPYERA------QARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELG 146 (231)
T ss_pred CCCCCCCHHHHH------HHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHh
Confidence 357999999852 22224444444434444333332 4667777788888888887776
No 229
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=70.58 E-value=68 Score=27.50 Aligned_cols=44 Identities=27% Similarity=0.286 Sum_probs=33.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 38 s~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
...+|.+.-.+|.++..+|.++.++-..+..|+.++..++..+.
T Consensus 43 n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~ 86 (150)
T PF07200_consen 43 NEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQD 86 (150)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788899999999999999999999999888887666
No 230
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=70.36 E-value=21 Score=30.79 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019982 82 DKLGQAQADKERLSKENEALTNTVRKLQR 110 (333)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (333)
.|.-...+||-||..||..|-+-+..|+-
T Consensus 77 qRVdsVKEEnLKLrSENQVLGQYIeNLMS 105 (120)
T KOG3650|consen 77 QRVDSVKEENLKLRSENQVLGQYIENLMS 105 (120)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Confidence 44557889999999999999998887764
No 231
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.11 E-value=37 Score=33.29 Aligned_cols=57 Identities=25% Similarity=0.514 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 59 LAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 59 laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
+..+|..|.++++.+..++..|. ..+.........+.+|++.+-.-+|+|+.+++.|
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444 3333444444455555555555555555555554
No 232
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=70.07 E-value=26 Score=34.81 Aligned_cols=71 Identities=27% Similarity=0.371 Sum_probs=54.2
Q ss_pred HHHHHHHHhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 36 ITSIAISTRVSDLESEHS-------ALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTV 105 (333)
Q Consensus 36 Its~A~atRVs~LEsE~~-------~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~Tv 105 (333)
|--+|--.|+..||.|.+ .||..-.|=+.++.+|-+-|+-....+. .+|+...++...|.+++..++..|
T Consensus 229 lG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav 308 (330)
T KOG2991|consen 229 LGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAV 308 (330)
T ss_pred HHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344667788999998864 6777777888888888888887777654 788888888888888887777666
Q ss_pred H
Q 019982 106 R 106 (333)
Q Consensus 106 K 106 (333)
+
T Consensus 309 ~ 309 (330)
T KOG2991|consen 309 G 309 (330)
T ss_pred c
Confidence 4
No 233
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=69.91 E-value=38 Score=32.33 Aligned_cols=56 Identities=18% Similarity=0.370 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTV 105 (333)
Q Consensus 46 s~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~Tv 105 (333)
..+.+|..+|+.++.+|+.....+++++..|..+.. .-.+|-..|.+|+..|.+.|
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e----~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSE----GLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcccHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555544443 34444444444444444443
No 234
>PRK04406 hypothetical protein; Provisional
Probab=69.91 E-value=33 Score=27.38 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019982 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (333)
Q Consensus 66 i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 128 (333)
+..|++|+..||..+. .-++-.+ .|..+|-+.++++++|+.==+.|.+.|.+
T Consensus 6 ~~~le~Ri~~LE~~lA----fQE~tIe-------~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 6 IEQLEERINDLECQLA----FQEQTIE-------ELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777777775443 3222222 23344444444555554444444444443
No 235
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=69.90 E-value=46 Score=38.40 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=45.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------------DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~-------------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RD 111 (333)
.++|++....|..++.+++.+...+-.|...|+..+. ..|....+-.+.|-++++.|-..-++|..=
T Consensus 504 lsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~ 583 (1195)
T KOG4643|consen 504 LSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKY 583 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4667777777777777777776666666666665444 333333333444444555554455555555
Q ss_pred HHHHHHHHHH
Q 019982 112 VSKLEVFRKT 121 (333)
Q Consensus 112 vaKLE~FKk~ 121 (333)
+.+|++.+++
T Consensus 584 idaL~alrrh 593 (1195)
T KOG4643|consen 584 IDALNALRRH 593 (1195)
T ss_pred HHHHHHHHHH
Confidence 6666666655
No 236
>PRK02793 phi X174 lysis protein; Provisional
Probab=69.63 E-value=23 Score=27.88 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 019982 92 ERLSKENEALTNTVRKLQR 110 (333)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~R 110 (333)
.+.+++-+.|...++.|..
T Consensus 32 ~~Qq~~I~~L~~~l~~L~~ 50 (72)
T PRK02793 32 TAHEMEMAKLRDHLRLLTE 50 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555543
No 237
>PRK01156 chromosome segregation protein; Provisional
Probab=69.62 E-value=73 Score=34.94 Aligned_cols=7 Identities=14% Similarity=0.320 Sum_probs=2.7
Q ss_pred Hhhhhhc
Q 019982 307 RKTDEVF 313 (333)
Q Consensus 307 ~KAeeIF 313 (333)
.-|+.||
T Consensus 874 ~~~d~ii 880 (895)
T PRK01156 874 SVADVAY 880 (895)
T ss_pred HhcCeEE
Confidence 3344433
No 238
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=69.56 E-value=43 Score=33.31 Aligned_cols=64 Identities=25% Similarity=0.291 Sum_probs=35.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSK---ENEALTNTVRKL 108 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~----------~rL~~a~~e~~kL~k---E~~sLa~TvKKL 108 (333)
++.||.+.+.+++.-..-..-|.+|+.+-..||.+-. .||-+|.+.|+=|.. |+.+|..-|.+|
T Consensus 93 ~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRL 169 (333)
T KOG1853|consen 93 ESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRL 169 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4455555554444433333344444444444444322 788888888877754 456666666555
No 239
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=69.55 E-value=99 Score=31.24 Aligned_cols=54 Identities=15% Similarity=0.257 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 019982 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLA--EKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 28 EQLdvArkIts~A~atRVs~LEsE~~~LR~~la--EKd~~i~~Lq~rv~~le~aL~ 81 (333)
++||-...=...++..++..-+..+..|+..|. --...+..++.++..+...|.
T Consensus 267 q~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~rL~~~~P~~~l~~~~q~L~~l~~rL~ 322 (438)
T PRK00286 267 QRLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQ 322 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 356656555667777888877777777777663 223445555555555554444
No 240
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=69.46 E-value=1e+02 Score=31.31 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=25.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~ 78 (333)
.+.+|...++++...+.+++...+..+..++..+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 200 (457)
T TIGR01000 162 KSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISN 200 (457)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355666677777777777777777777776666664444
No 241
>PRK00106 hypothetical protein; Provisional
Probab=69.07 E-value=1.3e+02 Score=32.18 Aligned_cols=16 Identities=6% Similarity=0.117 Sum_probs=10.6
Q ss_pred HHHHHHHHhhcccccC
Q 019982 116 EVFRKTLVQSLKDDED 131 (333)
Q Consensus 116 E~FKk~LmqSLqeD~~ 131 (333)
|-.|..||+.+.++-.
T Consensus 168 ~eak~~l~~~~~~~~~ 183 (535)
T PRK00106 168 AEAREIILAETENKLT 183 (535)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3467777777776643
No 242
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=68.98 E-value=45 Score=29.91 Aligned_cols=69 Identities=20% Similarity=0.330 Sum_probs=40.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk 120 (333)
+--||..|-.+...+++++.+.........+..... ..++..++.+|-..|-..+++...|+. ++||
T Consensus 116 ~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~----------~~~~~~~~~~ei~~lk~el~~~~~~~~---~Lkk 182 (192)
T PF05529_consen 116 VIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKL----------LKEENKKLSEEIEKLKKELEKKEKEIE---ALKK 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh----------hhhhhhhhHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 457888887777777776665544444433322211 335556666666666666666555554 5566
Q ss_pred HH
Q 019982 121 TL 122 (333)
Q Consensus 121 ~L 122 (333)
+.
T Consensus 183 Q~ 184 (192)
T PF05529_consen 183 QS 184 (192)
T ss_pred HH
Confidence 54
No 243
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=68.90 E-value=55 Score=30.78 Aligned_cols=58 Identities=14% Similarity=0.283 Sum_probs=38.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIA-------ELQSQIESIYSSLS------DKLGQAQADKERLSKE 97 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~-------~Lq~rv~~le~aL~------~rL~~a~~e~~kL~kE 97 (333)
.+|.+|-.||-.+..|-.++.|+-+... .|..+|..++..|. +|+..+++.+.|-+.|
T Consensus 76 rvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~ 146 (189)
T TIGR02132 76 NVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDE 146 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhH
Confidence 3788888999999988888888766665 34445555555444 5666666654444433
No 244
>PF14282 FlxA: FlxA-like protein
Probab=68.37 E-value=28 Score=29.07 Aligned_cols=59 Identities=27% Similarity=0.425 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019982 63 DSRIAELQSQIESIYSSLSDKLGQAQA-DKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (333)
Q Consensus 63 d~~i~~Lq~rv~~le~aL~~rL~~a~~-e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L 122 (333)
|..|+.|++++..|...|. .|....+ ....-.+-...|-..+.-|...|+.|..=+..-
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~-~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQ-ELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666655554 2222000 111223344455555666666666555444333
No 245
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.26 E-value=51 Score=38.52 Aligned_cols=81 Identities=22% Similarity=0.237 Sum_probs=39.2
Q ss_pred cCCCChhhhHHHHHH-----HHHHHHHHhhhhhHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Q 019982 21 VLPSDPFEQLDVARK-----ITSIAISTRVSDLESEHSALRSQLA--------------EKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 21 VLPsDPyEQLdvArk-----Its~A~atRVs~LEsE~~~LR~~la--------------EKd~~i~~Lq~rv~~le~aL~ 81 (333)
|.+-+|.+==++.+. +-.+++..++..||..++.||.... .=...|+.|..+|.++|.++.
T Consensus 772 ~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~ 851 (1293)
T KOG0996|consen 772 VTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVL 851 (1293)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555565543333332 2233444444444444444444333 223355666666667776654
Q ss_pred ------HHHHHHHHHHHHHHHHHHHH
Q 019982 82 ------DKLGQAQADKERLSKENEAL 101 (333)
Q Consensus 82 ------~rL~~a~~e~~kL~kE~~sL 101 (333)
.+|+...+-.+.|-+|.+.|
T Consensus 852 k~~~d~~~l~~~~~~ie~l~kE~e~~ 877 (1293)
T KOG0996|consen 852 KKVVDKKRLKELEEQIEELKKEVEEL 877 (1293)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555554
No 246
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=68.22 E-value=1e+02 Score=30.94 Aligned_cols=84 Identities=18% Similarity=0.285 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-------HHHHHHHHHHHHHH
Q 019982 32 VARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DK-------LGQAQADKERLSKE 97 (333)
Q Consensus 32 vArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~-------~r-------L~~a~~e~~kL~kE 97 (333)
+-..|..-++-.|+..||.|-..||.....=+.....++++-..|=..+. .. |..-.+++...++|
T Consensus 156 ~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEE 235 (306)
T PF04849_consen 156 SQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEE 235 (306)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677889999999999999998776544333333333222211111 22 23444555555555
Q ss_pred HHHHHHHHHHHhhhHHHH
Q 019982 98 NEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 98 ~~sLa~TvKKL~RDvaKL 115 (333)
-.+|..+|-+|++-+..+
T Consensus 236 It~LlsqivdlQ~r~k~~ 253 (306)
T PF04849_consen 236 ITSLLSQIVDLQQRCKQL 253 (306)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666655555555444
No 247
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=68.16 E-value=40 Score=28.96 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019982 86 QAQADKERLSKENEALTNTVRKL 108 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL 108 (333)
...+||..|.-||+.|-.-+.++
T Consensus 33 el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 33 ELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 77788888888888776655544
No 248
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=68.13 E-value=48 Score=32.72 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 019982 86 QAQADKERLSKENEALTNTVRKLQR 110 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~R 110 (333)
....+.....+|+..|...++...+
T Consensus 253 ~l~~~~~~~~~e~~~l~~~~~~~~~ 277 (344)
T PF12777_consen 253 ALQKEYEEAQKEKQELEEEIEETER 277 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444455555444444443
No 249
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=68.00 E-value=36 Score=34.36 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=20.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019982 102 TNTVRKLQRDVSKLEVFRKTLVQSLK 127 (333)
Q Consensus 102 a~TvKKL~RDvaKLE~FKk~LmqSLq 127 (333)
-.+|+.+-+|+.+|..=||+|-+|+.
T Consensus 84 E~~V~~it~dIk~LD~AKrNLT~SIT 109 (383)
T PF04100_consen 84 EQMVQEITRDIKQLDNAKRNLTQSIT 109 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888888888876653
No 250
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=67.79 E-value=1e+02 Score=36.26 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=30.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL-------SDKLGQAQADKERLSKENEALTNTV 105 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL-------~~rL~~a~~e~~kL~kE~~sLa~Tv 105 (333)
.++..++.++...++.+++-...+..++.++..++..+ ..+|..+.++...+.+|...+...+
T Consensus 882 ~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~ 951 (1353)
T TIGR02680 882 ARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEAL 951 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433 2555566666555555555555444
No 251
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=67.63 E-value=2.7 Score=27.11 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHHhhccccHHHHHHhhhhhcCCCChh
Q 019982 281 SYEQFAIFLANVKELNAHKQTKEETLRKTDEVFGPENKD 319 (333)
Q Consensus 281 SYEQFsaFLANIKELNAhkQTREETL~KAeeIFG~~Nkd 319 (333)
++...+.++....++..=.+--++.|.-.+++||++|+|
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 355667777777777777777889999999999999986
No 252
>PRK10869 recombination and repair protein; Provisional
Probab=67.59 E-value=26 Score=36.91 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=31.5
Q ss_pred CChhhhHHHHHHHHH-HHHHHhhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 24 SDPFEQLDVARKITS-IAISTRVSD-------LESEHSALRSQLAEKDSRIAELQSQIESIY 77 (333)
Q Consensus 24 sDPyEQLdvArkIts-~A~atRVs~-------LEsE~~~LR~~laEKd~~i~~Lq~rv~~le 77 (333)
-||..||++=-.+.. -.+...+.. +..+...|+.+-.++.+.+.-|+-++.+++
T Consensus 137 l~~~~~~~lLD~~~~~~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~ 198 (553)
T PRK10869 137 LKPEHQKTLLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELN 198 (553)
T ss_pred cCHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 489999987766654 334444444 444455555555555555566665555554
No 253
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=67.41 E-value=58 Score=34.45 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (333)
Q Consensus 47 ~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~ 78 (333)
.|=+++..||.++++=......|+++-+.|..
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666655555543
No 254
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=67.27 E-value=1e+02 Score=34.23 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 30 LdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
++-|+++..-.- .++..|=.++...|.++.++.+.++.+++++..+...|.
T Consensus 504 i~~A~~~~~~~~-~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~ 554 (782)
T PRK00409 504 IEEAKKLIGEDK-EKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELE 554 (782)
T ss_pred HHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666654322 244444445555555555555555555444444444444
No 255
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=67.16 E-value=53 Score=25.19 Aligned_cols=53 Identities=19% Similarity=0.355 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHH
Q 019982 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLS-KENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 60 aEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~-kE~~sLa~TvKKL~RDvaKLE 116 (333)
.+|...|.+++..+.+++..|. +-.-|...+- .+|..+...|+....++.+|+
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~----qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk 74 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLK----QMELEVRSLPPSERNQYKSKLRSYRSELKKLK 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777788888888777776665 4444444443 788888888888888888764
No 256
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=66.87 E-value=32 Score=27.63 Aligned_cols=64 Identities=25% Similarity=0.315 Sum_probs=42.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 019982 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLG-QAQADKERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~-~a~~e~~kL~kE~~sLa~TvKKL~ 109 (333)
-|++.-+-.||.|.+-|+-..+ +|++++..++.++..|.+ ....+...|.+.-+.=+.+|.+|.
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~-------~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L~ 77 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQ-------ELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKLY 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888999999999987665 466667777666652222 333455666666666666666664
No 257
>PLN03188 kinesin-12 family protein; Provisional
Probab=66.87 E-value=68 Score=37.80 Aligned_cols=83 Identities=20% Similarity=0.315 Sum_probs=41.9
Q ss_pred HHHHHhhhhhHHH-----------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 39 IAISTRVSDLESE-----------HSALRSQLAEKD---SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (333)
Q Consensus 39 ~A~atRVs~LEsE-----------~~~LR~~laEKd---~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~T 104 (333)
+|+|.-+|.|-.| -..|+.||-+-. +...||==|+-++|.++. .|.+.-+....|+..|-..
T Consensus 1158 ~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~----~a~~r~~~~eqe~~~~~k~ 1233 (1320)
T PLN03188 1158 NALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALT----VAQKRAMDAEQEAAEAYKQ 1233 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 4555555555444 444444443222 223344445555555544 3334444455555555555
Q ss_pred HHHHhhhH-HHHHHHHHHHHhh
Q 019982 105 VRKLQRDV-SKLEVFRKTLVQS 125 (333)
Q Consensus 105 vKKL~RDv-aKLE~FKk~LmqS 125 (333)
+.||.|.- --+.++|..|-.|
T Consensus 1234 ~~klkrkh~~e~~t~~q~~aes 1255 (1320)
T PLN03188 1234 IDKLKRKHENEISTLNQLVAES 1255 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 66666666 5566777666433
No 258
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=66.67 E-value=49 Score=36.68 Aligned_cols=77 Identities=26% Similarity=0.335 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-Hhhc
Q 019982 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL-VQSL 126 (333)
Q Consensus 50 sE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~--~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L-mqSL 126 (333)
.++.+|+.++. ++.++++|...+..++..|+ .+.. ...........+.+...++++...+++++..+..| .+.|
T Consensus 481 ~el~~l~~~i~-~~~~~~~l~~e~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~e~l~~~~e~~~~~~~~~~~~~l 557 (908)
T COG0419 481 LELEELEEELS-REKEEAELREEIEELEKELRELEEEL--IELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQL 557 (908)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35566666666 26666666666666666665 2222 22233444445566666666666666666666665 4444
Q ss_pred ccc
Q 019982 127 KDD 129 (333)
Q Consensus 127 qeD 129 (333)
+++
T Consensus 558 ~~e 560 (908)
T COG0419 558 KEE 560 (908)
T ss_pred HHH
Confidence 443
No 259
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=66.60 E-value=1.1e+02 Score=31.18 Aligned_cols=90 Identities=19% Similarity=0.329 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH---HHHH-----
Q 019982 32 VARKITSIAISTRVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS--DKLGQAQADKE---RLSK----- 96 (333)
Q Consensus 32 vArkIts~A~atRVs~LEsE~~~LR~~laEK-----d~~i~~Lq~rv~~le~aL~--~rL~~a~~e~~---kL~k----- 96 (333)
|+++|....=.-.+..++.+...|.++|.+- ...+.+|-.+++.|...+. .++....++.. +|.+
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~~~~e~~~~~ell~~e~D~ 91 (367)
T PRK00578 12 LDEKLENIRGVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEELLELAEEEDDE 91 (367)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 6677776666667777788888888777542 2334555556666665555 44555544433 2321
Q ss_pred -HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019982 97 -ENEALTNTVRKLQRDVSKLEVFRKTLV 123 (333)
Q Consensus 97 -E~~sLa~TvKKL~RDvaKLE~FKk~Lm 123 (333)
-++.+...++.|...+.+|| ++ .|+
T Consensus 92 el~~~a~~e~~~l~~~l~~le-~~-~ll 117 (367)
T PRK00578 92 ETLAEAEAELKALEKKLAALE-LE-RLL 117 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HH-Hhc
Confidence 12345577888888888888 44 444
No 260
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=66.59 E-value=64 Score=25.61 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=11.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019982 101 LTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (333)
Q Consensus 101 La~TvKKL~RDvaKLE~FKk~LmqSLq 127 (333)
|-...+.|..++++|...-.-+-+-|+
T Consensus 77 l~~q~~~l~~~l~~l~~~~~~~e~~l~ 103 (127)
T smart00502 77 LEQQLESLTQKQEKLSHAINFTEEALN 103 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455544444433333333
No 261
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=66.25 E-value=49 Score=36.94 Aligned_cols=20 Identities=40% Similarity=0.519 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019982 57 SQLAEKDSRIAELQSQIESI 76 (333)
Q Consensus 57 ~~laEKd~~i~~Lq~rv~~l 76 (333)
..|+|||+.|..|++.-+.|
T Consensus 446 DeLaEkdE~I~~lm~EGEkL 465 (961)
T KOG4673|consen 446 DELAEKDEIINQLMAEGEKL 465 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666544443
No 262
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=66.21 E-value=43 Score=28.92 Aligned_cols=57 Identities=23% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019982 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (333)
Q Consensus 68 ~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 128 (333)
+|+.++..|+..|. ...-.+..|.++|+.|-+++..|+-.-+-+.-.+.-|=-.+.|
T Consensus 13 el~n~La~Le~slE----~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~e 69 (107)
T PF09304_consen 13 ELQNRLASLERSLE----DEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDE 69 (107)
T ss_dssp -HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 263
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=65.78 E-value=32 Score=39.74 Aligned_cols=51 Identities=25% Similarity=0.442 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHH------HhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 019982 31 DVARKITSIAIS------TRVSDLESEHSALRSQLAEKDS-RIAELQSQIESIYSSLS 81 (333)
Q Consensus 31 dvArkIts~A~a------tRVs~LEsE~~~LR~~laEKd~-~i~~Lq~rv~~le~aL~ 81 (333)
|-|+||..+|+. .=+..|-.|+..||.+|..+++ ...+|++|++++|.-+.
T Consensus 346 drAkrIvN~avvNedpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~esekli~ 403 (1714)
T KOG0241|consen 346 DRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIK 403 (1714)
T ss_pred HHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHH
Confidence 789999999984 4456677899999999987554 46788888888776444
No 264
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=65.76 E-value=38 Score=34.19 Aligned_cols=55 Identities=15% Similarity=0.297 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 019982 64 SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (333)
Q Consensus 64 ~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FK 119 (333)
+.+..|+++++.++..+ ++|...++++.|..+-+..|..++.++.+.++.++.|.
T Consensus 242 ~~~~~l~~~~~~~~~~i-~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~ 296 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEI-EKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELI 296 (406)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555655555555 24444445555666677777777777777777777664
No 265
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=65.73 E-value=1.1e+02 Score=29.02 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 019982 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTN 103 (333)
Q Consensus 52 ~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~ 103 (333)
+.+||.-=+||-.++-+--.=+....+.|| .-++...+.|.||++||..|-.
T Consensus 22 ~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 22 VRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444444433444444444 4455778889999999988864
No 266
>PRK00295 hypothetical protein; Provisional
Probab=65.70 E-value=50 Score=25.76 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=13.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019982 101 LTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (333)
Q Consensus 101 La~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (333)
|..+|-+.++++++|+.=-+.|.+.|.+-
T Consensus 24 Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 24 LNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444455555544444444444443
No 267
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=65.34 E-value=75 Score=26.02 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019982 92 ERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (333)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~RDvaKLE~FKk 120 (333)
.+|..+++.|+....+.---..|||.--+
T Consensus 42 ~~l~~dr~rLa~eLD~~~ar~~~Le~~~~ 70 (89)
T PF13747_consen 42 QRLDADRSRLAQELDQAEARANRLEEANR 70 (89)
T ss_pred HHHHhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444444444444333333444444333
No 268
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=65.13 E-value=77 Score=30.54 Aligned_cols=71 Identities=20% Similarity=0.286 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019982 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (333)
Q Consensus 48 LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~ 121 (333)
+|.-+-.+-++|.+++..+++.+.+...++..+..--....+....|..+..++...++.|. .|||.-|+.
T Consensus 188 ~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~---ekme~e~~~ 258 (297)
T PF02841_consen 188 MENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLK---EKMEEEREQ 258 (297)
T ss_dssp HHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 34444555566777777777777777766666551111112223334444444444444443 344444443
No 269
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=65.05 E-value=58 Score=26.68 Aligned_cols=61 Identities=20% Similarity=0.380 Sum_probs=42.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019982 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (333)
Q Consensus 44 RVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lm 123 (333)
++.++.+|+.+.|.+ |+++|.|+-.||.+.. .-||......|+.++=+.+.|-.|-+...
T Consensus 2 KleKi~~eieK~k~K-------iae~Q~rlK~Le~qk~-------------E~EN~EIv~~VR~~~mtp~eL~~~L~~~~ 61 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEK-------IAELQARLKELEAQKT-------------EAENLEIVQMVRSMKMTPEELAAFLRAMK 61 (83)
T ss_pred hHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 456677777777755 5566666666665443 34666778888988888888988887764
Q ss_pred h
Q 019982 124 Q 124 (333)
Q Consensus 124 q 124 (333)
.
T Consensus 62 ~ 62 (83)
T PF14193_consen 62 S 62 (83)
T ss_pred h
Confidence 4
No 270
>PRK04406 hypothetical protein; Provisional
Probab=65.04 E-value=48 Score=26.46 Aligned_cols=42 Identities=10% Similarity=0.145 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019982 64 SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 64 ~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (333)
..|.+|+.|++-.|..+. ...+...+.+++.+.|...++.|.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe----~LN~~v~~Qq~~I~~L~~ql~~L~ 52 (75)
T PRK04406 11 ERINDLECQLAFQEQTIE----ELNDALSQQQLLITKMQDQMKYVV 52 (75)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555443 333333444455555555555553
No 271
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=65.04 E-value=1.3e+02 Score=31.68 Aligned_cols=72 Identities=18% Similarity=0.300 Sum_probs=55.0
Q ss_pred CCCCChHHHHhc---CCCCh-----------hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 019982 10 STFDLPEEVLQV---LPSDP-----------FEQLDVARKITSIAISTRVSDLESEHSALRSQLA--EKDSRIAELQSQI 73 (333)
Q Consensus 10 ~~f~Lp~eilaV---LPsDP-----------yEQLdvArkIts~A~atRVs~LEsE~~~LR~~la--EKd~~i~~Lq~rv 73 (333)
.||.|.|-|.-| -||.. -+||+=-++...+|+..++..-+..+..|+..+. .-++.+..-+.++
T Consensus 236 tD~tL~DfVAD~RApTPTaAAE~~vP~~~el~~~l~~~~~rL~~~~~~~l~~~~~~l~~l~~~l~~~~p~~~l~~~~q~l 315 (440)
T COG1570 236 TDFTLADFVADLRAPTPTAAAELVVPDSAELLQQLDQLQRRLHRALRRLLDQKKQRLEHLARRLQFRSPERLLSEQQQRL 315 (440)
T ss_pred CCccHHHhhhhccCCCchHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 488888876543 33332 3467777888889999999999999999998887 7778888888888
Q ss_pred HHHHHHHH
Q 019982 74 ESIYSSLS 81 (333)
Q Consensus 74 ~~le~aL~ 81 (333)
..++..|.
T Consensus 316 d~~~~rL~ 323 (440)
T COG1570 316 DELAIRLR 323 (440)
T ss_pred HHHHHHHH
Confidence 87776665
No 272
>smart00338 BRLZ basic region leucin zipper.
Probab=65.03 E-value=26 Score=26.29 Aligned_cols=25 Identities=40% Similarity=0.715 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 92 ERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
..|..||..|...|..|...+..|.
T Consensus 36 ~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 36 EQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555543
No 273
>smart00338 BRLZ basic region leucin zipper.
Probab=64.71 E-value=52 Score=24.67 Aligned_cols=38 Identities=29% Similarity=0.443 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (333)
Q Consensus 61 EKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa 102 (333)
-|...+.+|+.++..|+.+-. ....+...|..|+..|-
T Consensus 23 rKk~~~~~Le~~~~~L~~en~----~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 23 RKKAEIEELERKVEQLEAENE----RLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 356678888888887776554 33334444444444443
No 274
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=64.65 E-value=67 Score=33.47 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 30 LdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
|.--|+..-.-=..--++.|.=++.||..+.+..++..+||.+-..+|..|+
T Consensus 265 l~siRr~Cd~lP~~m~tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~ 316 (442)
T PF06637_consen 265 LESIRRTCDHLPKIMTTKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQ 316 (442)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4444554443334444566777899999999999999999999999999987
No 275
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=64.65 E-value=1.4e+02 Score=33.18 Aligned_cols=112 Identities=24% Similarity=0.286 Sum_probs=65.3
Q ss_pred ChHHHHhcCCCChhhhHHHHHHHHHHHHHHhhhhhH-HHHHHHH-H-------HHHHHHHHHHHHHHHHHHHHHHH----
Q 019982 14 LPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLE-SEHSALR-S-------QLAEKDSRIAELQSQIESIYSSL---- 80 (333)
Q Consensus 14 Lp~eilaVLPsDPyEQLdvArkIts~A~atRVs~LE-sE~~~LR-~-------~laEKd~~i~~Lq~rv~~le~aL---- 80 (333)
++-|.+.-+|..-..=|++..+---..+..|+-.+. .|...+| . ++.+.+.++.+|+..+.....-+
T Consensus 378 ~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~ 457 (698)
T KOG0978|consen 378 LRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEME 457 (698)
T ss_pred HHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555554444445444444455555555554 4445555 1 22233556666666554443111
Q ss_pred ---------H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 019982 81 ---------S-------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (333)
Q Consensus 81 ---------~-------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqS 125 (333)
| --|..+.|.|-+|-.|+...-..+|-|..+..+|+.-..+|-.+
T Consensus 458 t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~ 518 (698)
T KOG0978|consen 458 TIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKAS 518 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 23346677778888888888888888888888888777766544
No 276
>PRK10807 paraquat-inducible protein B; Provisional
Probab=64.58 E-value=1.3e+02 Score=31.99 Aligned_cols=94 Identities=15% Similarity=0.273 Sum_probs=47.5
Q ss_pred hcCCCChhhhHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q 019982 20 QVLPSDPFEQLDVARKITSIAISTRVSDL--ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--------DKLGQAQA 89 (333)
Q Consensus 20 aVLPsDPyEQLdvArkIts~A~atRVs~L--EsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~--------~rL~~a~~ 89 (333)
-|||+.|-.==+|..+|.. +..++.+| |.=+..|..-|.+=++.+..|+..+..++..+. ..|..+++
T Consensus 406 pvIPt~ps~l~~l~~~~~~--il~kin~lple~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL~ 483 (547)
T PRK10807 406 PIIPTVSGGLAQIQQKLME--ALDKINNLPLNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTLR 483 (547)
T ss_pred ceeecCCCCHHHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHH
Confidence 6888887542233444433 23333333 333445555555556666666655554443332 34445555
Q ss_pred HHHHHHHH-------HHHHHHHHHHHhhhHHHH
Q 019982 90 DKERLSKE-------NEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 90 e~~kL~kE-------~~sLa~TvKKL~RDvaKL 115 (333)
+.+++.++ ...|.+|++.|+|=+.-|
T Consensus 484 ~l~~~l~~~~~~s~~~~~l~~tl~~l~~~~r~l 516 (547)
T PRK10807 484 ELNRSMQGFQPGSPAYNKMVADMQRLDQVLREL 516 (547)
T ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHH
Confidence 55555554 344555555555555555
No 277
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=64.54 E-value=15 Score=34.42 Aligned_cols=36 Identities=19% Similarity=0.436 Sum_probs=23.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL 80 (333)
..++|++.-.|.+.+..++..+++||.+.+.++.-+
T Consensus 138 ~D~~eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~ 173 (192)
T COG5374 138 IDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLL 173 (192)
T ss_pred hhhhhcchHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 355666666677777666777777776666655433
No 278
>PF13514 AAA_27: AAA domain
Probab=64.51 E-value=60 Score=36.90 Aligned_cols=89 Identities=18% Similarity=0.300 Sum_probs=61.5
Q ss_pred HHHHHHHHH-----HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 019982 32 VARKITSIA-----ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEA 100 (333)
Q Consensus 32 vArkIts~A-----~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~------~rL~~a~~e~~kL~kE~~s 100 (333)
|+..+-+.+ +..-+..|+.|...|=..= -+...|..+-+++..++..+. .....+.++...+..+...
T Consensus 114 lg~~Lf~agaG~~~l~~~~~~L~~ea~~Lfkpr-g~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~ 192 (1111)
T PF13514_consen 114 LGQLLFSAGAGLGSLSQVLKQLDKEADELFKPR-GRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEE 192 (1111)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHHhhCCC-CCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 555555543 2233344444444442221 344567777778888887777 6677788888889999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHH
Q 019982 101 LTNTVRKLQRDVSKLEVFRKT 121 (333)
Q Consensus 101 La~TvKKL~RDvaKLE~FKk~ 121 (333)
|-..+++|..+..+||..++.
T Consensus 193 l~~~~~~l~~~~~~ler~~~~ 213 (1111)
T PF13514_consen 193 LRAELKELRAELRRLERLRRA 213 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998765
No 279
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=64.45 E-value=38 Score=35.28 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=15.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEK 62 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEK 62 (333)
+++.++..++.|+..||.+|.+-
T Consensus 113 ~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 113 VLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777664
No 280
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=64.42 E-value=61 Score=34.19 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRD 111 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RD 111 (333)
...++...+.++...+...+..|..+
T Consensus 387 el~e~leeie~eq~ei~e~l~~Lrk~ 412 (569)
T PRK04778 387 EILKQLEEIEKEQEKLSEMLQGLRKD 412 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 281
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=64.42 E-value=40 Score=28.92 Aligned_cols=51 Identities=25% Similarity=0.354 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 28 EQLDVARKITSIAISTRVSDLESEHSALRS------QLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 28 EQLdvArkIts~A~atRVs~LEsE~~~LR~------~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
.||+.|++= -=..||.+||.-...++. -++|+...|.+.+.+|...+..|.
T Consensus 31 ~qI~~Ak~~---gN~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~ 87 (115)
T PF06476_consen 31 KQIEYAKAH---GNQHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELK 87 (115)
T ss_pred HHHHHHHHc---CCHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555432 224689999999998875 356888888888989988888887
No 282
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=64.12 E-value=90 Score=27.31 Aligned_cols=74 Identities=23% Similarity=0.213 Sum_probs=46.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lmq 124 (333)
|.+|-.....|-++|+-=.+.|..|++.+...|..|. +-.+.-..|-.+++.+.+.+.+++.=.+.+++
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le-----------~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~ 90 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALE-----------RDYEYLQELEKNAKALEREREEEEKKAHPVLQ 90 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhccchhhc
Confidence 3444445556666676666777888888887777665 22233345666777777777776655466666
Q ss_pred hcccc
Q 019982 125 SLKDD 129 (333)
Q Consensus 125 SLqeD 129 (333)
-...+
T Consensus 91 ~~~~~ 95 (160)
T PF13094_consen 91 LDDSG 95 (160)
T ss_pred ccccc
Confidence 54443
No 283
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=64.10 E-value=71 Score=31.81 Aligned_cols=45 Identities=27% Similarity=0.333 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccc
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~ 130 (333)
+.++|+.++-.-+++|-.-|++|..--.-||.-||+-+-||.|-+
T Consensus 95 ~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfe 139 (333)
T KOG1853|consen 95 QLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFE 139 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHH
Confidence 344555555555556666666666656666666666655555543
No 284
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=64.08 E-value=11 Score=35.65 Aligned_cols=31 Identities=35% Similarity=0.527 Sum_probs=23.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQ 72 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~r 72 (333)
..|+..||.-+..|=.+|+|||..|.-||.|
T Consensus 135 ~~K~qemE~RIK~LhaqI~EKDAmIkVLQqr 165 (205)
T PF12240_consen 135 NRKCQEMENRIKALHAQIAEKDAMIKVLQQR 165 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777777777777777777777777755
No 285
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=63.81 E-value=44 Score=28.40 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=36.0
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 71 SQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 71 ~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
+++..+|.++. +.+....+....|.+||..|..--.+|.+-|.+++.
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555554 555577888899999999999999999888888876
No 286
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=63.63 E-value=47 Score=31.81 Aligned_cols=70 Identities=27% Similarity=0.317 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019982 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (333)
Q Consensus 52 ~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lm 123 (333)
+..+-.+|.+..+++.+|..+-.+|+..+. +|++...+|..-.-.++.-|.--.+...+||+ |+++++.+
T Consensus 120 ~~~l~srl~~~~~~~e~l~~~~~~L~~~~~el~~rik~~ied~~~~~~~~~vl~~l~~n~~~~v~--E~~r~~~~ 192 (217)
T COG1777 120 ISELISRLLEINREIEELSRAQTELQKQLNELMDRIKEEIEDKDGDMTERIVLEYLLKNGAADVE--ETSRRTVL 192 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhHHH--HHHhccch
Confidence 455566677778888888877777777776 88888888888877888888888888888877 55666544
No 287
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=63.43 E-value=16 Score=36.73 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 90 DKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 90 e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
+..+|...-.+++-+|.-|.+-|+.||
T Consensus 127 dvsNLksdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 127 DVSNLKSDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhcchHhhHHHHHHHHh
Confidence 334555555555555566665555554
No 288
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=63.22 E-value=1.5e+02 Score=30.31 Aligned_cols=53 Identities=19% Similarity=0.132 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 019982 29 QLDVARKITSIAISTRVSDLESEHSALRSQLA--EKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 29 QLdvArkIts~A~atRVs~LEsE~~~LR~~la--EKd~~i~~Lq~rv~~le~aL~ 81 (333)
+||-...=...|+..++..-+.....|+..|. .-...+...+.++..+...|.
T Consensus 263 rLd~l~~RL~~am~~~L~~~r~rL~~L~~RL~~~~P~~~L~~~~qrLd~L~~RL~ 317 (432)
T TIGR00237 263 RLDGFNVRLHRAFDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRKQ 317 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 55655556677888888888888887777664 222344445555555544443
No 289
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=63.12 E-value=1.2e+02 Score=27.78 Aligned_cols=38 Identities=18% Similarity=0.358 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHhhc
Q 019982 89 ADKERLSKENEALTNTVRKLQRDVSK-LEVFRKTLVQSL 126 (333)
Q Consensus 89 ~e~~kL~kE~~sLa~TvKKL~RDvaK-LE~FKk~LmqSL 126 (333)
.+...|+.||..|-.+++.-..=+.. +.-||++..+=+
T Consensus 70 ~qi~~Lq~EN~eL~~~leEhq~alelIM~KyReq~~~l~ 108 (181)
T PF05769_consen 70 RQIRQLQQENRELRQSLEEHQSALELIMSKYREQMSQLM 108 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588999999999999998888876 456776654433
No 290
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=63.10 E-value=97 Score=26.52 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=14.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQI 73 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv 73 (333)
.++...+..+..+|..|..-.....+.|.+|
T Consensus 17 ~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~Y 47 (132)
T PF07926_consen 17 EQEEDAEEQLQSLREDLESQAKIAQEAQQKY 47 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555444444444444443
No 291
>PRK04325 hypothetical protein; Provisional
Probab=63.03 E-value=49 Score=26.20 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (333)
Q Consensus 66 i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (333)
|.+|+.|++-.|..+. ...+...+.+++-+.|...++.|
T Consensus 11 i~~LE~klAfQE~tIe----~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 11 ITELEIQLAFQEDLID----GLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555444443332 22233333344444444444444
No 292
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=63.01 E-value=63 Score=25.72 Aligned_cols=30 Identities=17% Similarity=0.105 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 52 ~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
+..--..+..+|..|.+|+.++-.++..+.
T Consensus 25 l~~~~~ei~~~d~~le~l~~q~~k~~~~~~ 54 (80)
T PF11488_consen 25 LESRFKEIDSKDKELEELYQQDCKTEMEVK 54 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566788888888888877775554
No 293
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=62.92 E-value=32 Score=33.21 Aligned_cols=93 Identities=23% Similarity=0.225 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019982 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS-SLS---DKLGQAQADKERLSKENEALTNTVRKLQR 110 (333)
Q Consensus 35 kIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~-aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (333)
+.........+..+-.....++.-...|+....+.++|-+.+=+ ... .+..+......-|.+||+.|...|.-|.+
T Consensus 164 ~~~~s~~~~~~~~~~~K~~~~~~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~ 243 (269)
T KOG3119|consen 164 KPKSSGAKLKPQSTARKKSKLSSPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKK 243 (269)
T ss_pred CCCCcccccCCccchhhhccCCCchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444455555555667777777666543221 111 23334455667899999999999999999
Q ss_pred hHHHHHHHHHHHHhhcc
Q 019982 111 DVSKLEVFRKTLVQSLK 127 (333)
Q Consensus 111 DvaKLE~FKk~LmqSLq 127 (333)
.+++|..++.+.++-..
T Consensus 244 el~~~~~~~~~~~~~~~ 260 (269)
T KOG3119|consen 244 ELATLRRLFLQLPKPGG 260 (269)
T ss_pred HHHHHHHHHHhhccccC
Confidence 99999888888776543
No 294
>PRK12704 phosphodiesterase; Provisional
Probab=62.83 E-value=2.1e+02 Score=30.38 Aligned_cols=8 Identities=25% Similarity=0.551 Sum_probs=4.2
Q ss_pred HHHHHHHH
Q 019982 270 KEFFRQVR 277 (333)
Q Consensus 270 KEFFRQAR 277 (333)
-|....++
T Consensus 285 ee~~~~~~ 292 (520)
T PRK12704 285 EEMVEKAR 292 (520)
T ss_pred HHHHHHHH
Confidence 35555555
No 295
>PF13864 Enkurin: Calmodulin-binding
Probab=62.65 E-value=17 Score=29.66 Aligned_cols=56 Identities=21% Similarity=0.378 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 60 aEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
.|+..++..|+.+...|..+|+ +|-... |-....+-+..|-..++-|-.|+.+|+.
T Consensus 40 eER~~lL~~Lk~~~~el~~ey~-~lp~~~-DT~~~~~rK~~lE~~L~qlE~dI~~lsr 95 (98)
T PF13864_consen 40 EERQELLEGLKKNWDELNKEYQ-KLPFSI-DTLRKKRRKEELEKELKQLEKDIKKLSR 95 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCCccc-CCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4788899999999999999998 444442 2444445556666666666667666653
No 296
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=62.48 E-value=90 Score=29.47 Aligned_cols=63 Identities=17% Similarity=0.304 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019982 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (333)
Q Consensus 49 EsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~-------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RD 111 (333)
|.|+..|+.+..++...+.++..=+..+|..++ -.-..+..+..++.+||+.+..-+..+.+-
T Consensus 22 E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~s 91 (207)
T PF05010_consen 22 EEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKS 91 (207)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 344555555555555544444444444444433 122233444556666666665555544443
No 297
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=62.36 E-value=29 Score=36.59 Aligned_cols=16 Identities=13% Similarity=0.169 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 019982 65 RIAELQSQIESIYSSL 80 (333)
Q Consensus 65 ~i~~Lq~rv~~le~aL 80 (333)
.+.+-|.+.++||..|
T Consensus 70 ALteqQ~kasELEKqL 85 (475)
T PRK13729 70 ATTEMQVTAAQMQKQY 85 (475)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555444
No 298
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=62.20 E-value=18 Score=36.41 Aligned_cols=68 Identities=19% Similarity=0.404 Sum_probs=11.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (333)
+..++..|..|+..|+....|.-..|..+..+...++..|..|+..++++...|.+.-..+..+++.+
T Consensus 103 l~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~ 170 (370)
T PF02994_consen 103 LKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKEL 170 (370)
T ss_dssp ---------------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHH
Confidence 45677778888888887665554444444444333333333333344433333333333333333333
No 299
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=62.05 E-value=78 Score=25.05 Aligned_cols=80 Identities=24% Similarity=0.285 Sum_probs=40.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019982 36 ITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (333)
Q Consensus 36 Its~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (333)
|.++|++-=|--|=-=..+|++-+.+=.+.+..+++++..+-.+.. .......++-+.-.+.-+.+...|+.+..-|
T Consensus 5 I~Aiaf~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v 84 (90)
T PF06103_consen 5 IAAIAFAVLVIFLIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESV 84 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4444444444444344455566666666666666666665555544 3333444444444444455555555555544
Q ss_pred HHH
Q 019982 113 SKL 115 (333)
Q Consensus 113 aKL 115 (333)
..|
T Consensus 85 ~~l 87 (90)
T PF06103_consen 85 SEL 87 (90)
T ss_pred HHH
Confidence 443
No 300
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=62.00 E-value=59 Score=37.58 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 019982 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (333)
Q Consensus 48 LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~F 118 (333)
+-.|+..|+++|.+..+..+++++++.+.+..++ ...+-..++.+++..|...++.|.-.+++...+
T Consensus 147 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (1123)
T PRK11448 147 LQQEVLTLKQQLELQAREKAQSQALAEAQQQELV----ALEGLAAELEEKQQELEAQLEQLQEKAAETSQE 213 (1123)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3445556666665555555555555555554443 222222233344444444444444444443333
No 301
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=61.74 E-value=58 Score=38.10 Aligned_cols=32 Identities=19% Similarity=0.402 Sum_probs=16.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~l 76 (333)
|..||.+++++..++-+.....+++++++..+
T Consensus 780 v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~l 811 (1293)
T KOG0996|consen 780 VEKLERALSKMSDKARQHQEQLHELEERVRKL 811 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666555554444444444444333
No 302
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.61 E-value=42 Score=32.66 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 019982 92 ERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~ 109 (333)
++|+.|...|.+.++...
T Consensus 67 ~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 67 NTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 303
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=61.60 E-value=84 Score=35.82 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=12.1
Q ss_pred hHHHHHHHHhccCHHHHHHHHHHHHHHhhc
Q 019982 269 GKEFFRQVRNRLSYEQFAIFLANVKELNAH 298 (333)
Q Consensus 269 GKEFFRQARsRLSYEQFsaFLANIKELNAh 298 (333)
+|+|-|.|. +|+...+.=|+-
T Consensus 691 ~k~~~~~a~---------~~~~~l~~~~al 711 (980)
T KOG0980|consen 691 CKKCGREAL---------AFLVSLSSENAL 711 (980)
T ss_pred HHHHHHHHH---------HHHHHHhhhhHH
Confidence 566666553 566666665543
No 304
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=61.58 E-value=37 Score=28.49 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
+..++.+.+.+|++.|.+.-..|.++|..|
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444
No 305
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=61.24 E-value=2.7 Score=45.15 Aligned_cols=89 Identities=18% Similarity=0.394 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQR----- 110 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~------~rL~~a~~e~~kL~kE~~sLa~TvKKL~R----- 110 (333)
+.+...|-+++.+||+.+.+++....+++.++..++..+. .-|...-++...|..|-|.|-..+.|+.|
T Consensus 238 ~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~v 317 (713)
T PF05622_consen 238 SVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEV 317 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3455667788888888888888888888888888887764 22333334455566666665443333333
Q ss_pred -----hHHHHHHHHHHHHhhcccccC
Q 019982 111 -----DVSKLEVFRKTLVQSLKDDED 131 (333)
Q Consensus 111 -----DvaKLE~FKk~LmqSLqeD~~ 131 (333)
-+.-++-||+.+ +.|.+++.
T Consensus 318 e~YKkKLed~~~lk~qv-k~Lee~N~ 342 (713)
T PF05622_consen 318 EKYKKKLEDLEDLKRQV-KELEEDNA 342 (713)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 333344455554 77777775
No 306
>PF06246 Isy1: Isy1-like splicing family; InterPro: IPR009360 Isy1 protein is important in the optimisation of splicing [].; PDB: 1X4T_A.
Probab=61.19 E-value=35 Score=33.15 Aligned_cols=59 Identities=14% Similarity=0.190 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019982 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 51 E~~~LR~~laEKd~~i~~Lq~rv~~le~aL~--~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (333)
+|..|++-.-=+-.+|.|+-.+|+.+...-- -+++...||.+||.+|+..--..++.|.
T Consensus 38 ~v~~l~~ae~WR~~ii~EIs~kv~~Iqd~~L~E~~IRdLNDeINkL~rEK~~WE~rI~~LG 98 (255)
T PF06246_consen 38 EVKSLPEAEKWRRQIIKEISRKVTRIQDPSLGEFQIRDLNDEINKLIREKRHWERRIKELG 98 (255)
T ss_dssp T---HHHHHHHHHHHHHHHHHHHHHHHH--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444455444556677888888887765544 8899999999999999999999999886
No 307
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=61.17 E-value=94 Score=33.61 Aligned_cols=87 Identities=20% Similarity=0.327 Sum_probs=45.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADK-ERLSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~--~rL~~a~~e~-~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
+.+.+..++.|+..|+..+.+-...+.+.+.....+|.++. .|+...+.+. +++.+=..-+.....||.-=-.+.|.
T Consensus 340 l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~ 419 (594)
T PF05667_consen 340 LESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEK 419 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666 4443333322 22222222223333333333344555
Q ss_pred HHHHHHhhcc
Q 019982 118 FRKTLVQSLK 127 (333)
Q Consensus 118 FKk~LmqSLq 127 (333)
.|+-|+.-+.
T Consensus 420 ~R~pL~~e~r 429 (594)
T PF05667_consen 420 HRAPLIEEYR 429 (594)
T ss_pred HHhHHHHHHH
Confidence 6666654443
No 308
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=61.08 E-value=49 Score=28.43 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 69 LQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 69 Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
|=+++.++|.++. ..|....+....|.+||..|..--.+|.+-+++++
T Consensus 6 lfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 6 IFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345555555555 45556777778888888888888888887777663
No 309
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=60.98 E-value=31 Score=38.44 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=38.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 019982 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEAL 101 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~--~rL~~a~~e~~kL~kE~~sL 101 (333)
.++.+||.+++.=++.+-.-.+..+.||+|++.+|..|+ .|+..+.+-+.+|++.++.|
T Consensus 91 d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~rae~lpeveael~qr~~al 151 (916)
T KOG0249|consen 91 DLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLRAETLPEVEAELAQRNAAL 151 (916)
T ss_pred cchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHHH
Confidence 355667777776666666666777888999998888888 55444444444454444443
No 310
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=60.94 E-value=1e+02 Score=31.33 Aligned_cols=90 Identities=19% Similarity=0.323 Sum_probs=45.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH--HHHHHHHHHHH---HHHH------HHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKD-----SRIAELQSQIESIYSSLS--DKLGQAQADKE---RLSK------ENEALTNT 104 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd-----~~i~~Lq~rv~~le~aL~--~rL~~a~~e~~---kL~k------E~~sLa~T 104 (333)
+..++..++.+...|...+++-+ ....++-+++..|+..+. .++....++.. .|.+ -..-+...
T Consensus 4 ~~~~~e~~~~~~~~le~~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~~~~~~~~~~~~~~l~~~e~D~~~~~~~~~e 83 (359)
T PRK00591 4 MLDKLEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEMLEEESDPEMREMAKEE 83 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 34456666666666666654321 222233334444443333 23333332222 2221 12234456
Q ss_pred HHHHhhhHHHHHH-HHHHHHhhccccc
Q 019982 105 VRKLQRDVSKLEV-FRKTLVQSLKDDE 130 (333)
Q Consensus 105 vKKL~RDvaKLE~-FKk~LmqSLqeD~ 130 (333)
+.+|..+|.+||. ++..||-+-..|.
T Consensus 84 ~~~l~~~l~~~e~~l~~~ll~~~~~D~ 110 (359)
T PRK00591 84 LKELEERLEELEEELKILLLPKDPNDD 110 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 7889999999986 6666666544443
No 311
>PRK00736 hypothetical protein; Provisional
Probab=60.91 E-value=62 Score=25.26 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q 019982 66 IAELQSQIESIYSSL 80 (333)
Q Consensus 66 i~~Lq~rv~~le~aL 80 (333)
|.+|+.|++-.|..+
T Consensus 7 i~~LE~klafqe~ti 21 (68)
T PRK00736 7 LTELEIRVAEQEKTI 21 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666655555433
No 312
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=60.76 E-value=34 Score=31.41 Aligned_cols=30 Identities=33% Similarity=0.580 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
....||.+|.+|+..|...++.|...+.+|
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555
No 313
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=60.73 E-value=1.8e+02 Score=28.80 Aligned_cols=29 Identities=14% Similarity=0.350 Sum_probs=24.6
Q ss_pred HHHHhhhHHHHHHHHHHHHhhcccccCCC
Q 019982 105 VRKLQRDVSKLEVFRKTLVQSLKDDEDAS 133 (333)
Q Consensus 105 vKKL~RDvaKLE~FKk~LmqSLqeD~~~~ 133 (333)
++.|.+-+.|++.||+.||..|.+.=++.
T Consensus 156 ~~el~~K~~~~k~~~e~Ll~~LgeFLeeH 184 (268)
T PF11802_consen 156 FQELKTKIEKIKEYKEKLLSFLGEFLEEH 184 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788888999999999999999886553
No 314
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=60.62 E-value=1.1e+02 Score=31.64 Aligned_cols=37 Identities=11% Similarity=0.202 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 019982 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (333)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~F 118 (333)
.++..+..+..+|..+...|..-+.+|.+.+++|..-
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~ 174 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELNALLTG 174 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4555555666666666666666666666666666543
No 315
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=60.18 E-value=1.7e+02 Score=32.45 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (333)
Q Consensus 30 LdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL 80 (333)
++-|++|.. ....++..|=.++...|.++.++.+.+..+++.+..+...|
T Consensus 499 i~~A~~~~~-~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l 548 (771)
T TIGR01069 499 IEQAKTFYG-EFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKEL 548 (771)
T ss_pred HHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777654 24445554444444444444444444444443333333333
No 316
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=60.18 E-value=28 Score=32.82 Aligned_cols=50 Identities=26% Similarity=0.441 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHhhcccccCC
Q 019982 82 DKLGQAQADKERLSKENEALTNTVR-KLQRDVSKLEVFRKTLVQSLKDDEDA 132 (333)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvK-KL~RDvaKLE~FKk~LmqSLqeD~~~ 132 (333)
.||+.++.|+.+|.-+...|..-|. +|+--+.-+..+| .++|-||+||.+
T Consensus 23 ~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LK-e~NqkLqedNqE 73 (195)
T PF10226_consen 23 RRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLK-EVNQKLQEDNQE 73 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 7888999999999999999988886 7888888888876 689999999874
No 317
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=59.99 E-value=2.4e+02 Score=29.93 Aligned_cols=7 Identities=14% Similarity=0.340 Sum_probs=3.5
Q ss_pred HHHHHHH
Q 019982 271 EFFRQVR 277 (333)
Q Consensus 271 EFFRQAR 277 (333)
|.+..||
T Consensus 280 e~~~~~~ 286 (514)
T TIGR03319 280 EMVEKAT 286 (514)
T ss_pred HHHHHHH
Confidence 4555554
No 318
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=59.96 E-value=1.5e+02 Score=31.64 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 019982 68 ELQSQIESIYSSLS 81 (333)
Q Consensus 68 ~Lq~rv~~le~aL~ 81 (333)
+|==|+..+|.+..
T Consensus 431 Ellvrl~eaeea~~ 444 (488)
T PF06548_consen 431 ELLVRLREAEEAAS 444 (488)
T ss_pred HHHHHHHhHHHHHH
Confidence 34444444444443
No 319
>PRK00846 hypothetical protein; Provisional
Probab=59.94 E-value=52 Score=26.70 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhccccc
Q 019982 101 LTNTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (333)
Q Consensus 101 La~TvKKL~RDvaKLE~FKk~LmqSLqeD~ 130 (333)
|..+|-+.++.+++|..=-+.|..-|.+-.
T Consensus 32 LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 32 LSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555555555555555555544
No 320
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.89 E-value=2e+02 Score=32.58 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=12.3
Q ss_pred CCCChhhhHHHHHHHHHHHHHHhhhhhHHHH
Q 019982 22 LPSDPFEQLDVARKITSIAISTRVSDLESEH 52 (333)
Q Consensus 22 LPsDPyEQLdvArkIts~A~atRVs~LEsE~ 52 (333)
+-+|-|.++.-.-+=-.-.+..++..|+.++
T Consensus 173 ~g~~~y~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (1042)
T TIGR00618 173 FPLDQYTQLALMEFAKKKSLHGKAELLTLRS 203 (1042)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555443332222233334444444433
No 321
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=59.86 E-value=86 Score=31.96 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019982 100 ALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (333)
Q Consensus 100 sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 128 (333)
.|..+.++|...+.+|+.=.+.|...|+.
T Consensus 379 ~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 379 KLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444444444443
No 322
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=59.81 E-value=3 Score=46.18 Aligned_cols=91 Identities=26% Similarity=0.397 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------DKLGQAQADKERLSKENEALTNTVRK 107 (333)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~-----------~rL~~a~~e~~kL~kE~~sLa~TvKK 107 (333)
.++..++..||.|+..||.++.|-.....+|+.+++.+...|. .|.....+-.-+|..+-..|-..+..
T Consensus 260 ~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~ 339 (859)
T PF01576_consen 260 QALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEE 339 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999888899999999998888887 23334455567888888888888888
Q ss_pred HhhhHHHHHHHHHHHHhhcccc
Q 019982 108 LQRDVSKLEVFRKTLVQSLKDD 129 (333)
Q Consensus 108 L~RDvaKLE~FKk~LmqSLqeD 129 (333)
++.-+++||.=|+.|..=+.|=
T Consensus 340 ~~~~~~~LeK~k~rL~~EleDl 361 (859)
T PF01576_consen 340 ANAKVSSLEKTKKRLQGELEDL 361 (859)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889988888876555443
No 323
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=59.77 E-value=22 Score=35.03 Aligned_cols=58 Identities=24% Similarity=0.414 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019982 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKE-NEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (333)
Q Consensus 65 ~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE-~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (333)
...+|++|-..|+.++. +.+.+++++.+| +.+.+.+...|.+ ++..||.-|+.||||=
T Consensus 5 ~L~eL~qrk~~Lq~eIe----~LerR~~ri~~EmrtsFaG~Sq~lA~---RVqGFkdYLvGsLQDL 63 (283)
T PF11285_consen 5 ALKELEQRKQALQIEIE----QLERRRERIEKEMRTSFAGQSQDLAI---RVQGFKDYLVGSLQDL 63 (283)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccccchHHHHH---HHhhhHHHHHHHHHHH
Confidence 45667777666666554 666677777777 3456666666665 3578999999999974
No 324
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=59.61 E-value=1.6e+02 Score=27.83 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=46.0
Q ss_pred ChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 25 DPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 25 DPyEQLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
-+.-.+.++.+.....+..-+........++.+.+.+++..+..+++....|+..+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~a~~~~~r~~~~~~~~~~~~~~~~~~~~aq~L~~k~r 195 (247)
T PF14661_consen 139 ASALRLAEAFRLKPQDLHELLARILAHRNSFLQILQEKDAARQKYQEFAQLLRKKYR 195 (247)
T ss_pred chhhhhhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578888888888888888888888999999999999998888877776665554
No 325
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=59.56 E-value=62 Score=36.86 Aligned_cols=73 Identities=12% Similarity=0.224 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 46 s~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~----------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
-+|-++...||..|.|-.+..+.+-++...||..-. .++...+++...|..+-..+..++.-|.--+..|
T Consensus 326 mkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~ 405 (1265)
T KOG0976|consen 326 MKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRL 405 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 456678888888888877777666666666664332 4455555555555555555555544444444444
Q ss_pred HHH
Q 019982 116 EVF 118 (333)
Q Consensus 116 E~F 118 (333)
|..
T Consensus 406 e~~ 408 (1265)
T KOG0976|consen 406 EQG 408 (1265)
T ss_pred hhc
Confidence 333
No 326
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=59.30 E-value=24 Score=36.74 Aligned_cols=72 Identities=29% Similarity=0.406 Sum_probs=53.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019982 37 TSIAISTRVSDLESEHSALRSQLAEKD--SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (333)
Q Consensus 37 ts~A~atRVs~LEsE~~~LR~~laEKd--~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (333)
....+..|+..-|.|+.+||.+|..|. ..-.||+.|+..|-..|. +-....+.|..||++|.-...+|.+.+
T Consensus 356 ~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li----~KQ~~lE~l~~ek~al~lqlErl~~~l 429 (511)
T PF09787_consen 356 QKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLI----QKQTQLESLGSEKNALRLQLERLETQL 429 (511)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHH----HHHHHHHHHHhhhhhccccHHHHHHHH
Confidence 445677778888899999999888776 334578888877776666 556666789999999988877776543
No 327
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=58.99 E-value=1.5e+02 Score=27.29 Aligned_cols=84 Identities=14% Similarity=0.214 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Q 019982 30 LDVARKITSIAISTRVSDLESEHSALRSQLAE-------KDSRIAELQSQIESIYSSLS----------DKLGQAQADKE 92 (333)
Q Consensus 30 LdvArkIts~A~atRVs~LEsE~~~LR~~laE-------Kd~~i~~Lq~rv~~le~aL~----------~rL~~a~~e~~ 92 (333)
++.-..-+---|.+..+++|.|..+|-....| ....++.++.+|...+++|- --+.+|++--+
T Consensus 43 IErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~n 122 (159)
T PF04949_consen 43 IERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFN 122 (159)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334445666777888877766443332 34578889999999998886 33567777778
Q ss_pred HHHHHHHHHHHHHHHHhhhHH
Q 019982 93 RLSKENEALTNTVRKLQRDVS 113 (333)
Q Consensus 93 kL~kE~~sLa~TvKKL~RDva 113 (333)
...+|++.|+...--|--.-+
T Consensus 123 EknkeK~~Lv~~L~eLv~eSE 143 (159)
T PF04949_consen 123 EKNKEKAQLVTRLMELVSESE 143 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 889999999887777655433
No 328
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.83 E-value=1e+02 Score=30.27 Aligned_cols=60 Identities=27% Similarity=0.406 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVR 106 (333)
Q Consensus 47 ~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvK 106 (333)
.-++++..+-....+=...|..|..+|..+..... .+......+..+|.+|-+.|-+.++
T Consensus 35 ~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 35 NQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333333444444333333222 2223444444444444444444443
No 329
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=58.75 E-value=44 Score=24.37 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRD 111 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RD 111 (333)
....++..|.+||+.|.+.|..|..-
T Consensus 16 ~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 16 SLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567778888888888888877643
No 330
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=58.54 E-value=1.1e+02 Score=29.96 Aligned_cols=67 Identities=15% Similarity=0.292 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019982 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (333)
Q Consensus 48 LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (333)
-|-+.+..|++..-+.-.+.+++..+...=.+++..+....+..+.|..+.++|...++|-..++.+
T Consensus 142 kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER 208 (267)
T PF10234_consen 142 KEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELER 208 (267)
T ss_pred chHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777776666666666665555544444566688888888888888998888887777655
No 331
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=58.52 E-value=31 Score=35.72 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019982 99 EALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (333)
Q Consensus 99 ~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 128 (333)
++++..+|+|+.+|.-||.+-|+|.--|-|
T Consensus 245 ~~~~~~i~~lq~EV~~LEeLsrqLFLE~~e 274 (462)
T KOG2417|consen 245 NTLSSDIKLLQQEVEPLEELSRQLFLELVE 274 (462)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999998755443
No 332
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=58.19 E-value=34 Score=37.25 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=34.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 36 ITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 36 Its~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
-|+-++-.-|..||.++.+.++.|.+++-++.+|.++++.++..++
T Consensus 17 ~t~~~~~~~v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~ 62 (732)
T KOG0614|consen 17 GTARELQNLVPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIA 62 (732)
T ss_pred cchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3555666667888888888888888888888888877777666554
No 333
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=58.14 E-value=1e+02 Score=32.47 Aligned_cols=12 Identities=33% Similarity=0.714 Sum_probs=5.3
Q ss_pred HHHhhhHHHHHH
Q 019982 106 RKLQRDVSKLEV 117 (333)
Q Consensus 106 KKL~RDvaKLE~ 117 (333)
-.|.+.|+.||.
T Consensus 269 ~~leqeva~le~ 280 (499)
T COG4372 269 ARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 334
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=58.02 E-value=57 Score=33.19 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 87 AQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 87 a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
-.+|+.||..++..|-.-+-+++|-.++.+.
T Consensus 375 h~eEk~kle~~rr~Leee~~~f~~rk~~~~~ 405 (406)
T KOG3859|consen 375 HQEEKKKLEEKRKQLEEEVNAFQRRKTAAEL 405 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3578899999999999999999998888764
No 335
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=57.97 E-value=47 Score=29.73 Aligned_cols=52 Identities=23% Similarity=0.306 Sum_probs=41.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSK 96 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~k 96 (333)
|-.+|....+-|++|..-|..|+.||+|+++.+.+|..|-....+-+.++.+
T Consensus 3 ve~a~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~e 54 (136)
T PF11570_consen 3 VEVAERNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKE 54 (136)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4456677778899999999999999999999999998665555555555554
No 336
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=57.50 E-value=16 Score=33.10 Aligned_cols=38 Identities=21% Similarity=0.428 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQ 86 (333)
Q Consensus 49 EsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~ 86 (333)
..|+.+|..+|-|....+..++.+|..|-..+.++...
T Consensus 104 D~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~~~~~~ 141 (152)
T PF11500_consen 104 DAEAMRLAEKLKEEQEKVAEMERHVTELASQMASKRNS 141 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45555555555555555555555555555555433333
No 337
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=57.35 E-value=1.7e+02 Score=27.60 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 49 ESEHSALRSQLAEKDSRIAELQSQIES 75 (333)
Q Consensus 49 EsE~~~LR~~laEKd~~i~~Lq~rv~~ 75 (333)
+-|..+||.+|+|=|..+...++..+.
T Consensus 95 dwEevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 95 DWEEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 448899999999988888888887775
No 338
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=57.31 E-value=49 Score=27.14 Aligned_cols=10 Identities=30% Similarity=0.255 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 019982 68 ELQSQIESIY 77 (333)
Q Consensus 68 ~Lq~rv~~le 77 (333)
+|+.+...+|
T Consensus 26 ~Le~qk~E~E 35 (83)
T PF14193_consen 26 ELEAQKTEAE 35 (83)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 339
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=57.14 E-value=1.6e+02 Score=30.02 Aligned_cols=30 Identities=17% Similarity=0.323 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhhHHHHHH-HHHHHHhhcccc
Q 019982 100 ALTNTVRKLQRDVSKLEV-FRKTLVQSLKDD 129 (333)
Q Consensus 100 sLa~TvKKL~RDvaKLE~-FKk~LmqSLqeD 129 (333)
.+...++.|..+|.+||. ++..||-+=..|
T Consensus 79 ~a~~e~~~l~~~~~~~e~~l~~~ll~~~~~D 109 (360)
T TIGR00019 79 MAKEELEELEEKIEELEEQLKVLLLPKDPND 109 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 445677788888888875 555555543333
No 340
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=57.04 E-value=88 Score=34.23 Aligned_cols=77 Identities=27% Similarity=0.327 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--Hhh
Q 019982 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL--VQS 125 (333)
Q Consensus 51 E~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L--mqS 125 (333)
++..+-..|.-||++|+.|-.-|..++.+|+ ..........++..+.++.-..++|+.-..-+--|..|+-| ++.
T Consensus 279 ~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 279 DIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKA 358 (629)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence 3566777888899999999999999999998 44445555555555555555555554433334455566643 454
Q ss_pred cc
Q 019982 126 LK 127 (333)
Q Consensus 126 Lq 127 (333)
+.
T Consensus 359 ie 360 (629)
T KOG0963|consen 359 IE 360 (629)
T ss_pred hh
Confidence 43
No 341
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=57.03 E-value=99 Score=24.64 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (333)
Q Consensus 30 LdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL 80 (333)
|--|.--..-.|..+-...+.....|+..+..-.+..+.|.++|..|...+
T Consensus 8 Ll~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv 58 (70)
T PF04899_consen 8 LLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQV 58 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333333334445555555555555555555555555555555555554444
No 342
>PF13166 AAA_13: AAA domain
Probab=57.03 E-value=2.6e+02 Score=29.66 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=14.0
Q ss_pred HHHHHHhhhhhcCCCChhHHHHHHHhhcccCC
Q 019982 302 KEETLRKTDEVFGPENKDLYTIFEGLITRNVH 333 (333)
Q Consensus 302 REETL~KAeeIFG~~NkdLY~~FegLL~R~~~ 333 (333)
.++.+.+-+.+|+ +..+..|-.++|++-|
T Consensus 657 ~~~~~~~~~~~~~---~~~~~~~~r~~n~~SH 685 (712)
T PF13166_consen 657 DDQILEKLDNKFD---KEEFNSLYRLINDESH 685 (712)
T ss_pred HHHHHHHhhcccc---chHHHHHHHHHhhcCC
Confidence 4444444444433 3345555566655543
No 343
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=57.00 E-value=61 Score=31.97 Aligned_cols=8 Identities=25% Similarity=0.451 Sum_probs=4.0
Q ss_pred HHHHHHHH
Q 019982 115 LEVFRKTL 122 (333)
Q Consensus 115 LE~FKk~L 122 (333)
...|++.|
T Consensus 86 ~~~~~~~~ 93 (378)
T TIGR01554 86 VRAFIKGV 93 (378)
T ss_pred HHHHHHHh
Confidence 34565544
No 344
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=56.93 E-value=49 Score=33.72 Aligned_cols=35 Identities=11% Similarity=0.298 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019982 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (333)
Q Consensus 88 ~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L 122 (333)
.+...+|.+....|...+++|...+..|+..-...
T Consensus 374 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 374 KEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666666666666666666666555443333
No 345
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=56.64 E-value=1.7e+02 Score=32.76 Aligned_cols=47 Identities=32% Similarity=0.389 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 019982 27 FEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIA-ELQSQIESIYSSLS 81 (333)
Q Consensus 27 yEQLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~-~Lq~rv~~le~aL~ 81 (333)
-+||.+|++=-.- + .-++..||..|.-..+... +||+||+.+|..|.
T Consensus 541 ~~QL~~Ar~~lqe------s--~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~ 588 (739)
T PF07111_consen 541 EEQLEAARKSLQE------S--TEEAAELRRELTQQQEVYERALQEKVSEVESRLR 588 (739)
T ss_pred HHHHHHHHhhHHH------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777653221 1 3346677888776555444 78888888777666
No 346
>KOG4074 consensus Leucine zipper nuclear factor [Function unknown]
Probab=56.59 E-value=1e+02 Score=31.35 Aligned_cols=67 Identities=24% Similarity=0.278 Sum_probs=51.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQ-IESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~r-v~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (333)
+.|-.+||.|..-||.+|-=-.....||..= |+++-..||.+.....+|+.+|+.+++.+++..--+
T Consensus 136 Sere~~l~~e~~~l~~ql~iqt~vNsELK~LlVASvgddLQ~~ve~LtedK~qLa~~~~~~~~nl~~~ 203 (383)
T KOG4074|consen 136 SEREAELERELDLLRKQLNIQTKVNSELKRLLVASVGDDLQGQVEALTEDKVQLAHRVDEYMGNLMVE 203 (383)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 5666799999999999998777777777753 456666777777788889999999998887655433
No 347
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=56.52 E-value=57 Score=27.89 Aligned_cols=48 Identities=25% Similarity=0.290 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (333)
Q Consensus 52 ~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~ 103 (333)
...|+.+|.+||..|..++..+.+|..--+ +..-+.+.|+.|-+...+
T Consensus 28 ~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~----QL~kRV~~LQ~El~~~~~ 75 (102)
T PF10205_consen 28 NAELKEQLKEKEQALRKLEQENDSLTFRNQ----QLTKRVEVLQEELEESEQ 75 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhc
Confidence 344555555555555555555555544333 444444444444443333
No 348
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.50 E-value=75 Score=34.78 Aligned_cols=79 Identities=19% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------------DKLGQAQADKERLSKENEALTN 103 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~-----------------~rL~~a~~e~~kL~kE~~sLa~ 103 (333)
|-.||-.||.|...||+.|+++.....-|...++.+-..=+ -|=...+.|-..|-+||=+|..
T Consensus 105 yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQK 184 (772)
T KOG0999|consen 105 YLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQK 184 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Q ss_pred HHHHHhhhHHHHHHHH
Q 019982 104 TVRKLQRDVSKLEVFR 119 (333)
Q Consensus 104 TvKKL~RDvaKLE~FK 119 (333)
+|-.|...---.|.+|
T Consensus 185 qVs~LR~sQVEyEglk 200 (772)
T KOG0999|consen 185 QVSNLRQSQVEYEGLK 200 (772)
T ss_pred HHHHHhhhhhhhhHHH
No 349
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=56.27 E-value=1.5e+02 Score=26.55 Aligned_cols=11 Identities=36% Similarity=0.498 Sum_probs=7.0
Q ss_pred HHHHHHHHHHH
Q 019982 50 SEHSALRSQLA 60 (333)
Q Consensus 50 sE~~~LR~~la 60 (333)
++++.||..+.
T Consensus 58 a~~~eLr~el~ 68 (177)
T PF07798_consen 58 AAIAELRSELQ 68 (177)
T ss_pred HHHHHHHHHHH
Confidence 55666766664
No 350
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=56.21 E-value=62 Score=32.34 Aligned_cols=64 Identities=23% Similarity=0.411 Sum_probs=39.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019982 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-DK---------LGQAQADKERLSKENEALTNTVRKLQRDV 112 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~-~r---------L~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (333)
.+|..||....+|+..-..|. =++.+||++|+ .| .....-||..|.+..++|..+..||..|+
T Consensus 18 qKIqelE~QldkLkKE~qQrQ-------fQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdl 90 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQ-------FQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDL 90 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHH
Confidence 467889999988875444332 24677777777 22 22233345556666666677777777776
Q ss_pred H
Q 019982 113 S 113 (333)
Q Consensus 113 a 113 (333)
.
T Consensus 91 q 91 (307)
T PF10481_consen 91 Q 91 (307)
T ss_pred h
Confidence 4
No 351
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=56.14 E-value=38 Score=29.97 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 47 DLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (333)
Q Consensus 47 ~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le 77 (333)
.|++++..+|..+...+-.+..|+..+..=|
T Consensus 77 ~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kd 107 (131)
T PF04859_consen 77 RLAAEIQEQQSLIKTYEIVVKKLEAELRAKD 107 (131)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333
No 352
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=56.10 E-value=1.5e+02 Score=26.53 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019982 65 RIAELQSQIESIYSSLS 81 (333)
Q Consensus 65 ~i~~Lq~rv~~le~aL~ 81 (333)
..+.++..+++|-..++
T Consensus 52 ~~~~~~a~~~eLr~el~ 68 (177)
T PF07798_consen 52 QEYLFKAAIAELRSELQ 68 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444444
No 353
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=55.99 E-value=39 Score=28.50 Aligned_cols=29 Identities=21% Similarity=0.454 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019982 83 KLGQAQADKERLSKENEALTNTVRKLQRD 111 (333)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~RD 111 (333)
++..+.+++.+|.++...+.+.+|+|.++
T Consensus 88 ~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 88 RLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33366667777777777777777766654
No 354
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=55.91 E-value=82 Score=32.74 Aligned_cols=94 Identities=18% Similarity=0.274 Sum_probs=70.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019982 38 SIAISTRVSDLESEHSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQA---QADKERLSKENEALTNTVRKLQRDVS 113 (333)
Q Consensus 38 s~A~atRVs~LEsE~~~LR~~la-EKd~~i~~Lq~rv~~le~aL~~rL~~a---~~e~~kL~kE~~sLa~TvKKL~RDva 113 (333)
.++=.+|+..+=.++..|...+. +.+..|++|+++...+|.++. +|..= .=+..++.++-..+.+++.-|--|..
T Consensus 117 ~~~TeSRl~tv~~~l~~la~~~~~Dp~~Ri~~Le~e~~~i~~EI~-~l~aG~~~~ld~~~~~er~~~i~~la~~L~~DFr 195 (478)
T PF11855_consen 117 FVGTESRLNTVFDALRQLAEGTDPDPERRIAELEREIAEIDAEID-RLEAGDVPVLDDTQARERARQILQLARELPADFR 195 (478)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678899999999999999887 899999999999999999996 32221 11346677777888899999999998
Q ss_pred HHHHHHHH----HHhhcccccCC
Q 019982 114 KLEVFRKT----LVQSLKDDEDA 132 (333)
Q Consensus 114 KLE~FKk~----LmqSLqeD~~~ 132 (333)
..|.-=|. |-..+.+++..
T Consensus 196 ~V~~~~r~l~r~lr~~i~~~~~~ 218 (478)
T PF11855_consen 196 RVEDNFRELDRALRERIIDWDGS 218 (478)
T ss_pred HHHHHHHHHHHHHHHHHhhcccc
Confidence 87754444 44444555543
No 355
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=55.87 E-value=46 Score=31.86 Aligned_cols=74 Identities=22% Similarity=0.372 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhHHHHHH
Q 019982 56 RSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSK--------ENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 56 R~~laEKd~~i~~Lq~rv~~le~aL~----------~rL~~a~~e~~kL~k--------E~~sLa~TvKKL~RDvaKLE~ 117 (333)
|..|..+|....-++++|...|.-+- .|.....|....|++ |+=+|...++.+..+|+|++-
T Consensus 3 ~~~~~~rd~q~K~i~~~i~~vEkhFg~lC~~~a~ytRKtArLRDk~D~lak~l~~yA~~E~~~l~~~L~~fae~la~vqD 82 (219)
T PF06730_consen 3 RRELRSRDSQTKFIQDRITNVEKHFGELCQLFAAYTRKTARLRDKGDELAKQLQDYANTENPNLKLGLKNFAECLAKVQD 82 (219)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHH
Confidence 33455566666666666665554332 222233333333333 444566789999999999999
Q ss_pred HHHHHHhhcccc
Q 019982 118 FRKTLVQSLKDD 129 (333)
Q Consensus 118 FKk~LmqSLqeD 129 (333)
++...++-|..-
T Consensus 83 YRqa~v~RlE~K 94 (219)
T PF06730_consen 83 YRQAEVERLEAK 94 (219)
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
No 356
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=55.72 E-value=1.5e+02 Score=36.69 Aligned_cols=103 Identities=19% Similarity=0.299 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 32 VARKITSIAISTRVSDLESEHSALRSQLAEKDSRIA-------------ELQSQIESIYSSLSDKLGQAQADKERLSKEN 98 (333)
Q Consensus 32 vArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~-------------~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~ 98 (333)
+..|-.++.-+.||...--||..-|..+.||...+. .||.|+..+|+.|. ..++....|.+|-
T Consensus 939 ~~qk~~~L~~a~~V~~f~~eC~et~~wi~dK~~~~e~t~~~~~Dl~gv~alqrrL~~lErdl~----aie~kv~~L~~ea 1014 (2473)
T KOG0517|consen 939 VDQKKVALESALRVETFHLECEETRVWIRDKTRVLESTDRLGNDLAGVMALQRRLQGLERDLA----AIEAKVAALEKEA 1014 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccCcchHHHHHHHHHHhhhhhHHH----HHHHHHHHHHHHH
Confidence 456777888899999999999999999999988887 78999999998887 4444444444444
Q ss_pred HHHH----HHHHHHhhhHHHHHHHHHHHHhhcccccCCCCCccc
Q 019982 99 EALT----NTVRKLQRDVSKLEVFRKTLVQSLKDDEDASTGATR 138 (333)
Q Consensus 99 ~sLa----~TvKKL~RDvaKLE~FKk~LmqSLqeD~~~~~~~~~ 138 (333)
+.+. .....++..++.|+..=..|-+.+++-+...+++.+
T Consensus 1015 ~~v~~~~Paea~~i~~r~~el~~~w~~l~~~~~~~~~~l~ea~~ 1058 (2473)
T KOG0517|consen 1015 NKVEEEHPAEAQAINARIAELQALWEQLQQRLQEREERLEEAGG 1058 (2473)
T ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 356678888888888888888888887765544443
No 357
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.68 E-value=91 Score=31.25 Aligned_cols=64 Identities=25% Similarity=0.433 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 47 ~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
+||++...|-.+..+=+..+..|++.+.++-..+. .-+.+|..+-+.|.+|.--|.|++.|||.
T Consensus 119 k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~-------~qq~Els~~L~~l~~~~~~~s~~~~k~es 182 (300)
T KOG2629|consen 119 KLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLA-------TQQSELSRALASLKNTLVQLSRNIEKLES 182 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45655555555554444445555544444433222 12236666666666666667777777664
No 358
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=55.46 E-value=1.1e+02 Score=36.04 Aligned_cols=46 Identities=17% Similarity=0.290 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~~ 131 (333)
+..++...|.++..+|.++.+.++.++.|++-.||..+..+++-+.
T Consensus 620 ~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek 665 (1317)
T KOG0612|consen 620 EISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEK 665 (1317)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445557788888999999999999999999999999888876655
No 359
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=55.02 E-value=1.2e+02 Score=25.15 Aligned_cols=39 Identities=28% Similarity=0.304 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019982 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (333)
Q Consensus 89 ~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 127 (333)
+-..-|.+..+.|...+++|+.++++|..--.++++-|+
T Consensus 86 eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 86 EAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334556677788888889999999888877777776554
No 360
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=54.98 E-value=33 Score=37.23 Aligned_cols=45 Identities=29% Similarity=0.516 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCC
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDEDAS 133 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~~~~ 133 (333)
....|+++|.+||+.+-++++.+...|+-| =+.+.|-|.+++...
T Consensus 522 ~l~~eKeqLl~Er~~~d~~L~~~kqqls~L---~~~Vf~~lrd~eg~~ 566 (604)
T KOG3863|consen 522 KLQKEKEQLLRERDELDSTLGVMKQQLSEL---YQEVFQQLRDEEGNP 566 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccccCc
Confidence 666889999999999999998888776654 455556677887553
No 361
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=54.88 E-value=1.2e+02 Score=26.37 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=45.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSR--IAELQSQIESIYSSLSDKLGQAQADK-ERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~--i~~Lq~rv~~le~aL~~rL~~a~~e~-~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
-.=|-.|=.|..++.+..++.+.. ..++...+..|...|. .+.... .++..+++.....+..+.+-+|-||
T Consensus 66 P~tvLALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le----~ae~~~~~~~~~~~~~~e~~~~~~~~riaEle 139 (139)
T PF13935_consen 66 PATVLALLDELERAQQRIAELEQECENEDIALDVQKLRVELE----AAEKRIAAELAEQAEAYEGEIADYAKRIAELE 139 (139)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC
Confidence 344556666666666666666655 6777777777776665 333333 5666777777777777776666654
No 362
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=54.81 E-value=12 Score=36.27 Aligned_cols=24 Identities=42% Similarity=0.488 Sum_probs=19.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHH
Q 019982 37 TSIAISTRVSDLESEHSALRSQLA 60 (333)
Q Consensus 37 ts~A~atRVs~LEsE~~~LR~~la 60 (333)
..-|-..|++.||.|..+||+|+|
T Consensus 116 ~~~~AlqKIsALEdELs~LRaQIA 139 (253)
T PF05308_consen 116 ANEAALQKISALEDELSRLRAQIA 139 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788999999999999986
No 363
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=54.68 E-value=1.3e+02 Score=35.02 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=41.4
Q ss_pred ChhhhHHHHHHHHHHHH-----------HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 25 DPFEQLDVARKITSIAI-----------STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 25 DPyEQLdvArkIts~A~-----------atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
|=..||++.-+=.++.. -..+-.++.|+..+.+++-|+++.+..-+++|+.+|....
T Consensus 712 ~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~ 779 (1174)
T KOG0933|consen 712 DLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMK 779 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567766655444443 3456778888888888988888888888888888877666
No 364
>PRK04325 hypothetical protein; Provisional
Probab=54.59 E-value=86 Score=24.84 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccc
Q 019982 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (333)
Q Consensus 66 i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~ 130 (333)
...+++|+..||..+. .-++-.+ .|...|-+.++++++|+.=-+.|...|.+-+
T Consensus 4 ~~~~e~Ri~~LE~klA----fQE~tIe-------~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 4 VQEMEDRITELEIQLA----FQEDLID-------GLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred chhHHHHHHHHHHHHH----HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567888888885443 4444333 4555666677777777766666666665544
No 365
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=54.57 E-value=40 Score=35.07 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=24.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
|-.||.|+.-+.+.-.-.. .+..|+...+.++..+.
T Consensus 324 i~ELe~Ei~~~~~~~~~~~-~l~~L~~~~~~~~~~~~ 359 (448)
T PF05761_consen 324 IPELEQEIEIWNSKKYRFE-ELQELEELLEELQDHLD 359 (448)
T ss_dssp -TTHHHHHHHHHHTHHHHH-HHHHHHHHCHHHHCHHH
T ss_pred ehhhhhhhhhhhhcchhhh-HHHHHHHHHHHHHHHhc
Confidence 5689999988876654333 37778877777776664
No 366
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=54.46 E-value=1e+02 Score=23.98 Aligned_cols=69 Identities=22% Similarity=0.352 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKL-GQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 48 LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL-~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
.+.+++..++.+.+....+..|+..+..+...+.... .....+......-...|...++.+...|..++
T Consensus 3 a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 72 (123)
T PF02050_consen 3 AEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLE 72 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666667777777777777776666655444111 12224444444455555555555555554443
No 367
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=54.27 E-value=1.9e+02 Score=31.45 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQI 73 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv 73 (333)
+.=|+.++..|+++|.+-+..+.+.+.+.
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34466666777777777777666666654
No 368
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=54.23 E-value=1.3e+02 Score=28.11 Aligned_cols=81 Identities=10% Similarity=0.185 Sum_probs=54.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019982 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (333)
Q Consensus 44 RVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk 120 (333)
+|..+|.++..|+.++..=-..+..+- ....++. ..+...+.|-.+....-+..+.+++|...-+..|+.++.
T Consensus 3 ~i~~~E~d~~~Le~~l~Kl~K~~~~~~----dag~~~~~a~~~F~~~l~d~~~~~~~De~i~~~l~kF~~~l~ei~~~~~ 78 (200)
T cd07638 3 ALEDVEGDVAELELKLDKLVKLCIGMI----DAGKAFCQANKQFMNGIRDLAQYSSKDAVIETSLTKFSDTLQEMINYHT 78 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 567888888888887754333333222 2222222 344566667766666777888999999999999999998
Q ss_pred HHHhhccc
Q 019982 121 TLVQSLKD 128 (333)
Q Consensus 121 ~LmqSLqe 128 (333)
.|+.-.++
T Consensus 79 ~L~~q~~~ 86 (200)
T cd07638 79 ILFDQAQR 86 (200)
T ss_pred HHHHHHHH
Confidence 88765544
No 369
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=54.11 E-value=77 Score=36.49 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 127 (333)
.++|-+++|++-|. .+++.|...+++|..-+|-|-+-..
T Consensus 476 alee~~EQL~Esn~---ele~DLreEld~~~g~~kel~~r~~ 514 (1243)
T KOG0971|consen 476 ALEEMNEQLQESNR---ELELDLREELDMAKGARKELQKRVE 514 (1243)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444444444443 2456666666777555555544433
No 370
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=54.00 E-value=1.5e+02 Score=26.55 Aligned_cols=71 Identities=23% Similarity=0.325 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhHHHHHH
Q 019982 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALT--------NTVRKLQRDVSKLEV 117 (333)
Q Consensus 48 LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~--~rL~~a~~e~~kL~kE~~sLa--------~TvKKL~RDvaKLE~ 117 (333)
=..++..||.+|..==..|..-++|++ ||..+. +.|.....|.+.-.+|=+++- +.+||+-+.| |+
T Consensus 50 ~~~d~~~lr~~L~~YLD~IKm~RAkY~-lENky~L~~tL~~LtkEVn~Wr~ewd~iE~~mFGD~pnSmkkMl~nv---es 125 (132)
T PF09432_consen 50 PSTDTEELRAQLDRYLDDIKMERAKYS-LENKYSLQDTLNQLTKEVNYWRKEWDNIEMLMFGDGPNSMKKMLQNV---ES 125 (132)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH---HH
Confidence 345788999999988888888888876 666655 999999999999999999985 5678886655 55
Q ss_pred HHHHH
Q 019982 118 FRKTL 122 (333)
Q Consensus 118 FKk~L 122 (333)
.|..|
T Consensus 126 lk~~l 130 (132)
T PF09432_consen 126 LKSKL 130 (132)
T ss_pred HHHHh
Confidence 55554
No 371
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=54.00 E-value=1.9e+02 Score=31.38 Aligned_cols=85 Identities=21% Similarity=0.304 Sum_probs=40.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----HHHH
Q 019982 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS---LSDKLGQAQADKERLSKENEALTNTVRKLQRD-----VSKL 115 (333)
Q Consensus 44 RVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~a---L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RD-----vaKL 115 (333)
++..++.|+.++-+++ +....+++....+++.. ++.||...+.+.+.+.+...+|...+..|.|+ |+.-
T Consensus 347 ~~~~~~~~l~~~~~~~---~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~laEa 423 (656)
T PRK06975 347 KVDRLDQELVQRQQAN---DAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWMIAEV 423 (656)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHH
Confidence 5666666655544433 22222222222222222 22555566666666666666666666655543 3444
Q ss_pred HHHHHHHHhhcccccC
Q 019982 116 EVFRKTLVQSLKDDED 131 (333)
Q Consensus 116 E~FKk~LmqSLqeD~~ 131 (333)
|-+=+.=-|-|+-+.+
T Consensus 424 e~Ll~lA~q~L~l~~d 439 (656)
T PRK06975 424 EQMLSSASQQLQLTGN 439 (656)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 4444444444544443
No 372
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=53.93 E-value=55 Score=33.21 Aligned_cols=59 Identities=20% Similarity=0.359 Sum_probs=47.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE 99 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~ 99 (333)
|++|-..|-.+...|-++..+-.....+|++++.++..-.. .-|....+|.+++.+|-.
T Consensus 264 I~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemE 325 (384)
T KOG0972|consen 264 IASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEME 325 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888888888888888888776665 667788888888877654
No 373
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=53.87 E-value=1.2e+02 Score=29.85 Aligned_cols=69 Identities=26% Similarity=0.346 Sum_probs=45.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKE----RLSKENEALTNTVRKLQ 109 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~----kL~kE~~sLa~TvKKL~ 109 (333)
+|..|...|+.|..++-.++..-+.....|+.....+...+. |...+.+..+ -|+++|..|..-.+++.
T Consensus 26 ~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~-k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~ 98 (309)
T PF09728_consen 26 ALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELS-KAILAKSKLESLCRELQKQNKKLKEESKRRA 98 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888888888877777775 3333333333 34555555555444443
No 374
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=53.84 E-value=1.5e+02 Score=25.91 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=30.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADK-ERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~-~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
.....+|+.++..|+.........+..+...+..|+.... +|. ++. ..+.+|-+-|-.-+--|..-+.|+
T Consensus 33 ~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-kl~---~E~~~~~q~EldDLL~ll~Dle~K~~ky 103 (136)
T PF04871_consen 33 EQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKE-KLK---EEARKEAQSELDDLLVLLGDLEEKRKKY 103 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHhhhhhHHHHHHHHHhHHHHHHHH
Confidence 3344444555445554444333344445545444443222 221 122 345555555555554444444444
No 375
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=53.67 E-value=1.2e+02 Score=32.91 Aligned_cols=89 Identities=15% Similarity=0.200 Sum_probs=61.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHH
Q 019982 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------------------------DKLGQAQADKER 93 (333)
Q Consensus 38 s~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~------------------------~rL~~a~~e~~k 93 (333)
-..||.|+.-+|-|++.|.....-+.+.|+.|+++-..|+.... .||.....|+=-
T Consensus 592 ekG~Aeki~~me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakKAVhdaK~ElA~~Y~klLagiKEKwv 671 (790)
T PF07794_consen 592 EKGYAEKIGFMEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKKAVHDAKVELAAAYSKLLAGIKEKWV 671 (790)
T ss_pred hhhhHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999999999999999999999888777665432 344444444433
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019982 94 LSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (333)
Q Consensus 94 L~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 126 (333)
-.||--.|-.+.-.+.-+++=|.-.-|.-+++-
T Consensus 672 ~KKe~t~le~qAaEvesNlaLidqi~kaaIdlt 704 (790)
T PF07794_consen 672 AKKEYTVLEGQAAEVESNLALIDQITKAAIDLT 704 (790)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666666554
No 376
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=53.57 E-value=2.8e+02 Score=28.79 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=17.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 019982 43 TRVSDLESEHSALRSQLAEKDSRIAELQ 70 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~laEKd~~i~~Lq 70 (333)
-++..+-+++..+|.+..+-...+..|+
T Consensus 80 ~~~q~~~~q~~~~~~~~~~v~~ek~rl~ 107 (377)
T KOG2896|consen 80 HVEQCLSAQVQSMRVEMKEVSEEKLRLQ 107 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666677777776666665555
No 377
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=53.53 E-value=74 Score=34.04 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019982 63 DSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (333)
Q Consensus 63 d~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RD 111 (333)
...+.++++||..++..=. .-+.++.++-.+|.+|-.+.-+.++.|.+|
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~ 241 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKND 241 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777776665311 344455555555555544444444443333
No 378
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=53.31 E-value=2.5e+02 Score=29.48 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=35.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 019982 37 TSIAISTRVSDLESEHSALRSQLAEK-------DSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 37 ts~A~atRVs~LEsE~~~LR~~laEK-------d~~i~~Lq~rv~~le~aL~ 81 (333)
++.++.+-|++||.|...++.+|+.- +-.|..|+.||..||.++.
T Consensus 280 ~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa 331 (434)
T PRK15178 280 TITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIG 331 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHH
Confidence 34566777888888888888877744 4468889999999998776
No 379
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=53.14 E-value=91 Score=31.10 Aligned_cols=80 Identities=18% Similarity=0.275 Sum_probs=41.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H----H-------HHHHHHHHHHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI----------Y----S-------SLSDKLGQAQADKERLSKENE 99 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~l----------e----~-------aL~~rL~~a~~e~~kL~kE~~ 99 (333)
+..-..+++..+..+...+.|-+..|.+|+..+..+ + . ....+|..+.++ |..+-.
T Consensus 72 l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~---L~~~~~ 148 (301)
T PF06120_consen 72 LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRE---LAVAQE 148 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 444455555555555555555555555555555321 0 0 111455555555 334444
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Q 019982 100 ALTNTVRKLQRDVSKLEVFRKTLV 123 (333)
Q Consensus 100 sLa~TvKKL~RDvaKLE~FKk~Lm 123 (333)
.|.+++-|++.--+.|.......+
T Consensus 149 ~l~q~~~k~~~~q~~l~~~~~~~~ 172 (301)
T PF06120_consen 149 RLEQMQSKASETQATLNDLTEQRI 172 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566655566666666555
No 380
>PF09302 XLF: XLF (XRCC4-like factor); InterPro: IPR015381 XLF (also called Cernunnos) interacts with the XRCC4-DNA ligase IV complex to promote DNA non-homologous end-joining. It directly interacts with the XRCC4-Ligase IV complex and siRNA-mediated downregulation of XLF in human cell lines leads to radio-sensitivity and impaired DNA non-homologous end-joining []. XLF is homologous to the yeast non-homologous end-joining factor Nej1 []. ; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z56_A 3RWR_D 3Q4F_A 3SR2_H 2R9A_A 2QM4_C.
Probab=53.06 E-value=18 Score=31.73 Aligned_cols=43 Identities=26% Similarity=0.386 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 31 DVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (333)
Q Consensus 31 dvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~ 74 (333)
.+++.+..- +...+..|+.++..|...|.+||..|..|.++++
T Consensus 128 ~~~~~L~~P-ll~~~~~l~~~~~~L~~~l~~KD~~i~~l~~~~~ 170 (171)
T PF09302_consen 128 QFLSHLNSP-LLRMSSALQRQVESLKDLLKEKDKEIEKLRDKLE 170 (171)
T ss_dssp HHHHHTHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 555555544 3455677888899999999999999999998764
No 381
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=53.04 E-value=52 Score=35.60 Aligned_cols=10 Identities=30% Similarity=0.551 Sum_probs=6.7
Q ss_pred HHHHHHHHHH
Q 019982 283 EQFAIFLANV 292 (333)
Q Consensus 283 EQFsaFLANI 292 (333)
-+|=+|||+|
T Consensus 704 ~siP~FLaal 713 (722)
T PF05557_consen 704 NSIPAFLAAL 713 (722)
T ss_dssp --HHHHHHHH
T ss_pred CChhHHHHHH
Confidence 5788899886
No 382
>PF05859 Mis12: Mis12 protein; InterPro: IPR008685 Kinetochores are the chromosomal sites for spindle interaction and play a vital role for chromosome segregation. Fission Saccharomyces cerevisiae kinetochore protein Mis12, is required for correct spindle morphogenesis, determining metaphase spindle length []. Thirty-five to sixty percent extension of metaphase spindle length takes place in Mis12 mutants []. It has been shown that Mis12 might genetically interact with Mal2p [].; GO: 0007049 cell cycle, 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=53.00 E-value=11 Score=32.85 Aligned_cols=55 Identities=29% Similarity=0.394 Sum_probs=39.9
Q ss_pred CCCChHHHH--hcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 019982 11 TFDLPEEVL--QVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQ 70 (333)
Q Consensus 11 ~f~Lp~eil--aVLPsDPyEQLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq 70 (333)
=|.+|.++| .|+.-.+|+=+++.. .-...-..|+.|+..||.+|.+.-.+-+.|+
T Consensus 86 if~IP~~llp~~~~~l~~~~~~~~~~-----~~~~~~~~ld~el~~lr~kL~~~~~~~~~L~ 142 (144)
T PF05859_consen 86 IFSIPEDLLPEDWIRLYHHEGLDFSS-----NQLEEDYELDAELEQLRRKLEEQRKLNAELE 142 (144)
T ss_pred cccCChhhcchhhhcccccccccccc-----ccccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 478896665 366677777777664 4445567888999999999888777766665
No 383
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=52.89 E-value=96 Score=26.45 Aligned_cols=46 Identities=24% Similarity=0.375 Sum_probs=27.4
Q ss_pred HHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 30 LDVARKITSI-AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIES 75 (333)
Q Consensus 30 LdvArkIts~-A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~ 75 (333)
.|+.+=+..+ ++..-...|+.+...++.++..+...+..+++++..
T Consensus 22 Vd~~~v~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~ 68 (158)
T PF03938_consen 22 VDVDKVFQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQS 68 (158)
T ss_dssp E-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eeHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554 445555677777777777777666666666655544
No 384
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=52.86 E-value=90 Score=27.12 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=15.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQ 72 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~r 72 (333)
.+..|+...+.++..++..|.+=...+.+|+.+
T Consensus 34 dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~ 66 (141)
T PF13874_consen 34 DLKKRVEAQEEEIAQHRERLKEINDKLEELQKH 66 (141)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888888888888888766667777443
No 385
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=52.84 E-value=12 Score=37.55 Aligned_cols=87 Identities=32% Similarity=0.383 Sum_probs=24.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~----------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RD 111 (333)
.++|+.|++++..|-..+++-...+.+|...|..++..|. ..+.........|+..-+.|.-.|-.|.+|
T Consensus 55 ss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksd 134 (326)
T PF04582_consen 55 SSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSD 134 (326)
T ss_dssp ---------------------------------------------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhh
Confidence 3445555555554444444444444444444444444443 444445555678888888999999999999
Q ss_pred HHHHHHHHHHHHhhccc
Q 019982 112 VSKLEVFRKTLVQSLKD 128 (333)
Q Consensus 112 vaKLE~FKk~LmqSLqe 128 (333)
|+-+.-==.-|=+.++.
T Consensus 135 VSt~aL~ItdLe~RV~~ 151 (326)
T PF04582_consen 135 VSTQALNITDLESRVKA 151 (326)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhcchHhhHHHHHHH
Confidence 98765444444444444
No 386
>KOG2218 consensus ER to golgi transport protein/RAD50-interacting protein 1 [Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=52.82 E-value=34 Score=37.92 Aligned_cols=91 Identities=32% Similarity=0.294 Sum_probs=57.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHH---HHHHHHH---HHHHHHHH-----HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLA---EKDSRIA---ELQSQIES-----IYSSLSDKLGQA-QADKERLSKENEALTNTVRK 107 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~la---EKd~~i~---~Lq~rv~~-----le~aL~~rL~~a-~~e~~kL~kE~~sLa~TvKK 107 (333)
+...+|+.+|.|+..|-++|+ ++|.... -.-+..++ ..++| ++|.+. ..-..+++.|...+..++-.
T Consensus 29 r~~~~~s~l~~~~seL~q~l~~L~~~~~~n~~~~~s~~~~~q~~~~ev~~~l-e~L~~l~~~~~~~~~~~e~v~~~~~e~ 107 (737)
T KOG2218|consen 29 RASDLVSELEKELSELNQRLQNLKERDPSNLTTYLSAEQGAQQDIEEVGAEL-EKLQRLERALYGDLQLEEQVLKVAKEI 107 (737)
T ss_pred ccccchhhHHHHHHHHHHHHhhhcccCcccchhHhhHHHHhhhhHHHHhhhH-HHHHHHHHHhhHHHHHHHHHhhccchh
Confidence 345689999999999988543 4432211 11111111 22222 233333 33345667777777777777
Q ss_pred H--hhhHHHHHHHHHHHHhhcccccC
Q 019982 108 L--QRDVSKLEVFRKTLVQSLKDDED 131 (333)
Q Consensus 108 L--~RDvaKLE~FKk~LmqSLqeD~~ 131 (333)
+ .-.|.|||+||+.|-+.+.-|..
T Consensus 108 ~~~~~~V~~le~~k~yl~~~~~l~t~ 133 (737)
T KOG2218|consen 108 LQMRDEVLKLEVFKQYLGTLLELDTL 133 (737)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccchh
Confidence 7 77899999999999999987764
No 387
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=52.77 E-value=1.2e+02 Score=25.95 Aligned_cols=12 Identities=8% Similarity=0.299 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 019982 66 IAELQSQIESIY 77 (333)
Q Consensus 66 i~~Lq~rv~~le 77 (333)
+..++..+..+.
T Consensus 52 l~~~~~el~~~~ 63 (158)
T PF03938_consen 52 LQAKQKELQKLQ 63 (158)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 388
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=52.75 E-value=96 Score=23.20 Aligned_cols=31 Identities=26% Similarity=0.520 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
...+....|..||+.|...+..|...+..|+
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 30 ELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555553
No 389
>PRK09737 EcoKI restriction-modification system protein HsdS; Provisional
Probab=52.71 E-value=30 Score=33.88 Aligned_cols=41 Identities=10% Similarity=0.312 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHH---HHHHHH-HhhhHHHHHHHHHHHHhhccc
Q 019982 88 QADKERLSKENEAL---TNTVRK-LQRDVSKLEVFRKTLVQSLKD 128 (333)
Q Consensus 88 ~~e~~kL~kE~~sL---a~TvKK-L~RDvaKLE~FKk~LmqSLqe 128 (333)
++||.+.++.-+.| ...+.+ +++-+++|+.+|+.|||.+=-
T Consensus 372 l~EQ~kI~~~l~~l~~~~d~i~~~~~~~l~~L~~lKqslLqk~ft 416 (461)
T PRK09737 372 LEEQAEIVRRVEQLFAYADTIEKQVNNALARVNNLTQSILAKAFR 416 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 57777777655554 444444 577899999999999998643
No 390
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=52.65 E-value=12 Score=33.95 Aligned_cols=70 Identities=19% Similarity=0.209 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (333)
Q Consensus 35 kIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (333)
.=+-+++...+..|+++-.+|+.++.-=-....-|+.+++.....|+ .+.++.++|-.|++-|-..+-++
T Consensus 7 aq~~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq----~se~~~~~Lpee~~~Lqfl~~~~ 76 (181)
T PF09311_consen 7 AQVMRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQ----ESEQEVAQLPEEVKHLQFLVSIK 76 (181)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHT---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhhhcCcchHHHHHHHHHhc
Confidence 33445666666666666666666554434444444444443333332 44555555555555544444333
No 391
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=52.64 E-value=4.3e+02 Score=30.71 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019982 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (333)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 128 (333)
..+..+..+..++.++++....+++++.+.+.+|+.=-..|..-|.-
T Consensus 490 ~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p 536 (1201)
T PF12128_consen 490 QAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDP 536 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 33445555666677777777777777777777766655555555543
No 392
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=52.34 E-value=1.4e+02 Score=28.24 Aligned_cols=66 Identities=30% Similarity=0.400 Sum_probs=32.6
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH---HHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019982 51 EHSALRSQLAE-------KDSRIAELQSQIESIYSSLS---DKL-------GQAQADKERLSKENEALTNTVRKLQRDVS 113 (333)
Q Consensus 51 E~~~LR~~laE-------Kd~~i~~Lq~rv~~le~aL~---~rL-------~~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (333)
||+-|+++|-| |+..|-.|+..+-.+-..+. .++ ..-.-+.+...+|-...-+-+.-|...|.
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~ 90 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLG 90 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh
Confidence 45555555433 66666666666655555554 111 11122334444454444444544555555
Q ss_pred HHH
Q 019982 114 KLE 116 (333)
Q Consensus 114 KLE 116 (333)
+||
T Consensus 91 ~le 93 (202)
T PF06818_consen 91 QLE 93 (202)
T ss_pred hhH
Confidence 555
No 393
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=52.21 E-value=1.3e+02 Score=34.80 Aligned_cols=74 Identities=18% Similarity=0.279 Sum_probs=48.3
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FK 119 (333)
--++...|.++..|+..+..+...+.+|++++......|. .......-|-+|+..|-..+++.++-.+|+|+.+
T Consensus 628 ~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le----~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~~ 701 (1072)
T KOG0979|consen 628 EELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELE----EEQKKLKLLKRERTKLNSELKSYQQRKERIENLV 701 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3455667778888888888888888888888777666554 3333334445556666666666666666666653
No 394
>PRK00846 hypothetical protein; Provisional
Probab=52.19 E-value=87 Score=25.43 Aligned_cols=6 Identities=33% Similarity=0.379 Sum_probs=2.8
Q ss_pred HHHHHH
Q 019982 114 KLEVFR 119 (333)
Q Consensus 114 KLE~FK 119 (333)
||+...
T Consensus 56 rL~~~~ 61 (77)
T PRK00846 56 DLGKVR 61 (77)
T ss_pred HHHHhc
Confidence 454444
No 395
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=52.17 E-value=53 Score=30.79 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=5.9
Q ss_pred hhhhhHHHHHHHHHH
Q 019982 44 RVSDLESEHSALRSQ 58 (333)
Q Consensus 44 RVs~LEsE~~~LR~~ 58 (333)
|+..|+.+..+|++.
T Consensus 140 rl~~l~~~~~rl~~l 154 (262)
T PF14257_consen 140 RLKNLEAEEERLLEL 154 (262)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334443433333
No 396
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=51.90 E-value=1.5e+02 Score=25.31 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=22.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~l 76 (333)
..+..|++|+.+++..+.+-...+..+++-+...
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q 36 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQ 36 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777776666666665555433
No 397
>PRK00295 hypothetical protein; Provisional
Probab=51.82 E-value=73 Score=24.84 Aligned_cols=41 Identities=15% Similarity=0.090 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019982 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (333)
Q Consensus 66 i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (333)
|.+|+.|++-.|..+. ...+...+.+++.+.|...++.|.+
T Consensus 7 i~~LE~kla~qE~tie----~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 7 VTELESRQAFQDDTIQ----ALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666655554443 3444444555555666666666644
No 398
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=51.79 E-value=1.3e+02 Score=28.44 Aligned_cols=80 Identities=19% Similarity=0.345 Sum_probs=49.3
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhH
Q 019982 43 TRVSDLESEHSALRSQLAEKDSRIAELQ------SQIESIYSSLSDKLGQAQADKERL----SKENEALTNTVRKLQRDV 112 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~laEKd~~i~~Lq------~rv~~le~aL~~rL~~a~~e~~kL----~kE~~sLa~TvKKL~RDv 112 (333)
+.|+.+|.++..|...+.. +|.+.+ +.++..+.++ ...+.|-.+. -.+-.-..++++|...-+
T Consensus 2 ~~l~~~E~d~~~L~~~~~k---L~K~c~~~~~a~~~~~~A~~~F----~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l 74 (215)
T cd07601 2 SLLNVFEEDALQLSSYMNQ---LLQACKRVYDAQNELKSATQAL----SKKLGEYEKQKFELGRDDEILVSTLKQFSKVV 74 (215)
T ss_pred chHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhccCCCCCcHHHHHHHHHHHHHH
Confidence 4577788888888877642 333333 2333333333 3555555433 333334446888888888
Q ss_pred HHHHHHHHHHHhhcccc
Q 019982 113 SKLEVFRKTLVQSLKDD 129 (333)
Q Consensus 113 aKLE~FKk~LmqSLqeD 129 (333)
.-|++++..|+..+++-
T Consensus 75 ~El~~~~~~L~~q~~~~ 91 (215)
T cd07601 75 DELSTMHSTLSSQLADT 91 (215)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88999998888877654
No 399
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=51.78 E-value=2e+02 Score=26.64 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHH
Q 019982 90 DKERLSKENEALTNTVRKLQRDVSK 114 (333)
Q Consensus 90 e~~kL~kE~~sLa~TvKKL~RDvaK 114 (333)
++.+|-.+...|...+-.|.|..++
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~ 149 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAK 149 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555554333
No 400
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=51.71 E-value=3.9e+02 Score=29.97 Aligned_cols=84 Identities=19% Similarity=0.239 Sum_probs=61.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI---YS---SLS-DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~l---e~---aL~-~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (333)
+|-++...--.|++.||.+++||+..+.-|++++..- |. .++ .+|+.|+|..+.-.++++....-.+.+-...
T Consensus 228 qye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e~~~~rd~~lk~a~eslm~ane~kdr~ie~lr~~ln~y 307 (861)
T KOG1899|consen 228 QYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGEHKSLRDNTLKNALESLMRANEQKDRFIESLRNYLNNY 307 (861)
T ss_pred HHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhhh
Confidence 4444444555679999999999999999999887642 22 233 7888999998888888888888777776666
Q ss_pred HHHHHHHHHHH
Q 019982 113 SKLEVFRKTLV 123 (333)
Q Consensus 113 aKLE~FKk~Lm 123 (333)
.|..-..+-+|
T Consensus 308 ~k~~~iv~i~q 318 (861)
T KOG1899|consen 308 DKNAQIVRILQ 318 (861)
T ss_pred hhhhhhhhhhc
Confidence 66655555444
No 401
>PHA03185 UL14 tegument protein; Provisional
Probab=51.70 E-value=92 Score=29.77 Aligned_cols=59 Identities=17% Similarity=0.288 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQA 89 (333)
Q Consensus 28 EQLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~ 89 (333)
.-+||.++|-|++ ||...|.-++.++..+.|-...-..|...--=|.-.|+.+|-.++|
T Consensus 53 A~~dl~aqLrS~a---Rve~VeQKar~Iq~rVEeQ~a~r~iL~~hRRyL~pdf~e~lD~~ED 111 (214)
T PHA03185 53 AHRELEARLKSRA---RLEMLRQHAACVKIRVEEQAERRDFLIAHRRYLDPALGERLDEAED 111 (214)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 5689999999988 9999999999888888776666555554444444444444444433
No 402
>PRK00736 hypothetical protein; Provisional
Probab=51.63 E-value=62 Score=25.23 Aligned_cols=12 Identities=0% Similarity=0.141 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 019982 69 LQSQIESIYSSL 80 (333)
Q Consensus 69 Lq~rv~~le~aL 80 (333)
+++|+..||..+
T Consensus 3 ~e~Ri~~LE~kl 14 (68)
T PRK00736 3 AEERLTELEIRV 14 (68)
T ss_pred HHHHHHHHHHHH
Confidence 345555555433
No 403
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=51.60 E-value=2.1e+02 Score=26.81 Aligned_cols=74 Identities=19% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLA-EKDSRIAELQSQIESIYSSLS-DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~la-EKd~~i~~Lq~rv~~le~aL~-~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
.+..+|..|...+..|-..+. ||+.....++.....|...|. -.-..-.+.+....+| ...+|||.-++.+|..
T Consensus 89 ~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE----~~i~krl~e~~~~l~~ 164 (247)
T PF06705_consen 89 QLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREERE----ENILKRLEEEENRLQE 164 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
No 404
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=51.60 E-value=2.6e+02 Score=28.19 Aligned_cols=84 Identities=15% Similarity=0.266 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 29 QLDVARKITSIAISTRVSDLESEHSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (333)
Q Consensus 29 QLdvArkIts~A~atRVs~LEsE~~~LR~~la-EKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKK 107 (333)
=.+....+..+|-.-|.. ...||..+. =-...+.+|+.+...-+.+|..|+....+-+.+|..+.......+..
T Consensus 202 W~~~s~~ni~~a~~e~~~-----S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~ 276 (384)
T PF03148_consen 202 WEEFSNENIQRAEKERQS-----SAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAE 276 (384)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344455666666555554 466777776 45566778888888888888877777777777777777666666666
Q ss_pred HhhhHHHHHH
Q 019982 108 LQRDVSKLEV 117 (333)
Q Consensus 108 L~RDvaKLE~ 117 (333)
+.+++..||.
T Consensus 277 ~e~~i~~L~~ 286 (384)
T PF03148_consen 277 MEKNIEDLEK 286 (384)
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 405
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=51.57 E-value=1.7e+02 Score=25.62 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=42.2
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 26 PFEQLDVARKITSIAISTRVSDLESEHSALRSQ-LAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (333)
Q Consensus 26 PyEQLdvArkIts~A~atRVs~LEsE~~~LR~~-laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~T 104 (333)
|-++++=..+-.+-.|..+....|.-|..|=-- ..|.+ -.+++..|+..+. .+.++..+..+|++.|-..
T Consensus 63 ~~~~~~~~~~elA~dIi~kakqIe~LIdsLPg~~~see~-----Q~~~i~~L~~E~~----~~~~el~~~v~e~e~ll~~ 133 (144)
T PF11221_consen 63 PPEEFEENIKELATDIIRKAKQIEYLIDSLPGIEVSEEE-----QLKRIKELEEENE----EAEEELQEAVKEAEELLKQ 133 (144)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHH-----HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH-----HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 455555555555666666666666666665431 11111 1124444443333 5555556666667777777
Q ss_pred HHHHhhhHH
Q 019982 105 VRKLQRDVS 113 (333)
Q Consensus 105 vKKL~RDva 113 (333)
|..+-++|+
T Consensus 134 v~~~i~~ia 142 (144)
T PF11221_consen 134 VQELIREIA 142 (144)
T ss_dssp HHHHHHTT-
T ss_pred HHHHHHHHh
Confidence 777776665
No 406
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=51.30 E-value=2.3e+02 Score=27.11 Aligned_cols=63 Identities=21% Similarity=0.382 Sum_probs=39.0
Q ss_pred HhcCCCChhhhH----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 19 LQVLPSDPFEQL----DVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 19 laVLPsDPyEQL----dvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
++|+=+-|.+|. |+-++|..+....--.........+++++.+-+..+..|+.++..++..+.
T Consensus 93 iaivIs~pl~l~iF~~eI~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~ 159 (301)
T PF14362_consen 93 IAIVISEPLELKIFEKEIDQKLDEIRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEID 159 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566654 555666655444444444444445677777777778888888888777776
No 407
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=51.08 E-value=2.4e+02 Score=28.50 Aligned_cols=78 Identities=23% Similarity=0.342 Sum_probs=41.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHH
Q 019982 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE-ALTNTVRKLQRDVSK 114 (333)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~-sLa~TvKKL~RDvaK 114 (333)
.++--|++.|++|---||++|.+--....--++-|..++..++ .+|..--+.+.-|.+||+ -|.+-..-|.--+-+
T Consensus 217 es~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~q 296 (305)
T PF14915_consen 217 ESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQ 296 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4667899999999999999998633322222223444444443 233233333333333333 255544444444444
Q ss_pred HH
Q 019982 115 LE 116 (333)
Q Consensus 115 LE 116 (333)
.|
T Consensus 297 yE 298 (305)
T PF14915_consen 297 YE 298 (305)
T ss_pred HH
Confidence 44
No 408
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=51.06 E-value=1.5e+02 Score=29.71 Aligned_cols=65 Identities=15% Similarity=0.392 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 47 ~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
.|..++..+|++-.++...+.++.+++-++= ++-....++..+|-.+|+.+-..+-.|..++.+|
T Consensus 31 El~~~~~~~~ekRdeln~kvrE~~e~~~elr----~~rdeineev~elK~kR~ein~kl~eL~~~~~~l 95 (294)
T COG1340 31 ELRKEASELAEKRDELNAKVRELREKAQELR----EERDEINEEVQELKEKRDEINAKLQELRKEYREL 95 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433333332 2333555555566666666555555555555544
No 409
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=50.91 E-value=59 Score=28.16 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 63 DSRIAELQSQIESIYSSLSDKLGQAQADKE-RLSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 63 d~~i~~Lq~rv~~le~aL~~rL~~a~~e~~-kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
|+++.+++..-..+|.-.+.|+...+++-. -=++|-+.|-.-|-.|.|.|++||+
T Consensus 49 ddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Len 104 (108)
T COG3937 49 DDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLEN 104 (108)
T ss_pred HHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666677777776655 1123557888888899999999986
No 410
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=50.68 E-value=1.3e+02 Score=26.06 Aligned_cols=13 Identities=8% Similarity=0.204 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 019982 93 RLSKENEALTNTV 105 (333)
Q Consensus 93 kL~kE~~sLa~Tv 105 (333)
.|.++-+.|++.+
T Consensus 122 ~l~~qv~~~~~~~ 134 (141)
T PRK08476 122 QLLSQMPEFKEAL 134 (141)
T ss_pred HHHHhHHHHHHHH
Confidence 3444444555444
No 411
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=50.58 E-value=1.8e+02 Score=34.51 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=28.0
Q ss_pred CccchHHHHHHHHhccCHHHHHHHHHHHHHHhhccccHHHHHHhhh
Q 019982 265 TRVDGKEFFRQVRNRLSYEQFAIFLANVKELNAHKQTKEETLRKTD 310 (333)
Q Consensus 265 ~rVDGKEFFRQARsRLSYEQFsaFLANIKELNAhkQTREETL~KAe 310 (333)
.+-+++|-+..+++ +|...-..+|+++...+-.+| |+++.
T Consensus 617 ~~~~~~e~~~~l~~-----~i~sL~~~~~~~~~~l~k~~e-l~r~~ 656 (1317)
T KOG0612|consen 617 QRTEISEIIAELKE-----EISSLEETLKAGKKELLKVEE-LKREN 656 (1317)
T ss_pred HHHHHHHHHHHHHh-----HHHHHHHHHHhhhhHHHHHHH-HHHHH
Confidence 56677788888885 455666777777777777777 66653
No 412
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.56 E-value=1.4e+02 Score=24.43 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019982 65 RIAELQSQIESIYSSLS 81 (333)
Q Consensus 65 ~i~~Lq~rv~~le~aL~ 81 (333)
.|.+|.++-.+|....+
T Consensus 26 EieELKEknn~l~~e~q 42 (79)
T COG3074 26 EIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHhhHhHHHHH
Confidence 34444444444444333
No 413
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=50.50 E-value=92 Score=30.60 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 83 KLGQAQADKERLSKENEALTNTVRK 107 (333)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKK 107 (333)
.+..+.++..++.+.-++|..-.+.
T Consensus 170 ai~~~~~~~~~~~~~l~~l~~de~~ 194 (267)
T PF10234_consen 170 AIKAVQQQLQQTQQQLNNLASDEAN 194 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 414
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=50.38 E-value=1.7e+02 Score=32.62 Aligned_cols=80 Identities=23% Similarity=0.296 Sum_probs=50.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
++...+++|+.|...+-+.+..=-..+.++...+..|...+- ++|.+.......+.-|.+-+....++|.-++ |
T Consensus 535 ~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~---e 611 (698)
T KOG0978|consen 535 GLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEEL---E 611 (698)
T ss_pred HhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 455667777777777777776666666666666666665555 6666666666666666666666555555443 3
Q ss_pred HHHHHH
Q 019982 117 VFRKTL 122 (333)
Q Consensus 117 ~FKk~L 122 (333)
.||+.|
T Consensus 612 ~L~~kl 617 (698)
T KOG0978|consen 612 RLKRKL 617 (698)
T ss_pred HHHHHH
Confidence 344444
No 415
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=50.36 E-value=1.9e+02 Score=32.19 Aligned_cols=76 Identities=24% Similarity=0.315 Sum_probs=32.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lmq 124 (333)
|.++|.|+.+-++++.++.+.+.++++++.++-...| +..+-++=..+...|...+|+..-.|..||-.++.+|+
T Consensus 188 l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~q-----q~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q 262 (716)
T KOG4593|consen 188 LQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQ-----QNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQ 262 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555544444444433322222 11111222223333444444444445555555555554
Q ss_pred h
Q 019982 125 S 125 (333)
Q Consensus 125 S 125 (333)
-
T Consensus 263 ~ 263 (716)
T KOG4593|consen 263 L 263 (716)
T ss_pred H
Confidence 3
No 416
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=50.25 E-value=1.4e+02 Score=24.49 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=20.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~l 76 (333)
+.+.|..+|...+..|+..+.+.+....+|+..+.++
T Consensus 32 ~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~I 68 (99)
T PF10046_consen 32 ATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQI 68 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666665555555444444444333
No 417
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=50.23 E-value=1.5e+02 Score=32.61 Aligned_cols=65 Identities=18% Similarity=0.314 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHhhccccc
Q 019982 66 IAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE---VFRKTLVQSLKDDE 130 (333)
Q Consensus 66 i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE---~FKk~LmqSLqeD~ 130 (333)
|..|+.++..|...+. +......++.+...++...+..-++.++.+|-.-+ .-+|.|-+-++|=.
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLk 313 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELK 313 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666666665555 33334444444444444444444444444444333 45555555555443
No 418
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=50.02 E-value=1.7e+02 Score=25.25 Aligned_cols=52 Identities=15% Similarity=0.343 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019982 75 SIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (333)
Q Consensus 75 ~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 126 (333)
.|...|..+...+-.-+.+|.+|-..|..++.+|.+...++..+=..+=+.|
T Consensus 33 ~l~d~ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~L 84 (121)
T PF06320_consen 33 ALVDHLNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDAL 84 (121)
T ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444455555555555555555555555444333333333
No 419
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=49.93 E-value=35 Score=25.39 Aligned_cols=47 Identities=17% Similarity=0.371 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019982 66 IAELQSQIESIYSSLS-DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (333)
Q Consensus 66 i~~Lq~rv~~le~aL~-~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk 120 (333)
..||++++.++..+|. -|+..+.....+ ...++.+-||+|++.++.+
T Consensus 7 ~~EL~~~l~~lr~eLf~Lr~~~~~~~~~~--------~~~i~~~Rk~IARi~Tvl~ 54 (55)
T TIGR00012 7 KEELAKKLDELKKELFELRFQKATGQLAK--------PHRIRQVRRDIARLLTVLR 54 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccc--------chHHHHHHHHHHHHHHHHh
Confidence 4677888888877776 444444333221 3467888999999988753
No 420
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=49.91 E-value=1.2e+02 Score=33.73 Aligned_cols=84 Identities=24% Similarity=0.332 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH----
Q 019982 30 LDVARKITSIAISTRVSDLESEHSAL-------RSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKE---- 92 (333)
Q Consensus 30 LdvArkIts~A~atRVs~LEsE~~~L-------R~~laEKd~~i~~Lq~rv~~le~aL~------~rL~~a~~e~~---- 92 (333)
|-.|..-.-..+.+++..||-.+..| -..|++-.+....|+++++....+|. .+|+.-.-++.
T Consensus 156 Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~ 235 (739)
T PF07111_consen 156 LTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEV 235 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCccc
Confidence 34455555566666776666544333 33444434444455555554444443 45554443332
Q ss_pred ---HHHHHHHHHHHHHHHHhhhHH
Q 019982 93 ---RLSKENEALTNTVRKLQRDVS 113 (333)
Q Consensus 93 ---kL~kE~~sLa~TvKKL~RDva 113 (333)
.-..||..|.+||++|..|=+
T Consensus 236 ~~~~we~Er~~L~~tVq~L~edR~ 259 (739)
T PF07111_consen 236 HSQAWEPEREELLETVQHLQEDRD 259 (739)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 223566666666666666644
No 421
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.90 E-value=1.7e+02 Score=30.18 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=49.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019982 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (333)
Q Consensus 44 RVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~ 121 (333)
|.+=.++-..+||..+.|+-...-.+|+-+..-+. ......+||..|+..|-.++-+|+.+.+=|.+-++.
T Consensus 208 rasvisa~~eklR~r~eeeme~~~aeq~slkRt~E-------eL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 208 RASVISAVREKLRRRREEEMERLQAEQESLKRTEE-------ELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34445556667777776665555555555444444 334667889999999999999999998888777665
No 422
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=49.76 E-value=2.3e+02 Score=28.07 Aligned_cols=40 Identities=23% Similarity=0.155 Sum_probs=25.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
..||+-|=.|++.+=...+.+-+....-=+.|-..|..|+
T Consensus 102 sDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~ 141 (271)
T PF13805_consen 102 SDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQ 141 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666667766666666666655555555556666666
No 423
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=49.68 E-value=1e+02 Score=35.76 Aligned_cols=78 Identities=18% Similarity=0.375 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019982 53 SALRSQLAEKDSRIAELQSQIESIYSSLS---------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (333)
Q Consensus 53 ~~LR~~laEKd~~i~~Lq~rv~~le~aL~---------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lm 123 (333)
+..+..++.-|.+|.+.++.+++.-.-|. .||..+.-+.....+.-+.+..++++|..++.-++.-|..++
T Consensus 265 ~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fe 344 (1141)
T KOG0018|consen 265 GKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFE 344 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666777777777766111111 788888888888999999999999999999998888887777
Q ss_pred hhccccc
Q 019982 124 QSLKDDE 130 (333)
Q Consensus 124 qSLqeD~ 130 (333)
.-+++..
T Consensus 345 kei~~~~ 351 (1141)
T KOG0018|consen 345 KEIEERS 351 (1141)
T ss_pred HHHHHHH
Confidence 6655543
No 424
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=49.54 E-value=1.1e+02 Score=28.87 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019982 60 AEKDSRIAELQSQIESIYS 78 (333)
Q Consensus 60 aEKd~~i~~Lq~rv~~le~ 78 (333)
.+||+.|+.+++++..++.
T Consensus 103 ~~kd~~i~~~~~~l~~~~~ 121 (196)
T PF15272_consen 103 IEKDREIRTLQDELLSLEL 121 (196)
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 5677777777766654443
No 425
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=49.39 E-value=96 Score=30.78 Aligned_cols=42 Identities=14% Similarity=0.381 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019982 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (333)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 127 (333)
||++.++...-|--+|.-|+++|.+|.+-|+. ||+++|.-+.
T Consensus 228 risrLEdkv~~lk~~n~~L~~~l~~l~~~v~e---~k~~V~~hi~ 269 (279)
T KOG0837|consen 228 RISRLEDKVKTLKIYNRDLASELSKLKEQVAE---LKQKVMEHIH 269 (279)
T ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 45555566666777888999999999988765 5888887554
No 426
>PRK02119 hypothetical protein; Provisional
Probab=49.36 E-value=1.2e+02 Score=23.97 Aligned_cols=25 Identities=4% Similarity=-0.036 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 019982 86 QAQADKERLSKENEALTNTVRKLQR 110 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~R 110 (333)
...+-..+.+++-+.|...++.|..
T Consensus 27 ~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 27 ELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445555555555555543
No 427
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=49.25 E-value=51 Score=27.02 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019982 61 EKDSRIAELQSQIESIY 77 (333)
Q Consensus 61 EKd~~i~~Lq~rv~~le 77 (333)
.++..+..|.+++..++
T Consensus 60 ~~~ea~~~Le~~~e~le 76 (105)
T cd00632 60 EKEEARTELKERLETIE 76 (105)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 428
>PF04363 DUF496: Protein of unknown function (DUF496); InterPro: IPR007458 Members of this family are uncharacterised proteins.
Probab=49.18 E-value=1.3e+02 Score=25.49 Aligned_cols=56 Identities=16% Similarity=0.360 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 53 SALRSQLAEKDSRIAELQSQIESIYSSLS-----------------------DKLGQAQADKERLSKENEALTNTVRKL 108 (333)
Q Consensus 53 ~~LR~~laEKd~~i~~Lq~rv~~le~aL~-----------------------~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (333)
-+|...+.+-++.|.+=|+||.-|+.-.+ +|.-.-.=.++.|.|||..+...+|.+
T Consensus 15 NKl~REi~Dn~kKIRDNqKRV~LLdNL~~YI~~~Ms~edi~~II~nMr~DYEdRVDDyiIknAElsKeRReis~k~k~~ 93 (95)
T PF04363_consen 15 NKLKREIEDNEKKIRDNQKRVLLLDNLSDYIKPDMSIEDIRAIIENMRSDYEDRVDDYIIKNAELSKERREISKKIKEL 93 (95)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhHHHHhHHHHHHhhHHHhHHHHHHHHHHHHh
Confidence 56777888899999999999999987655 222222234588999999888887765
No 429
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=49.16 E-value=53 Score=25.76 Aligned_cols=49 Identities=12% Similarity=0.147 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019982 65 RIAELQSQIESIYSSLS-DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (333)
Q Consensus 65 ~i~~Lq~rv~~le~aL~-~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~ 121 (333)
-+.||++++.+|..+|- -|+.++.....+ ...++.+.||+|++.++...
T Consensus 13 s~~eL~~~l~elk~elf~LRfq~atgql~n--------~~~ir~~RrdIARikTil~e 62 (67)
T CHL00154 13 TDSEISEEIIKTKKELFDLRLKKATRQNFK--------PHLFKHKKHRLAQLLTLLSS 62 (67)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCcccC--------hHHHHHHHHHHHHHHHHHHH
Confidence 35678888887777776 444444443222 24578899999999887653
No 430
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=49.08 E-value=14 Score=27.94 Aligned_cols=28 Identities=39% Similarity=0.544 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 019982 33 ARKITSIAISTRVSDLESEHSALRSQLA 60 (333)
Q Consensus 33 ArkIts~A~atRVs~LEsE~~~LR~~la 60 (333)
||.....+...|+++||.|-..||.+|.
T Consensus 19 ~R~~d~~~a~~rl~~l~~EN~~Lr~eL~ 46 (52)
T PF12808_consen 19 ARSLDRSAARKRLSKLEGENRLLRAELE 46 (52)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 5666778888999999999999998885
No 431
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=49.00 E-value=1.6e+02 Score=26.67 Aligned_cols=59 Identities=31% Similarity=0.462 Sum_probs=31.0
Q ss_pred CCCChHHHHhcCCCChhh--hHHHHHHHH--HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 11 TFDLPEEVLQVLPSDPFE--QLDVARKIT--SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (333)
Q Consensus 11 ~f~Lp~eilaVLPsDPyE--QLdvArkIt--s~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~ 74 (333)
+=.+|+.+- ++|-.|++ +=++|--|+ .+=|=+=|..|=.|-+.--.+|.+ |+.||++..
T Consensus 39 e~~~~~~~~-~~pa~p~~~~~~~laa~i~~~akqId~LIdsLP~~~~~~e~Ql~~----i~kLq~en~ 101 (139)
T KOG1510|consen 39 EPESPDKVN-PIPAEPFEEYAQLLAADIAKKAKQIDTLIDSLPGEEGSAEAQLEK----IKKLQEENE 101 (139)
T ss_pred CCCCCCCCC-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHH----HHHHHHHHH
Confidence 556777776 88888883 223333332 233444455555555544444433 555554444
No 432
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=48.96 E-value=1.7e+02 Score=30.31 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 54 ALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (333)
Q Consensus 54 ~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~T 104 (333)
.|-.++..=++.|+.|++|+..+|..|..+..+.+.-..+|..-.+.|.++
T Consensus 410 ~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mns~~s~L~~q 460 (462)
T PRK08032 410 GVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQ 460 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444445555555555555555544444444455555555555554
No 433
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=48.95 E-value=1.7e+02 Score=32.51 Aligned_cols=8 Identities=13% Similarity=0.750 Sum_probs=4.4
Q ss_pred CCChHHHH
Q 019982 12 FDLPEEVL 19 (333)
Q Consensus 12 f~Lp~eil 19 (333)
++||++|+
T Consensus 492 ~Glp~~ii 499 (771)
T TIGR01069 492 YGIPHFII 499 (771)
T ss_pred hCcCHHHH
Confidence 44565555
No 434
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=48.68 E-value=1.1e+02 Score=34.45 Aligned_cols=74 Identities=28% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHH---------HHHH----------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 019982 37 TSIAISTRVSDLESEHSALRSQLA---------EKDS----------RIAELQSQIESIYSSLS---DKLGQAQADKERL 94 (333)
Q Consensus 37 ts~A~atRVs~LEsE~~~LR~~la---------EKd~----------~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL 94 (333)
+-||+| |.-|-+|.+.||.+|. ||.. ++..||..--.|+.+|+ .-+......|+.|
T Consensus 383 ~EIALA--~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneel 460 (861)
T PF15254_consen 383 VEIALA--MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEEL 460 (861)
T ss_pred hhhHhh--hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHH
Q ss_pred HHHHHHHHHHHHHHhhhH
Q 019982 95 SKENEALTNTVRKLQRDV 112 (333)
Q Consensus 95 ~kE~~sLa~TvKKL~RDv 112 (333)
.|..+++..--|+|...+
T Consensus 461 lk~~e~q~~Enk~~~~~~ 478 (861)
T PF15254_consen 461 LKVIENQKEENKRLRKMF 478 (861)
T ss_pred HHHHHHHHHHHHHHHHHH
No 435
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=48.66 E-value=2.2e+02 Score=26.28 Aligned_cols=29 Identities=41% Similarity=0.525 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 88 QADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 88 ~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
.+....|..+-+.+..+|.+|.+.+.+|+
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~ 126 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQ 126 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666665553
No 436
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=48.65 E-value=66 Score=25.38 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRD 111 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RD 111 (333)
+.....++|..||..|-..+..+..+
T Consensus 11 ~Li~~~~~L~~EN~~Lr~q~~~~~~E 36 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRAQEKTWREE 36 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444
No 437
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=48.32 E-value=1e+02 Score=28.34 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHhhcccccCC
Q 019982 90 DKERLSKENEALTNTVRKLQRDV---SKLEVFRKTLVQSLKDDEDA 132 (333)
Q Consensus 90 e~~kL~kE~~sLa~TvKKL~RDv---aKLE~FKk~LmqSLqeD~~~ 132 (333)
+-..-+.+|+.+.+.+..|...+ .-|+.+-..|-+.|+++-+-
T Consensus 65 ~Li~~Ar~Ne~~~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~f~~ 110 (225)
T PF04340_consen 65 ELIENARENEAIFQRLHRLVLALLAARSLQELLQALDDGLREDFDV 110 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHTS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Confidence 45556777888887777777765 34778888899999887653
No 438
>PF14992 TMCO5: TMCO5 family
Probab=48.30 E-value=1.1e+02 Score=30.34 Aligned_cols=79 Identities=24% Similarity=0.350 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH---HHHHHHHHHHHHHHHHHHHH---------
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIE-----------SIYSSLS---DKLGQAQADKERLSKENEAL--------- 101 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~-----------~le~aL~---~rL~~a~~e~~kL~kE~~sL--------- 101 (333)
+..||-|.++|-.+-.---+-|.+||.++. ++...|+ .+|..++.+++.+-++-..+
T Consensus 65 l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~ 144 (280)
T PF14992_consen 65 LQELELETAKLEKENEHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQ 144 (280)
T ss_pred HHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----HHHHHHHhhhHHHHHHHHHHHH
Q 019982 102 -----TNTVRKLQRDVSKLEVFRKTLV 123 (333)
Q Consensus 102 -----a~TvKKL~RDvaKLE~FKk~Lm 123 (333)
++-++||...+.|+|..|-.++
T Consensus 145 l~eDq~~~i~klkE~L~rmE~ekE~~l 171 (280)
T PF14992_consen 145 LCEDQANEIKKLKEKLRRMEEEKEMLL 171 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 439
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=48.17 E-value=2.3e+02 Score=29.82 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=22.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
+...|..+..|+...+..|......+..|+.-+..|...|.
T Consensus 279 ~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe 319 (522)
T PF05701_consen 279 LQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELE 319 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555555544
No 440
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=48.03 E-value=1.2e+02 Score=32.20 Aligned_cols=59 Identities=24% Similarity=0.342 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019982 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (333)
Q Consensus 52 ~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (333)
+.+|=..|..|-+++.-+..++..++ .|...+.++..+|.-.-+.|....|.|+..+.+
T Consensus 434 vdrl~~~L~qk~~~~~k~~~~~~~l~----~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 434 VDRLVESLQQKLKQEEKLRRKREDLE----EKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555 566689999999999999999999998876654
No 441
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=47.83 E-value=1e+02 Score=23.51 Aligned_cols=27 Identities=22% Similarity=0.430 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 48 LESEHSALRSQLAEKDSRIAELQSQIE 74 (333)
Q Consensus 48 LEsE~~~LR~~laEKd~~i~~Lq~rv~ 74 (333)
++.|+.+|..++..=...|..++.+++
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567777777777666666666665554
No 442
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=47.78 E-value=2.5e+02 Score=26.52 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019982 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (333)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~ 121 (333)
.+....+||.+|.+|+..|...+-.|+.--+..+.+|+.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~l 108 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777777777777777665555555556553
No 443
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=47.76 E-value=2.7e+02 Score=32.40 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=42.1
Q ss_pred cCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 21 VLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIA-------ELQSQIESIYSSLSDKLGQAQADKER 93 (333)
Q Consensus 21 VLPsDPyEQLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~-------~Lq~rv~~le~aL~~rL~~a~~e~~k 93 (333)
.||.|=|-|...=++ +-+-.+..||.|+.-++.+|.+-.+... .|.++...++..|+ ....+...
T Consensus 430 yisee~y~~~e~e~~----~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~----~~~~el~~ 501 (1041)
T KOG0243|consen 430 YISEERYTQEEKEKK----EMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQ----NKNKELES 501 (1041)
T ss_pred EechHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 366666765533322 2334455555555555555554444444 77777777776666 44444555
Q ss_pred HHHHHHHHHHHHHH
Q 019982 94 LSKENEALTNTVRK 107 (333)
Q Consensus 94 L~kE~~sLa~TvKK 107 (333)
+.+|...+-.++++
T Consensus 502 ~~ee~~~~~~~l~~ 515 (1041)
T KOG0243|consen 502 LKEELQQAKATLKE 515 (1041)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555333
No 444
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.74 E-value=2.3e+02 Score=32.43 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019982 91 KERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (333)
Q Consensus 91 ~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lmq 124 (333)
.++-.+|-+.+-++.|+|.-||.++-.=|+.||.
T Consensus 558 ~esk~~eidi~n~qlkelk~~~~~q~lake~~yk 591 (1118)
T KOG1029|consen 558 TESKLNEIDIFNNQLKELKEDVNSQQLAKEELYK 591 (1118)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677888888888887766655555554
No 445
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=47.71 E-value=1.3e+02 Score=29.60 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 56 RSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 56 R~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
|.+.-|.|..+.-|+.++..++..+.
T Consensus 160 ~~~~~e~d~rnq~l~~~i~~l~~~l~ 185 (264)
T PF07246_consen 160 KTQERENDRRNQILSHEISNLTNELS 185 (264)
T ss_pred HhhchhhhhHHHHHHHHHHHhhhhHH
Confidence 55555557777777777777777776
No 446
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=47.63 E-value=2.4e+02 Score=26.35 Aligned_cols=26 Identities=35% Similarity=0.356 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHH
Q 019982 28 EQLDVARKITSIAISTRVSDLESEHS 53 (333)
Q Consensus 28 EQLdvArkIts~A~atRVs~LEsE~~ 53 (333)
-|||.-||.+..|=.-|-.-||..+.
T Consensus 78 KQLeyMRkmv~~ae~er~~~le~q~~ 103 (178)
T PF14073_consen 78 KQLEYMRKMVESAEKERNAVLEQQVS 103 (178)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 35666666666666555555555443
No 447
>PHA00489 scaffolding protein
Probab=47.60 E-value=74 Score=27.04 Aligned_cols=49 Identities=24% Similarity=0.333 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019982 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (333)
Q Consensus 60 aEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (333)
.||.+.+..||+-|.+.-..+. ...+--+||.+||+-|...-.||-|.|
T Consensus 23 sErTeaLqqlr~~ygSf~sEy~----elT~a~eKl~aek~DLivsNskLFrql 71 (101)
T PHA00489 23 SERTEALQQLRESYGSFHSEYE----ELTEALEKLTAEKEDLIVSNSKLFRQL 71 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhhhhhhhHHHHHHc
Confidence 3788889999999988888876 667777899999999998888887655
No 448
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=47.40 E-value=1.7e+02 Score=26.27 Aligned_cols=66 Identities=20% Similarity=0.228 Sum_probs=41.6
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 019982 53 SALRSQLA--EKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (333)
Q Consensus 53 ~~LR~~la--EKd~~i~~Lq~rv~~le~aL~--~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FK 119 (333)
+.|=++|- .|++++.==|.|-.--.+-+. =|.+.. +.+..|.+||..|.+.|++|.++++.+--=.
T Consensus 35 ReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv-~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~ 104 (135)
T KOG4196|consen 35 RELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRV-QQKHELEKEKAELQQQVEKLKEENSRLRREL 104 (135)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 566666555555443333333 344443 3467899999999999999999998864433
No 449
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=47.04 E-value=1.4e+02 Score=23.57 Aligned_cols=71 Identities=17% Similarity=0.267 Sum_probs=38.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH-
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------------DKLGQAQADKERLSKENEALTNTVR- 106 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~-----------------~rL~~a~~e~~kL~kE~~sLa~TvK- 106 (333)
|..|=.|+.+.=..+.|.|..+.++...+...=..+. .++....++..+|.+|+-.||.++-
T Consensus 10 ~~~LP~el~r~l~~irelD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~deKv~lA~~~~d 89 (105)
T PF12998_consen 10 LENLPAELQRNLTLIRELDAKSQDLLEELDQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERALELSDEKVALAQQAYD 89 (105)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555444444333222221 4556666777788888888877643
Q ss_pred HHhhhHHHH
Q 019982 107 KLQRDVSKL 115 (333)
Q Consensus 107 KL~RDvaKL 115 (333)
-+.|.+.+|
T Consensus 90 ~v~~hi~rL 98 (105)
T PF12998_consen 90 LVDRHIRRL 98 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 234444444
No 450
>PF13166 AAA_13: AAA domain
Probab=47.03 E-value=3.1e+02 Score=29.13 Aligned_cols=10 Identities=0% Similarity=0.248 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 019982 286 AIFLANVKEL 295 (333)
Q Consensus 286 saFLANIKEL 295 (333)
...+..|+++
T Consensus 617 ~~l~~~l~~~ 626 (712)
T PF13166_consen 617 HYLFKELYDF 626 (712)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 451
>PRK11519 tyrosine kinase; Provisional
Probab=46.91 E-value=2.6e+02 Score=30.41 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=19.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhcccccC
Q 019982 104 TVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (333)
Q Consensus 104 TvKKL~RDvaKLE~FKk~LmqSLqeD~~ 131 (333)
....|.||+.--+..=..|++.+++-.-
T Consensus 371 ~~~~L~Re~~~~~~lY~~lL~r~~e~~i 398 (719)
T PRK11519 371 EIVRLTRDVESGQQVYMQLLNKQQELKI 398 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4456778887777777778888777543
No 452
>PF11418 Scaffolding_pro: Phi29 scaffolding protein; InterPro: IPR024374 This protein is also referred to as Gp7. The protein contains a DNA-binding function and may have a role in mediating the structural transition from prohead to mature virus and also scaffold release [].Gp7 is arranged within the capsid as a series of concentric shells [].; PDB: 1NOH_C 1NO4_C 3MTU_E 3OA7_A.
Probab=46.84 E-value=1.5e+02 Score=25.13 Aligned_cols=49 Identities=24% Similarity=0.307 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019982 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (333)
Q Consensus 60 aEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (333)
.||.+.+..||+-|.+.-..+. ....--+||.+||+-|...-.||-|.+
T Consensus 22 sErTeaLqqlr~~~~sf~sEy~----dlT~~~eKl~aek~DL~vsNskLFrQ~ 70 (97)
T PF11418_consen 22 SERTEALQQLRESYTSFHSEYE----DLTEALEKLTAEKEDLIVSNSKLFRQH 70 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhhhhhhhHHHHHHh
Confidence 4788888999999888887776 667777899999999988888876655
No 453
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=46.29 E-value=1.9e+02 Score=27.37 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019982 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 62 Kd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (333)
-.....+|+.+|..|+..|.+.......+..+|.++...+.-..+.|.
T Consensus 80 ~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~ 127 (196)
T PF15272_consen 80 SSKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQ 127 (196)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677889999999999987777788888888888888888888887
No 454
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=46.19 E-value=55 Score=28.95 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 46 SDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (333)
Q Consensus 46 s~LEsE~~~LR~~laEKd~~i~~Lq~rv~~l 76 (333)
...|.-+.+|..++..||.+|..|++++..+
T Consensus 90 ~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~ 120 (131)
T PF04859_consen 90 KTYEIVVKKLEAELRAKDSEIDRLREKLDEL 120 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555554433
No 455
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=46.18 E-value=2.4e+02 Score=25.87 Aligned_cols=21 Identities=14% Similarity=0.340 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019982 61 EKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 61 EKd~~i~~Lq~rv~~le~aL~ 81 (333)
++...+..++.|+..-|..|.
T Consensus 75 ~~~~el~~~E~rl~~rE~~L~ 95 (201)
T PF12072_consen 75 ERRKELQRLEKRLQQREEQLD 95 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555554
No 456
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=46.17 E-value=46 Score=27.18 Aligned_cols=64 Identities=22% Similarity=0.432 Sum_probs=40.9
Q ss_pred CCChHHHHhcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 12 FDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (333)
Q Consensus 12 f~Lp~eilaVLPsDPyEQLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le 77 (333)
..-++.|+-.|-.|=|-.+++..-|- =+..|+..|+..+..|+.++.+....+..++..++.+-
T Consensus 55 i~~~~~vlV~lG~~~~vE~s~~eA~~--~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 55 IPDTDKVLVSLGAGYYVEMSLEEAIE--FLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp -SSTTEEEEEEETTEEEEEEHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred eCCCCEEEEEeeCCeEEEecHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555555544433222 14578888888888888888888888888877766543
No 457
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=46.16 E-value=2.5e+02 Score=26.02 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019982 85 GQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (333)
Q Consensus 85 ~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 126 (333)
+.|++++.........|..++..+...|.+|+.=-..|=+-|
T Consensus 88 r~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki 129 (219)
T TIGR02977 88 RAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKL 129 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666655444443333
No 458
>PRK10869 recombination and repair protein; Provisional
Probab=46.03 E-value=1.1e+02 Score=32.53 Aligned_cols=50 Identities=12% Similarity=0.172 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----HHHHHHHHHhhcccccC
Q 019982 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSK-----LEVFRKTLVQSLKDDED 131 (333)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK-----LE~FKk~LmqSLqeD~~ 131 (333)
..|....++.++|.++.+.|...++++...|++ .+.|.+.|.+-|.+=.-
T Consensus 334 ~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L~m 388 (553)
T PRK10869 334 QQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHELSM 388 (553)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345555666777888888888888888877774 56788888777766443
No 459
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=45.99 E-value=1.5e+02 Score=26.26 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=23.8
Q ss_pred CCCChHHHHhcCCCCh---hhhHHHHHHHHHHHHHHhhhhhHHHH
Q 019982 11 TFDLPEEVLQVLPSDP---FEQLDVARKITSIAISTRVSDLESEH 52 (333)
Q Consensus 11 ~f~Lp~eilaVLPsDP---yEQLdvArkIts~A~atRVs~LEsE~ 52 (333)
..++.+.+|.=|=+-| |-.-..+-+.+.--|+.++.+||.|.
T Consensus 7 pv~fS~~ll~~L~~s~etD~sR~q~~e~~iq~Rva~eL~~L~~~~ 51 (142)
T PF07956_consen 7 PVQFSQSLLSQLQSSTETDSSRAQTLELHIQERVAEELKRLEEEE 51 (142)
T ss_pred CcccCHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677776664332 33444445555666666666666654
No 460
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=45.48 E-value=7 Score=41.22 Aligned_cols=58 Identities=17% Similarity=0.290 Sum_probs=0.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 019982 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEA 100 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~-------~rL~~a~~e~~kL~kE~~s 100 (333)
.+|.+.|.||..|+++|..=.+.+++-+.|+-.=|.+.+ +||...+++..+++.|+|.
T Consensus 369 ~~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~ 433 (495)
T PF12004_consen 369 KEVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDS 433 (495)
T ss_dssp -----------------------------------------------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHH
No 461
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=45.45 E-value=1.8e+02 Score=33.85 Aligned_cols=70 Identities=29% Similarity=0.385 Sum_probs=47.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
.-+...|.-|+..|+..+.+|+++|.+|..-+.+.. +|+..+..++.-|..+++.|..+=|-|-|.=.||
T Consensus 410 ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~----~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l 479 (1200)
T KOG0964|consen 410 KEQENILQKEIEDLESELKEKLEEIKELESSINETK----GRMEEFDAENTELKRELDELQDKRKELWREEKKL 479 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888899999999999998888877666544 3444555566666666666666666666655554
No 462
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=45.30 E-value=1.9e+02 Score=33.64 Aligned_cols=101 Identities=22% Similarity=0.349 Sum_probs=63.9
Q ss_pred hhhHHHHHHHHHHHHHHhh--------hhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 019982 27 FEQLDVARKITSIAISTRV--------SDLES-------EHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQ 88 (333)
Q Consensus 27 yEQLdvArkIts~A~atRV--------s~LEs-------E~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~ 88 (333)
|++||=-||+.--+|-.|- -+||. +...++..+.+..+.+++|...+.+|+..|. .-..++.
T Consensus 213 Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~ 292 (1200)
T KOG0964|consen 213 YQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLK 292 (1200)
T ss_pred HHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888887776552 23332 2345666777778888888888888887776 2222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019982 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (333)
Q Consensus 89 ~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 127 (333)
.+..+..+++-.|--.+|-|++.+.-=+-=|...++.||
T Consensus 293 a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~ 331 (1200)
T KOG0964|consen 293 ARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQ 331 (1200)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHH
Confidence 444455555777777778777766544433333333333
No 463
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=45.13 E-value=1.3e+02 Score=27.93 Aligned_cols=49 Identities=22% Similarity=0.345 Sum_probs=38.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERL 94 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL 94 (333)
..-+...+.=+....+.|.||..+++.-+.||..|...|. .+..|-++.
T Consensus 122 ~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~----~Ar~D~~~t 170 (188)
T PF05335_consen 122 QANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQ----AARADYEKT 170 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 4456666777788889999999999999999999998887 555555443
No 464
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=45.09 E-value=1.4e+02 Score=31.78 Aligned_cols=36 Identities=33% Similarity=0.416 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019982 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (333)
Q Consensus 89 ~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 127 (333)
|--++|..|-..| |.+|-+-++|||+=||-|..-|-
T Consensus 190 ~lentlEQEqEal---vN~LwKrmdkLe~ekr~Lq~KlD 225 (552)
T KOG2129|consen 190 QLENTLEQEQEAL---VNSLWKRMDKLEQEKRYLQKKLD 225 (552)
T ss_pred HHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345555666655 45778889999999999999993
No 465
>PHA03332 membrane glycoprotein; Provisional
Probab=45.01 E-value=3e+02 Score=32.43 Aligned_cols=55 Identities=13% Similarity=0.224 Sum_probs=33.6
Q ss_pred HhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 43 TRVSDLESEHSALRSQLA----EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKE 97 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~la----EKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE 97 (333)
.||++|..-+.+|=..|+ +-|+-|.+-..||+.||.++..|+.......++|+..
T Consensus 905 aAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~q 963 (1328)
T PHA03332 905 ARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQ 963 (1328)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666665555544443 5677777777788888877775555555544444444
No 466
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=44.98 E-value=56 Score=36.89 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 48 LESEHSALRSQLAEKDSRIAELQSQIE 74 (333)
Q Consensus 48 LEsE~~~LR~~laEKd~~i~~Lq~rv~ 74 (333)
+++|+.+|..++..-+..|+.++.+++
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~ 953 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKIS 953 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445555555544444444444444443
No 467
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=44.98 E-value=1.6e+02 Score=23.51 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 65 RIAELQSQIESIYSSLS----DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 65 ~i~~Lq~rv~~le~aL~----~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
...+|.=||--||..|+ +-...+..+|..|--|..+|...++.+.+-|.+++
T Consensus 15 ENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 15 ENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred hhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666665555 33345555555555555555555555555554443
No 468
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=44.95 E-value=1.4e+02 Score=25.47 Aligned_cols=43 Identities=30% Similarity=0.403 Sum_probs=26.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
-+|...|..|..-+.+||.++.|.=+.|..+..++..+..++.
T Consensus 75 ~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~ 117 (132)
T PF10392_consen 75 QAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSD 117 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666666666666655555543
No 469
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=44.89 E-value=2.3e+02 Score=30.16 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019982 33 ARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (333)
Q Consensus 33 ArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (333)
|-.||+-+--.+...+++++.+||..+..=.+.+.+|+.=+..+=.+++ +.|+.. |+.|.-++.+|..++
T Consensus 105 aaqitA~vAl~~a~~na~~I~~lk~si~~tN~AV~~l~~g~~~~~~av~-----~lQd~I-----N~~i~Pain~l~C~v 174 (490)
T PF00523_consen 105 AAQITAAVALHQAQQNAANILRLKESIQSTNEAVQELTNGLSQLAVAVQ-----ALQDFI-----NNEIIPAINQLSCEV 174 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH-----HHTHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHhhHHhHHHHHHHhhhhhcccccceecchHHHHHHHHHH-----HHHHHH-----HHHhhhhhhhcchhh
Confidence 5568887777899999999999999999999999999999998888875 444432 567888888888888
Q ss_pred HHHH
Q 019982 113 SKLE 116 (333)
Q Consensus 113 aKLE 116 (333)
+.+.
T Consensus 175 ~~~~ 178 (490)
T PF00523_consen 175 ADNQ 178 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7753
No 470
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=44.88 E-value=1.7e+02 Score=23.74 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 92 ERLSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
..|..|-..|...++.|.-.+..+|.
T Consensus 70 ~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 70 EELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 471
>PRK00106 hypothetical protein; Provisional
Probab=44.84 E-value=4.3e+02 Score=28.45 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019982 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (333)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 128 (333)
.+|.+..+.|...-+.|..--.+++..+....+-|+.
T Consensus 125 ~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~ 161 (535)
T PRK00106 125 KTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELER 161 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444445555444443
No 472
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=44.81 E-value=2.5e+02 Score=27.43 Aligned_cols=106 Identities=19% Similarity=0.273 Sum_probs=0.0
Q ss_pred hHHHHhcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHH-HHH
Q 019982 15 PEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQ-------------IESIY-SSL 80 (333)
Q Consensus 15 p~eilaVLPsDPyEQLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~r-------------v~~le-~aL 80 (333)
++++.+.+| ++++-+ ...+..-|..|+.-+..|..--.+|+..+.+|+++ ....+ ..+
T Consensus 170 ~~~l~~~~P-s~~~~~-------~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~lk~~~~~ddI~~~ll~~~~~~~~~~~ 241 (342)
T cd08915 170 YKELKAFIP-SPYPAL-------DPEVSEVVSSLRPLLNEVSELEKERERFISELEIKSRNNDILPKLITEYKKNGTTEF 241 (342)
T ss_pred hHHHHHhCC-CccccC-------CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHhhccccchh
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH------HHHHHhhccc
Q 019982 81 S-------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF------RKTLVQSLKD 128 (333)
Q Consensus 81 ~-------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~F------Kk~LmqSLqe 128 (333)
. .+.........+...+...|.+.++..+.++.+...+ +...++.|..
T Consensus 242 e~lf~~eL~kf~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~~~~~~~~~~~r~~~l~~L~~ 302 (342)
T cd08915 242 EDLFEEHLKKFDKDLTYVEKTKKKQIELIKEIDAANQEFSQVKNSNDSLDPREEALQDLEA 302 (342)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHH
No 473
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=44.65 E-value=3.8e+02 Score=27.80 Aligned_cols=89 Identities=24% Similarity=0.233 Sum_probs=46.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH-
Q 019982 39 IAISTRVSDLESEHSALRSQLA-EKDSRIAELQ---SQIESIYSSLSDKLGQAQADKERLSKE--------------NE- 99 (333)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~la-EKd~~i~~Lq---~rv~~le~aL~~rL~~a~~e~~kL~kE--------------~~- 99 (333)
..+......||.++.+|+.++. |-.-....|| -|++.||.++-+-+-.=..|...|..| |.
T Consensus 222 ~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaR 301 (395)
T PF10267_consen 222 REIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERAR 301 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3566777888888888887443 3333333333 355555555543222333333333333 32
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019982 100 ALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (333)
Q Consensus 100 sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (333)
.+-.-+-..+--|+||| ..++.|-.|-+
T Consensus 302 di~E~~Es~qtRisklE--~~~~Qq~~q~e 329 (395)
T PF10267_consen 302 DIWEVMESCQTRISKLE--QQQQQQVVQLE 329 (395)
T ss_pred HHHHHHHHHHHHHHHHH--HHHhhhhhhhc
Confidence 23334455555667777 56666665544
No 474
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=44.47 E-value=2.2e+02 Score=28.95 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=17.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhcccccCC
Q 019982 104 TVRKLQRDVSKLEVFRKTLVQSLKDDEDA 132 (333)
Q Consensus 104 TvKKL~RDvaKLE~FKk~LmqSLqeD~~~ 132 (333)
....|.||+.=.++.=.++++..|+....
T Consensus 374 ~l~~L~Re~~~~r~~ye~lL~r~qe~~~~ 402 (458)
T COG3206 374 QLRELEREAEAARSLYETLLQRYQELSIQ 402 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666666666666666543
No 475
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=44.41 E-value=40 Score=27.03 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=5.3
Q ss_pred hHHHHHHHHHHHH
Q 019982 48 LESEHSALRSQLA 60 (333)
Q Consensus 48 LEsE~~~LR~~la 60 (333)
++.+++.||.+|.
T Consensus 26 ~~~~~~~lk~Klq 38 (83)
T PF07544_consen 26 LDTATGSLKHKLQ 38 (83)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 476
>PRK05423 hypothetical protein; Provisional
Probab=44.40 E-value=1.3e+02 Score=25.75 Aligned_cols=56 Identities=14% Similarity=0.327 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 53 SALRSQLAEKDSRIAELQSQIESIYSSLS-----------------------DKLGQAQADKERLSKENEALTNTVRKL 108 (333)
Q Consensus 53 ~~LR~~laEKd~~i~~Lq~rv~~le~aL~-----------------------~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (333)
-+|...+.+-++.|.+=|+||.-|+.-++ +|.-.-.=.++.|.|||..|+..+|.+
T Consensus 22 NKl~REi~DnekKIRDNqKRVlLLdNL~~YIk~~Ms~e~i~~II~nMr~DYEdRVDDyiIknAElSKeRReiskklk~~ 100 (104)
T PRK05423 22 NKLQREIQDNEKKIRDNQKRVLLLDNLSDYIKPGMSIEEIQGIIANMKSDYEDRVDDYIIKNAELSKERREISKKLKAM 100 (104)
T ss_pred HHHHHHHHhhHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhHHHhhHHHHHhhHHhhHHHHHHHHHHHHh
Confidence 45677788889999999999999987655 222222334688999999998877765
No 477
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=44.13 E-value=5.1e+02 Score=30.13 Aligned_cols=39 Identities=15% Similarity=0.321 Sum_probs=19.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
.++..+|.++.....++.+-...+...+-.+..++..++
T Consensus 621 ~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1201)
T PF12128_consen 621 ERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQ 659 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 344555555555555555555555544444444444443
No 478
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=43.45 E-value=2.9e+02 Score=26.14 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHH
Q 019982 93 RLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 93 kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
.|..++.+|.+..+-|.|.-.+|
T Consensus 78 ~lEE~~~~L~aq~rqlEkE~q~L 100 (193)
T PF14662_consen 78 SLEEENRSLLAQARQLEKEQQSL 100 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555444444333
No 479
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=42.79 E-value=3.5e+02 Score=26.79 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhcccc-------HHHHHHhhhhhcC
Q 019982 284 QFAIFLANVKELNAHKQT-------KEETLRKTDEVFG 314 (333)
Q Consensus 284 QFsaFLANIKELNAhkQT-------REETL~KAeeIFG 314 (333)
++..|...=++|-.|... =++||.|..++|+
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~ 240 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFE 240 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 555555555555544422 2456666666665
No 480
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=42.68 E-value=1.9e+02 Score=31.54 Aligned_cols=32 Identities=19% Similarity=0.155 Sum_probs=24.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhcccccCC
Q 019982 101 LTNTVRKLQRDVSKLEVFRKTLVQSLKDDEDA 132 (333)
Q Consensus 101 La~TvKKL~RDvaKLE~FKk~LmqSLqeD~~~ 132 (333)
.......|.||+.-.+..=..|++..+|-.-.
T Consensus 368 ~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~ 399 (726)
T PRK09841 368 TQQEVLRLSRDVEAGRAVYLQLLNRQQELSIS 399 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678899988888888888888876544
No 481
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.62 E-value=1.8e+02 Score=27.38 Aligned_cols=81 Identities=10% Similarity=0.136 Sum_probs=51.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019982 44 RVSDLESEHSALRSQLAEKDSRIAELQ---SQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (333)
Q Consensus 44 RVs~LEsE~~~LR~~laEKd~~i~~Lq---~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk 120 (333)
+|..+|.|+..|..+|.+=-.....+- ..+...+.++. .++.+--..-.+...+++.++|...-+..++.+++
T Consensus 3 ~i~~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~----~~L~~f~~~~~~D~~i~~~l~kFs~~l~ei~~~~~ 78 (200)
T cd07639 3 AIEEVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFV----DGLCDLAHHGPKDPMMAECLEKFSDGLNHILDSHA 78 (200)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 577889999988888764332222221 13344444443 55555544444445578888888888888888888
Q ss_pred HHHhhccc
Q 019982 121 TLVQSLKD 128 (333)
Q Consensus 121 ~LmqSLqe 128 (333)
.||+..+.
T Consensus 79 ~Ll~~~~~ 86 (200)
T cd07639 79 ELLEATQF 86 (200)
T ss_pred HHHHHHHH
Confidence 88877554
No 482
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=42.51 E-value=8.2 Score=41.01 Aligned_cols=81 Identities=21% Similarity=0.480 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHHHHH
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL-TNTVRKLQRDVSKLEVFRKTLV 123 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sL-a~TvKKL~RDvaKLE~FKk~Lm 123 (333)
+.+|+.-...|..+-.++...+.+|..++..|= .+|..-.++...-..++..| ..++..|.-.|.+|+.+|+.-|
T Consensus 209 l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW----~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~l 284 (619)
T PF03999_consen 209 LEKLQELLQELEEEKEEREEKLQELREKIEELW----NRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNL 284 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhH
Confidence 445666666666666777777777877777665 45557777777776666655 4689999999999999999999
Q ss_pred hhcccc
Q 019982 124 QSLKDD 129 (333)
Q Consensus 124 qSLqeD 129 (333)
..|=++
T Consensus 285 k~~I~~ 290 (619)
T PF03999_consen 285 KEFIEK 290 (619)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 887443
No 483
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=42.42 E-value=2e+02 Score=23.99 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 019982 94 LSKENEALTNTVRKLQRD 111 (333)
Q Consensus 94 L~kE~~sLa~TvKKL~RD 111 (333)
+..+-+.|..+++-++|-
T Consensus 77 l~G~~~~l~~~l~~v~~~ 94 (106)
T PF10805_consen 77 LRGELKELSARLQGVSHQ 94 (106)
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 333334444444444433
No 484
>PF14282 FlxA: FlxA-like protein
Probab=42.36 E-value=1.3e+02 Score=25.12 Aligned_cols=42 Identities=19% Similarity=0.392 Sum_probs=32.8
Q ss_pred HHHHhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRS----QLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~----~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
.|..++..|..++..|.. --.+|...+..|+.++..|+.+|+
T Consensus 23 ~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 23 QLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIA 68 (106)
T ss_pred HHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777 224788889999999999998887
No 485
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=42.34 E-value=79 Score=34.32 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 82 DKLGQAQADKERLSKENEALTNTVRKL 108 (333)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (333)
+||..++.||+.|-+||..|-..+--|
T Consensus 309 ~rLq~ll~Ene~Lk~ENatLk~qL~~l 335 (655)
T KOG4343|consen 309 ARLQALLSENEQLKKENATLKRQLDEL 335 (655)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 677799999999999999876554443
No 486
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=42.30 E-value=1.3e+02 Score=25.41 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (333)
Q Consensus 49 EsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL 80 (333)
|-|+.-||.+|+|=+.+...|...++.+-..+
T Consensus 14 EEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 14 EEEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88899999999988888888887777765544
No 487
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.26 E-value=64 Score=36.54 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 019982 34 RKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-DKLGQAQA 89 (333)
Q Consensus 34 rkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~-~rL~~a~~ 89 (333)
-++|..++|.-....|.++..|.+++..=+..|.+|-+++.+|+.+.- .-|..|..
T Consensus 839 m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qadse~l~ka~~ 895 (970)
T KOG0946|consen 839 MGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADSETLSKALK 895 (970)
T ss_pred hhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcchHHHHHHH
Confidence 367778889999999999999999999999999999999999997665 44444443
No 488
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=42.16 E-value=23 Score=29.36 Aligned_cols=43 Identities=28% Similarity=0.452 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019982 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (333)
Q Consensus 84 L~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 126 (333)
|....++...|.+|++.|-..+..|+..+..++.-...|-+.|
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 3466677778889999999999999999988876666665555
No 489
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=42.13 E-value=2.5e+02 Score=27.80 Aligned_cols=90 Identities=16% Similarity=0.247 Sum_probs=62.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 36 ITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 36 Its~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
.----++-||...-+. .+=+..++|-+.+|.||.++-..|....+ ....-+..|..+|..|..-+--|+.+|+.|
T Consensus 70 ~~RrKLKNRVAAQtaR-DrKKaRm~eme~~i~dL~een~~L~~en~----~Lr~~n~~L~~~n~el~~~le~~~~~l~~~ 144 (292)
T KOG4005|consen 70 VQRRKLKNRVAAQTAR-DRKKARMEEMEYEIKDLTEENEILQNEND----SLRAINESLLAKNHELDSELELLRQELAEL 144 (292)
T ss_pred HHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 3334456666654443 34466678888899999888877776665 445567788888888888888888888877
Q ss_pred HHHHHHHHhhcccccCC
Q 019982 116 EVFRKTLVQSLKDDEDA 132 (333)
Q Consensus 116 E~FKk~LmqSLqeD~~~ 132 (333)
.- .+.|+.+=-+++.
T Consensus 145 ~~--~~~~~~~v~eee~ 159 (292)
T KOG4005|consen 145 KQ--QQQHNTRVIEEEN 159 (292)
T ss_pred HH--HHHHhhHHHhhhh
Confidence 53 4566666555544
No 490
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=41.94 E-value=2.6e+02 Score=30.40 Aligned_cols=83 Identities=22% Similarity=0.278 Sum_probs=52.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHH
Q 019982 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALT----NTVRKLQRDVSKL 115 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa----~TvKKL~RDvaKL 115 (333)
.-|.++|.|+..|++.+.+=...+..=.-.++.|...|. .-|..+.+++++++..-.+|- +.=-.|.|=+.||
T Consensus 347 ~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l 426 (570)
T COG4477 347 GSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKL 426 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888877777766666554445555555444 445577888877776655552 2334566666777
Q ss_pred HHHHHHHHhh
Q 019982 116 EVFRKTLVQS 125 (333)
Q Consensus 116 E~FKk~LmqS 125 (333)
.+.||-+-.|
T Consensus 427 ~eikR~mek~ 436 (570)
T COG4477 427 HEIKRYMEKS 436 (570)
T ss_pred HHHHHHHHHc
Confidence 7777766543
No 491
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.86 E-value=1.5e+02 Score=29.75 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=18.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHH
Q 019982 39 IAISTRVSDLESEHSALRSQLAEKDS 64 (333)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~laEKd~ 64 (333)
-+++++++.|+.|++++|+++.+-..
T Consensus 132 ~~~~~~~~~l~~~va~v~q~~~~qq~ 157 (300)
T KOG2629|consen 132 DKAAKSLNALMDEVAQVSQLLATQQS 157 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888887775433
No 492
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=41.81 E-value=2e+02 Score=23.72 Aligned_cols=87 Identities=18% Similarity=0.273 Sum_probs=62.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
..+..|-..|+..-..|+..+..=+..+.+-..+...+..... ..-..-..+..+|..+...|-.-+.+|..-|.++
T Consensus 28 ~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 28 EQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777888777777788777777766665554 3334455666777778888888888888888888
Q ss_pred HHHHHHHHhh
Q 019982 116 EVFRKTLVQS 125 (333)
Q Consensus 116 E~FKk~LmqS 125 (333)
..|+.=|.+=
T Consensus 108 ~~Y~~fL~~v 117 (126)
T PF13863_consen 108 KKYEEFLEKV 117 (126)
T ss_pred HHHHHHHHHh
Confidence 8888777653
No 493
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=41.81 E-value=3.3e+02 Score=30.39 Aligned_cols=35 Identities=37% Similarity=0.439 Sum_probs=19.0
Q ss_pred HHhccCH--HHHHHHHHHHHHHhhccccHHHHHHhhhhhc
Q 019982 276 VRNRLSY--EQFAIFLANVKELNAHKQTKEETLRKTDEVF 313 (333)
Q Consensus 276 ARsRLSY--EQFsaFLANIKELNAhkQTREETL~KAeeIF 313 (333)
.|+=||= ||-..+= +| |=|-|||-|-+|..-..=|
T Consensus 595 LKSLLSTKREQIaTLR-TV--LKANKqTAEvALanLKsKY 631 (717)
T PF09730_consen 595 LKSLLSTKREQIATLR-TV--LKANKQTAEVALANLKSKY 631 (717)
T ss_pred HHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHH
Confidence 3444442 4544332 23 3366788888887655433
No 494
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=41.80 E-value=2e+02 Score=23.73 Aligned_cols=53 Identities=13% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 64 SRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 64 ~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
++...|+.||-.+=..+. =.+....+.|..|.+|++.+...=..|.+...+|.
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk 59 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK 59 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
No 495
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=41.80 E-value=2.4e+02 Score=32.71 Aligned_cols=135 Identities=19% Similarity=0.252 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC------------CCCCCCCCCCCCCCCCCCCcccccc---CCCCCccCCccccccccCCCC---cc--
Q 019982 193 TSTPRLTPPGSP------------PSLSASVSPTKTPKPVSPRRHSISF---STSRGMFDDRSSILSSVHSSH---SS-- 252 (333)
Q Consensus 193 ~~tprltp~~sP------------~~~s~s~sP~~~s~~~sP~~~S~~~---s~t~~~~~~~~~~~~~~~ss~---~s-- 252 (333)
+++|..-|.-+- |-...++.-...-.+.++.++-|.+ +.++.-|++.-.+.++....- ++
T Consensus 26 ~~~~k~~Ps~s~~~~vNtsl~n~~p~~dnG~a~~p~~~~~~~ssy~g~~~~rs~tr~~~e~~~~~~ss~~~~~pd~st~~ 105 (1163)
T COG5602 26 QISPKYHPSMSRDHDVNTSLQNSEPWPDNGSARKPSYSPESMSSYGGPMDERSGTRRYYEDVEQILSSLAGDNPDPSTDH 105 (1163)
T ss_pred hcCCcCCcccccCCCcccccccCCCCCCCCcccccccCCCchhhcCCcchhccccccchhhccccchhcccCCCCCccch
Q ss_pred ---------CCCCCCCCCCCCCccchHHHHHHHHhccC--HHHHHHHHHHHHHHhhccccHHHHHHhhhhhcCCCChhHH
Q 019982 253 ---------ISSSESGSQTGKTRVDGKEFFRQVRNRLS--YEQFAIFLANVKELNAHKQTKEETLRKTDEVFGPENKDLY 321 (333)
Q Consensus 253 ---------~spp~~~s~~gr~rVDGKEFFRQARsRLS--YEQFsaFLANIKELNAhkQTREETL~KAeeIFG~~NkdLY 321 (333)
.+||.+.+...-.--|.+-|..+++-+++ .|=|+.||.-+|+|-.+.-.-.+.+..+-.||-. -++|.
T Consensus 106 ~~~snqn~~~~~p~~~~~r~Ldv~DAlsyLe~vK~~f~~rp~iYn~FLdiMkdFKsqaiDtpgVI~RVS~LFrg-YP~LI 184 (1163)
T COG5602 106 GSASNQNMERSPPPRIPYRPLDVSDALSYLEKVKEQFSNRPEIYNNFLDIMKDFKSQAIDTPGVIERVSVLFRG-YPHLI 184 (1163)
T ss_pred hhhhccccccCCCCCCCCCCCChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHcC-ChHHH
Q ss_pred HHHHHhh
Q 019982 322 TIFEGLI 328 (333)
Q Consensus 322 ~~FegLL 328 (333)
+-|-..|
T Consensus 185 egFNtFL 191 (1163)
T COG5602 185 EGFNTFL 191 (1163)
T ss_pred HHHhhhC
No 496
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.72 E-value=2.8e+02 Score=25.81 Aligned_cols=84 Identities=8% Similarity=0.160 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019982 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (333)
Q Consensus 44 RVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lm 123 (333)
+|..+|.++..|..+|..=-..+.++-+--..+-.+.. ....++.+-......-..+++++++...-+..+++++..|+
T Consensus 3 ~~~~~E~~~~~le~~l~kl~K~~~~~~d~g~~~~~a~~-~F~~~l~d~~~~~~gd~~i~~~L~kF~~~l~ei~~~~~~l~ 81 (200)
T cd07637 3 TIDEVETDVVEIEAKLDKLVKLCSGMIEAGKAYATTNK-LFVSGIRDLSQQCKKDEMISECLDKFGDSLQEMVNYHMILF 81 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhccc
Q 019982 124 QSLKD 128 (333)
Q Consensus 124 qSLqe 128 (333)
.-.+.
T Consensus 82 ~q~e~ 86 (200)
T cd07637 82 DQAQR 86 (200)
T ss_pred HHHHH
No 497
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=41.69 E-value=79 Score=26.92 Aligned_cols=41 Identities=24% Similarity=0.397 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
+..|+..|+..+..|..++.++.+.+..++..+..+....+
T Consensus 99 l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~ 139 (140)
T PRK03947 99 LDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEAA 139 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 498
>PRK10807 paraquat-inducible protein B; Provisional
Probab=41.66 E-value=2.4e+02 Score=30.09 Aligned_cols=77 Identities=14% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHH---------HHHH
Q 019982 31 DVARKITSIAISTRVSDLESEHSALRSQLAEKDSRI----------------AELQSQIESIYSSLS---------DKLG 85 (333)
Q Consensus 31 dvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i----------------~~Lq~rv~~le~aL~---------~rL~ 85 (333)
++..||-.+.+-.-+..|++-+..+++-+.+=+..+ .+|++-+.+++..|+ ..|.
T Consensus 424 ~il~kin~lple~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL~~l~~~l~~~~~~s~~~~~l~ 503 (547)
T PRK10807 424 EALDKINNLPLNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTLRELNRSMQGFQPGSPAYNKMV 503 (547)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019982 86 QAQADKERLSKENEALTNTVRK 107 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKK 107 (333)
.++++.+++.+|-+.|+.+++.
T Consensus 504 ~tl~~l~~~~r~lr~l~~~L~~ 525 (547)
T PRK10807 504 ADMQRLDQVLRELQPVLKTLNE 525 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
No 499
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=41.63 E-value=1.2e+02 Score=24.33 Aligned_cols=45 Identities=24% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019982 65 RIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 65 ~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (333)
+...|++++.....+|. =.--.|---.++|.+|||.+...+.+|+
T Consensus 23 E~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l~ 70 (70)
T PF08606_consen 23 ENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAELQ 70 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhcC
No 500
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=41.62 E-value=3e+02 Score=25.76 Aligned_cols=80 Identities=18% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 41 ISTRVSDLESEH-SALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 41 ~atRVs~LEsE~-~~LR~~laEKd~~i~~Lq~rv~~le~aL~----~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
|..|+..++.++ ..-+++-..-+..+..|++.+..||..|+ .|......=+..+...-+.+.+.|...--+ |+
T Consensus 10 i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~--~~ 87 (247)
T PF06705_consen 10 INERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISE--KQ 87 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q ss_pred HHHHHHH
Q 019982 116 EVFRKTL 122 (333)
Q Consensus 116 E~FKk~L 122 (333)
+.++..|
T Consensus 88 ~~~~~~l 94 (247)
T PF06705_consen 88 EQLQSRL 94 (247)
T ss_pred HHHHHHH
Done!