Query 019982
Match_columns 333
No_of_seqs 81 out of 83
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 10:00:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019982.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019982hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ld7_B Paired amphipathic heli 97.9 3.2E-05 1.1E-09 60.2 7.8 65 265-330 7-72 (75)
2 2cr7_A Paired amphipathic heli 97.3 0.00072 2.5E-08 52.9 8.0 65 265-330 9-75 (80)
3 2czy_A Paired amphipathic heli 97.0 0.0019 6.4E-08 50.1 6.8 62 268-330 6-69 (77)
4 3hnw_A Uncharacterized protein 96.7 0.02 6.7E-07 49.0 11.7 70 36-109 61-130 (138)
5 1c1g_A Tropomyosin; contractIl 96.2 0.1 3.6E-06 44.0 13.3 42 40-81 3-44 (284)
6 2dfs_A Myosin-5A; myosin-V, in 95.6 0.1 3.6E-06 57.0 13.3 73 43-122 984-1061(1080)
7 3u1c_A Tropomyosin alpha-1 cha 95.5 0.22 7.6E-06 40.2 11.6 77 40-116 20-99 (101)
8 3a7p_A Autophagy protein 16; c 95.4 0.14 4.7E-06 44.9 10.9 72 40-115 72-144 (152)
9 1e91_A Paired amphipathic heli 95.2 0.06 2.1E-06 42.4 7.2 64 265-329 6-81 (85)
10 1g1e_B SIN3A; four-helix bundl 95.0 0.04 1.4E-06 43.8 5.9 63 265-328 9-86 (89)
11 2dfs_A Myosin-5A; myosin-V, in 94.7 0.032 1.1E-06 61.0 5.8 73 44-116 922-997 (1080)
12 2v4h_A NF-kappa-B essential mo 94.7 0.35 1.2E-05 40.4 10.8 64 49-116 44-110 (110)
13 3u59_A Tropomyosin beta chain; 94.5 0.52 1.8E-05 37.8 11.1 77 40-116 20-99 (101)
14 2f05_A Paired amphipathic heli 93.9 0.16 5.4E-06 41.7 7.0 65 265-330 6-82 (105)
15 3bas_A Myosin heavy chain, str 93.4 0.99 3.4E-05 35.5 10.7 68 45-112 16-86 (89)
16 3m9b_A Proteasome-associated A 93.1 0.064 2.2E-06 50.3 3.9 69 42-115 23-94 (251)
17 3cvf_A Homer-3, homer protein 92.7 0.6 2.1E-05 36.8 8.4 56 46-105 2-57 (79)
18 3i00_A HIP-I, huntingtin-inter 92.4 0.8 2.7E-05 38.4 9.2 55 44-101 23-80 (120)
19 3oja_B Anopheles plasmodium-re 92.1 0.72 2.5E-05 45.3 10.1 41 89-129 544-584 (597)
20 2v71_A Nuclear distribution pr 92.1 2.3 7.7E-05 38.3 12.4 43 87-129 93-135 (189)
21 3a7o_A Autophagy protein 16; c 91.9 0.98 3.3E-05 35.3 8.5 61 44-108 12-72 (75)
22 2fxo_A Myosin heavy chain, car 91.8 4.8 0.00017 33.3 14.4 32 82-113 62-93 (129)
23 2fxo_A Myosin heavy chain, car 91.8 3.3 0.00011 34.3 12.5 72 45-116 43-124 (129)
24 2b9c_A Striated-muscle alpha t 91.3 2.6 8.9E-05 36.2 11.5 73 38-110 47-122 (147)
25 3na7_A HP0958; flagellar bioge 91.2 1.8 6.2E-05 39.3 11.1 78 25-104 88-172 (256)
26 3oja_B Anopheles plasmodium-re 91.1 2.1 7.2E-05 42.0 12.2 25 42-66 462-486 (597)
27 2akf_A Coronin-1A; coiled coil 91.1 0.26 9E-06 32.6 3.9 30 45-81 1-30 (32)
28 3hnw_A Uncharacterized protein 91.1 2 6.7E-05 36.6 10.5 53 65-117 76-131 (138)
29 1i84_S Smooth muscle myosin he 90.9 1.4 4.6E-05 48.3 11.6 77 44-120 858-944 (1184)
30 4emc_A Monopolin complex subun 90.4 0.69 2.3E-05 41.9 7.3 37 45-81 22-58 (190)
31 2efr_A General control protein 89.9 7 0.00024 34.1 13.1 74 38-111 65-141 (155)
32 2v66_B Nuclear distribution pr 89.4 6.6 0.00023 32.6 12.0 71 41-129 8-82 (111)
33 3vkg_A Dynein heavy chain, cyt 88.9 2.1 7.3E-05 51.9 11.9 86 43-128 2014-2134(3245)
34 3s9g_A Protein hexim1; cyclin 88.7 1.8 6.3E-05 35.6 8.0 51 39-100 40-90 (104)
35 2e7s_A RAB guanine nucleotide 88.5 0.77 2.6E-05 39.5 5.8 74 24-102 4-80 (135)
36 1i84_S Smooth muscle myosin he 88.4 3.2 0.00011 45.4 12.1 25 53-77 860-884 (1184)
37 1l8d_A DNA double-strand break 88.3 8.1 0.00028 30.4 11.6 32 86-117 68-99 (112)
38 1gd2_E Transcription factor PA 88.2 1 3.4E-05 34.6 5.8 44 60-114 25-68 (70)
39 3s4r_A Vimentin; alpha-helix, 87.9 8.8 0.0003 30.5 11.4 69 40-115 20-89 (93)
40 3o0z_A RHO-associated protein 87.5 8.1 0.00028 34.2 12.0 50 47-96 66-125 (168)
41 3na7_A HP0958; flagellar bioge 87.2 8.8 0.0003 34.7 12.5 29 98-126 145-173 (256)
42 3jsv_C NF-kappa-B essential mo 87.1 2.7 9.3E-05 34.2 8.0 66 48-117 21-89 (94)
43 2q6q_A Spindle POLE BODY compo 87.1 4.2 0.00014 31.6 8.6 57 53-113 6-62 (74)
44 1cii_A Colicin IA; bacteriocin 87.0 3.6 0.00012 42.1 10.5 64 50-113 349-415 (602)
45 3nmd_A CGMP dependent protein 86.7 2.4 8.3E-05 32.9 7.2 30 52-81 21-50 (72)
46 3a7p_A Autophagy protein 16; c 86.5 8.3 0.00028 33.7 11.3 30 86-115 100-129 (152)
47 2xnx_M M protein, M1-BC1; cell 86.5 0.52 1.8E-05 41.1 3.7 37 86-122 98-134 (146)
48 4fm3_A Uncharacterized hypothe 86.0 8.1 0.00028 31.5 10.3 87 26-112 5-94 (98)
49 1x79_B RAB GTPase binding effe 85.9 2.2 7.4E-05 35.6 7.0 89 44-133 7-103 (112)
50 2v71_A Nuclear distribution pr 85.8 10 0.00035 34.1 11.9 28 101-128 86-113 (189)
51 3tnu_B Keratin, type II cytosk 85.3 14 0.00049 30.3 11.9 66 41-110 41-117 (129)
52 3nmd_A CGMP dependent protein 84.8 3.4 0.00012 32.1 7.2 37 45-81 21-57 (72)
53 4etp_A Kinesin-like protein KA 84.1 2.6 8.8E-05 41.2 7.8 39 42-80 2-40 (403)
54 1go4_E MAD1 (mitotic arrest de 83.8 5.2 0.00018 32.8 8.3 23 86-108 72-94 (100)
55 3tnu_A Keratin, type I cytoske 83.3 18 0.00061 29.9 11.6 67 41-111 43-120 (131)
56 3tnu_A Keratin, type I cytoske 82.8 14 0.00047 30.6 10.7 77 46-122 34-117 (131)
57 3tnu_B Keratin, type II cytosk 82.7 19 0.00064 29.6 11.6 78 45-122 31-115 (129)
58 1ic2_A Tropomyosin alpha chain 82.4 6.3 0.00022 30.2 7.9 37 44-80 21-57 (81)
59 3qh9_A Liprin-beta-2; coiled-c 81.2 2.4 8.3E-05 33.6 5.2 34 41-74 31-78 (81)
60 4dci_A Uncharacterized protein 81.0 9.7 0.00033 33.1 9.4 64 62-129 27-103 (150)
61 1gk4_A Vimentin; intermediate 80.9 17 0.00059 28.0 10.7 72 41-122 6-77 (84)
62 3ol1_A Vimentin; structural ge 80.9 22 0.00074 29.1 11.2 31 48-78 18-48 (119)
63 1x4t_A Hypothetical protein LO 80.1 2 6.9E-05 34.8 4.5 49 61-109 29-79 (92)
64 2wt7_A Proto-oncogene protein 79.4 11 0.00039 27.6 8.1 33 86-118 27-59 (63)
65 4ghu_A TNF receptor-associated 79.2 2.4 8.1E-05 37.2 5.1 33 46-78 3-35 (198)
66 3mov_A Lamin-B1; LMNB1, B-type 78.8 7.7 0.00026 31.1 7.5 67 46-122 22-88 (95)
67 1ic2_A Tropomyosin alpha chain 78.8 20 0.00067 27.4 10.7 41 40-80 3-43 (81)
68 2xdj_A Uncharacterized protein 78.6 9.4 0.00032 30.0 7.8 9 42-50 5-13 (83)
69 3mq7_A Bone marrow stromal ant 77.5 11 0.00039 31.7 8.4 33 66-102 73-105 (121)
70 3he4_A Synzip6; heterodimeric 76.7 1.3 4.4E-05 32.3 2.1 29 86-114 28-56 (56)
71 2xdj_A Uncharacterized protein 76.6 21 0.00072 28.0 9.3 42 39-80 23-64 (83)
72 1m1j_B Fibrinogen beta chain; 76.2 37 0.0013 34.2 13.2 72 55-127 126-199 (464)
73 4aj5_1 SKA3, spindle and kinet 76.0 21 0.00073 29.3 9.4 69 46-118 16-96 (101)
74 2jee_A YIIU; FTSZ, septum, coi 75.8 27 0.00094 27.5 10.4 21 88-108 54-74 (81)
75 3q8t_A Beclin-1; autophagy, AT 75.8 28 0.00097 27.7 12.3 77 40-116 8-94 (96)
76 1x8y_A Lamin A/C; structural p 75.4 25 0.00085 27.3 9.4 64 42-112 9-72 (86)
77 4afl_A P29ING4, inhibitor of g 74.7 29 0.00099 27.3 10.8 75 42-116 10-100 (104)
78 3mq9_A Bone marrow stromal ant 74.1 62 0.0021 30.8 14.7 22 96-117 443-464 (471)
79 2v66_B Nuclear distribution pr 73.2 39 0.0013 28.0 11.0 56 44-99 36-101 (111)
80 1yf2_A Type I restriction-modi 73.2 5.2 0.00018 36.4 5.8 39 88-126 378-416 (425)
81 3m9b_A Proteasome-associated A 72.9 3.2 0.00011 38.9 4.4 36 82-117 54-89 (251)
82 3kqg_A Langerin, C-type lectin 72.5 5.6 0.00019 32.9 5.4 32 46-81 2-33 (182)
83 2jee_A YIIU; FTSZ, septum, coi 71.9 25 0.00086 27.7 8.6 30 87-116 32-61 (81)
84 3ghg_A Fibrinogen alpha chain; 71.9 22 0.00075 36.7 10.4 18 115-132 178-195 (562)
85 3cve_A Homer protein homolog 1 71.7 32 0.0011 26.5 10.1 46 55-104 5-50 (72)
86 3swy_A Cyclic nucleotide-gated 71.4 20 0.00067 25.6 7.2 43 68-117 2-44 (46)
87 1t2k_D Cyclic-AMP-dependent tr 71.3 26 0.0009 25.3 9.0 32 86-117 26-57 (61)
88 3m91_A Proteasome-associated A 70.8 16 0.00056 26.4 6.8 37 61-101 13-49 (51)
89 3s4r_A Vimentin; alpha-helix, 70.6 36 0.0012 26.9 9.4 59 46-110 33-91 (93)
90 1yf2_A Type I restriction-modi 70.0 6.7 0.00023 35.6 5.8 41 88-128 168-208 (425)
91 1l8d_A DNA double-strand break 69.5 38 0.0013 26.4 10.4 37 91-127 66-102 (112)
92 3e98_A GAF domain of unknown f 69.2 16 0.00055 33.4 8.1 95 15-131 33-134 (252)
93 2oqq_A Transcription factor HY 69.2 16 0.00056 25.7 6.2 17 61-77 14-30 (42)
94 1ci6_A Transcription factor AT 68.6 12 0.00041 27.6 5.9 33 84-116 25-57 (63)
95 3u06_A Protein claret segregat 68.2 13 0.00045 36.4 7.8 35 46-80 6-40 (412)
96 1jnm_A Proto-oncogene C-JUN; B 68.0 6.5 0.00022 28.7 4.2 31 86-116 26-56 (62)
97 2eqb_B RAB guanine nucleotide 67.8 25 0.00087 28.6 8.1 38 43-80 19-56 (97)
98 1gd2_E Transcription factor PA 67.8 9.3 0.00032 29.2 5.2 32 45-76 31-62 (70)
99 2gkw_A TNF receptor-associated 67.8 7.3 0.00025 33.6 5.3 33 46-78 3-35 (192)
100 1t2k_D Cyclic-AMP-dependent tr 67.6 19 0.00066 26.0 6.8 36 62-101 20-55 (61)
101 3u1c_A Tropomyosin alpha-1 cha 66.9 46 0.0016 26.4 10.9 30 86-115 34-63 (101)
102 1lwu_C Fibrinogen gamma chain; 66.8 15 0.00051 35.3 7.6 41 41-81 3-43 (323)
103 1hjb_A Ccaat/enhancer binding 66.5 24 0.00082 28.0 7.6 31 86-116 40-70 (87)
104 2lw1_A ABC transporter ATP-bin 66.1 30 0.001 26.7 8.0 40 41-80 27-72 (89)
105 3m0d_C TNF receptor-associated 66.1 21 0.00071 26.5 6.8 50 30-80 15-64 (65)
106 4fla_A Regulation of nuclear P 65.7 57 0.0019 28.0 10.4 60 47-114 83-142 (152)
107 2hy6_A General control protein 65.1 7.6 0.00026 26.3 3.7 28 83-110 2-29 (34)
108 1hjb_A Ccaat/enhancer binding 64.7 15 0.00053 29.1 6.1 28 34-61 34-61 (87)
109 3he5_A Synzip1; heterodimeric 64.3 14 0.00047 26.2 5.1 35 43-77 10-44 (49)
110 1ydx_A Type I restriction enzy 64.1 10 0.00035 35.0 5.8 41 87-127 353-393 (406)
111 3m0a_A TNF receptor-associated 63.9 31 0.001 25.1 7.3 44 34-78 18-61 (66)
112 3swf_A CGMP-gated cation chann 63.8 29 0.00099 27.1 7.3 50 67-123 3-52 (74)
113 3m48_A General control protein 63.8 8.3 0.00028 25.9 3.7 27 83-109 1-27 (33)
114 3efg_A Protein SLYX homolog; x 63.4 29 0.001 26.8 7.4 32 100-131 32-63 (78)
115 3bas_A Myosin heavy chain, str 63.3 51 0.0017 25.6 10.0 61 58-122 15-75 (89)
116 3vkg_A Dynein heavy chain, cyt 63.3 35 0.0012 41.8 11.4 9 122-130 2078-2086(3245)
117 3o0z_A RHO-associated protein 62.5 83 0.0028 27.8 13.1 37 45-81 43-79 (168)
118 4etp_A Kinesin-like protein KA 62.5 22 0.00075 34.6 8.1 27 52-78 5-31 (403)
119 3m91_A Proteasome-associated A 62.3 29 0.001 25.1 6.7 30 86-115 20-49 (51)
120 4b6x_A AVRRPS4, avirulence pro 60.8 35 0.0012 27.3 7.4 57 53-109 25-89 (90)
121 4emc_A Monopolin complex subun 60.6 23 0.0008 31.9 7.2 58 54-115 10-67 (190)
122 1ydx_A Type I restriction enzy 60.4 13 0.00044 34.3 5.8 40 88-127 166-205 (406)
123 1x8y_A Lamin A/C; structural p 60.2 42 0.0014 26.0 7.9 25 50-74 3-27 (86)
124 2ocy_A RAB guanine nucleotide 60.0 76 0.0026 27.6 10.2 71 27-102 19-92 (154)
125 3u59_A Tropomyosin beta chain; 59.9 62 0.0021 25.5 10.9 42 71-116 23-64 (101)
126 1uo4_A General control protein 59.6 11 0.00037 25.5 3.7 27 83-109 2-28 (34)
127 2wt7_A Proto-oncogene protein 59.6 35 0.0012 24.9 6.9 18 61-78 20-37 (63)
128 3c3g_A Alpha/beta peptide with 59.3 11 0.00037 25.3 3.6 27 83-109 1-27 (33)
129 2oxj_A Hybrid alpha/beta pepti 59.2 11 0.00037 25.5 3.6 27 83-109 2-28 (34)
130 3oja_A Leucine-rich immune mol 59.2 61 0.0021 31.1 10.5 26 40-65 364-389 (487)
131 1d7m_A Cortexillin I; coiled-c 59.1 71 0.0024 26.0 12.7 42 35-76 17-58 (101)
132 3c3f_A Alpha/beta peptide with 58.0 12 0.0004 25.3 3.6 27 83-109 2-28 (34)
133 2p22_A Suppressor protein STP2 57.7 38 0.0013 30.0 8.0 32 265-298 141-172 (174)
134 2ocy_A RAB guanine nucleotide 57.6 96 0.0033 27.0 13.8 50 29-79 38-87 (154)
135 2r2v_A GCN4 leucine zipper; co 57.6 12 0.00041 25.3 3.6 27 83-109 2-28 (34)
136 4dyl_A Tyrosine-protein kinase 57.5 50 0.0017 31.7 9.5 91 36-131 302-394 (406)
137 2eqb_B RAB guanine nucleotide 57.5 76 0.0026 25.8 11.6 52 48-103 10-61 (97)
138 1zxa_A CGMP-dependent protein 57.1 12 0.00041 28.6 4.1 27 51-77 26-52 (67)
139 3efg_A Protein SLYX homolog; x 56.9 40 0.0014 26.0 7.1 48 65-116 15-62 (78)
140 3swk_A Vimentin; cytoskeleton, 56.7 68 0.0023 24.9 8.5 17 98-114 44-60 (86)
141 2lw1_A ABC transporter ATP-bin 56.3 47 0.0016 25.6 7.5 26 56-81 21-46 (89)
142 3fpp_A Macrolide-specific effl 55.6 71 0.0024 28.8 9.8 16 45-60 71-86 (341)
143 1gu4_A CAAT/enhancer binding p 55.4 36 0.0012 26.4 6.7 32 86-117 40-71 (78)
144 1gu4_A CAAT/enhancer binding p 55.4 16 0.00054 28.4 4.6 27 34-60 34-60 (78)
145 3viq_B Mating-type switching p 55.4 27 0.00093 27.8 6.0 64 46-115 4-67 (85)
146 2xv5_A Lamin-A/C; structural p 55.2 58 0.002 24.9 7.7 52 64-122 5-56 (74)
147 2oqq_A Transcription factor HY 54.8 22 0.00075 25.1 4.7 37 66-106 5-41 (42)
148 3htk_A Structural maintenance 54.8 53 0.0018 23.1 7.6 12 61-72 23-34 (60)
149 2akf_A Coronin-1A; coiled coil 54.5 16 0.00055 24.1 3.8 25 93-117 3-27 (32)
150 4dk0_A Putative MACA; alpha-ha 54.4 45 0.0015 30.4 8.3 15 46-60 73-87 (369)
151 3k29_A Putative uncharacterize 54.0 1.2E+02 0.0041 26.9 13.5 99 22-120 2-130 (169)
152 2w6a_A ARF GTPase-activating p 54.0 52 0.0018 24.9 7.0 34 84-117 22-55 (63)
153 1lwu_C Fibrinogen gamma chain; 53.4 20 0.00067 34.5 5.9 39 42-80 18-56 (323)
154 1deq_A Fibrinogen (alpha chain 53.2 93 0.0032 30.9 10.6 17 39-55 63-79 (390)
155 1yke_B RNA polymerase II holoe 53.0 84 0.0029 26.9 9.2 39 71-113 92-130 (151)
156 3ibp_A Chromosome partition pr 53.0 79 0.0027 30.4 9.9 36 272-308 245-293 (302)
157 1kd8_A GABH AIV, GCN4 acid bas 52.9 15 0.0005 25.2 3.5 29 84-112 3-31 (36)
158 1wlq_A Geminin; coiled-coil; 2 52.5 71 0.0024 25.4 7.9 52 56-108 30-81 (83)
159 2w83_C C-JUN-amino-terminal ki 52.2 31 0.0011 27.1 5.8 28 88-115 43-70 (77)
160 1jnm_A Proto-oncogene C-JUN; B 51.8 26 0.00088 25.5 5.0 36 62-108 20-55 (62)
161 2b5u_A Colicin E3; high resolu 51.7 57 0.0019 33.6 9.1 53 42-95 313-365 (551)
162 1ca9_A TRAF2, protein (TNF rec 51.6 19 0.00066 30.6 5.0 33 45-77 5-37 (192)
163 1fzc_C Fibrin; blood coagulati 51.3 13 0.00045 35.6 4.3 40 41-80 9-48 (319)
164 1nfn_A Apolipoprotein E3; lipi 51.0 48 0.0017 29.0 7.6 31 98-128 134-165 (191)
165 3ghg_A Fibrinogen alpha chain; 50.9 75 0.0026 32.9 9.8 45 37-81 103-148 (562)
166 3u06_A Protein claret segregat 50.2 34 0.0012 33.5 7.1 46 86-131 14-59 (412)
167 2bni_A General control protein 50.0 20 0.00067 24.3 3.7 27 83-109 2-28 (34)
168 2wvr_A Geminin; DNA replicatio 50.0 96 0.0033 28.3 9.5 52 57-109 108-159 (209)
169 3rkg_A Magnesium transporter M 49.3 57 0.002 30.3 8.2 76 34-132 125-200 (261)
170 2wq1_A General control protein 49.1 20 0.00069 24.1 3.6 26 84-109 2-27 (33)
171 2qyw_A Vesicle transport throu 48.5 1E+02 0.0034 24.5 9.5 21 96-116 78-98 (102)
172 1kd8_B GABH BLL, GCN4 acid bas 48.5 34 0.0012 23.4 4.7 12 44-55 2-13 (36)
173 3k29_A Putative uncharacterize 48.1 1.5E+02 0.0051 26.3 11.9 81 47-127 75-160 (169)
174 2q12_A DIP13 alpha, DCC-intera 48.1 1.2E+02 0.004 26.9 9.8 86 42-128 20-109 (265)
175 2yy0_A C-MYC-binding protein; 47.8 37 0.0013 24.5 5.2 28 50-77 19-46 (53)
176 1dh3_A Transcription factor CR 47.2 76 0.0026 22.7 7.2 16 62-77 20-35 (55)
177 2q13_A DCC-interacting protein 46.8 71 0.0024 29.9 8.5 84 41-128 19-109 (385)
178 2xnx_M M protein, M1-BC1; cell 46.5 1.2E+02 0.0042 26.2 9.2 23 94-116 85-107 (146)
179 1ztm_A Fusion glycoprotein; fu 46.4 53 0.0018 33.4 7.9 77 30-116 102-180 (490)
180 1m1j_A Fibrinogen alpha subuni 46.4 2.2E+02 0.0076 29.0 12.3 26 56-81 92-117 (491)
181 3mud_A DNA repair protein XRCC 46.1 74 0.0025 28.3 8.0 51 51-108 122-172 (175)
182 4dac_A Computationally designe 46.1 14 0.00049 23.5 2.4 18 100-117 5-22 (28)
183 4h8s_A DCC-interacting protein 45.5 51 0.0018 31.1 7.4 21 41-61 42-62 (407)
184 2aze_B Transcription factor E2 45.5 30 0.001 28.1 5.0 34 41-74 4-37 (106)
185 3he5_B Synzip2; heterodimeric 44.8 68 0.0023 22.9 6.1 29 89-117 17-45 (52)
186 1kd8_A GABH AIV, GCN4 acid bas 44.5 44 0.0015 22.8 4.8 12 44-55 2-13 (36)
187 1fxk_C Protein (prefoldin); ar 44.5 1.2E+02 0.0041 24.3 9.2 37 92-128 91-127 (133)
188 3ghg_B Fibrinogen beta chain; 44.2 1.7E+02 0.0056 29.7 11.0 87 41-127 93-194 (461)
189 1gqe_A Release factor 2, RF2; 43.8 2.3E+02 0.0077 27.7 11.7 87 31-117 13-115 (365)
190 1fmh_A General control protein 43.8 30 0.001 22.8 3.8 20 59-78 10-29 (33)
191 1dh3_A Transcription factor CR 43.7 74 0.0025 22.8 6.3 28 85-112 25-52 (55)
192 1m1j_B Fibrinogen beta chain; 43.5 2.5E+02 0.0086 28.2 12.3 10 243-252 405-414 (464)
193 1ci6_A Transcription factor AT 43.5 80 0.0027 23.1 6.6 36 62-101 21-56 (63)
194 1gk6_A Vimentin; intermediate 43.2 55 0.0019 23.7 5.6 39 68-110 4-42 (59)
195 3thf_A Protein shroom; coiled- 43.1 1.5E+02 0.005 26.8 9.5 55 66-121 72-126 (190)
196 3gp4_A Transcriptional regulat 42.5 1.4E+02 0.0049 24.5 9.1 13 27-39 43-55 (142)
197 3oa7_A Head morphogenesis prot 42.4 48 0.0016 30.3 6.2 55 61-119 27-81 (206)
198 3oja_A Leucine-rich immune mol 42.4 2.3E+02 0.008 27.0 12.0 54 55-108 415-468 (487)
199 2dgc_A Protein (GCN4); basic d 42.3 35 0.0012 25.2 4.5 17 61-77 27-43 (63)
200 1gk6_A Vimentin; intermediate 42.2 95 0.0033 22.4 7.1 40 42-81 6-45 (59)
201 4b4t_K 26S protease regulatory 42.1 38 0.0013 33.3 6.0 41 66-117 44-84 (428)
202 2yy0_A C-MYC-binding protein; 42.1 19 0.00065 26.0 2.9 30 45-74 21-50 (53)
203 2lyc_A Spindle and kinetochore 41.8 11 0.00037 32.1 1.8 48 275-325 21-68 (130)
204 2avr_X Adhesion A; antiparalle 41.7 1.6E+02 0.0053 24.8 11.2 23 40-62 6-28 (119)
205 1t6f_A Geminin; coiled-coil, c 41.5 43 0.0015 22.9 4.4 26 51-76 8-33 (37)
206 2ke4_A CDC42-interacting prote 41.5 1.2E+02 0.0041 24.3 7.9 23 94-116 67-89 (98)
207 4h22_A Leucine-rich repeat fli 41.4 1.2E+02 0.0042 24.8 8.0 43 69-115 35-77 (103)
208 3rrk_A V-type ATPase 116 kDa s 41.3 1.1E+02 0.0038 28.2 8.8 53 64-120 226-279 (357)
209 2no2_A HIP-I, huntingtin-inter 40.6 1.4E+02 0.0049 24.1 13.6 18 59-76 24-41 (107)
210 2cly_A ATP synthase B chain, m 40.3 2.1E+02 0.0072 25.9 10.8 73 48-120 82-166 (214)
211 3c9i_A Tail needle protein GP2 40.0 2.3E+02 0.0078 26.2 10.6 95 19-115 28-145 (242)
212 1zhc_A Hypothetical protein HP 40.0 43 0.0015 25.5 4.8 59 55-114 8-69 (76)
213 1s94_A S-syntaxin; three helix 39.7 1.2E+02 0.0041 25.6 8.1 30 93-122 78-108 (180)
214 2dq0_A Seryl-tRNA synthetase; 39.6 1.5E+02 0.005 29.3 9.8 41 89-129 69-109 (455)
215 3mov_A Lamin-B1; LMNB1, B-type 39.5 60 0.002 25.8 5.8 29 94-122 49-77 (95)
216 4e61_A Protein BIM1; EB1-like 39.5 1.6E+02 0.0054 24.2 9.4 44 46-89 7-53 (106)
217 2dq0_A Seryl-tRNA synthetase; 39.4 96 0.0033 30.6 8.5 33 99-131 72-104 (455)
218 1m1j_C Fibrinogen gamma chain; 39.4 2.2E+02 0.0074 28.1 10.9 31 41-71 36-66 (409)
219 2wt7_B Transcription factor MA 39.4 81 0.0028 25.2 6.5 36 64-103 48-83 (90)
220 3d5a_X RF1, peptide chain rele 39.3 1.6E+02 0.0056 28.6 9.9 82 44-125 4-99 (354)
221 4h22_A Leucine-rich repeat fli 39.0 1.6E+02 0.0055 24.1 8.8 24 51-74 31-54 (103)
222 1ik9_A DNA repair protein XRCC 38.8 2.2E+02 0.0074 25.6 11.9 73 45-130 134-206 (213)
223 3q8t_A Beclin-1; autophagy, AT 38.7 1.4E+02 0.0049 23.5 11.7 25 91-115 27-51 (96)
224 3qne_A Seryl-tRNA synthetase, 38.7 1.5E+02 0.0051 29.9 9.8 40 89-128 71-110 (485)
225 1ez3_A Syntaxin-1A; three heli 38.7 1.1E+02 0.0037 24.0 7.3 30 94-123 48-78 (127)
226 1zme_C Proline utilization tra 38.7 11 0.00039 26.8 1.3 22 40-61 48-69 (70)
227 1kd8_B GABH BLL, GCN4 acid bas 38.4 46 0.0016 22.7 4.1 28 83-110 2-29 (36)
228 1wle_A Seryl-tRNA synthetase; 38.2 1.1E+02 0.0036 30.9 8.7 40 90-129 117-156 (501)
229 2ve7_A Kinetochore protein HEC 38.2 62 0.0021 30.4 6.6 17 64-80 185-201 (315)
230 3etw_A Adhesin A; antiparallel 38.1 1.8E+02 0.006 24.3 12.2 20 39-58 5-24 (119)
231 2jrf_A Tubulin polymerization- 38.1 23 0.00078 31.7 3.4 35 273-307 59-97 (184)
232 2no2_A HIP-I, huntingtin-inter 38.0 1.6E+02 0.0055 23.8 13.5 88 29-124 16-103 (107)
233 3m48_A General control protein 38.0 43 0.0015 22.5 3.9 12 44-55 1-12 (33)
234 3mtu_E Head morphogenesis prot 37.9 1.4E+02 0.0049 23.3 7.8 45 61-108 27-74 (77)
235 1wt6_A Myotonin-protein kinase 37.5 1.5E+02 0.0052 23.4 9.1 55 45-107 16-70 (81)
236 4adz_A CSOR; transcription, co 37.5 1.8E+02 0.006 24.9 8.7 53 38-91 51-111 (136)
237 1ykh_B RNA polymerase II holoe 37.5 1.3E+02 0.0045 25.0 7.9 78 28-113 53-130 (132)
238 3swk_A Vimentin; cytoskeleton, 37.4 58 0.002 25.3 5.3 9 48-56 19-27 (86)
239 2vrs_A Sigma-C capsid protein; 37.1 40 0.0014 30.9 4.9 28 89-116 11-38 (211)
240 1fxk_C Protein (prefoldin); ar 37.1 76 0.0026 25.5 6.2 37 41-77 93-129 (133)
241 2w6b_A RHO guanine nucleotide 36.9 1.3E+02 0.0043 22.3 6.9 40 87-126 15-54 (56)
242 1m1j_C Fibrinogen gamma chain; 36.8 2.6E+02 0.0091 27.5 11.1 10 243-252 333-342 (409)
243 2dgc_A Protein (GCN4); basic d 36.7 51 0.0017 24.3 4.6 31 82-112 30-60 (63)
244 1nkp_B MAX protein, MYC proto- 36.6 46 0.0016 25.1 4.5 59 16-76 22-80 (83)
245 1pul_A Hypothetical protein C3 36.3 33 0.0011 28.9 3.9 30 278-307 79-110 (125)
246 1wlo_A SUFE protein; structura 36.0 20 0.00067 30.2 2.5 46 11-61 87-132 (136)
247 3v1a_A Computational design, M 35.9 47 0.0016 23.9 4.1 29 270-298 14-42 (48)
248 3okg_A Restriction endonucleas 35.6 56 0.0019 29.6 5.8 7 265-271 348-354 (412)
249 3qwe_A GMIP, GEM-interacting p 35.6 1.8E+02 0.0062 27.3 9.3 64 59-124 172-235 (279)
250 3okg_A Restriction endonucleas 35.6 56 0.0019 29.6 5.8 39 88-126 365-407 (412)
251 1ni7_A ER75, hypothetical prot 35.4 7 0.00024 33.9 -0.3 50 11-64 100-149 (155)
252 1no4_A Late, head morphogenesi 35.3 1.7E+02 0.0058 23.3 8.0 50 60-113 22-71 (97)
253 1ez3_A Syntaxin-1A; three heli 35.0 1.6E+02 0.0055 23.0 8.1 20 41-60 10-29 (127)
254 1ytz_T Troponin T; muscle, THI 34.9 59 0.002 26.6 5.2 35 42-76 55-89 (107)
255 1s21_A ORF2; predominantly bet 34.8 24 0.00082 32.2 3.0 47 208-290 8-56 (206)
256 1wle_A Seryl-tRNA synthetase; 34.6 2.8E+02 0.0095 27.9 11.1 36 97-132 117-152 (501)
257 2zxx_A Geminin; coiled-coil, c 34.2 92 0.0031 24.4 5.9 20 61-80 31-50 (79)
258 1f5n_A Interferon-induced guan 33.9 1.2E+02 0.004 31.1 8.4 22 59-80 482-503 (592)
259 1uii_A Geminin; human, DNA rep 33.9 79 0.0027 25.1 5.5 20 86-105 43-62 (83)
260 2aze_A Transcription factor DP 33.8 1.3E+02 0.0045 26.2 7.5 35 43-77 5-39 (155)
261 1t6f_A Geminin; coiled-coil, c 33.4 93 0.0032 21.3 5.0 17 85-101 3-19 (37)
262 1pcf_A P15, transcriptional co 33.2 26 0.00088 26.5 2.5 19 279-297 43-61 (66)
263 1joc_A EEA1, early endosomal a 32.7 1.3E+02 0.0043 24.6 6.9 25 40-64 8-32 (125)
264 2rr9_C Putative uncharacterize 32.3 1E+02 0.0034 21.9 5.2 10 27-36 4-13 (46)
265 3bbp_D GRIP and coiled-coil do 32.2 31 0.0011 26.7 2.9 32 82-113 36-67 (71)
266 1ik9_A DNA repair protein XRCC 32.2 2.8E+02 0.0095 24.8 13.8 88 24-112 117-209 (213)
267 2yko_A LINE-1 ORF1P; RNA-bindi 32.1 70 0.0024 29.6 5.7 36 42-77 5-40 (233)
268 2c5k_T Syntaxin TLG1, T-snare 32.0 1.9E+02 0.0064 22.8 7.7 22 60-81 39-60 (95)
269 2dq3_A Seryl-tRNA synthetase; 31.6 86 0.0029 30.6 6.7 68 55-122 4-84 (425)
270 3m0a_A TNF receptor-associated 31.6 1.4E+02 0.0049 21.4 9.4 59 48-110 3-61 (66)
271 1wlm_A Protein CGI-38; structu 31.3 27 0.00091 30.2 2.6 30 278-307 75-104 (151)
272 2xv5_A Lamin-A/C; structural p 31.3 1.7E+02 0.0059 22.2 8.0 27 48-74 3-29 (74)
273 3ghg_C Fibrinogen gamma chain; 31.1 1.3E+02 0.0045 29.8 7.9 32 41-72 36-67 (411)
274 1wlq_A Geminin; coiled-coil; 2 31.1 83 0.0028 25.0 5.2 25 86-110 35-59 (83)
275 3jsv_C NF-kappa-B essential mo 31.0 2E+02 0.0067 23.3 7.5 10 62-71 21-30 (94)
276 1lq7_A Alpha3W; three helix bu 30.0 47 0.0016 24.8 3.4 15 43-57 2-16 (67)
277 2zdi_C Prefoldin subunit alpha 29.9 58 0.002 27.1 4.5 38 41-78 103-140 (151)
278 1bg1_A Protein (transcription 29.9 1.7E+02 0.0059 30.4 8.8 38 42-79 12-49 (596)
279 3sjb_C Golgi to ER traffic pro 29.9 1.8E+02 0.006 23.5 7.0 19 91-109 69-87 (93)
280 3s9g_A Protein hexim1; cyclin 29.6 2.3E+02 0.008 23.2 8.7 41 82-122 44-84 (104)
281 1j1d_B Troponin T, TNT; THIN f 29.2 63 0.0021 26.4 4.4 7 71-77 56-62 (106)
282 2oxj_A Hybrid alpha/beta pepti 29.1 96 0.0033 20.9 4.5 16 86-101 12-27 (34)
283 2wq1_A General control protein 29.1 80 0.0027 21.2 4.0 11 44-54 1-11 (33)
284 1d7m_A Cortexillin I; coiled-c 28.9 2.3E+02 0.008 23.0 8.2 14 40-53 5-18 (101)
285 1hx1_B BAG-1, BAG-family molec 28.9 78 0.0027 26.5 5.0 77 39-128 21-97 (114)
286 3plt_A Sphingolipid long chain 28.8 3.5E+02 0.012 24.9 11.1 41 41-81 67-107 (234)
287 3mq7_A Bone marrow stromal ant 28.8 2.6E+02 0.009 23.5 11.5 28 91-121 73-100 (121)
288 1x79_B RAB GTPase binding effe 28.7 2.5E+02 0.0085 23.2 12.5 55 51-112 46-100 (112)
289 2pms_C Pneumococcal surface pr 28.5 79 0.0027 26.8 5.0 25 92-116 64-88 (125)
290 2ve7_C Kinetochore protein NUF 28.3 34 0.0012 31.4 3.0 28 86-113 152-179 (250)
291 3ra3_B P2F; coiled coil domain 28.1 47 0.0016 21.2 2.7 24 53-76 3-26 (28)
292 1gqe_A Release factor 2, RF2; 28.0 2.5E+02 0.0085 27.4 9.1 34 43-81 9-42 (365)
293 1j1d_C Troponin I, TNI; THIN f 28.0 1E+02 0.0035 26.1 5.7 38 41-78 70-107 (133)
294 3cl3_D NF-kappa-B essential mo 27.9 23 0.00078 30.3 1.6 11 92-102 76-86 (130)
295 2wuj_A Septum site-determining 27.8 49 0.0017 23.8 3.2 25 86-110 31-55 (57)
296 1urq_A M-tomosyn isoform; tran 27.6 1.8E+02 0.0063 21.3 8.0 39 41-79 9-47 (63)
297 3qh9_A Liprin-beta-2; coiled-c 27.1 2.3E+02 0.0079 22.3 8.0 33 65-97 27-62 (81)
298 3tul_A Cell invasion protein S 27.0 1.8E+02 0.0061 25.5 7.1 21 61-81 73-93 (158)
299 3a1q_C Ubiquitin interaction m 26.8 1.4E+02 0.0049 21.0 5.2 19 27-54 7-25 (45)
300 1zxa_A CGMP-dependent protein 26.6 1.1E+02 0.0038 23.2 5.1 28 53-80 14-41 (67)
301 3mq9_A Bone marrow stromal ant 26.4 4.2E+02 0.014 25.1 13.6 18 64-81 397-414 (471)
302 3tq2_A KE1; parallel three hel 26.4 1.4E+02 0.0048 19.9 4.9 31 45-75 3-33 (36)
303 1z0k_B FYVE-finger-containing 26.1 78 0.0027 24.3 4.2 29 270-298 33-61 (69)
304 3t97_B Nuclear pore complex pr 26.1 2.1E+02 0.0073 21.6 8.1 47 42-92 9-55 (65)
305 3lss_A Seryl-tRNA synthetase; 26.0 1.1E+02 0.0036 30.9 6.3 27 102-128 109-136 (484)
306 3iox_A AGI/II, PA; alpha helix 25.9 5.4E+02 0.019 26.2 12.1 74 49-122 8-82 (497)
307 3m0d_C TNF receptor-associated 25.9 2E+02 0.0067 21.1 9.0 17 62-78 4-20 (65)
308 2y7c_A Type-1 restriction enzy 25.8 1.1E+02 0.0036 28.2 5.8 21 106-126 184-204 (464)
309 3ter_A Mammalian stromal inter 25.6 89 0.0031 26.8 4.9 29 82-110 59-87 (136)
310 2efr_A General control protein 25.5 3.3E+02 0.011 23.5 12.1 58 43-104 42-113 (155)
311 1vcs_A Vesicle transport throu 25.5 2.5E+02 0.0084 22.1 7.5 54 60-117 34-88 (102)
312 2qyw_A Vesicle transport throu 25.5 2.5E+02 0.0085 22.1 9.1 76 41-122 13-94 (102)
313 2i1j_A Moesin; FERM, coiled-co 25.4 39 0.0013 34.4 3.0 18 297-314 533-550 (575)
314 4e61_A Protein BIM1; EB1-like 25.3 1.6E+02 0.0056 24.2 6.2 27 53-79 7-33 (106)
315 1gmj_A ATPase inhibitor; coile 25.3 2.5E+02 0.0087 22.2 9.1 15 37-51 18-32 (84)
316 3g0m_A Cysteine desulfuration 25.2 19 0.00064 30.6 0.6 46 11-60 93-138 (141)
317 1uo4_A General control protein 25.1 1E+02 0.0034 20.8 4.0 12 44-55 2-13 (34)
318 2dnx_A Syntaxin-12; snare, HAB 25.0 2.8E+02 0.0096 22.6 12.9 86 30-116 13-118 (130)
319 3kpe_A Fusion glycoprotein F0; 25.0 2E+02 0.0068 20.8 6.8 35 47-81 1-35 (51)
320 3cl3_D NF-kappa-B essential mo 25.0 1.4E+02 0.0049 25.4 5.9 66 40-113 34-100 (130)
321 2ke4_A CDC42-interacting prote 24.9 2.5E+02 0.0086 22.4 7.2 31 92-122 58-88 (98)
322 3fpp_A Macrolide-specific effl 24.8 2.5E+02 0.0087 25.1 8.1 10 50-59 69-78 (341)
323 2v0o_A FCHO2, FCH domain only 24.7 3.4E+02 0.012 23.4 13.8 33 98-130 176-208 (276)
324 2yo3_A General control protein 24.7 1.3E+02 0.0044 28.4 6.2 39 43-81 216-254 (268)
325 2k48_A Nucleoprotein; viral pr 24.6 3E+02 0.01 22.7 7.8 25 66-90 37-64 (107)
326 2xus_A Breast cancer metastasi 24.4 1.1E+02 0.0038 22.0 4.4 29 44-81 14-42 (49)
327 3rmi_A Chorismate mutase prote 24.4 2.1E+02 0.0071 23.0 6.7 19 51-69 13-31 (114)
328 1zbt_A RF-1, peptide chain rel 24.3 1.1E+02 0.0037 30.1 5.8 24 100-123 91-115 (371)
329 2vkl_A RV0948C/MT0975; helical 24.2 1.6E+02 0.0053 22.8 5.7 16 66-81 14-29 (90)
330 1r73_A TM1492, 50S ribosomal p 24.1 1.1E+02 0.0039 22.6 4.7 47 66-120 11-58 (66)
331 3fx0_A NF-kappa-B essential mo 23.9 52 0.0018 26.8 2.9 55 49-107 37-94 (96)
332 2j5u_A MREC protein; bacterial 23.8 39 0.0013 30.8 2.5 26 86-111 23-48 (255)
333 1ses_A Seryl-tRNA synthetase; 23.7 3.2E+02 0.011 26.5 9.1 41 89-129 64-104 (421)
334 2zvf_A Alanyl-tRNA synthetase; 23.6 99 0.0034 25.5 4.8 31 86-116 29-59 (171)
335 2d4y_A HAP1, flagellar HOOK-as 23.4 3E+02 0.01 26.6 8.8 20 39-58 74-93 (463)
336 1nkp_A C-MYC, MYC proto-oncoge 23.2 2E+02 0.0068 22.2 6.1 19 90-108 67-85 (88)
337 3lss_A Seryl-tRNA synthetase; 23.2 5.8E+02 0.02 25.6 11.6 88 42-129 36-144 (484)
338 1uii_A Geminin; human, DNA rep 23.1 2.5E+02 0.0084 22.2 6.6 37 58-105 40-76 (83)
339 1avy_A Fibritin, gpwac M; bact 23.1 1.4E+02 0.0049 23.1 5.1 34 43-76 8-41 (74)
340 3frt_A Charged multivesicular 23.0 1.1E+02 0.0037 27.7 5.3 19 104-122 55-73 (218)
341 1yzm_A FYVE-finger-containing 22.8 1.1E+02 0.0037 22.2 4.2 29 270-298 15-43 (51)
342 2er8_A Regulatory protein Leu3 22.8 76 0.0026 22.6 3.4 18 64-81 49-66 (72)
343 4ad8_A DNA repair protein RECN 22.8 2E+02 0.0068 28.0 7.5 8 25-32 162-169 (517)
344 2ve7_A Kinetochore protein HEC 22.8 1.4E+02 0.0049 28.0 6.2 29 70-102 184-212 (315)
345 2p22_A Suppressor protein STP2 22.5 4E+02 0.014 23.4 9.9 34 86-119 60-93 (174)
346 2y7c_A Type-1 restriction enzy 22.4 1.3E+02 0.0045 27.5 5.8 20 107-126 398-417 (464)
347 2oto_A M protein; helical coil 22.3 3.4E+02 0.012 22.5 12.5 39 40-78 26-64 (155)
348 2fcw_A Alpha-2-macroglobulin r 22.3 3.3E+02 0.011 22.5 11.6 31 94-124 72-103 (109)
349 1y1u_A Signal transducer and a 22.2 5.3E+02 0.018 26.6 10.7 46 36-81 5-50 (585)
350 3c3f_A Alpha/beta peptide with 22.1 1.3E+02 0.0044 20.3 4.0 6 45-50 3-8 (34)
351 2zxx_A Geminin; coiled-coil, c 22.0 2.9E+02 0.0098 21.6 7.9 23 86-108 31-53 (79)
352 2d8d_A Aroag, phospho-2-dehydr 22.0 1.9E+02 0.0064 21.8 5.7 16 66-81 5-20 (90)
353 2lf0_A Uncharacterized protein 21.8 2.2E+02 0.0074 24.1 6.4 51 65-115 11-70 (123)
354 3iz5_c 60S ribosomal protein L 21.7 2.2E+02 0.0075 23.8 6.5 47 66-120 16-63 (124)
355 1gk4_A Vimentin; intermediate 21.6 2.7E+02 0.0092 21.1 10.2 31 91-121 35-65 (84)
356 2l2l_A Transcriptional repress 21.5 1.7E+02 0.0057 20.6 4.7 30 59-88 3-34 (43)
357 4gfh_A DNA topoisomerase 2; to 21.4 82 0.0028 35.1 4.8 43 87-129 1125-1173(1177)
358 4hpq_C ATG17, KLTH0D15642P; au 21.3 6E+02 0.02 25.0 10.9 73 52-128 237-323 (413)
359 1nlw_A MAD protein, MAX dimeri 21.2 1.9E+02 0.0066 22.0 5.6 39 59-108 42-80 (80)
360 3viq_A SWI5-dependent recombin 21.1 1.1E+02 0.0039 25.3 4.6 8 70-77 13-20 (122)
361 1ybz_A Chorismate mutase; cons 21.0 2E+02 0.0067 22.4 5.7 16 66-81 19-34 (91)
362 3a5t_A Transcription factor MA 20.9 9.2 0.00032 31.5 -2.1 21 10-30 4-24 (107)
363 1f5n_A Interferon-induced guan 20.9 5E+02 0.017 26.5 10.2 14 102-115 566-579 (592)
364 3teq_A Stromal interaction mol 20.8 2.5E+02 0.0087 22.8 6.5 28 82-109 28-55 (101)
365 2e7s_A RAB guanine nucleotide 20.7 3.9E+02 0.013 22.7 8.9 95 29-128 26-124 (135)
366 3rrr_B Fusion glycoprotein F0; 20.7 5.1E+02 0.017 25.5 9.7 62 44-115 10-71 (374)
367 2oa5_A Hypothetical protein BQ 20.5 2.5E+02 0.0085 23.3 6.4 20 41-60 13-32 (110)
368 3nr7_A DNA-binding protein H-N 20.5 3.1E+02 0.011 21.4 7.0 37 33-69 14-50 (86)
369 2zdi_C Prefoldin subunit alpha 20.4 3.6E+02 0.012 22.1 8.0 38 92-129 101-138 (151)
370 3q4f_C DNA repair protein XRCC 20.3 1.3E+02 0.0044 27.1 5.0 22 82-103 161-182 (186)
371 1ecm_A Endo-oxabicyclic transi 20.3 2E+02 0.0069 22.4 5.7 18 52-69 7-24 (109)
372 4eba_G RNA15, KLLA0F09383P; HA 20.3 96 0.0033 27.4 4.2 54 273-332 47-100 (174)
373 3swf_A CGMP-gated cation chann 20.1 2.6E+02 0.0089 21.6 6.1 39 42-80 6-48 (74)
374 2l5g_B Putative uncharacterize 20.1 2.3E+02 0.008 19.8 5.3 20 59-78 18-37 (42)
375 2wg5_A General control protein 20.0 96 0.0033 24.9 3.8 19 91-109 16-34 (109)
No 1
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=97.92 E-value=3.2e-05 Score=60.23 Aligned_cols=65 Identities=22% Similarity=0.343 Sum_probs=61.3
Q ss_pred CccchHHHHHHHHhcc-CHHHHHHHHHHHHHHhhccccHHHHHHhhhhhcCCCChhHHHHHHHhhcc
Q 019982 265 TRVDGKEFFRQVRNRL-SYEQFAIFLANVKELNAHKQTKEETLRKTDEVFGPENKDLYTIFEGLITR 330 (333)
Q Consensus 265 ~rVDGKEFFRQARsRL-SYEQFsaFLANIKELNAhkQTREETL~KAeeIFG~~NkdLY~~FegLL~R 330 (333)
...|.-.||.+||.|| +-+-|..||--++-+|.+.-+|.|.+..+..+|| .|+||+..|..+|..
T Consensus 7 ~~~de~~Ff~kVK~~l~~~~~Y~eFLk~lnlf~q~~Id~~eLv~~V~~~lg-~~pdL~~~Fk~Fl~~ 72 (75)
T 2ld7_B 7 GVGTESLFFDKVRKALRSAEAYENFLRCLVIFNQEVISRAELVQLVSPFLG-KFPELFNWFKNFLGY 72 (75)
T ss_dssp TSSHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHT-TCHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcCHHHHHHHHHHHHc-cCHHHHHHHHHHcCC
Confidence 6679999999999999 8899999999999999999999999999999999 599999999999864
No 2
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=97.35 E-value=0.00072 Score=52.89 Aligned_cols=65 Identities=22% Similarity=0.387 Sum_probs=60.2
Q ss_pred CccchHHHHHHHHhccC--HHHHHHHHHHHHHHhhccccHHHHHHhhhhhcCCCChhHHHHHHHhhcc
Q 019982 265 TRVDGKEFFRQVRNRLS--YEQFAIFLANVKELNAHKQTKEETLRKTDEVFGPENKDLYTIFEGLITR 330 (333)
Q Consensus 265 ~rVDGKEFFRQARsRLS--YEQFsaFLANIKELNAhkQTREETL~KAeeIFG~~NkdLY~~FegLL~R 330 (333)
+--|...|.+++|.|+. .+-|..||.-+|.+-+++.+..+....+.++|. +|+||...|...|-.
T Consensus 9 ~~~dA~~yl~~VK~rF~~~p~~Y~~FL~im~~fk~~~~~~~~v~~rV~~Lf~-~hpdLi~gFn~FLP~ 75 (80)
T 2cr7_A 9 HVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFH-EHPDLIVGFNAFLPS 75 (80)
T ss_dssp CSCCSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHGG-GCHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc-CCHHHHHHHHHHCcC
Confidence 66789999999999997 699999999999999999999999999999999 689999999988753
No 3
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=96.97 E-value=0.0019 Score=50.13 Aligned_cols=62 Identities=23% Similarity=0.417 Sum_probs=57.4
Q ss_pred chHHHHHHHHhccC--HHHHHHHHHHHHHHhhccccHHHHHHhhhhhcCCCChhHHHHHHHhhcc
Q 019982 268 DGKEFFRQVRNRLS--YEQFAIFLANVKELNAHKQTKEETLRKTDEVFGPENKDLYTIFEGLITR 330 (333)
Q Consensus 268 DGKEFFRQARsRLS--YEQFsaFLANIKELNAhkQTREETL~KAeeIFG~~NkdLY~~FegLL~R 330 (333)
|...|.+++|.|+. .+-|..||.-+|.+-+++.+..+..+.+.++|. +|+||...|...|-.
T Consensus 6 dA~~yl~~VK~~F~~~p~~Y~~FL~im~~~k~~~~~~~~v~~rv~~Lf~-~hpdLi~gFn~FLP~ 69 (77)
T 2czy_A 6 DALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFH-EHPDLIVGFNAFLPL 69 (77)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTT-TCHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHc-CCHHHHHHHHHHCCC
Confidence 77899999999996 689999999999999999999999999999999 589999999887754
No 4
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=96.71 E-value=0.02 Score=49.02 Aligned_cols=70 Identities=14% Similarity=0.215 Sum_probs=59.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019982 36 ITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 36 Its~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (333)
++++=|+.-.-++..++..|++++.+++..+++|...+.+++..+. .+..++.+|.+|++.|...+++|.
T Consensus 61 LaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e----~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 61 MMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAE----SSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666688888899999999999999999999999999888776554 888888888888888887777775
No 5
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.23 E-value=0.1 Score=43.99 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=21.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
+|..+|..|+.++..+..++.+-...+..|+.++..++..+.
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 44 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELV 44 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555444444443
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.61 E-value=0.1 Score=56.97 Aligned_cols=73 Identities=19% Similarity=0.304 Sum_probs=36.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-----H
Q 019982 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE-----V 117 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE-----~ 117 (333)
.+|..||.|+..|+.++.+-.....+|++++.++...|+.++. .|.+||..|-.++-.|+.++.+.+ .
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~-------~L~~e~~~L~qq~~~l~~~~~~~~~~~~~~ 1056 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS-------ELKEQNTLLKTEKEELNRRIHDQAKEITET 1056 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555544443333 444455555555555555444443 3
Q ss_pred HHHHH
Q 019982 118 FRKTL 122 (333)
Q Consensus 118 FKk~L 122 (333)
+|..+
T Consensus 1057 ~~~~~ 1061 (1080)
T 2dfs_A 1057 MEKKL 1061 (1080)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 7
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.48 E-value=0.22 Score=40.17 Aligned_cols=77 Identities=16% Similarity=0.212 Sum_probs=57.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
.+.-|+..+|.++..+.+....++..|..|+.|+..+|..|- .+|..+.+....-.+-...--..|.-|||-|.=||
T Consensus 20 ~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 20 NALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345688889999999999999999999999999999999886 55555544433333333334458888998887665
No 8
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.14 Score=44.92 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=51.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN-TVRKLQRDVSKL 115 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~-TvKKL~RDvaKL 115 (333)
.+.+-...|+.++..|...+.||...+..|++-+..|..++. .+++...+|.+||+.|.. -+++-++|..+|
T Consensus 72 ~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n----~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~M 144 (152)
T 3a7p_A 72 ILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENN----VLQQKLSDLKKEHSQLVARWLKKTEKETEAM 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666677777777777777766555 889999999999988875 466777777665
No 9
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=95.18 E-value=0.06 Score=42.39 Aligned_cols=64 Identities=16% Similarity=0.352 Sum_probs=56.0
Q ss_pred CccchHHHHHHHHhcc--CHHHHHHHHHHHHHHhhcc----------ccHHHHHHhhhhhcCCCChhHHHHHHHhhc
Q 019982 265 TRVDGKEFFRQVRNRL--SYEQFAIFLANVKELNAHK----------QTKEETLRKTDEVFGPENKDLYTIFEGLIT 329 (333)
Q Consensus 265 ~rVDGKEFFRQARsRL--SYEQFsaFLANIKELNAhk----------QTREETL~KAeeIFG~~NkdLY~~FegLL~ 329 (333)
+--|...|.+++|+|+ -.+-|.+||.-++.+=+++ .|..|......++|.. |.||...|...|-
T Consensus 6 ~~~~A~~yv~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d~~~~~~~~~s~~eV~~~V~~Lf~~-hpDLl~~F~~FLP 81 (85)
T 1e91_A 6 EFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRG-QEDLLSEFGQFLP 81 (85)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTCSSSCCCSSCCCHHHHHHHHHHHTSS-CHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHccccccccccccCcHHHHHHHHHHHHcc-CHHHHHHHHHHCc
Confidence 3447889999999999 4699999999999998877 4789999999999996 8999999988774
No 10
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=95.05 E-value=0.04 Score=43.78 Aligned_cols=63 Identities=14% Similarity=0.369 Sum_probs=54.0
Q ss_pred CccchHHHHHHHHhcc--CHHHHHHHHHHHHHHhhcccc-------------HHHHHHhhhhhcCCCChhHHHHHHHhh
Q 019982 265 TRVDGKEFFRQVRNRL--SYEQFAIFLANVKELNAHKQT-------------KEETLRKTDEVFGPENKDLYTIFEGLI 328 (333)
Q Consensus 265 ~rVDGKEFFRQARsRL--SYEQFsaFLANIKELNAhkQT-------------REETL~KAeeIFG~~NkdLY~~FegLL 328 (333)
+--|...|.+.+|+|. -.|-|.+||.-.+.+-.++.+ .+|......++|. +|.||...|...|
T Consensus 9 ~~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~~~~~~~~~~~~~~~~~~~~V~~~V~~LF~-~h~DLl~~F~~FL 86 (89)
T 1g1e_B 9 EFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFK-NQEDLLSEFGQFL 86 (89)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCSCCHHHHHHHHHHHTT-TCHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHc-cCHHHHHHHHHHC
Confidence 5568999999999999 588999999999988765433 4899999999999 6899999998776
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.68 E-value=0.032 Score=60.96 Aligned_cols=73 Identities=22% Similarity=0.282 Sum_probs=27.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 44 RVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
...+||.++..|.++|.++.+...+|++++..++..+. ..|...+++.+++.+|+..+.+.|+.|..++++|+
T Consensus 922 ~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~ 997 (1080)
T 2dfs_A 922 LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR 997 (1080)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888888888877776666655 56666666666666666666666666666665543
No 12
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=94.66 E-value=0.35 Score=40.38 Aligned_cols=64 Identities=19% Similarity=0.339 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 49 ESEHSALRSQLAEKDS---RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 49 EsE~~~LR~~laEKd~---~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
..++..|++.++.++. .|.-|+.++.-... -...=..+-++|..|+..|...+..|+|.+.+|+
T Consensus 44 q~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~----DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l~ 110 (110)
T 2v4h_A 44 QELIDKLKEEAEQHKIVMETVPVLKAQADIYKA----DFQAERHAREKLVEKKEYLQEQLEQLQREFNKLK 110 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHccchhhHHHHHhHHHHHHHHHHHHHHHHHhcC
Confidence 3455555555555444 33334433333332 2234456668999999999999999999998873
No 13
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.46 E-value=0.52 Score=37.75 Aligned_cols=77 Identities=16% Similarity=0.238 Sum_probs=57.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
...-|+-.+|.++..+......++..|..|+.|+..++..|- .+|..+.+....-.+....--..|.-|||-+.=||
T Consensus 20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345678888999999999999999999999999999998886 56665554444444444444567888888776554
No 14
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=93.87 E-value=0.16 Score=41.72 Aligned_cols=65 Identities=15% Similarity=0.345 Sum_probs=55.5
Q ss_pred CccchHHHHHHHHhcc--CHHHHHHHHHHHHHHhhccc----------cHHHHHHhhhhhcCCCChhHHHHHHHhhcc
Q 019982 265 TRVDGKEFFRQVRNRL--SYEQFAIFLANVKELNAHKQ----------TKEETLRKTDEVFGPENKDLYTIFEGLITR 330 (333)
Q Consensus 265 ~rVDGKEFFRQARsRL--SYEQFsaFLANIKELNAhkQ----------TREETL~KAeeIFG~~NkdLY~~FegLL~R 330 (333)
+--|...|.+.+|+|. -++-|..||.-.+.+=+++. |-.|......++|.. |.||...|...|-.
T Consensus 6 ~~~dA~~YvnkVK~rF~d~p~vY~~FL~IL~~yk~~~~d~~g~~~~~~s~~eV~~~V~~LF~~-hpDLl~eFn~FLP~ 82 (105)
T 2f05_A 6 EFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRG-QEDLLSEFGQFLPE 82 (105)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTT-CHHHHHHHHHHSCG
T ss_pred cHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccccccccccccCcHHHHHHHHHHHHcc-CHHHHHHHHHHCCC
Confidence 3447889999999999 56999999999999987763 568999999999986 89999999887743
No 15
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=93.42 E-value=0.99 Score=35.55 Aligned_cols=68 Identities=21% Similarity=0.273 Sum_probs=58.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (333)
+..++.|+..|+.++..-.....+|+.++..|...-. ..|..+.+...+|.+.+..|-..++.|+-.|
T Consensus 16 m~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999888888999999888877655 4488999999999999999999999987655
No 16
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=93.09 E-value=0.064 Score=50.33 Aligned_cols=69 Identities=17% Similarity=0.303 Sum_probs=27.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEK---DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEK---d~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
+..|..|+.|+..||.+|.+- .+.... ++|+.+|+.++. .....|++|..+...|-..+.+|..+|.+|
T Consensus 23 ~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~-~~~l~eL~~ql~----~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 23 AAELEQLRREAAVLREQLENAVGSHAPTRS-ARDIHQLEARID----SLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp -----------------------------C-CHHHHHHHHHHH----HHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhcccCcccchh-hhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777888999999888655 444333 455555555554 555566667777777777777777777776
No 17
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=92.68 E-value=0.6 Score=36.82 Aligned_cols=56 Identities=25% Similarity=0.395 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTV 105 (333)
Q Consensus 46 s~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~Tv 105 (333)
+.||+|+..+-++|.+-.....+|+++|..|+..|. .+..++..+..|-..|..+.
T Consensus 2 ~~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le----~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 2 SHMAAEREETQQKVQDLETRNAELEHQLRAMERSLE----EARAERERARAEVGRAAQLL 57 (79)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999998777 88888888877777666553
No 18
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=92.36 E-value=0.8 Score=38.42 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=38.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 019982 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEAL 101 (333)
Q Consensus 44 RVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sL 101 (333)
-|..|=.|+..| ..|-.+.|.+|+.+|..||.+|. .-...|..|+..|-.|...|
T Consensus 23 eie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 23 EISGLKAQLENM---KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 45889999999999999999998 22345666777776666543
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.12 E-value=0.72 Score=45.28 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019982 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (333)
Q Consensus 89 ~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (333)
++.++|.+.-+.--..++.|.++++++..=.|+|++-+++.
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444444444444577777788877766666776666543
No 20
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.07 E-value=2.3 Score=38.32 Aligned_cols=43 Identities=26% Similarity=0.307 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019982 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (333)
Q Consensus 87 a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (333)
..++..+|.+++..|...+.+|--.-+-||.=.|.+.-||.|-
T Consensus 93 Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~ 135 (189)
T 2v71_A 93 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDF 135 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH
Confidence 3444455555666666666666666666666666666666554
No 21
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=91.90 E-value=0.98 Score=35.27 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=43.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (333)
Q Consensus 44 RVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (333)
--+.|+.-+..||..|.+||..|..|++.+.---.. .....||..-|.=||+-|..-..+|
T Consensus 12 ~~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd----~ErLNDEiislNIENNlL~~rl~~l 72 (75)
T 3a7o_A 12 HDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKN----TERLNDELISGTIENNVLQQKLSDL 72 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----HHHhhHHHHHhHHHHHHHHHHHHHH
Confidence 344566678999999999999999999886532222 2356677778888888776655444
No 22
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.83 E-value=4.8 Score=33.33 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019982 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (333)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (333)
+-+..+.+...+|.+.+..|-..++-|..++.
T Consensus 62 ~~l~e~EE~~~~L~~~k~eLe~~l~el~~rle 93 (129)
T 2fxo_A 62 DNLADAEERCDQLIKNKIQLEAKVKEMNKRLE 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 23
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.81 E-value=3.3 Score=34.31 Aligned_cols=72 Identities=21% Similarity=0.359 Sum_probs=45.5
Q ss_pred hhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019982 45 VSDLESEHSALRSQL-------AEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (333)
Q Consensus 45 Vs~LEsE~~~LR~~l-------aEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (333)
..+|+.|...|..+| ++.+.....|..+-..||..|. .||..-.+.+..|..++..|-..+..|..|+.-
T Consensus 43 ~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 43 MVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554444 4444455555555556666665 677777777777777777777777777777766
Q ss_pred HH
Q 019982 115 LE 116 (333)
Q Consensus 115 LE 116 (333)
||
T Consensus 123 ~e 124 (129)
T 2fxo_A 123 LE 124 (129)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 24
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=91.27 E-value=2.6 Score=36.23 Aligned_cols=73 Identities=15% Similarity=0.213 Sum_probs=66.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019982 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQR 110 (333)
Q Consensus 38 s~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (333)
+++.--|+..||.++...+....+.|+...+...|+.-++..|. .|+..+...+..|..|-..+.+.+|.|.-
T Consensus 47 ~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 47 AQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 56777899999999999999999999999999999999999999 89999999999999999999999998754
No 25
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.21 E-value=1.8 Score=39.29 Aligned_cols=78 Identities=12% Similarity=0.171 Sum_probs=50.3
Q ss_pred ChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 019982 25 DPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKE 97 (333)
Q Consensus 25 DPyEQLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~-------~rL~~a~~e~~kL~kE 97 (333)
++-|-=+|-..|. .+..|++.||.++-.+-.++.++...+.++++++..++..|. ..+.....+...|.++
T Consensus 88 ~~kE~~aL~kEie--~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~ 165 (256)
T 3na7_A 88 SERELRSLNIEED--IAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKK 165 (256)
T ss_dssp SSSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666776 345788888888888888888888888888888887777775 2333333344444444
Q ss_pred HHHHHHH
Q 019982 98 NEALTNT 104 (333)
Q Consensus 98 ~~sLa~T 104 (333)
++.|+..
T Consensus 166 r~~l~~~ 172 (256)
T 3na7_A 166 KEDLVEK 172 (256)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 4444443
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.14 E-value=2.1 Score=41.99 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=11.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRI 66 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i 66 (333)
...|.+|+.|.....+.+......|
T Consensus 462 ~~~i~~l~~~~~~~~~~l~~~~~~i 486 (597)
T 3oja_B 462 RAEVQQLTNEQIQQEQLLQGLHAEI 486 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555444444444333333
No 27
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=91.12 E-value=0.26 Score=32.61 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=24.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
||+||.|++.|- ..+.+||+|+..||...|
T Consensus 1 isrlee~~r~l~-------~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 1 VSRLEEDVRNLN-------AIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp CCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 578998888875 456789999998887776
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=91.11 E-value=2 Score=36.59 Aligned_cols=53 Identities=28% Similarity=0.317 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 65 RIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 65 ~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
.+..|+..+..++..+. ..|..+..+.+.+.+|+..|-.-+..|.+.+.|||+
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444 555688999999999999999999999999999985
No 29
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=90.87 E-value=1.4 Score=48.28 Aligned_cols=77 Identities=10% Similarity=0.235 Sum_probs=46.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019982 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (333)
Q Consensus 44 RVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~----------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (333)
.+..|+.|+..|+.+|..-+..+.+|++++..|+.++. ..+..+.++..+|..++..|...++.|..++.
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~ele 937 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIE 937 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677777777777666666666666666665544 34444555666666666666666666666665
Q ss_pred HHHHHHH
Q 019982 114 KLEVFRK 120 (333)
Q Consensus 114 KLE~FKk 120 (333)
.++.-..
T Consensus 938 e~ee~l~ 944 (1184)
T 1i84_S 938 EEEERSQ 944 (1184)
T ss_dssp HHHHC--
T ss_pred HHHHHHH
Confidence 5544333
No 30
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=90.36 E-value=0.69 Score=41.85 Aligned_cols=37 Identities=32% Similarity=0.487 Sum_probs=34.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
|++|-.|...|+++|..|+..|..|++++.+++....
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6789999999999999999999999999999997664
No 31
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=89.91 E-value=7 Score=34.06 Aligned_cols=74 Identities=20% Similarity=0.272 Sum_probs=51.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019982 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (333)
Q Consensus 38 s~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RD 111 (333)
..-++-|...+|.++..|..+|.|-+.....-+..|..|+..+. ++|.........+..|-+..-+.+.-+.-+
T Consensus 65 eekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~ 141 (155)
T 2efr_A 65 AEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSK 141 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34556788889999999999999888777777777777777666 666666666666666666544444443333
No 32
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=89.44 E-value=6.6 Score=32.62 Aligned_cols=71 Identities=24% Similarity=0.321 Sum_probs=42.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKD----SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd----~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
+..++.+|+.|+..+|.++..-. ..|..|| +|..+|..+|+.|..-+++|--.-+-||
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq------------------~El~~lr~~~~~l~~~iReLEq~NDDLE 69 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLE------------------DDLSQTRAIKEQLHKYVRELEQANDDLE 69 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 55677777777777777766432 1233333 4445556666666666666666666666
Q ss_pred HHHHHHHhhcccc
Q 019982 117 VFRKTLVQSLKDD 129 (333)
Q Consensus 117 ~FKk~LmqSLqeD 129 (333)
.=.|...-||.|-
T Consensus 70 R~~R~t~~SLeD~ 82 (111)
T 2v66_B 70 RAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHH
Confidence 6666666666553
No 33
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.92 E-value=2.1 Score=51.90 Aligned_cols=86 Identities=19% Similarity=0.267 Sum_probs=60.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------------DKLGQAQADKERLSKENEALTNTV 105 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~-----------------~rL~~a~~e~~kL~kE~~sLa~Tv 105 (333)
.++..+|.+....+++|.++...+++|+++++.|+..+. .||.+|..=...|..|+..-..++
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~ 2093 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQS 2093 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHH
Confidence 466677777777777777777777777777777766654 455555555667788888888888
Q ss_pred HHHhhhHHHH------------------HHHHHHHHhhccc
Q 019982 106 RKLQRDVSKL------------------EVFRKTLVQSLKD 128 (333)
Q Consensus 106 KKL~RDvaKL------------------E~FKk~LmqSLqe 128 (333)
+.|......| +.||+.||+....
T Consensus 2094 ~~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~l~~~W~~ 2134 (3245)
T 3vkg_A 2094 ENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDLMRKWMI 2134 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 8887776664 4578777765443
No 34
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=88.73 E-value=1.8 Score=35.64 Aligned_cols=51 Identities=27% Similarity=0.466 Sum_probs=34.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEA 100 (333)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~s 100 (333)
|-+-.|+++||.|..+||..-.+=+..|.+|+..|. ....||..|..||..
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~eve-----------rL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELD-----------RLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH-----------HHHHHHHHHHHHHHh
Confidence 345678999999999999885554444555444443 455677777777654
No 35
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.45 E-value=0.77 Score=39.51 Aligned_cols=74 Identities=22% Similarity=0.353 Sum_probs=44.2
Q ss_pred CChhhhHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 24 SDPFEQLDVARKITSIAISTRVSDLES---EHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEA 100 (333)
Q Consensus 24 sDPyEQLdvArkIts~A~atRVs~LEs---E~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~s 100 (333)
+|=.++|.++|++.+.. ..||..||. +...|...+..++..+..|+.++..-. .+-..|+.++.++..|-..
T Consensus 4 s~LEd~L~~~r~~l~~~-~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~----~~R~~aE~~~~~ie~ElE~ 78 (135)
T 2e7s_A 4 GSLEEQLNKSLKTIASQ-KAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKEN----ELRTKAEEEADKLNKEVED 78 (135)
T ss_dssp --CCSTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTT----SHHHHHHHTTHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 34568899999976554 888888887 566666666667777777776544222 2223444444444444444
Q ss_pred HH
Q 019982 101 LT 102 (333)
Q Consensus 101 La 102 (333)
|.
T Consensus 79 LT 80 (135)
T 2e7s_A 79 LT 80 (135)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 36
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=88.42 E-value=3.2 Score=45.37 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 53 SALRSQLAEKDSRIAELQSQIESIY 77 (333)
Q Consensus 53 ~~LR~~laEKd~~i~~Lq~rv~~le 77 (333)
..|+.++.+-...+..+++.+..++
T Consensus 860 ~~L~~eL~el~~~L~~le~~l~ele 884 (1184)
T 1i84_S 860 QAKDEELQRTKERQQKAEAELKELE 884 (1184)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 37
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=88.28 E-value=8.1 Score=30.44 Aligned_cols=32 Identities=13% Similarity=0.289 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
....+...|.++-..|...+..|.+.+.+|+.
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~ 99 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKSELERELRRIDM 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445555555444444443
No 38
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=88.25 E-value=1 Score=34.65 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019982 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (333)
Q Consensus 60 aEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (333)
.-|+.+|.+|+.+|..|+.... .|..||..|-..|..|.-.+..
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~-----------~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHS-----------STTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999988876443 4666777777666666655543
No 39
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=87.90 E-value=8.8 Score=30.46 Aligned_cols=69 Identities=16% Similarity=0.297 Sum_probs=39.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQ-IESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~r-v~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
.|.-||-.||.+-..|-.++.+ |+.+ .+.+...+..-|..+......+..||..|...+..|..|+..|
T Consensus 20 syIdKVR~LEqqN~~Le~~i~~-------l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 20 NLIDKVRFLEQQNKILLAELEQ-------LKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667999999998888776643 2221 2223333333333444445555566666666666666655443
No 40
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=87.47 E-value=8.1 Score=34.24 Aligned_cols=50 Identities=18% Similarity=0.371 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHH-HH------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 019982 47 DLESEHSALRSQLA-EK------DSRIAELQSQIESIYSSLS---DKLGQAQADKERLSK 96 (333)
Q Consensus 47 ~LEsE~~~LR~~la-EK------d~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~k 96 (333)
.||.|+..|..+|. || ...|.+|+.|+..|+..|- .++..+..|+.+|++
T Consensus 66 ~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~E 125 (168)
T 3o0z_A 66 QTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQD 125 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665 44 4567788888888888776 444444444444443
No 41
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=87.20 E-value=8.8 Score=34.73 Aligned_cols=29 Identities=14% Similarity=0.222 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019982 98 NEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (333)
Q Consensus 98 ~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 126 (333)
+..+...+..+...+++|..=+..|...|
T Consensus 145 ~~~~~~~~~e~~~e~~~l~~~r~~l~~~i 173 (256)
T 3na7_A 145 ESLVENEVKNIKETQQIIFKKKEDLVEKT 173 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444444555555555555555555555
No 42
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=87.13 E-value=2.7 Score=34.17 Aligned_cols=66 Identities=20% Similarity=0.351 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 48 LESEHSALRSQLAEKD---SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 48 LEsE~~~LR~~laEKd---~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
-..++..|++.++.+. ..|.-|+.++.-....+. .=..+-++|..|+..|...+..|.|.+.+|..
T Consensus 21 kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~----aERadREkl~~eKe~L~~ql~~lq~q~~~L~~ 89 (94)
T 3jsv_C 21 KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ----AERHAREKLVEKKEYLQEQLEQLQREFNKLKV 89 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTTSHHHHHHHHHHHTTC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666555 555566666655555554 45566789999999999999999999999853
No 43
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=87.07 E-value=4.2 Score=31.58 Aligned_cols=57 Identities=26% Similarity=0.347 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019982 53 SALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (333)
Q Consensus 53 ~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (333)
..|-.+|.+|+++|..|.-=|.+|- +||-.-.+-|-||..+...+..-+..|++|+.
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR----~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~ 62 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLR----SKLEKYVDITKKLEDQNLNLQIKISDLEKKLS 62 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcc
Confidence 4688899999999998887666555 56668889999999999998888888888764
No 44
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=86.99 E-value=3.6 Score=42.08 Aligned_cols=64 Identities=23% Similarity=0.385 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019982 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (333)
Q Consensus 50 sE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (333)
+|-.+|||.+.++...|..++.-|.++...+. ....+|.+..+.+.+|+..+-+.+-.++.+++
T Consensus 349 ae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiA 415 (602)
T 1cii_A 349 AEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIA 415 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 57789999999999999999999999998888 77889999999999999999888777776654
No 45
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=86.73 E-value=2.4 Score=32.94 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 52 ~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
+..|...|.+|++.|...++++..||..|+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ 50 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELD 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555554443
No 46
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=86.50 E-value=8.3 Score=33.74 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
...||..-|.=+.+.|-..+++|..+-.+|
T Consensus 100 ~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 100 RLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777777777766554
No 47
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=86.50 E-value=0.52 Score=41.06 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L 122 (333)
....+..||..|+.-+-+.-+.|.||+.-...-||+|
T Consensus 98 ~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKql 134 (146)
T 2xnx_M 98 QLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQV 134 (146)
T ss_dssp HHHHHHHHHGGGTTTC---------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666776666666666777777777766666655
No 48
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=86.04 E-value=8.1 Score=31.51 Aligned_cols=87 Identities=13% Similarity=0.246 Sum_probs=60.3
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 26 PFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAEL---QSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (333)
Q Consensus 26 PyEQLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~L---q~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa 102 (333)
|-|||.++..-+..|.+..++....|...-|.+|..-...+.+= +.|.-.=+..+-+||..+.-...|=.+..+.|-
T Consensus 5 P~eql~~te~Ai~~A~~aga~~~apEl~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArLAeAka~~~Ka~~~~~el~ 84 (98)
T 4fm3_A 5 PLEQMRLTEQALEQAKAVGATDDVAELKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARLAESKVLTQKSKDQLGELD 84 (98)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999888888887655444321 111111111122777788777777777777777
Q ss_pred HHHHHHhhhH
Q 019982 103 NTVRKLQRDV 112 (333)
Q Consensus 103 ~TvKKL~RDv 112 (333)
..|..|...+
T Consensus 85 ~~I~~LrqEl 94 (98)
T 4fm3_A 85 KSLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7776665543
No 49
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=85.94 E-value=2.2 Score=35.64 Aligned_cols=89 Identities=21% Similarity=0.240 Sum_probs=34.6
Q ss_pred hhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHH
Q 019982 44 RVSDLESEHSALRSQLA----EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKE-NEALTNTVRKLQRDVSKLEVF 118 (333)
Q Consensus 44 RVs~LEsE~~~LR~~la----EKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE-~~sLa~TvKKL~RDvaKLE~F 118 (333)
-|.+|..+...|+.+|. +|+.+...++++.+.--...+ .|..-.+..+++.++ +.....+....+..+++|--=
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~-~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~ 85 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQIS-ALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQS 85 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666654 344444444433333332222 222222222222222 334444455555556666555
Q ss_pred HHHH---HhhcccccCCC
Q 019982 119 RKTL---VQSLKDDEDAS 133 (333)
Q Consensus 119 Kk~L---mqSLqeD~~~~ 133 (333)
++.| +.-||.||+.-
T Consensus 86 Re~V~~eL~rLQ~eNd~L 103 (112)
T 1x79_B 86 REQVSEELVRLQKDNDSL 103 (112)
T ss_dssp HHHHHTC-----------
T ss_pred HHHHHHHHHHHHhhccch
Confidence 5555 35566666654
No 50
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=85.76 E-value=10 Score=34.07 Aligned_cols=28 Identities=18% Similarity=0.320 Sum_probs=20.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019982 101 LTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (333)
Q Consensus 101 La~TvKKL~RDvaKLE~FKk~LmqSLqe 128 (333)
...++.+|+++++.|..-+.+|..-|.+
T Consensus 86 ~~~~~~~Lq~el~~l~~~~~~l~~~ire 113 (189)
T 2v71_A 86 SYKQVSVLEDDLSQTRAIKEQLHKYVRE 113 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455888888888888888887776643
No 51
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.29 E-value=14 Score=30.32 Aligned_cols=66 Identities=23% Similarity=0.342 Sum_probs=35.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRI-----------AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i-----------~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (333)
+...|+.|+.|+..|+.+-+-=...| .+++.++..||.+|+ .+.++.+....|-..|-+.=-+|-
T Consensus 41 lrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~----~~r~e~~~ql~EYq~LlnvKl~Ld 116 (129)
T 3tnu_B 41 MNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQ----KAKQDMARLLREYQELMNTKLALD 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777766665544333333 344444555555554 555666666666666655433443
Q ss_pred h
Q 019982 110 R 110 (333)
Q Consensus 110 R 110 (333)
-
T Consensus 117 ~ 117 (129)
T 3tnu_B 117 V 117 (129)
T ss_dssp H
T ss_pred H
Confidence 3
No 52
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=84.83 E-value=3.4 Score=32.10 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=32.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
|-.|+..+.+-.++|..||..|.+|+.++...|..++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~ 57 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQ 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888889999999999999999999997665
No 53
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=84.11 E-value=2.6 Score=41.20 Aligned_cols=39 Identities=15% Similarity=0.371 Sum_probs=26.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL 80 (333)
++.+..|+.|+..|++++.+.++.|++++.++..++..|
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 40 (403)
T 4etp_A 2 ASKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEIL 40 (403)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777788887777777777777777766665444
No 54
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=83.84 E-value=5.2 Score=32.75 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019982 86 QAQADKERLSKENEALTNTVRKL 108 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL 108 (333)
++.++.++|+.|...|-..|++|
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666665555555444
No 55
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.33 E-value=18 Score=29.86 Aligned_cols=67 Identities=22% Similarity=0.330 Sum_probs=37.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSR-----------IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~-----------i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (333)
+-..|..|+.|+..|+.+-+-=+.. +.+++.++..||.+|+ .+.++.+....|-..|-+.=-+|-
T Consensus 43 lrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~----~~r~em~~ql~EYq~Ll~vKl~Ld 118 (131)
T 3tnu_A 43 LRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLA----QLRCEMEQQNQEYKILLDVKTRLE 118 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777766544433333 3344455555555555 566666666666666665433444
Q ss_pred hh
Q 019982 110 RD 111 (333)
Q Consensus 110 RD 111 (333)
-.
T Consensus 119 ~E 120 (131)
T 3tnu_A 119 QE 120 (131)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 56
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.78 E-value=14 Score=30.58 Aligned_cols=77 Identities=19% Similarity=0.179 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 019982 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DK----LGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (333)
Q Consensus 46 s~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~r----L~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~F 118 (333)
..-..|+..||..+..-...|..|+.+...||.+|. .+ +..+......|-.|...+-..+-...++...|=..
T Consensus 34 ~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~v 113 (131)
T 3tnu_A 34 QSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDV 113 (131)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567778888887777777778777778887776 22 33333333444455555555555555555555555
Q ss_pred HHHH
Q 019982 119 RKTL 122 (333)
Q Consensus 119 Kk~L 122 (333)
|-.|
T Consensus 114 Kl~L 117 (131)
T 3tnu_A 114 KTRL 117 (131)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 57
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.71 E-value=19 Score=29.62 Aligned_cols=78 Identities=14% Similarity=0.251 Sum_probs=47.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DK----LGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~r----L~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
+..-..|+..||..+..-...|..|+.+...||.+|. .+ +..+......|-.|...+-..+-...++...|=.
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 110 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMN 110 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3345678888888888888888888888888888887 22 2333333344444444454555555555555555
Q ss_pred HHHHH
Q 019982 118 FRKTL 122 (333)
Q Consensus 118 FKk~L 122 (333)
.|-.|
T Consensus 111 vKl~L 115 (129)
T 3tnu_B 111 TKLAL 115 (129)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 58
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=82.37 E-value=6.3 Score=30.21 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=16.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (333)
Q Consensus 44 RVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL 80 (333)
|+..+|.++..........+..|..|+.|+..||..|
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~el 57 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDEL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444
No 59
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=81.24 E-value=2.4 Score=33.64 Aligned_cols=34 Identities=38% Similarity=0.581 Sum_probs=23.7
Q ss_pred HHHhhhhhH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 41 ISTRVSDLE--------------SEHSALRSQLAEKDSRIAELQSQIE 74 (333)
Q Consensus 41 ~atRVs~LE--------------sE~~~LR~~laEKd~~i~~Lq~rv~ 74 (333)
+.-||+.|| .|++.|+++|.+||..|.-|++++.
T Consensus 31 Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 31 LKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 455677776 4577777777777777777776653
No 60
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=80.99 E-value=9.7 Score=33.06 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019982 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEA-------------LTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (333)
Q Consensus 62 Kd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~s-------------La~TvKKL~RDvaKLE~FKk~LmqSLqe 128 (333)
|+++..+|++++..+|.+|+ +..-+..++.+|... +.+--...+...++++..|+.|.+-|+.
T Consensus 27 Ke~l~~~l~~~i~q~d~elq----QLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~q 102 (150)
T 4dci_A 27 KEEAEREISNGIANADQQLA----QLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQ 102 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999888 555555555444443 2222356677788888888888777665
Q ss_pred c
Q 019982 129 D 129 (333)
Q Consensus 129 D 129 (333)
=
T Consensus 103 v 103 (150)
T 4dci_A 103 V 103 (150)
T ss_dssp H
T ss_pred H
Confidence 4
No 61
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=80.89 E-value=17 Score=28.00 Aligned_cols=72 Identities=18% Similarity=0.293 Sum_probs=49.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk 120 (333)
+.+....||..++.+.+.. +..+.+++.++..+|.+|+ .+..+.+....|-..|-+.=-+|--.+ -+++|
T Consensus 6 l~~~~~sLE~~l~e~e~~~---~~~~~~~q~~i~~lE~eL~----~~r~e~~~q~~EYq~LlnvK~~Ld~EI---atYRk 75 (84)
T 1gk4_A 6 LKGTNESLERQMREMEENF---AVEAANYQDTIGRLQDEIQ----NMKEEMARHLREYQDLLNVKMALDIEI---ATYRK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHH
Confidence 4455666777666666655 3457888999999999888 777788888888888877655555444 34554
Q ss_pred HH
Q 019982 121 TL 122 (333)
Q Consensus 121 ~L 122 (333)
-|
T Consensus 76 LL 77 (84)
T 1gk4_A 76 LL 77 (84)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 62
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=80.88 E-value=22 Score=29.15 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 48 LESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (333)
Q Consensus 48 LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~ 78 (333)
.|+++..||.++.+-...-+.|+-.+..+..
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~ 48 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAE 48 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888876544444444444444443
No 63
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=80.11 E-value=2 Score=34.82 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019982 61 EKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 61 EKd~~i~~Lq~rv~~le~aL~--~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (333)
=+-.+|.|+-.+|+.+...-- -+++...||.+||.+|+..--..++.|.
T Consensus 29 WR~qvikEIs~Kv~~Iqn~~L~E~~IRdLNDEINkL~rEK~~WE~rI~eLG 79 (92)
T 1x4t_A 29 WRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELG 79 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344567888888887765433 7889999999999999999998888774
No 64
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=79.43 E-value=11 Score=27.58 Aligned_cols=33 Identities=30% Similarity=0.491 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~F 118 (333)
...++...|.+||..|...|..|...++.|..+
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667778888888888888888877643
No 65
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=79.23 E-value=2.4 Score=37.24 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (333)
Q Consensus 46 s~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~ 78 (333)
..||..+..|...|+.|+..|.+|++|+..+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 35 (198)
T 4ghu_A 3 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 478888999999999999999999988887774
No 66
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=78.84 E-value=7.7 Score=31.08 Aligned_cols=67 Identities=15% Similarity=0.187 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019982 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (333)
Q Consensus 46 s~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L 122 (333)
..||..++.+....+ ..+..++..+..||.+|+ .+.++.+....|-..|-+.--+|--.++ +++|-|
T Consensus 22 ~~LE~~l~e~E~~~~---~e~~~~q~~i~~lE~eL~----~~r~e~~~ql~EYq~LlnvKl~Le~EIa---tYrkLL 88 (95)
T 3mov_A 22 RACLERIQELEDLLA---KEKDNSRRMLTDKEREMA----EIRDQMQQQLNDYEQLLDVKLALDMEIS---AYRKLL 88 (95)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 344444444444332 366778889999998887 7777777777888888776556654443 455444
No 67
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=78.76 E-value=20 Score=27.39 Aligned_cols=41 Identities=10% Similarity=0.170 Sum_probs=20.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL 80 (333)
||..++..|+.|......++.+-...+.+.+.+...+|..+
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev 43 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDEL 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45666666666655554444444444444444444444333
No 68
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=78.63 E-value=9.4 Score=30.01 Aligned_cols=9 Identities=44% Similarity=0.671 Sum_probs=4.3
Q ss_pred HHhhhhhHH
Q 019982 42 STRVSDLES 50 (333)
Q Consensus 42 atRVs~LEs 50 (333)
..||.+||.
T Consensus 5 e~rv~~LEr 13 (83)
T 2xdj_A 5 EDRVTQLER 13 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555544
No 69
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=77.48 E-value=11 Score=31.74 Aligned_cols=33 Identities=36% Similarity=0.625 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (333)
Q Consensus 66 i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa 102 (333)
+.+|+..|..|...|+ .+..+.++|-+++..|.
T Consensus 73 vqeLqgEI~~Lnq~Lq----~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQ----DASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHhhchhhh
Confidence 4444444444444333 55555555555555444
No 70
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=76.74 E-value=1.3 Score=32.27 Aligned_cols=29 Identities=28% Similarity=0.516 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSK 114 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (333)
..+.++++|.++-.+|..-+-.|.|||++
T Consensus 28 rlendnanlekdianlekdianlerdvar 56 (56)
T 3he4_A 28 RLENDNANLEKDIANLEKDIANLERDVAR 56 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHhhcC
Confidence 33457777777777777777777777764
No 71
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=76.62 E-value=21 Score=27.98 Aligned_cols=42 Identities=19% Similarity=0.361 Sum_probs=24.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (333)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL 80 (333)
.-+..++..|..|+++||-++.+-...+..|+++-..+-..|
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666665555444433
No 72
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=76.16 E-value=37 Score=34.24 Aligned_cols=72 Identities=11% Similarity=0.130 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019982 55 LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKE--RLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (333)
Q Consensus 55 LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~--kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 127 (333)
|...+.+++..+.++...|.+....|. ++...+++.. +....-..|...+.+|...|.+||..-.+++..+.
T Consensus 126 Iq~slk~~Q~Qi~en~n~~~~~~~~~e-~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~~~~ 199 (464)
T 1m1j_B 126 IDNKLVKTQKQRKDNDIILSEYNTEME-LHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQTDYCR 199 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhcccccccchhhHHHHHHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445555555555555555555554443 1111122222 12334455667788888889999988888887654
No 73
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=76.01 E-value=21 Score=29.30 Aligned_cols=69 Identities=19% Similarity=0.352 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHH
Q 019982 46 SDLESEHSALRSQLAEKD--------SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTV----RKLQRDVS 113 (333)
Q Consensus 46 s~LEsE~~~LR~~laEKd--------~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~Tv----KKL~RDva 113 (333)
..||.|+++|.+.|..-| ++.++|..-|..|-...+.-|..+..+. .|........ ++..-|+.
T Consensus 16 ~tLe~Eta~L~~al~~edsd~E~~~~rilhdl~seV~~LK~dv~~~L~k~~~e~----qe~~~FIKa~kvL~~rns~DI~ 91 (101)
T 4aj5_1 16 STLDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDINILLDKARLEN----QEGIDFIKATKVLMEKNSMDIM 91 (101)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHhHHHHH
Confidence 469999999999887322 4667888888887777763333333222 2333333333 44456777
Q ss_pred HHHHH
Q 019982 114 KLEVF 118 (333)
Q Consensus 114 KLE~F 118 (333)
||+.|
T Consensus 92 ~ire~ 96 (101)
T 4aj5_1 92 KIREY 96 (101)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 74
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=75.80 E-value=27 Score=27.53 Aligned_cols=21 Identities=10% Similarity=0.352 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019982 88 QADKERLSKENEALTNTVRKL 108 (333)
Q Consensus 88 ~~e~~kL~kE~~sLa~TvKKL 108 (333)
.++|++|..|..+-..-+.+|
T Consensus 54 ~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 54 ERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554444444
No 75
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=75.79 E-value=28 Score=27.66 Aligned_cols=77 Identities=16% Similarity=0.267 Sum_probs=40.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~----------~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (333)
|+-..+..|+.|-.+|.+.|.+=+..-+.|...+..++..+. .....-.-+...+.+|+++|-+...--.
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~ 87 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQ 87 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666665444444444444444444433 0011112233556677777777766666
Q ss_pred hhHHHHH
Q 019982 110 RDVSKLE 116 (333)
Q Consensus 110 RDvaKLE 116 (333)
..+.||.
T Consensus 88 ~qLdkL~ 94 (96)
T 3q8t_A 88 MQLDKLK 94 (96)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 6666653
No 76
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=75.36 E-value=25 Score=27.30 Aligned_cols=64 Identities=11% Similarity=0.144 Sum_probs=39.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (333)
.+.++.||.-++.+.... ...+.+++..+..+|.+|+ .+..+.+....|-..|-+.=-+|--.+
T Consensus 9 ~~q~~~Le~~l~e~E~~~---~~~l~~~q~~i~~lE~el~----~~r~e~~~ql~EYq~LlnvK~~Le~EI 72 (86)
T 1x8y_A 9 QCQLAAKEAKLRDLEDSL---ARERDTSRRLLAEKEREMA----EMRARMQQQLDEYQELLDIKLALDMEI 72 (86)
T ss_dssp ---CTTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344455666555555543 3456777888888888777 666777777777777777554555444
No 77
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=74.72 E-value=29 Score=27.26 Aligned_cols=75 Identities=12% Similarity=0.261 Sum_probs=52.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---------------DKLGQAQADKERLSKENEALTNTVR 106 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---------------~rL~~a~~e~~kL~kE~~sLa~TvK 106 (333)
--.|..|=.|+.++=..+.|+|....++..++.+.=..+. .++.....+...|.+|+=.||+++-
T Consensus 10 ld~ie~LP~El~r~~~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~l~~I~~~~~~~~~l~dEKv~lA~~~~ 89 (104)
T 4afl_A 10 LDSIENLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKLALLKQIQEAYGKCKEFGDDKVQLAMQTY 89 (104)
T ss_dssp HHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888899999888888777665433222 4566677778888889988887753
Q ss_pred H-HhhhHHHHH
Q 019982 107 K-LQRDVSKLE 116 (333)
Q Consensus 107 K-L~RDvaKLE 116 (333)
- +.|-+.+|+
T Consensus 90 dlvdkhirrLD 100 (104)
T 4afl_A 90 EMVDKHIRRLD 100 (104)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 3 344444444
No 78
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=74.10 E-value=62 Score=30.83 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHH
Q 019982 96 KENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 96 kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
+.-..|-+.|++||..+.-+++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777776665554
No 79
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=73.15 E-value=39 Score=28.00 Aligned_cols=56 Identities=23% Similarity=0.245 Sum_probs=40.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 019982 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENE 99 (333)
Q Consensus 44 RVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~----------~rL~~a~~e~~kL~kE~~ 99 (333)
-++.|+.|+..||..-..=-..|.+|+-.-..||++-. .||-.|.++|+=|..|-+
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888887776666667777777677776654 777777777777665543
No 80
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=73.15 E-value=5.2 Score=36.37 Aligned_cols=39 Identities=13% Similarity=0.308 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019982 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (333)
Q Consensus 88 ~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 126 (333)
++||.+.++--+.|-..+..+++.+.+|+..|+.|||.|
T Consensus 378 l~eQ~~I~~~l~~ld~~i~~~~~~~~~l~~~k~~Ll~~l 416 (425)
T 1yf2_A 378 LEEQKQIAKILSSVDKSIELKKQKKEKLQRMKKKIMELL 416 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666677777788888999999999999986
No 81
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=72.90 E-value=3.2 Score=38.88 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
.|++....+...|...|.-|..+.|.|.+.|.+|+.
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lke 89 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALRE 89 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777788888888887777744
No 82
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=72.54 E-value=5.6 Score=32.92 Aligned_cols=32 Identities=28% Similarity=0.480 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 46 s~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
++|.+|+..|++.+. .+..|+.+|..|+..|.
T Consensus 2 ~~l~~~~~~l~~~~~----~~~~l~~~~~~l~~~l~ 33 (182)
T 3kqg_A 2 STLNAQIPELKSDLE----KASALNTKIRALQGSLE 33 (182)
T ss_dssp -----------CHHH----HHHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 577888888888776 45666666666666553
No 83
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=71.94 E-value=25 Score=27.75 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 87 AQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 87 a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
..++|..|..|+..+.+....|.++..+|.
T Consensus 32 LKekN~~L~~e~~e~~~~~~~L~~en~qLk 61 (81)
T 2jee_A 32 LKEKNNSLSQEVQNAQHQREELERENNHLK 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 334455555555555555555555555543
No 84
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=71.91 E-value=22 Score=36.70 Aligned_cols=18 Identities=28% Similarity=0.145 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhcccccCC
Q 019982 115 LEVFRKTLVQSLKDDEDA 132 (333)
Q Consensus 115 LE~FKk~LmqSLqeD~~~ 132 (333)
-|..-|+|-|-..-|-..
T Consensus 178 Y~~~QKQLeQv~a~dL~p 195 (562)
T 3ghg_A 178 YEDQQKQLEQVIAKDLLP 195 (562)
T ss_dssp HHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhhcccCC
Confidence 456778888877666543
No 85
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=71.70 E-value=32 Score=26.51 Aligned_cols=46 Identities=17% Similarity=0.311 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 55 LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (333)
Q Consensus 55 LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~T 104 (333)
+-++|.+-.....+|+++|..|+..|. .+..++..+..|-..|..+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le----~s~~~q~~~~~Elk~~~e~ 50 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLE----KSQSEQDAFRSNLKTLLEI 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 445666667777888999998887776 7777777777776666554
No 86
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=71.38 E-value=20 Score=25.59 Aligned_cols=43 Identities=28% Similarity=0.376 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 68 ~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
+|++||..||..|. ... .++++=-.....+-.||.+-|.+||.
T Consensus 2 dlEekv~~Le~~ld----~Lq---Tr~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 2 ALEEKVEQLGSSLD----TLQ---TRFARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68899999998775 222 22222223345566788888888886
No 87
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=71.33 E-value=26 Score=25.29 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
...++...|..||..|...|..|...++.|..
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556667788888888888888777743
No 88
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=70.80 E-value=16 Score=26.39 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL 101 (333)
Q Consensus 61 EKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sL 101 (333)
+-...+..|.+|-..|...|. .|.++..+|..|-+.|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~----~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLK----EARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 334444555555555555554 5666666665555544
No 89
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=70.58 E-value=36 Score=26.92 Aligned_cols=59 Identities=19% Similarity=0.306 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019982 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (333)
Q Consensus 46 s~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (333)
..||.++..|+++-.-....+ .+.-+..|- ..+..+..|+.+|.-|.++|+..+..+..
T Consensus 33 ~~Le~~i~~l~~~~~~~~~~~--ye~~i~~Lr----~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 33 KILLAELEQLKGQGKSRLGDL--YEEEMRELR----RQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCcHHH--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888888877533222211 122333333 33347888999999999999998887754
No 90
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=70.03 E-value=6.7 Score=35.61 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019982 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (333)
Q Consensus 88 ~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 128 (333)
++||.+.++--+.|-..+.++++-+++|+..|++||+.+=-
T Consensus 168 l~EQ~~I~~~l~~ld~~i~~~~~~i~~l~~~k~~l~~~~~~ 208 (425)
T 1yf2_A 168 LEEQKQIAKILTKIDEGIEIIEKSINKLERIKKGLMHKLLT 208 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777777778888888888999999999999998643
No 91
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=69.45 E-value=38 Score=26.45 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019982 91 KERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (333)
Q Consensus 91 ~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 127 (333)
..+...+...|...+..|...+..|+.-.+.|-+-+.
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777777777777776666655554
No 92
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=69.25 E-value=16 Score=33.40 Aligned_cols=95 Identities=23% Similarity=0.271 Sum_probs=45.4
Q ss_pred hHHHHhcCCCChhhhHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 15 PEEVLQVLPSDPFEQLDVARKITSIAISTR----VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQAD 90 (333)
Q Consensus 15 p~eilaVLPsDPyEQLdvArkIts~A~atR----Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e 90 (333)
.++|.++|=.+|+-=++=+.=...+-+... ||=.|..+.+ |++|+..||..| .+
T Consensus 33 ~~~V~~yL~~~PdFf~~~~~Ll~~L~lph~~~~aVSL~erQ~~~--------------LR~r~~~Le~~L--------~~ 90 (252)
T 3e98_A 33 AEQVAAYLSQHPEFFVEHDELIPELRIPHQPGDAVSLVERQVRL--------------LRERNIEMRHRL--------SQ 90 (252)
T ss_dssp ----------------------------------CHHHHHHHHH--------------HHHHHHHHHHHH--------HH
T ss_pred HHHHHHHHHhCCHHHhhCHHHHHhCCCCCCCCCcccHHHHHHHH--------------HHHHHHHHHHHH--------HH
Confidence 567999999988632222222222222222 3444444444 445555555433 34
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHhhcccccC
Q 019982 91 KERLSKENEALTNTVRKLQRDVS---KLEVFRKTLVQSLKDDED 131 (333)
Q Consensus 91 ~~kL~kE~~sLa~TvKKL~RDva---KLE~FKk~LmqSLqeD~~ 131 (333)
....++||+.+.+.+..|...|- -|+.|-..|...|+++=.
T Consensus 91 Li~~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~F~ 134 (252)
T 3e98_A 91 LMDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHEFQ 134 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCC
Confidence 55678899999999999999887 588889999999987654
No 93
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=69.18 E-value=16 Score=25.71 Aligned_cols=17 Identities=12% Similarity=0.429 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019982 61 EKDSRIAELQSQIESIY 77 (333)
Q Consensus 61 EKd~~i~~Lq~rv~~le 77 (333)
+.+..+++|++||+-|+
T Consensus 14 ~le~~naeLEervstLq 30 (42)
T 2oqq_A 14 DLENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555665555444
No 94
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=68.58 E-value=12 Score=27.59 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 84 L~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
.....++...|.+||+.|...|..|.+.+.-|.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666778888888888888888888774
No 95
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=68.17 E-value=13 Score=36.43 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (333)
Q Consensus 46 s~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL 80 (333)
..||.|+..||+++.+-++.+..+++.+..++.+|
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666665555444333
No 96
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=67.96 E-value=6.5 Score=28.74 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
...++...|..||+.|...|..|...++.|.
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555667788888888888888877764
No 97
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=67.82 E-value=25 Score=28.58 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=19.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL 80 (333)
.+++..+.|+.+|+..|.+-...-.+.+.....++..|
T Consensus 19 ~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~El 56 (97)
T 2eqb_B 19 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEV 56 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666554444444444444444444
No 98
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=67.78 E-value=9.3 Score=29.20 Aligned_cols=32 Identities=13% Similarity=0.266 Sum_probs=13.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~l 76 (333)
|..||.++..|......=...+..|+..+..|
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555444443333333333444443333
No 99
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=67.76 E-value=7.3 Score=33.57 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (333)
Q Consensus 46 s~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~ 78 (333)
..||..+.++..+++.++..|++|+.|+..+|.
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467888888888888888888888888877764
No 100
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=67.62 E-value=19 Score=25.99 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL 101 (333)
Q Consensus 62 Kd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sL 101 (333)
|-..+.+|+.++..|+..-. ....+...|..|+..|
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~----~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNG----QLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 45567778877776665433 3333444444444444
No 101
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=66.91 E-value=46 Score=26.44 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
.+.+++.++-.|..+|..-++-|.-||.++
T Consensus 34 ~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ 63 (101)
T 3u1c_A 34 AAEERSKQLEDDIVQLEKQLRVTEDSRDQV 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444443
No 102
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=66.79 E-value=15 Score=35.32 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=30.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
+.-.+++|..|+.+|...+...+..|..|++.+.+++..++
T Consensus 3 ~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~ 43 (323)
T 1lwu_C 3 GQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVT 43 (323)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888888888888888888888877765554
No 103
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=66.53 E-value=24 Score=27.97 Aligned_cols=31 Identities=35% Similarity=0.500 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
...++...|.+||..|-..|..|..+|..|.
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667888999999999999999988774
No 104
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=66.10 E-value=30 Score=26.69 Aligned_cols=40 Identities=20% Similarity=0.372 Sum_probs=18.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHH-----HH-HHHHHHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAE-----KD-SRIAELQSQIESIYSSL 80 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laE-----Kd-~~i~~Lq~rv~~le~aL 80 (333)
|=.++..||.++..|-.+|++ .| ..+.+|..++..++..|
T Consensus 27 le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eL 72 (89)
T 2lw1_A 27 LPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQEL 72 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555543 11 23444444444444444
No 105
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=66.06 E-value=21 Score=26.45 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (333)
Q Consensus 30 LdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL 80 (333)
+....+|++. ...-|..+..+++.+-++...=.+.|..|+.|+..+|..|
T Consensus 15 l~~lEnIv~~-l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~~l 64 (65)
T 3m0d_C 15 LRVFENIVAV-LNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQTL 64 (65)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH-HhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Confidence 3444666665 5555666666666653333333556666776677666543
No 106
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=65.72 E-value=57 Score=28.01 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019982 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (333)
Q Consensus 47 ~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (333)
.|+.=+++|.+.+.++..++.-|++-....+ ..+.+..+..+|...-.+.|+.+.++|..
T Consensus 83 ~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~--------~~l~e~e~~leeyK~Kl~rv~~vkkeL~~ 142 (152)
T 4fla_A 83 LLAEYNGRLAAELEDRRQLARMLVEYTQNQK--------DVLSEKEKKLEEYKQKLARVTQVRKELKS 142 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666677777666665555444 33445666667777777777777776654
No 107
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=65.15 E-value=7.6 Score=26.26 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019982 83 KLGQAQADKERLSKENEALTNTVRKLQR 110 (333)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (333)
|+.+.++..+.|..+|..|.+.|.+|..
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4556677778888889888888887753
No 108
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=64.67 E-value=15 Score=29.08 Aligned_cols=28 Identities=18% Similarity=0.413 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 019982 34 RKITSIAISTRVSDLESEHSALRSQLAE 61 (333)
Q Consensus 34 rkIts~A~atRVs~LEsE~~~LR~~laE 61 (333)
+|.-.+.+..||..||.|-..||.++.+
T Consensus 34 rk~r~~e~~~r~~~Le~EN~~Lr~~v~~ 61 (87)
T 1hjb_A 34 AKMRNLETQHKVLELTAENERLQKKVEQ 61 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555443
No 109
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=64.27 E-value=14 Score=26.23 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=27.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le 77 (333)
.-|..||.|-..|+.+-.-|..+|+-|++.++.|-
T Consensus 10 nevaslenenetlkkknlhkkdliaylekeianlr 44 (49)
T 3he5_A 10 NEVASLENENETLKKKNLHKKDLIAYLEKEIANLR 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 45778888888898888888888888888777654
No 110
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=64.10 E-value=10 Score=35.03 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019982 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (333)
Q Consensus 87 a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 127 (333)
.++||.+.++--+.|-..+..+.+.+.+|+..|+.||+.|=
T Consensus 353 pl~eQ~~I~~~l~~id~~i~~~~~~i~~L~~lk~~LL~~lf 393 (406)
T 1ydx_A 353 SFQLQRKAGKIVFLLDQKLDQYKKELSSLTVIRDTLLKKLF 393 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777777777888888999999999999999874
No 111
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=63.95 E-value=31 Score=25.08 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 34 RKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (333)
Q Consensus 34 rkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~ 78 (333)
..|++. ...-|..+..+++.+.++...=...|+.|+.++..+|.
T Consensus 18 e~iv~~-l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~~ 61 (66)
T 3m0a_A 18 ENIVCV-LNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLER 61 (66)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHH
Confidence 444443 33344444444444433333334444444444444443
No 112
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=63.84 E-value=29 Score=27.05 Aligned_cols=50 Identities=22% Similarity=0.362 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019982 67 AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (333)
Q Consensus 67 ~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lm 123 (333)
.+|++||..||..|. .. +.++++=-.....+-.||.+-|.+||.+=+.+.
T Consensus 3 ~dlEEKv~~LE~sld----~L---QTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~ 52 (74)
T 3swf_A 3 MGLEEKVTRMESSVD----LL---QTRFARILAEYESMQQKLKQRLTKVEKFLKPLI 52 (74)
T ss_dssp -CHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 468999999998876 22 223333333455677899999999999876643
No 113
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=63.81 E-value=8.3 Score=25.95 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019982 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (333)
|+.+.++..+.|..||..|.+-|.+|.
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345666777778888888877777664
No 114
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=63.41 E-value=29 Score=26.75 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 019982 100 ALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (333)
Q Consensus 100 sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~~ 131 (333)
.|..+|-+.++.+++|+.-=+.|++-|++-..
T Consensus 32 eLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 32 ELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566777777777777777777777776543
No 115
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=63.34 E-value=51 Score=25.63 Aligned_cols=61 Identities=11% Similarity=0.211 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019982 58 QLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (333)
Q Consensus 58 ~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L 122 (333)
.+..++..+..|++++...+.... ...+.+.+|..|++.|..++.-..--+++|..=|..|
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rk----ele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eL 75 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKK----ELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHL 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 455677777777777776665444 6677778888888888777433344444444444433
No 116
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=63.30 E-value=35 Score=41.83 Aligned_cols=9 Identities=22% Similarity=0.593 Sum_probs=4.4
Q ss_pred HHhhccccc
Q 019982 122 LVQSLKDDE 130 (333)
Q Consensus 122 LmqSLqeD~ 130 (333)
|+.+|..|.
T Consensus 2078 Li~gL~~Ek 2086 (3245)
T 3vkg_A 2078 LLDNLNSER 2086 (3245)
T ss_dssp HHHHHHHHH
T ss_pred HHHhhhhcc
Confidence 555554443
No 117
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=62.53 E-value=83 Score=27.80 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=18.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
++.+|.-++.|+.++.-=...-..|+..+..|..+|.
T Consensus 43 ~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 43 ISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444444445555555554444
No 118
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=62.51 E-value=22 Score=34.62 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 52 HSALRSQLAEKDSRIAELQSQIESIYS 78 (333)
Q Consensus 52 ~~~LR~~laEKd~~i~~Lq~rv~~le~ 78 (333)
+..|++++.+-.+...+|++.+..++.
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~ 31 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTEL 31 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 119
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=62.28 E-value=29 Score=25.07 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
.....|.+|++--..--..+.+|.-.|+||
T Consensus 20 ~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 20 SLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555566666666655
No 120
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=60.80 E-value=35 Score=27.27 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019982 53 SALRSQLAEKDSRIAELQSQIESIYSS----LS----DKLGQAQADKERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 53 ~~LR~~laEKd~~i~~Lq~rv~~le~a----L~----~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (333)
..||+.+.+|.-.|..|.+.+..+..+ ++ --|.+|..|...|...-..|.+--++.|
T Consensus 25 ~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~av~g~E~RRIN 89 (90)
T 4b6x_A 25 AALRQEIEDKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRRFAVLRNEDRRIN 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 578999999999988887766544322 22 3345555555555555555554444443
No 121
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=60.63 E-value=23 Score=31.93 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 54 ALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 54 ~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
.+.++|..-|.+|..|+.....|-.+|. ...+|...|.++-++|-+.++.+.-.++|-
T Consensus 10 ~~q~ql~~ad~LV~~L~~En~~L~~ql~----~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~ 67 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNENFVLSEKLD----TKATEIKQLQKQIDSLNAQVKELKTQTSQQ 67 (190)
T ss_dssp ----------CHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 3556777788889999988888887776 788888889998899988888777666653
No 122
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=60.35 E-value=13 Score=34.30 Aligned_cols=40 Identities=8% Similarity=0.156 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019982 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (333)
Q Consensus 88 ~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 127 (333)
++||.+.++--+.+-..+..+++-+++|+.+|+.||+.+=
T Consensus 166 l~eQ~~I~~~l~~~d~~i~~~~~~~~~l~~~k~~l~~~~f 205 (406)
T 1ydx_A 166 KNEQHAIANTLSVFDERLENLASLIEINRKLRDEYAHKLF 205 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666667777778888899999999998763
No 123
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=60.20 E-value=42 Score=25.97 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 50 SEHSALRSQLAEKDSRIAELQSQIE 74 (333)
Q Consensus 50 sE~~~LR~~laEKd~~i~~Lq~rv~ 74 (333)
+|+..|+.+.+..+..+++++.++.
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~~~ 27 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDSLA 27 (86)
T ss_dssp ---------CTTHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655555555555544
No 124
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=60.04 E-value=76 Score=27.58 Aligned_cols=71 Identities=20% Similarity=0.294 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 27 FEQLDVARKITSIAISTRVSDLESEHSALRSQL---AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (333)
Q Consensus 27 yEQLdvArkIts~A~atRVs~LEsE~~~LR~~l---aEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa 102 (333)
.+.|-.+|+... ....|+..||.+-..+++-. .+++..+..|++++..-. .+-..|+.++.++.+|-..|.
T Consensus 19 eD~L~~~R~el~-~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~----~~R~~aE~~~~~ie~ElEeLT 92 (154)
T 2ocy_A 19 EEQLNKSLKTIA-SQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKEN----ELRTKAEEEADKLNKEVEDLT 92 (154)
T ss_dssp HHHHHHHHHHHH-HHHHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH----HHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 456667777655 34667777776555544322 233333333333322111 233345555555555555554
No 125
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=59.88 E-value=62 Score=25.50 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 71 SQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 71 ~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
+|+..++.. ++.+.+++.++-.|-.+|..-++-|..|+.+++
T Consensus 23 d~ae~~e~~----~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~ 64 (101)
T 3u59_A 23 DRAEQAEAD----KKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYS 64 (101)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555533 336666666666666666666666666655543
No 126
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=59.59 E-value=11 Score=25.50 Aligned_cols=27 Identities=11% Similarity=0.263 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019982 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (333)
|+.+.++..+.|..+|..|.+-|.+|.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 566777778888888888888777764
No 127
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=59.57 E-value=35 Score=24.89 Aligned_cols=18 Identities=11% Similarity=0.228 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019982 61 EKDSRIAELQSQIESIYS 78 (333)
Q Consensus 61 EKd~~i~~Lq~rv~~le~ 78 (333)
-|-..+.+|+.+|..|+.
T Consensus 20 rKk~~~~~Le~~v~~L~~ 37 (63)
T 2wt7_A 20 RRRELTDTLQAETDQLED 37 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355667788888776664
No 128
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=59.30 E-value=11 Score=25.35 Aligned_cols=27 Identities=4% Similarity=0.160 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019982 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (333)
|+.+.++..+.|..+|..|.+.|.+|.
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 345666777788888888887776664
No 129
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=59.22 E-value=11 Score=25.51 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019982 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (333)
|+.+.++..+.|..||..|.+.|.+|.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 345556667777777777777776663
No 130
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=59.21 E-value=61 Score=31.06 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=13.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSR 65 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~ 65 (333)
.+.-.-..||..+..+|....+.+..
T Consensus 364 ~l~~~~~~le~~~~~~~~~~~~~~~~ 389 (487)
T 3oja_A 364 TLEQKKKALDEQVSNGRRAHAELDGT 389 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44444455555555555555444443
No 131
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=59.12 E-value=71 Score=25.96 Aligned_cols=42 Identities=24% Similarity=0.405 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (333)
Q Consensus 35 kIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~l 76 (333)
|...--++.....||+-.+.||.+-+++...|.+||.|+...
T Consensus 17 K~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~ 58 (101)
T 1d7m_A 17 KVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDET 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566677888889999999999999999999997744
No 132
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=58.00 E-value=12 Score=25.33 Aligned_cols=27 Identities=11% Similarity=0.157 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019982 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (333)
|+.+.++..+.|..||..|.+.|.+|.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 455666777788888888888777664
No 133
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=57.70 E-value=38 Score=29.98 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=23.8
Q ss_pred CccchHHHHHHHHhccCHHHHHHHHHHHHHHhhc
Q 019982 265 TRVDGKEFFRQVRNRLSYEQFAIFLANVKELNAH 298 (333)
Q Consensus 265 ~rVDGKEFFRQARsRLSYEQFsaFLANIKELNAh 298 (333)
.+||=-.|.|++|. |+=|||-. -|-|++.+++
T Consensus 141 g~I~ld~ylK~vR~-LaReQF~~-ral~~Ki~~~ 172 (174)
T 2p22_A 141 GTIPLDTFVKQGRE-LARQQFLV-RWHIQRITSP 172 (174)
T ss_dssp TSSCHHHHHHHHHH-HHHHHHHH-HHHHHHHHSS
T ss_pred CCCCHHHHHHHHHH-HHHHHHHH-HHHHHHHHhh
Confidence 56888899999996 89999965 4555555543
No 134
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=57.63 E-value=96 Score=26.97 Aligned_cols=50 Identities=12% Similarity=0.240 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 29 QLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (333)
Q Consensus 29 QLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~a 79 (333)
||+.++.-... +..+++..+.|+.+|...|.+=...-.+.+.....++..
T Consensus 38 ~lE~~r~~~~~-l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~E 87 (154)
T 2ocy_A 38 NYNQLKEDYNT-LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKE 87 (154)
T ss_dssp TTHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433333 335566788888888877764433333333333333333
No 135
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=57.58 E-value=12 Score=25.31 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019982 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (333)
|+.+.++..+.|.+++.-|++.|.+|.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456677777888888888888887765
No 136
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=57.52 E-value=50 Score=31.66 Aligned_cols=91 Identities=11% Similarity=0.169 Sum_probs=61.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019982 36 ITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (333)
Q Consensus 36 Its~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~--~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (333)
+|-..|-+|+++|+.++..+++.+..|.+.+.+|+..+........ .++ ..+-...-|. -+..+|--|...-+
T Consensus 302 ~~~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----e~~~~~~~~~~~~~ 376 (406)
T 4dyl_A 302 LTVESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRERV-QLLGKRQVLQ----EALQGLQVALCSQA 376 (406)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGG-GGHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHH-HHHhHHhhHH----HHHHHHHHHHhHHH
Confidence 3456788999999999999999999999999999977765432111 110 0000111111 12355666777888
Q ss_pred HHHHHHHHHHhhcccccC
Q 019982 114 KLEVFRKTLVQSLKDDED 131 (333)
Q Consensus 114 KLE~FKk~LmqSLqeD~~ 131 (333)
||++=|-.|-+.|++-..
T Consensus 377 ~~~~q~~~~~~~~~~~~~ 394 (406)
T 4dyl_A 377 KLQAQQELLQTKLEHLGP 394 (406)
T ss_dssp HHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 888888888778876554
No 137
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=57.50 E-value=76 Score=25.77 Aligned_cols=52 Identities=25% Similarity=0.440 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (333)
Q Consensus 48 LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~ 103 (333)
|=.++.+|..++.+.+..+..|+.++..-.. +-..|+.++.++..|-..|..
T Consensus 10 lre~l~~le~~~~~~~~e~~~L~~~l~eE~~----~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVKRLREDIAKENE----LRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666666666665554332 233556666666666555543
No 138
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=57.11 E-value=12 Score=28.59 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 51 EHSALRSQLAEKDSRIAELQSQIESIY 77 (333)
Q Consensus 51 E~~~LR~~laEKd~~i~~Lq~rv~~le 77 (333)
.++.|...|.+||+.|.+|+.++-.+.
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555544443
No 139
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=56.89 E-value=40 Score=26.00 Aligned_cols=48 Identities=17% Similarity=0.260 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 65 ~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
.|.+|+.|++-.|..+. ...+...+.+++-+.|...++.|...+..++
T Consensus 15 Ri~~LE~klAfqE~tIe----eLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 15 RLVELETRLSFQEQALT----ELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444443332 4444445555566666666666655555444
No 140
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=56.70 E-value=68 Score=24.94 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhhhHHH
Q 019982 98 NEALTNTVRKLQRDVSK 114 (333)
Q Consensus 98 ~~sLa~TvKKL~RDvaK 114 (333)
|..+-+.+..|.+||.-
T Consensus 44 R~~~E~d~~~LrkdvD~ 60 (86)
T 3swk_A 44 REEAENTLQSFRQDVDN 60 (86)
T ss_dssp HHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhhHHH
Confidence 34444455555555543
No 141
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=56.35 E-value=47 Score=25.57 Aligned_cols=26 Identities=12% Similarity=0.397 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 56 RSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 56 R~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
+..|..=...|+.|+.++..|+..|.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555666677777777776664
No 142
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=55.55 E-value=71 Score=28.82 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=7.2
Q ss_pred hhhhHHHHHHHHHHHH
Q 019982 45 VSDLESEHSALRSQLA 60 (333)
Q Consensus 45 Vs~LEsE~~~LR~~la 60 (333)
+..+|+++..++.++.
T Consensus 71 ~~~~~a~l~~~~a~l~ 86 (341)
T 3fpp_A 71 IKEVEATLMELRAQRQ 86 (341)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 143
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=55.40 E-value=36 Score=26.37 Aligned_cols=32 Identities=34% Similarity=0.461 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
...++...|.+||..|-..|..|...|..|..
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677888888888888888888887753
No 144
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=55.37 E-value=16 Score=28.44 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 019982 34 RKITSIAISTRVSDLESEHSALRSQLA 60 (333)
Q Consensus 34 rkIts~A~atRVs~LEsE~~~LR~~la 60 (333)
+|.-.+.+..||..||.|-..||.++.
T Consensus 34 rk~r~~e~~~r~~~L~~eN~~L~~~v~ 60 (78)
T 1gu4_A 34 AKMRNLETQHKVLELTAENERLQKKVE 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 145
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=55.37 E-value=27 Score=27.78 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 46 s~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
++|++++..|..+...-+..|++++.++...+. ....++..+|..|-+.+-...-.|-.-+|-+
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~------~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~ 67 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRDA------KQTVQKHIDLLHTYNEIRDIALGMIGKVAEH 67 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 456666666666666655556555554443211 1345677788888877777666666555544
No 146
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=55.16 E-value=58 Score=24.94 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019982 64 SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (333)
Q Consensus 64 ~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L 122 (333)
+....++..+..+|.+|+ .+..+.+....|-..|-+.=-+|--++ .+++|-|
T Consensus 5 ~e~~~~~~~i~~lE~eL~----~~r~e~~~ql~EYq~LlniKl~Le~EI---atYRkLL 56 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMA----EMRARMQQQLDEYQELLDIKLALDMEI---HAYRKLL 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 344566666777776666 556666666666666666544555444 3455444
No 147
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=54.84 E-value=22 Score=25.06 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVR 106 (333)
Q Consensus 66 i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvK 106 (333)
+.+|+.|+..||. |....++...-|+.||.-|-+-+|
T Consensus 5 l~eLE~r~k~le~----~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 5 LSELENRVKDLEN----KNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHhc
Confidence 3456666665553 334666667788888888766554
No 148
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=54.78 E-value=53 Score=23.15 Aligned_cols=12 Identities=8% Similarity=0.122 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 019982 61 EKDSRIAELQSQ 72 (333)
Q Consensus 61 EKd~~i~~Lq~r 72 (333)
++.+.+..+..+
T Consensus 23 ~~~~~~~~~k~~ 34 (60)
T 3htk_A 23 LKTDEFLKAKEK 34 (60)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 149
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=54.46 E-value=16 Score=24.11 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 93 RLSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 93 kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
.|.+|-..|..-|.||+.-|.+||.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777888888888888874
No 150
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=54.40 E-value=45 Score=30.43 Aligned_cols=15 Identities=13% Similarity=0.240 Sum_probs=6.6
Q ss_pred hhhHHHHHHHHHHHH
Q 019982 46 SDLESEHSALRSQLA 60 (333)
Q Consensus 46 s~LEsE~~~LR~~la 60 (333)
..+++++..++.+|.
T Consensus 73 ~~~~a~l~~~~a~l~ 87 (369)
T 4dk0_A 73 NTRKAALASYQAQLV 87 (369)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 151
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=53.98 E-value=1.2e+02 Score=26.93 Aligned_cols=99 Identities=17% Similarity=0.260 Sum_probs=64.9
Q ss_pred CCCChhhhHH-HHHHH---HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH-------
Q 019982 22 LPSDPFEQLD-VARKI---TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----DKLG------- 85 (333)
Q Consensus 22 LPsDPyEQLd-vArkI---ts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~-----~rL~------- 85 (333)
+|.-|.|||= |-.+= +--+|+...-.||.|-..||..-+|+|......+.++..|-..|. +++.
T Consensus 2 m~~yple~~~~~k~~r~e~aek~~~~k~~~le~ek~~l~~~e~~r~k~~~h~~~k~~qlre~~d~gtt~~~i~~m~~yI~ 81 (169)
T 3k29_A 2 MVRYPLEPVLSIKKDRVDRAEKVVKEKRRLLELEQEKLRERESERDKVKNHYMQKIRQLREQLDDGTTSDAILKMKAYIK 81 (169)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 4667778752 22221 345678888899999999999999999999998888888866654 1111
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHH
Q 019982 86 -----------QAQADKERLSKENEALTNTVR---KLQRDVSKLEVFRK 120 (333)
Q Consensus 86 -----------~a~~e~~kL~kE~~sLa~TvK---KL~RDvaKLE~FKk 120 (333)
.+.+-..++..++..|...-+ .-.++++|++.-|+
T Consensus 82 llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eKfelHrq 130 (169)
T 3k29_A 82 VVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKTRLHKE 130 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112223455556666655433 34567777766666
No 152
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=53.97 E-value=52 Score=24.86 Aligned_cols=34 Identities=38% Similarity=0.628 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 84 L~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
|..++....+|-|-|++|+.-++.|++.+.+|-+
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHh
Confidence 3477777788888888898888888888888754
No 153
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=53.43 E-value=20 Score=34.48 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=25.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL 80 (333)
...|...|.++..|+.+|.+-+..|.+|+.+|.+|+..+
T Consensus 18 e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 18 EQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777777766666677766666666544
No 154
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=53.17 E-value=93 Score=30.87 Aligned_cols=17 Identities=12% Similarity=0.219 Sum_probs=9.7
Q ss_pred HHHHHhhhhhHHHHHHH
Q 019982 39 IAISTRVSDLESEHSAL 55 (333)
Q Consensus 39 ~A~atRVs~LEsE~~~L 55 (333)
.=|..||..|-.++..|
T Consensus 63 r~~~~rIe~L~~~L~~~ 79 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNY 79 (390)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 44556666666655554
No 155
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=53.00 E-value=84 Score=26.93 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019982 71 SQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (333)
Q Consensus 71 ~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (333)
+|+..|+.++. .+.++..+..+|.+.|-..|..+-++++
T Consensus 92 ~ri~~Le~E~~----~~~~el~~~v~eae~ll~~v~~~l~~ia 130 (151)
T 1yke_B 92 RKIDMLQKKLV----EVEDEKIEAIKKKEKLLRHVDSLIEDFV 130 (151)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444554444 5555666666666666666666666654
No 156
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=52.97 E-value=79 Score=30.35 Aligned_cols=36 Identities=28% Similarity=0.483 Sum_probs=22.8
Q ss_pred HHHHHHhccCHHHHHHHHHH-------------HHHHhhccccHHHHHHh
Q 019982 272 FFRQVRNRLSYEQFAIFLAN-------------VKELNAHKQTKEETLRK 308 (333)
Q Consensus 272 FFRQARsRLSYEQFsaFLAN-------------IKELNAhkQTREETL~K 308 (333)
|=.|-=.|| |++|++|+.. |+++|.++..=|.-|..
T Consensus 245 fd~qk~qRl-~q~~~~fv~~hl~vaF~~dPe~~l~~~~~~~~~~~r~l~~ 293 (302)
T 3ibp_A 245 FDVQKTQRL-HQAFSRFIGSHLAVAFESDPEAEIRQLNSRRVELERALSN 293 (302)
T ss_dssp HHHHHHHHH-HHHHHHHHHHTTTTSSSCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHH-HHHHHHHHhhchhhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555 8888888764 77777766655555543
No 157
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=52.91 E-value=15 Score=25.15 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019982 84 LGQAQADKERLSKENEALTNTVRKLQRDV 112 (333)
Q Consensus 84 L~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (333)
+.+.++..+.|..||.-|.+.|.+|..-+
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 34555566666667766666666665433
No 158
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=52.49 E-value=71 Score=25.37 Aligned_cols=52 Identities=19% Similarity=0.306 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 56 RSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (333)
Q Consensus 56 R~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (333)
|..|.|-=.....|.++++.++..+. +|+.-.++...|+..-.-|+.-+++|
T Consensus 30 r~AL~eaL~EN~~Lh~~ie~~~eEi~-~Lk~en~~L~elA~~~q~la~~i~~L 81 (83)
T 1wlq_A 30 RKALYEALKENEKLHKEIEQKDSEIA-RLRKENKDLAEVAEHVQYMAEVIERL 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445556666666666666553 44444444445555555555555554
No 159
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=52.21 E-value=31 Score=27.08 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 88 QADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 88 ~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
.-|+.-|..|..++..+..|+.--+..|
T Consensus 43 t~E~e~l~~El~s~~~~~~r~~~ri~el 70 (77)
T 2w83_C 43 TCEKDVLQGELEAVKQAKLKLEEKNREL 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 160
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=51.77 E-value=26 Score=25.46 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (333)
Q Consensus 62 Kd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (333)
|-..+.+|+.+|..|+. +|..|..|...|...+..|
T Consensus 20 Kk~~~~~Le~~v~~L~~-----------~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKA-----------QNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 55667777777776664 4444444544444444443
No 161
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=51.66 E-value=57 Score=33.58 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=39.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLS 95 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~ 95 (333)
+.=+...|.|..++|+.|.+-+..++.+|+|+...+..|+ -++.++|+.+++.
T Consensus 313 ~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~-~~~~~~~~~n~~~ 365 (551)
T 2b5u_A 313 THPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYN-SRKSELDAANKTL 365 (551)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHhhhhHH
Confidence 3346678889999999999999999999999887777775 2233445544443
No 162
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=51.57 E-value=19 Score=30.63 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=24.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le 77 (333)
+..|+..+..|.+.|+.++..|++|++++..+|
T Consensus 5 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (192)
T 1ca9_A 5 IEALSSKVQQLERSIGLKDLAMADLEQKVLEME 37 (192)
T ss_dssp THHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445666667777788888888888888877655
No 163
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=51.26 E-value=13 Score=35.62 Aligned_cols=40 Identities=10% Similarity=0.206 Sum_probs=28.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL 80 (333)
+-.+|..+|+++..|+..|.+.+..|.+|+.+|.+|+..+
T Consensus 9 lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~ 48 (319)
T 1fzc_C 9 YEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 48 (319)
T ss_dssp -CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777788888888877777777777777777666544
No 164
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=51.03 E-value=48 Score=29.05 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhhHH-HHHHHHHHHHhhccc
Q 019982 98 NEALTNTVRKLQRDVS-KLEVFRKTLVQSLKD 128 (333)
Q Consensus 98 ~~sLa~TvKKL~RDva-KLE~FKk~LmqSLqe 128 (333)
+..|.--+..|...|. ++|.||.+|.--.++
T Consensus 134 r~~L~Py~eelr~kl~~~~eeLr~~l~P~~ee 165 (191)
T 1nfn_A 134 RVRLASHLRKLRKRLLRDADDLQKRLAVYQAG 165 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444444444444443 678888887544443
No 165
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=50.93 E-value=75 Score=32.86 Aligned_cols=45 Identities=27% Similarity=0.310 Sum_probs=31.8
Q ss_pred HHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 37 TSIAISTRVS-DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 37 ts~A~atRVs-~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
-......-|+ .||..+..|+.++...-..|..||..|..+=..+|
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQ 148 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMK 148 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566666 88888888888888777777777776665555554
No 166
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=50.17 E-value=34 Score=33.50 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~~ 131 (333)
...++.++|.++...+...++.+...+.+.|..+|.|-.-|+|-.+
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 14 HLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3334444444444444444445555556666666666666666554
No 167
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=50.02 E-value=20 Score=24.28 Aligned_cols=27 Identities=11% Similarity=0.326 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019982 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (333)
|+.+.++..+.|..+|..|.+.|.+|.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 556667777788888888887776664
No 168
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=50.01 E-value=96 Score=28.34 Aligned_cols=52 Identities=13% Similarity=0.241 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019982 57 SQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 57 ~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (333)
..|.|-=..+..|.++|..++..+ ++|+.-.++...|+.+-.-|+..+++|.
T Consensus 108 ~AL~eaLeEN~~Lh~~ie~l~eEi-~~LkeEn~eLkeLae~~q~la~vi~~l~ 159 (209)
T 2wvr_A 108 KALYEALKENEKLHKEIEQKDNEI-ARLKKENKELAEVAEHVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455666666666666555 3555555555555566666666666554
No 169
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=49.30 E-value=57 Score=30.28 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019982 34 RKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (333)
Q Consensus 34 rkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (333)
+|..-.|+.+.++.||+|...|+..... .+.+|..+++. .+| ..|-..-|+|..=..
T Consensus 125 fraLEa~L~~v~~~Le~e~~~l~~~~~~---~L~~L~~~i~~----------------~~L----~~Ll~~~k~L~~~~~ 181 (261)
T 3rkg_A 125 HRALESIFINVMSALETDFKLHSQICIQ---ILNDLENEVNR----------------LKL----RHLLIKSKDLTLFYQ 181 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHSCCH----------------HHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCH----------------HHH----HHHHHHhHHHHHHHH
Confidence 5566677778888888887777655432 34444444321 111 112234456777788
Q ss_pred HHHHHHHHHHhhcccccCC
Q 019982 114 KLEVFRKTLVQSLKDDEDA 132 (333)
Q Consensus 114 KLE~FKk~LmqSLqeD~~~ 132 (333)
|...++..|.+=|.+|++-
T Consensus 182 kv~~vr~~leelLddDeDm 200 (261)
T 3rkg_A 182 KTLLIRDLLDELLENDDDL 200 (261)
T ss_dssp HHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCHHHH
Confidence 8888999999999988873
No 170
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=49.11 E-value=20 Score=24.07 Aligned_cols=26 Identities=15% Similarity=0.078 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019982 84 LGQAQADKERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 84 L~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (333)
+.+.++..+.|..+|..|.+.|.+|.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44556666777777777777776664
No 171
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=48.54 E-value=1e+02 Score=24.47 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHH
Q 019982 96 KENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 96 kE~~sLa~TvKKL~RDvaKLE 116 (333)
..|..+.+.|+.-.+||++|+
T Consensus 78 s~R~~~~~klr~Yk~dL~~lk 98 (102)
T 2qyw_A 78 TFRNPMMSKLRNYRKDLAKLH 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777753
No 172
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=48.50 E-value=34 Score=23.37 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=4.7
Q ss_pred hhhhhHHHHHHH
Q 019982 44 RVSDLESEHSAL 55 (333)
Q Consensus 44 RVs~LEsE~~~L 55 (333)
||++||.-+..|
T Consensus 2 RMnQLE~KVEeL 13 (36)
T 1kd8_B 2 KVKQLKAKVEEL 13 (36)
T ss_dssp CHHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 334444433333
No 173
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=48.11 E-value=1.5e+02 Score=26.32 Aligned_cols=81 Identities=14% Similarity=0.181 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHH
Q 019982 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS--KLEVFRKT 121 (333)
Q Consensus 47 ~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva--KLE~FKk~ 121 (333)
.+-+=|+-||.++++.+..+++..++|.....+|. .-+..|..+.+|+..-+.--....+++.--.. -+|-|+..
T Consensus 75 ~m~~yI~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eKfelHrqiwqaE~kre~E~qEElEqEEf~s~ 154 (169)
T 3k29_A 75 KMKAYIKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKTRLHKEEWMKEALKEEARQEEKEQDEMGQL 154 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33444667899999999999999888888888887 45667777777776666645555566555444 45678776
Q ss_pred HHhhcc
Q 019982 122 LVQSLK 127 (333)
Q Consensus 122 LmqSLq 127 (333)
+-+.=+
T Consensus 155 ~~~~~~ 160 (169)
T 3k29_A 155 LHQLHK 160 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655433
No 174
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=48.10 E-value=1.2e+02 Score=26.90 Aligned_cols=86 Identities=12% Similarity=0.246 Sum_probs=48.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKER----LSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~k----L~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
-..|..+|.++..|+..|..=-.....+-+-...+..+- ..+..++.+-.. +...-..+...+++...-+..|+.
T Consensus 20 R~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~-~~f~~~L~~~~~~~~~~~~~d~~~~~~L~~f~~~l~ei~~ 98 (265)
T 2q12_A 20 RSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAAT-HLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSS 98 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHGGGGSCCC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888777654433333333222222211 233344444221 112223456788888888999999
Q ss_pred HHHHHHhhccc
Q 019982 118 FRKTLVQSLKD 128 (333)
Q Consensus 118 FKk~LmqSLqe 128 (333)
++..|++.++.
T Consensus 99 ~~~~l~~~~~~ 109 (265)
T 2q12_A 99 CHAVLSTQLAD 109 (265)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887753
No 175
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=47.84 E-value=37 Score=24.47 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 50 SEHSALRSQLAEKDSRIAELQSQIESIY 77 (333)
Q Consensus 50 sE~~~LR~~laEKd~~i~~Lq~rv~~le 77 (333)
+|+..||+.++|=...+.+|++++..|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444444444444444443
No 176
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=47.22 E-value=76 Score=22.74 Aligned_cols=16 Identities=13% Similarity=0.320 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 019982 62 KDSRIAELQSQIESIY 77 (333)
Q Consensus 62 Kd~~i~~Lq~rv~~le 77 (333)
|...+.+|+.+|..|+
T Consensus 20 Kk~~~~~LE~~v~~L~ 35 (55)
T 1dh3_A 20 KKEYVKSLENRVAVLE 35 (55)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4466777777766443
No 177
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=46.79 E-value=71 Score=29.88 Aligned_cols=84 Identities=12% Similarity=0.256 Sum_probs=39.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQS---QIESIYSSLSDKLGQAQADKER----LSKENEALTNTVRKLQRDVS 113 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~---rv~~le~aL~~rL~~a~~e~~k----L~kE~~sLa~TvKKL~RDva 113 (333)
+-..|..+|.++..|+..|..=-.....+-+ .+...... +..++.+... +......+..++++...-+.
T Consensus 19 FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~----f~~~L~~~~~~~~~~~~~d~~v~~~l~~f~~~~~ 94 (385)
T 2q13_A 19 TRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHL----TSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVID 94 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTTTTSCCCC---CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhccCCCCCcHHHHHHHHHHHHHHH
Confidence 3456677788888877777643333322222 22222222 2233333221 11122223455666666666
Q ss_pred HHHHHHHHHHhhccc
Q 019982 114 KLEVFRKTLVQSLKD 128 (333)
Q Consensus 114 KLE~FKk~LmqSLqe 128 (333)
.|+.+++.|++.++.
T Consensus 95 ei~~~~~~l~~~~~~ 109 (385)
T 2q13_A 95 ELSSCHAVLSTQLAD 109 (385)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666555543
No 178
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=46.50 E-value=1.2e+02 Score=26.23 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHH
Q 019982 94 LSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 94 L~kE~~sLa~TvKKL~RDvaKLE 116 (333)
+..+-+.|..+.+.|.-+.+|||
T Consensus 85 ~ea~la~l~~~~~~LeAE~aKLe 107 (146)
T 2xnx_M 85 AKLELDQLSSEKEQLTIEKAKLE 107 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 33334444444444555555543
No 179
>1ztm_A Fusion glycoprotein; fusion protein, 6-helix bundle,trimer, post-fusion, viral PR; HET: NAG; 3.05A {Human parainfluenza virus 3}
Probab=46.44 E-value=53 Score=33.44 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=45.7
Q ss_pred HHHH--HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 30 LDVA--RKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (333)
Q Consensus 30 LdvA--rkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKK 107 (333)
|.|| -.||+-+--.+....++++.+|+..++.=.+.+.+|+.-++.+=.+++ ++|+.. |+.|.-++.+
T Consensus 102 LGVataaqiTAavAl~qa~~na~~I~~lk~si~~tn~Av~~l~~g~~~l~~av~-----~lQd~I-----N~~i~PaIn~ 171 (490)
T 1ztm_A 102 LGVATSAQITAAVALVEAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIK-----SVQDYV-----NKEIVPSIAR 171 (490)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH-----HHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH-----HHHhhhhhhh
Confidence 5666 789888888899999999999999999999999999999998888875 333332 5678888888
Q ss_pred HhhhHHHHH
Q 019982 108 LQRDVSKLE 116 (333)
Q Consensus 108 L~RDvaKLE 116 (333)
|..+++-+.
T Consensus 172 l~C~v~~~~ 180 (490)
T 1ztm_A 172 LGCEAAGLQ 180 (490)
T ss_dssp HHHHHHHHH
T ss_pred cccHhHHHH
Confidence 888887654
No 180
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=46.41 E-value=2.2e+02 Score=28.98 Aligned_cols=26 Identities=12% Similarity=0.070 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 56 RSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 56 R~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
...|.++...+.+.+..|.++-..|.
T Consensus 92 ~~~lk~~~~q~~dndn~~~e~S~eLe 117 (491)
T 1m1j_A 92 INILKPGLEGAQQLDENYGHVSTELR 117 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHH
Confidence 44445555555555555554444444
No 181
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=46.12 E-value=74 Score=28.30 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (333)
Q Consensus 51 E~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (333)
-+.-.|+-+....+.+..||..+..||..|- ...+++..+..| |-.|+.-|
T Consensus 122 paE~ireli~~AertV~kLqkeiD~LEDeL~----~eKek~k~i~~e---LDqTl~eL 172 (175)
T 3mud_A 122 PAEVIRELICYCLDTTAKNEKSIDDLEEKVA----HAKEENLNMHQM---LDQTLLEL 172 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHh
Confidence 3444566666667777777777777774443 555555555555 44555444
No 182
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=46.07 E-value=14 Score=23.53 Aligned_cols=18 Identities=39% Similarity=0.649 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhhHHHHHH
Q 019982 100 ALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 100 sLa~TvKKL~RDvaKLE~ 117 (333)
.|-+.||+|.++|-|||.
T Consensus 5 kldanvkrlekevgkleg 22 (28)
T 4dac_A 5 KLDANVKRLEKEVGKLEG 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eccccHHHHHHHHhhhhh
Confidence 466788999999999874
No 183
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=45.51 E-value=51 Score=31.10 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=12.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAE 61 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laE 61 (333)
+-..|..+|.++..|+..|..
T Consensus 42 FRa~l~~~E~~~~~l~~~l~k 62 (407)
T 4h8s_A 42 TRSLLSVFEEDAGTLTDYTNQ 62 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566667776666665553
No 184
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=45.48 E-value=30 Score=28.08 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=22.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~ 74 (333)
+..|+..|..|+..|.++=.+=|++|..++..+.
T Consensus 4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~ 37 (106)
T 2aze_B 4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLR 37 (106)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888877777666777766665543
No 185
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=44.78 E-value=68 Score=22.92 Aligned_cols=29 Identities=21% Similarity=0.499 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 89 ADKERLSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 89 ~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
.+|-+|..+-.+|...+-.|.-++++||.
T Consensus 17 kdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 17 KDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 34444444444555555566666666653
No 186
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=44.54 E-value=44 Score=22.81 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=5.6
Q ss_pred hhhhhHHHHHHH
Q 019982 44 RVSDLESEHSAL 55 (333)
Q Consensus 44 RVs~LEsE~~~L 55 (333)
||++||..+..|
T Consensus 2 RMnQLE~kVEeL 13 (36)
T 1kd8_A 2 EVKQLEAEVEEI 13 (36)
T ss_dssp CCHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 445555444433
No 187
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=44.53 E-value=1.2e+02 Score=24.30 Aligned_cols=37 Identities=14% Similarity=0.296 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019982 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (333)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 128 (333)
.-|.+-.+.|...+++|.++++++..--+++...|++
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~ 127 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556778888999999999998888888887764
No 188
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=44.20 E-value=1.7e+02 Score=29.66 Aligned_cols=87 Identities=13% Similarity=0.144 Sum_probs=59.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH---------HHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKE---------NEALTNTV 105 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~------~rL~~a~~e~~kL~kE---------~~sLa~Tv 105 (333)
|..-|..||..+..|-+.-.+-.+.|..|+.-+...+.... .+-+..+||+.+..+| -..|.+.+
T Consensus 93 V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~~~~i~~l~~~~ 172 (461)
T 3ghg_B 93 IRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRSIL 172 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHH
Confidence 56667778888877777777777778888777776665555 2223445555554443 35677888
Q ss_pred HHHhhhHHHHHHHHHHHHhhcc
Q 019982 106 RKLQRDVSKLEVFRKTLVQSLK 127 (333)
Q Consensus 106 KKL~RDvaKLE~FKk~LmqSLq 127 (333)
.++++.|.+||.--.+++.--+
T Consensus 173 ~~~~~~i~~l~~~~~~~~~~c~ 194 (461)
T 3ghg_B 173 ENLRSKIQKLESDVSAQMEYCR 194 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhhhhhcc
Confidence 8888888888887777766543
No 189
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=43.83 E-value=2.3e+02 Score=27.72 Aligned_cols=87 Identities=16% Similarity=0.229 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH---HHHH---
Q 019982 31 DVARKITSIAISTRVSDLESEHSALRSQLAEKD-----SRIAELQSQIESIYSSLS--DKLGQAQADKER---LSKE--- 97 (333)
Q Consensus 31 dvArkIts~A~atRVs~LEsE~~~LR~~laEKd-----~~i~~Lq~rv~~le~aL~--~rL~~a~~e~~k---L~kE--- 97 (333)
+|..+|..+.-.-++..++.+...|-.++++-+ .....|-.+++.|+..+. ..+....++... |.+|
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~e~D 92 (365)
T 1gqe_A 13 DLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADD 92 (365)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 355566666666666777777777777766532 334455556666665555 444454444433 3322
Q ss_pred ---HHHHHHHHHHHhhhHHHHHH
Q 019982 98 ---NEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 98 ---~~sLa~TvKKL~RDvaKLE~ 117 (333)
+..+...++.|...+.+||.
T Consensus 93 ~e~~~~a~~e~~~l~~~l~~le~ 115 (365)
T 1gqe_A 93 EETFNEAVAELDALEEKLAQLEF 115 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 13345667788888888874
No 190
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=43.79 E-value=30 Score=22.77 Aligned_cols=20 Identities=10% Similarity=0.288 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019982 59 LAEKDSRIAELQSQIESIYS 78 (333)
Q Consensus 59 laEKd~~i~~Lq~rv~~le~ 78 (333)
++.-+...+.|+..|.+||.
T Consensus 10 vaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 10 VAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 33444455555555555554
No 191
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=43.74 E-value=74 Score=22.80 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019982 85 GQAQADKERLSKENEALTNTVRKLQRDV 112 (333)
Q Consensus 85 ~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (333)
...+.+...|.+||..|...+..|...+
T Consensus 25 ~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 25 KSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555677778888877777776554
No 192
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=43.53 E-value=2.5e+02 Score=28.22 Aligned_cols=10 Identities=10% Similarity=-0.091 Sum_probs=6.4
Q ss_pred ccccCCCCcc
Q 019982 243 LSSVHSSHSS 252 (333)
Q Consensus 243 ~~~~~ss~~s 252 (333)
-|||..=+.+
T Consensus 405 GWWy~~C~~s 414 (464)
T 1m1j_B 405 GWWYNRCHAA 414 (464)
T ss_dssp CBCCSSBCSE
T ss_pred CEeCCCCCCC
Confidence 4788765555
No 193
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=43.48 E-value=80 Score=23.09 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL 101 (333)
Q Consensus 62 Kd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sL 101 (333)
|-..+.+|+.++..|+..=. ....+...|.+|+..|
T Consensus 21 Kk~~~~~le~~~~~L~~~N~----~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNE----ALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 33445555555555553332 3333444444554444
No 194
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=43.19 E-value=55 Score=23.72 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019982 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (333)
Q Consensus 68 ~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (333)
++|.++..+|.+|+ .+.++.+....|-..|-+.=-+|--
T Consensus 4 ~~q~~i~~le~el~----~~r~e~~~q~~eYq~LlniK~~Le~ 42 (59)
T 1gk6_A 4 QLEDKVEELLSKNY----HLENEVARLKKLVGDLLNVKMALDI 42 (59)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45555666665555 4555555555555555554334443
No 195
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=43.08 E-value=1.5e+02 Score=26.75 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019982 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (333)
Q Consensus 66 i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~ 121 (333)
|.+|. ||..|=-.|..||.+++--......|+.+|..--+.|.|...-=..+|.+
T Consensus 72 igDLe-kVv~LLLsLs~RLaRvenaL~~~~~Er~sL~~K~~~L~~Q~EDAkeLKe~ 126 (190)
T 3thf_A 72 VDAVG-NITSLLLSLSERLAQTESSLETRQQERGALESKRDLLYEQMEEAQRLKSD 126 (190)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHhHHHHHHHHHccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33443 33344444446666665555566888888888777777766655555544
No 196
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=42.50 E-value=1.4e+02 Score=24.53 Aligned_cols=13 Identities=15% Similarity=-0.026 Sum_probs=7.8
Q ss_pred hhhHHHHHHHHHH
Q 019982 27 FEQLDVARKITSI 39 (333)
Q Consensus 27 yEQLdvArkIts~ 39 (333)
.++|+..+.|..+
T Consensus 43 ~~dl~~l~~I~~l 55 (142)
T 3gp4_A 43 AEDLRWILFTRQM 55 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4566666666544
No 197
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=42.37 E-value=48 Score=30.27 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 019982 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (333)
Q Consensus 61 EKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FK 119 (333)
|+.+....|+.-+.+.-.+++ ..+---++|+.|++.|-.-++||..|.+..=+|+
T Consensus 27 ~~~~~~~~~~a~~~s~~s~~~----dl~~s~~~l~ae~~~L~~~l~kLeGn~se~ITfe 81 (206)
T 3oa7_A 27 ERTEALQQLRVNYGSFVSEYN----DLTKSHNTLSKELDNLRSRFGNLEGNTSERITIK 81 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCCGGGCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHccCCHHhccCHH
Confidence 666666667666666665555 3344446699999999999999999999876665
No 198
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=42.37 E-value=2.3e+02 Score=26.96 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 55 LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (333)
Q Consensus 55 LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (333)
...+..+.+......++++.......+.+..+-.+|+++|.+|...+...+.+-
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 415 IVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhc
Confidence 333333444444444445444444444444455556666666655555554443
No 199
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=42.27 E-value=35 Score=25.19 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019982 61 EKDSRIAELQSQIESIY 77 (333)
Q Consensus 61 EKd~~i~~Lq~rv~~le 77 (333)
-|..++.+|+.+|..|+
T Consensus 27 RK~~~~~~Le~~v~~L~ 43 (63)
T 2dgc_A 27 RKLQRMKQLEDKVEELL 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666777777766443
No 200
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=42.21 E-value=95 Score=22.43 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=25.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
-..++.||+|+..+|+.++.--+...+|=.=-..||..+.
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIa 45 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIA 45 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4567888999999888877655555555443344554443
No 201
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.14 E-value=38 Score=33.29 Aligned_cols=41 Identities=12% Similarity=0.311 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019982 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 66 i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
..+|+.|+..||..+ .-|.-|++-|-+..+.|++++.+++.
T Consensus 44 ~~dl~~~lk~le~~~-----------~~L~~e~e~l~~~~~~~~~e~~~~~e 84 (428)
T 4b4t_K 44 NSDIYFKLKKLEKEY-----------ELLTLQEDYIKDEQRHLKRELKRAQE 84 (428)
T ss_dssp ----CHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444 34444444555555666666555543
No 202
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.07 E-value=19 Score=25.98 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=16.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~ 74 (333)
|..|-.|...||+++.+=...+.+|+.|+.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555555555544
No 203
>2lyc_A Spindle and kinetochore-associated protein 1 HOMO; SKA1, microtubule, SKA1-MTBD, protein binding; NMR {Caenorhabditis elegans}
Probab=41.84 E-value=11 Score=32.05 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=27.6
Q ss_pred HHHhccCHHHHHHHHHHHHHHhhccccHHHHHHhhhhhcCCCChhHHHHHH
Q 019982 275 QVRNRLSYEQFAIFLANVKELNAHKQTKEETLRKTDEVFGPENKDLYTIFE 325 (333)
Q Consensus 275 QARsRLSYEQFsaFLANIKELNAhkQTREETL~KAeeIFG~~NkdLY~~Fe 325 (333)
-.|.||+|||-++|+.. +|..-..+=..|.+...--.....++|..|.
T Consensus 21 YmrGRlTle~lN~~i~~---in~~~~~KY~il~~p~k~l~~~~~~~~~~~k 68 (130)
T 2lyc_A 21 YQLGRLTLEMMNEIVSK---MDDFLMKKSKILGKTNKQLTRSDREVLDNWR 68 (130)
T ss_dssp HHHSSCCHHHHHHHHHH---HHHHHHHHHHHTTCCTTTCCHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHH---HHHHHHHHHHHHHhHHHHcCHHHHHHHHHHH
Confidence 46899999999999864 5555444444443333222222244455544
No 204
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=41.70 E-value=1.6e+02 Score=24.76 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=18.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEK 62 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEK 62 (333)
.|-+++..||+|...|.++=.++
T Consensus 6 ~V~s~l~~LEaeyq~L~~kE~qr 28 (119)
T 2avr_X 6 SLVGELQALDAEYQNLANQEEAR 28 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999998775555
No 205
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=41.52 E-value=43 Score=22.93 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 51 EHSALRSQLAEKDSRIAELQSQIESI 76 (333)
Q Consensus 51 E~~~LR~~laEKd~~i~~Lq~rv~~l 76 (333)
|-.+|-..+..||..|+.|+++-.+|
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44567777778888888777665443
No 206
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=41.49 E-value=1.2e+02 Score=24.28 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHH
Q 019982 94 LSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 94 L~kE~~sLa~TvKKL~RDvaKLE 116 (333)
..++-+.|...+.|++.=|+.||
T Consensus 67 ~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 67 TLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444443
No 207
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=41.42 E-value=1.2e+02 Score=24.84 Aligned_cols=43 Identities=19% Similarity=0.205 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 69 LQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 69 Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
|.++++.+|..+. +...+.....+|...+--+..+|+++++.|
T Consensus 35 LKD~LEe~eE~~a----ql~Re~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 35 LKDMLLELEEQLA----ESRRQYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443 333344444455555555666666666654
No 208
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=41.30 E-value=1.1e+02 Score=28.17 Aligned_cols=53 Identities=19% Similarity=0.264 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHH
Q 019982 64 SRIAELQSQIESIYSSLSDKLGQAQADKERLSKE-NEALTNTVRKLQRDVSKLEVFRK 120 (333)
Q Consensus 64 ~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE-~~sLa~TvKKL~RDvaKLE~FKk 120 (333)
+.+.+|++++..++..+. ...++..++.++ ...|..--..|....++.++..+
T Consensus 226 ~~l~~l~~~i~~l~~~l~----~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 279 (357)
T 3rrk_A 226 KAAARMKERARLAPEELV----GIREEVARLSRESGEALIALWTRAKDEVARYKAVAD 279 (357)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555554443 444455555555 55566666666667777776654
No 209
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=40.62 E-value=1.4e+02 Score=24.06 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019982 59 LAEKDSRIAELQSQIESI 76 (333)
Q Consensus 59 laEKd~~i~~Lq~rv~~l 76 (333)
-.|.++.+.+|+.++..+
T Consensus 24 ~~e~e~~k~eL~~~~~~~ 41 (107)
T 2no2_A 24 QVDLEREKKELEDSLERI 41 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444333
No 210
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=40.31 E-value=2.1e+02 Score=25.88 Aligned_cols=73 Identities=15% Similarity=0.108 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhHHHH
Q 019982 48 LESEHSALRSQLA-EKDSRIAELQSQIESIYSSLS-----DKLGQAQADKERLSKEN------EALTNTVRKLQRDVSKL 115 (333)
Q Consensus 48 LEsE~~~LR~~la-EKd~~i~~Lq~rv~~le~aL~-----~rL~~a~~e~~kL~kE~------~sLa~TvKKL~RDvaKL 115 (333)
|+.++.+....|- =|+.+|..|+++++.-...-. .-|-.+--|+.+|.-|- -.+++.||+------..
T Consensus 82 ~D~~~~~i~~~ln~~r~~~i~~lk~~Ie~~k~~q~~~~~~~~Lf~~~kEn~al~lEa~yre~~~~v~~EvK~rLDy~v~~ 161 (214)
T 2cly_A 82 ADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHISV 161 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666665 578889999988876443222 44555566666665442 23444455433333344
Q ss_pred HHHHH
Q 019982 116 EVFRK 120 (333)
Q Consensus 116 E~FKk 120 (333)
|+..|
T Consensus 162 e~~~r 166 (214)
T 2cly_A 162 QNMMR 166 (214)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 211
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=40.00 E-value=2.3e+02 Score=26.19 Aligned_cols=95 Identities=18% Similarity=0.285 Sum_probs=43.5
Q ss_pred HhcCCCChhhhHHHHHHH------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q 019982 19 LQVLPSDPFEQLDVARKI------TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------- 81 (333)
Q Consensus 19 laVLPsDPyEQLdvArkI------ts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~----------- 81 (333)
-++||.+-|-|==+-.-| -.+|-+.--...++=-+.+|. .|-|-.+++-+.|+.+++..|.
T Consensus 28 ~sILPrNiFS~sYllyVi~qgtDvG~VA~KANeAGqgAYdAQVrN--DEQDViL~dHe~rI~a~~a~l~dHE~RIt~~~~ 105 (242)
T 3c9i_A 28 ASILPRNVFSKSYLLYVIAQGTDVGAIAGKANEAGQGAYDAQVKN--DEQDVELADHEARIKQLRIDVDDHESRITANTK 105 (242)
T ss_dssp SSSSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhHHHHHHhcccchHHHHhhhhhhhhhhhhHHHhcC--cccceeeecchhhhhhhhcccccHHHHhhhhhh
Confidence 468999977774333222 222322222222222223332 2444555555555555555554
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 82 ------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 82 ------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
-||..++.+..-|.-+-..|-.+|.-..-+++-|
T Consensus 106 ~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal 145 (242)
T 3c9i_A 106 AITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISAL 145 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhheeecccccchhhhhhhhhhcccccccccchhhh
Confidence 3444444444444444444444444444444444
No 212
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=39.98 E-value=43 Score=25.48 Aligned_cols=59 Identities=7% Similarity=0.158 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019982 55 LRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (333)
Q Consensus 55 LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (333)
+=.+|...|.+++.|.+++..||.++. .+-.... +...|-++|=.|-..+-.+-+...+
T Consensus 8 ~I~~Lk~~d~~f~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL~~~~~ 69 (76)
T 1zhc_A 8 EISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMIIEYRE 69 (76)
T ss_dssp HHHHSTTTSTTHHHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334556678888888888888888876 1111111 6667777776666666555544444
No 213
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=39.65 E-value=1.2e+02 Score=25.56 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHH-HHHHHHHHH
Q 019982 93 RLSKENEALTNTVRKLQRDVS-KLEVFRKTL 122 (333)
Q Consensus 93 kL~kE~~sLa~TvKKL~RDva-KLE~FKk~L 122 (333)
.+..+-+.|...++++.+.+- ||+.+++..
T Consensus 78 ~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~ 108 (180)
T 1s94_A 78 QMKEELEELMTDIKRTANKVRGKLKTIELNI 108 (180)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666653 455555443
No 214
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=39.60 E-value=1.5e+02 Score=29.32 Aligned_cols=41 Identities=12% Similarity=0.181 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019982 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (333)
Q Consensus 89 ~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (333)
++...|..|-..|...+|.|...+..+|.=-..++.+|-+-
T Consensus 69 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 109 (455)
T 2dq0_A 69 EPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNI 109 (455)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44566777777777777778777777777777777777654
No 215
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=39.48 E-value=60 Score=25.82 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019982 94 LSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (333)
Q Consensus 94 L~kE~~sLa~TvKKL~RDvaKLE~FKk~L 122 (333)
|..|...+-..+-...++...|=..|-.|
T Consensus 49 lE~eL~~~r~e~~~ql~EYq~LlnvKl~L 77 (95)
T 3mov_A 49 KEREMAEIRDQMQQQLNDYEQLLDVKLAL 77 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334344444444544455555444
No 216
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=39.46 E-value=1.6e+02 Score=24.22 Aligned_cols=44 Identities=9% Similarity=0.223 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 019982 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQA 89 (333)
Q Consensus 46 s~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~---~rL~~a~~ 89 (333)
..|-.|++..++++.+=...+.+|...+..||.+=. .||+..+-
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEi 53 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEI 53 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666665433 67766543
No 217
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=39.45 E-value=96 Score=30.63 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 019982 99 EALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (333)
Q Consensus 99 ~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~~ 131 (333)
..|...+|.|..++..||.--+.+-..|++--.
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEELKKKIDYYLW 104 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666665554433
No 218
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=39.44 E-value=2.2e+02 Score=28.10 Aligned_cols=31 Identities=6% Similarity=0.102 Sum_probs=16.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQS 71 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~ 71 (333)
|.+.|..||.-+..|-..-.+-..++..|+.
T Consensus 36 V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~ 66 (409)
T 1m1j_C 36 TDGELLEIEGLLQQATNSTGSIEYLIQHIKT 66 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666665555555444444444444443
No 219
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=39.43 E-value=81 Score=25.18 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 64 SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (333)
Q Consensus 64 ~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~ 103 (333)
..+.+|+..+..|..++. ...+|+..+.+|++.+-.
T Consensus 48 ~q~~~LE~e~~~L~~e~~----~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVE----QLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333 444455555555554443
No 220
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=39.33 E-value=1.6e+02 Score=28.62 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=41.6
Q ss_pred hhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-----H-HHHHHHHHHHHhh
Q 019982 44 RVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS--DKLGQAQADKERLSK-----E-NEALTNTVRKLQR 110 (333)
Q Consensus 44 RVs~LEsE~~~LR~~laEK-----d~~i~~Lq~rv~~le~aL~--~rL~~a~~e~~kL~k-----E-~~sLa~TvKKL~R 110 (333)
|+..|+.+...|-.+|++- ......|-++++.|+..+. ..+....++...|.+ | +.-+...++.|..
T Consensus 4 ~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~D~e~~~~a~~e~~~l~~ 83 (354)
T 3d5a_X 4 KLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLDDPELKEMAKAEREALLA 83 (354)
T ss_dssp HHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4455555555555555432 1333444444555544444 334444433333221 1 2234456778888
Q ss_pred hHHHHHH-HHHHHHhh
Q 019982 111 DVSKLEV-FRKTLVQS 125 (333)
Q Consensus 111 DvaKLE~-FKk~LmqS 125 (333)
.+.+||. ++.-|+-+
T Consensus 84 ~~~~le~~l~~lLlp~ 99 (354)
T 3d5a_X 84 RKEALEKELERHLLPK 99 (354)
T ss_dssp HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCCC
Confidence 8888885 66655544
No 221
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=38.95 E-value=1.6e+02 Score=24.14 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 51 EHSALRSQLAEKDSRIAELQSQIE 74 (333)
Q Consensus 51 E~~~LR~~laEKd~~i~~Lq~rv~ 74 (333)
++..|+.+|.|.++..++|+....
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re~~ 54 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQYE 54 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554444433
No 222
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=38.76 E-value=2.2e+02 Score=25.55 Aligned_cols=73 Identities=11% Similarity=0.213 Sum_probs=42.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lmq 124 (333)
+..|+.+...|..+.......+.+|.++++.+ . ++|-..|.+-+..=|--||--=+|+..+++.|.+
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~-----------v--~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~ 200 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEKA-----------V--SAKEALETDLYKRFILVLNEKKTKIRSLHNKLLN 200 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44666666666666555555555555443322 1 1333456666666666666666777777777776
Q ss_pred hccccc
Q 019982 125 SLKDDE 130 (333)
Q Consensus 125 SLqeD~ 130 (333)
..|+-+
T Consensus 201 ~~~~~~ 206 (213)
T 1ik9_A 201 AAQERE 206 (213)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 666543
No 223
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=38.73 E-value=1.4e+02 Score=23.50 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 91 KERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 91 ~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
..+|-+|+..|...++.|.....+|
T Consensus 27 L~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 27 LEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333
No 224
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=38.68 E-value=1.5e+02 Score=29.86 Aligned_cols=40 Identities=15% Similarity=0.266 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019982 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (333)
Q Consensus 89 ~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 128 (333)
++...|..|-..|...+|.|...+..+|.=-..++.+|-.
T Consensus 71 ~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN 110 (485)
T 3qne_A 71 EDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGN 110 (485)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4455677777788888888888888887777777777754
No 225
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=38.67 E-value=1.1e+02 Score=24.02 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhhhH-HHHHHHHHHHH
Q 019982 94 LSKENEALTNTVRKLQRDV-SKLEVFRKTLV 123 (333)
Q Consensus 94 L~kE~~sLa~TvKKL~RDv-aKLE~FKk~Lm 123 (333)
+.++-+.|...++++.+.+ .||+.+++..-
T Consensus 48 ~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~ 78 (127)
T 1ez3_A 48 TKEELEELMSDIKKTANKVRSKLKSIEQSIE 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555 34555555443
No 226
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=38.67 E-value=11 Score=26.79 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=14.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAE 61 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laE 61 (333)
.+-.||..||..+..|+..|+|
T Consensus 48 ~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 48 QLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3566666677776666666554
No 227
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=38.37 E-value=46 Score=22.71 Aligned_cols=28 Identities=32% Similarity=0.372 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019982 83 KLGQAQADKERLSKENEALTNTVRKLQR 110 (333)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (333)
|+.+.++..+.|..+|..|.+.|.+|..
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4455666777888888888888777654
No 228
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=38.22 E-value=1.1e+02 Score=30.93 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019982 90 DKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (333)
Q Consensus 90 e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (333)
+...|..|-..|...+|.|...+..+|.=-..++.+|-+-
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~ 156 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQ 156 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4556777777777777777777777777666777776554
No 229
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=38.17 E-value=62 Score=30.43 Aligned_cols=17 Identities=6% Similarity=0.286 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019982 64 SRIAELQSQIESIYSSL 80 (333)
Q Consensus 64 ~~i~~Lq~rv~~le~aL 80 (333)
..++.|+++...|+.++
T Consensus 185 ~eie~L~~~~~~L~eEi 201 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQI 201 (315)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555444
No 230
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=38.13 E-value=1.8e+02 Score=24.33 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=15.4
Q ss_pred HHHHHhhhhhHHHHHHHHHH
Q 019982 39 IAISTRVSDLESEHSALRSQ 58 (333)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~ 58 (333)
..|-++...||.|...|.++
T Consensus 5 ~~i~~~l~~Leae~q~L~~~ 24 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQ 24 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45678888899988888654
No 231
>2jrf_A Tubulin polymerization-promoting protein family member 3; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=38.11 E-value=23 Score=31.67 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=27.5
Q ss_pred HHHHH----hccCHHHHHHHHHHHHHHhhccccHHHHHH
Q 019982 273 FRQVR----NRLSYEQFAIFLANVKELNAHKQTKEETLR 307 (333)
Q Consensus 273 FRQAR----sRLSYEQFsaFLANIKELNAhkQTREETL~ 307 (333)
|..++ .||.||||-.+|+.|-+-+...-+.||.|.
T Consensus 59 F~KvK~k~~rkI~feqF~~aL~~lA~kk~~g~s~eE~~~ 97 (184)
T 2jrf_A 59 FSKVKGKSARVINYEEFKKALEELATKRFKGKSKEEAFD 97 (184)
T ss_dssp HHHHCCSCCSEEEHHHHHHHHHHHHHHHSTTSCHHHHHH
T ss_pred hheeccCcceeecHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 44455 579999999999888777766688888776
No 232
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=37.97 E-value=1.6e+02 Score=23.80 Aligned_cols=88 Identities=22% Similarity=0.227 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 29 QLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (333)
Q Consensus 29 QLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (333)
||.+++..-+-+.. -...|+.++.++. ...+..++++...+|.-. ..|...-+|...|....+.+.+.=.+|
T Consensus 16 qL~~~~q~~~e~e~-~k~eL~~~~~~~~------~~~~~k~~eq~~~le~lk-~eL~~~~~el~~lq~~l~~~~~~~~~l 87 (107)
T 2no2_A 16 QVSMARQAQVDLER-EKKELEDSLERIS------DQGQRKTQEQLEVLESLK-QELATSQRELQVLQGSLETSAQSEANW 87 (107)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554443322 2234444444433 333333344433333322 123333344444444444444444444
Q ss_pred hhhHHHHHHHHHHHHh
Q 019982 109 QRDVSKLEVFRKTLVQ 124 (333)
Q Consensus 109 ~RDvaKLE~FKk~Lmq 124 (333)
+-.++-|+.=|..||.
T Consensus 88 ~~~~~~l~~Ek~~L~~ 103 (107)
T 2no2_A 88 AAEFAELEKERDSLVS 103 (107)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4444555555555544
No 233
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=37.96 E-value=43 Score=22.48 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=4.4
Q ss_pred hhhhhHHHHHHH
Q 019982 44 RVSDLESEHSAL 55 (333)
Q Consensus 44 RVs~LEsE~~~L 55 (333)
||++||..+..|
T Consensus 1 RM~QLE~kVEeL 12 (33)
T 3m48_A 1 RMAQLEAKVEEL 12 (33)
T ss_dssp --CHHHHHHHHH
T ss_pred CccHHHHHHHHH
Confidence 344444444443
No 234
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=37.88 E-value=1.4e+02 Score=23.28 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 61 EKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKL 108 (333)
Q Consensus 61 EKd~~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (333)
|+.+.+..|+.-+...|..+- ++|..+.+++-.+..| |-.|..-|
T Consensus 27 ~~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~ee---LDqTL~EL 74 (77)
T 3mtu_E 27 ERTEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQM---LDQTLLEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHh
Confidence 566666666666666666655 5555666666666655 44555444
No 235
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=37.54 E-value=1.5e+02 Score=23.39 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=33.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKK 107 (333)
-|.||+||. -|+-+-.+| .++...-.+++.+|+.+...|..|..|-..|-..++-
T Consensus 16 QSALeaEIq-------AKQ~i~EEL-s~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 16 QEALEEEVL-------TRQSLSREM-EAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666654 355555555 3555554455588888888888887775555444443
No 236
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=37.52 E-value=1.8e+02 Score=24.94 Aligned_cols=53 Identities=19% Similarity=0.282 Sum_probs=37.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Q 019982 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--------DKLGQAQADK 91 (333)
Q Consensus 38 s~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~--------~rL~~a~~e~ 91 (333)
--.+..|+.+.|..++.+..-+.| ++--.++=-+++....+|. +-|..+..+.
T Consensus 51 Kk~ll~RLkRIeGQvrGI~rMIEe-dr~C~DIL~QlaAVrsAL~~v~~~ILe~Hl~~CV~~a 111 (136)
T 4adz_A 51 KAEHLKRLRRIEGQIRGLQRMVDE-DVYCIDILTQVSASTKALQSFALQLLEEHLRHCVADA 111 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999887754 5555555557777777776 5555554443
No 237
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=37.52 E-value=1.3e+02 Score=24.98 Aligned_cols=78 Identities=18% Similarity=0.199 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (333)
Q Consensus 28 EQLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKK 107 (333)
+.+.-..+=++-.|..+....|.=|..|=.- +.-.++-.+|+..|+.++. .+.++..+..+|.+.|-..|..
T Consensus 53 ~~f~~~~~ela~dli~k~kqIe~LIdsLP~~----~~see~Q~~ri~~L~~E~~----~~~~el~~~v~e~e~ll~~v~~ 124 (132)
T 1ykh_B 53 EEFSNTIDELSTDIILKTRQINKLIDSLPGV----DVSAEEQLRKIDMLQKKLV----EVEDEKIEAIKKKEKLMRHVDS 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTT----TCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333333334444555555444444311 1111122334445554444 5555666666666666666666
Q ss_pred HhhhHH
Q 019982 108 LQRDVS 113 (333)
Q Consensus 108 L~RDva 113 (333)
+-++++
T Consensus 125 ~l~~i~ 130 (132)
T 1ykh_B 125 MIEDFV 130 (132)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 666653
No 238
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=37.36 E-value=58 Score=25.30 Aligned_cols=9 Identities=33% Similarity=0.453 Sum_probs=3.4
Q ss_pred hHHHHHHHH
Q 019982 48 LESEHSALR 56 (333)
Q Consensus 48 LEsE~~~LR 56 (333)
|+.|+..++
T Consensus 19 l~~e~dn~~ 27 (86)
T 3swk_A 19 VEVERDNLA 27 (86)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 239
>2vrs_A Sigma-C capsid protein; alpha-helical coiled coil, receptor-binding, triple beta-spiral, viral protein, virion, coiled coil, beta-barrel; 1.75A {Avian reovirus} PDB: 2jjl_A 2bsf_A 2bt7_A 2bt8_A
Probab=37.10 E-value=40 Score=30.87 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 89 ADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 89 ~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
-+..+|...-.+++.+|.-|.+-|.+||
T Consensus 11 t~v~NlkssVS~~~l~ls~L~~Rv~~le 38 (211)
T 2vrs_A 11 TAISNLKSDISSNGLAITDLQDRVKSLE 38 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 3445666666677777777777777777
No 240
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=37.07 E-value=76 Score=25.54 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=23.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le 77 (333)
+..|+..|+..+..|..++.++...|..+++.+.++.
T Consensus 93 l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666666666666666666666655443
No 241
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=36.92 E-value=1.3e+02 Score=22.34 Aligned_cols=40 Identities=15% Similarity=0.374 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019982 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (333)
Q Consensus 87 a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 126 (333)
..|+.+.|.+|+..|..++-.=+|-=-+||..=|.++++.
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~~ 54 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNM 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444445555555555555554444445555555555544
No 242
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=36.83 E-value=2.6e+02 Score=27.48 Aligned_cols=10 Identities=10% Similarity=-0.024 Sum_probs=6.5
Q ss_pred ccccCCCCcc
Q 019982 243 LSSVHSSHSS 252 (333)
Q Consensus 243 ~~~~~ss~~s 252 (333)
-|||..=+.+
T Consensus 333 GWWy~~C~~s 342 (409)
T 1m1j_C 333 GWWMNRCHAG 342 (409)
T ss_dssp CBCCSSSCSE
T ss_pred CCcCCCCCCC
Confidence 4788765555
No 243
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=36.68 E-value=51 Score=24.32 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019982 82 DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (333)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (333)
+++.....+...|..||..|...|..|...|
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666677777777777777766554
No 244
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=36.63 E-value=46 Score=25.15 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHhcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 16 EEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (333)
Q Consensus 16 ~eilaVLPsDPyEQLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~l 76 (333)
+++-.+||.-|..-++=| -|...|+.- +..|+.++..|..++.+=.+.+..|+.++..|
T Consensus 22 ~~Lr~lvP~~~~~k~sK~-~iL~~Ai~Y-I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 22 HSLRDSVPSLQGEKASRA-QILDKATEY-IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHTTSGGGTTSCCCHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCCCCCCCHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 245
>1pul_A Hypothetical protein C32E8.3 in chromosome I; alpha helical, northeast structural genomics consortium, PSI, protein structure initiative; NMR {Caenorhabditis elegans} SCOP: a.39.1.11
Probab=36.29 E-value=33 Score=28.92 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=22.5
Q ss_pred hccCHHHHHHHHHHHHHHhh--ccccHHHHHH
Q 019982 278 NRLSYEQFAIFLANVKELNA--HKQTKEETLR 307 (333)
Q Consensus 278 sRLSYEQFsaFLANIKELNA--hkQTREETL~ 307 (333)
.|+.|+||-.+|.-|-+-.. .+-+.||-|.
T Consensus 79 r~I~f~qF~~aL~~lA~~k~~g~~~~~~e~l~ 110 (125)
T 1pul_A 79 KKATFDETKKVLAFVAEDRARQSKKPIQDELD 110 (125)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred ceecHHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence 47999999999988776653 3378777554
No 246
>1wlo_A SUFE protein; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; NMR {Thermus thermophilus}
Probab=36.00 E-value=20 Score=30.22 Aligned_cols=46 Identities=26% Similarity=0.356 Sum_probs=38.6
Q ss_pred CCCChHHHHhcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 019982 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAE 61 (333)
Q Consensus 11 ~f~Lp~eilaVLPsDPyEQLdvArkIts~A~atRVs~LEsE~~~LR~~laE 61 (333)
+-.=|+||+++=| |=|++|.|..-++ .+|.+.|.+=+.++|.+..+
T Consensus 87 ~G~tp~eIl~~d~-~~~~~lGL~~~LS----psR~nGl~am~~~ik~~a~~ 132 (136)
T 1wlo_A 87 EGESPEAVLEVPP-GFYRGYGLEEFFT----PLRLRGLEAALLRLQAQVRK 132 (136)
T ss_dssp TTCCTTTTTSSCT-TTTTTTTSHHHHT----HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHhCCH-HHHHHcCchhhcC----chHHHHHHHHHHHHHHHHHH
Confidence 4456899999988 7899999998777 68999999999888887654
No 247
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=35.85 E-value=47 Score=23.87 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=26.7
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHhhc
Q 019982 270 KEFFRQVRNRLSYEQFAIFLANVKELNAH 298 (333)
Q Consensus 270 KEFFRQARsRLSYEQFsaFLANIKELNAh 298 (333)
++|.+|||.--=||.-...=.|++||...
T Consensus 14 ~~~I~qAk~~rRfdEV~~L~~NL~EL~~E 42 (48)
T 3v1a_A 14 HSFIHQAKAAGRMDEVRTLQENLHQLMHE 42 (48)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999753
No 248
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=35.64 E-value=56 Score=29.65 Aligned_cols=7 Identities=14% Similarity=0.373 Sum_probs=2.9
Q ss_pred CccchHH
Q 019982 265 TRVDGKE 271 (333)
Q Consensus 265 ~rVDGKE 271 (333)
++|..+.
T Consensus 348 ~~i~~~~ 354 (412)
T 3okg_A 348 NAITKKD 354 (412)
T ss_dssp -CCCHHH
T ss_pred cccCHHH
Confidence 5555443
No 249
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=35.64 E-value=1.8e+02 Score=27.28 Aligned_cols=64 Identities=19% Similarity=0.229 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019982 59 LAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (333)
Q Consensus 59 laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lmq 124 (333)
+..+.++.+|++.|+..+|..+..+...+......|.+.+-.....+++|-+..+ .+.|...|.
T Consensus 172 lek~r~~EEea~~K~eeAd~~Y~~~V~~a~~~r~eL~~tk~~~v~~Lr~LI~e~D--~~lk~~t~~ 235 (279)
T 3qwe_A 172 QERRRRSREEAQAKAQEAEALYQACVREANARQQDLEIAKQRIVSHVRKLVFQGD--EVLRRVTLS 235 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 4457788899999999999999988888888888887777666666666655544 345554443
No 250
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=35.64 E-value=56 Score=29.64 Aligned_cols=39 Identities=10% Similarity=0.260 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHhhc
Q 019982 88 QADKERLSKENEALTNTVRKLQ----RDVSKLEVFRKTLVQSL 126 (333)
Q Consensus 88 ~~e~~kL~kE~~sLa~TvKKL~----RDvaKLE~FKk~LmqSL 126 (333)
++||.+.++--+.+-..+..|. +-+++|+.+|+.||+.+
T Consensus 365 l~eQ~~I~~~l~~~d~~i~~l~~~~~~~~~~L~~lk~~LL~k~ 407 (412)
T 3okg_A 365 LEEQRRIVAYLDQIQQQVAALKRAQAETEAELKRLEQAILDKA 407 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333333333332 25677788888887754
No 251
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=35.43 E-value=7 Score=33.86 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=41.5
Q ss_pred CCCChHHHHhcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 019982 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDS 64 (333)
Q Consensus 11 ~f~Lp~eilaVLPsDPyEQLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~ 64 (333)
+-.=|+||+++=|.|=|+||.|..-++. +|.+.|.+=+.++|.+..+.-+
T Consensus 100 ~G~tp~eIl~~d~~~f~~~lGL~~~LSp----sR~NGl~am~~~ik~~a~~~~~ 149 (155)
T 1ni7_A 100 EGKTAAELQAQSPLALFDELGLRAQLSA----SRSQGLNALSEAIIAATKQVLE 149 (155)
T ss_dssp TTCCHHHHHHSCTHHHHHHHTSSSSSCH----HHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHhCCHHHHHHHcCchhhcCc----hHHHHHHHHHHHHHHHHHHHHH
Confidence 4456999999988888999999987764 8999999999999988776543
No 252
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=35.31 E-value=1.7e+02 Score=23.34 Aligned_cols=50 Identities=22% Similarity=0.352 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019982 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (333)
Q Consensus 60 aEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (333)
.|+.+.+..|+.-+...=..+. ....--+||.-||+-|.-.--||-|.|-
T Consensus 22 serte~lqqlr~~y~s~~se~~----dlt~s~ekl~ae~~dlivsnsklfrqig 71 (97)
T 1no4_A 22 SERTEALQQLRVNYGSFVSEYN----DLTKSHEKLAAEKDDLIVSNSKLFRQIG 71 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHhccCCeeeecHHHHHHhc
Confidence 3677777888877776665554 5555668999999999999899988875
No 253
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=35.03 E-value=1.6e+02 Score=22.99 Aligned_cols=20 Identities=5% Similarity=0.142 Sum_probs=10.2
Q ss_pred HHHhhhhhHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLA 60 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~la 60 (333)
|-..|..+..++..|+..+.
T Consensus 10 F~~~v~~I~~~i~~i~~~v~ 29 (127)
T 1ez3_A 10 FFEQVEEIRGFIDKIAENVE 29 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554443
No 254
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=34.93 E-value=59 Score=26.61 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=20.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~l 76 (333)
-.|+-.||+|-=.|=.++..++-.|.+|..||.+|
T Consensus 55 h~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 55 WDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 34555566665555556666666666666665554
No 255
>1s21_A ORF2; predominantly beta-strand, chaperone; 2.00A {Pseudomonas syringae PV} SCOP: d.166.1.4
Probab=34.76 E-value=24 Score=32.23 Aligned_cols=47 Identities=26% Similarity=0.137 Sum_probs=15.5
Q ss_pred CCCCCCCCCCCCCCCCccccccCCCCCccCCccccccccCCCCccCCCCCCCCCCCC--CccchHHHHHHHHhccCHHHH
Q 019982 208 SASVSPTKTPKPVSPRRHSISFSTSRGMFDDRSSILSSVHSSHSSISSSESGSQTGK--TRVDGKEFFRQVRNRLSYEQF 285 (333)
Q Consensus 208 s~s~sP~~~s~~~sP~~~S~~~s~t~~~~~~~~~~~~~~~ss~~s~spp~~~s~~gr--~rVDGKEFFRQARsRLSYEQF 285 (333)
-+|+|...||.++||+..||+.+|+ ++..|. +.|+ .||-|+=
T Consensus 8 ~tsgs~~~ysp~~sp~~~sg~~~~~--------------------------~~~gg~~ltSV~----------qLs~~~r 51 (206)
T 1s21_A 8 NSGGVSRTYSPPTSPVYGSGVSSPS--------------------------RFVGQYTLTSIH----------QLSSEER 51 (206)
T ss_dssp -----------------------CC--------------------------TTTTCCCCCBGG----------GSCHHHH
T ss_pred CCCCCccccCCCCCcccccCCCCcc--------------------------cccCCceecchh----------hCCHHHH
Confidence 4577888899999998776664432 222333 7776 4999998
Q ss_pred HHHHH
Q 019982 286 AIFLA 290 (333)
Q Consensus 286 saFLA 290 (333)
.+||.
T Consensus 52 ~~fL~ 56 (206)
T 1s21_A 52 ENFLD 56 (206)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88886
No 256
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=34.56 E-value=2.8e+02 Score=27.87 Aligned_cols=36 Identities=11% Similarity=0.088 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCC
Q 019982 97 ENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDEDA 132 (333)
Q Consensus 97 E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~~~ 132 (333)
+...|...+|.|..++..||.=-+.+-..|++.-..
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~ 152 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALR 152 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556788888888888888888777777777665443
No 257
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=34.17 E-value=92 Score=24.43 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019982 61 EKDSRIAELQSQIESIYSSL 80 (333)
Q Consensus 61 EKd~~i~~Lq~rv~~le~aL 80 (333)
|-=.....|.++|.+++..+
T Consensus 31 eaL~EN~~Lh~~ie~~~eEi 50 (79)
T 2zxx_A 31 EALKENEKLHKEIEQKDSEI 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433
No 258
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=33.95 E-value=1.2e+02 Score=31.12 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019982 59 LAEKDSRIAELQSQIESIYSSL 80 (333)
Q Consensus 59 laEKd~~i~~Lq~rv~~le~aL 80 (333)
|.+|+..|++=+.|-+.+|.+.
T Consensus 482 l~~~~k~~~~~~~~~e~~~~~~ 503 (592)
T 1f5n_A 482 LTEKEKEIEVERVKAESAQASA 503 (592)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555443
No 259
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=33.87 E-value=79 Score=25.08 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019982 86 QAQADKERLSKENEALTNTV 105 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~Tv 105 (333)
.+++||.+|-++...|-.-+
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi 62 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEI 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555544444443333
No 260
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=33.83 E-value=1.3e+02 Score=26.20 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=28.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le 77 (333)
.-+..||.|-.+++..+..|...+.+|..+...+.
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafk 39 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQELILQQIAFK 39 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999988776554
No 261
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=33.40 E-value=93 Score=21.27 Aligned_cols=17 Identities=35% Similarity=0.335 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019982 85 GQAQADKERLSKENEAL 101 (333)
Q Consensus 85 ~~a~~e~~kL~kE~~sL 101 (333)
-.+++||+||-+|-..=
T Consensus 3 ~~~L~ENekLhk~ie~K 19 (37)
T 1t6f_A 3 YEALKENEKLHKEIEQK 19 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35677777777664433
No 262
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=33.17 E-value=26 Score=26.47 Aligned_cols=19 Identities=16% Similarity=0.385 Sum_probs=17.3
Q ss_pred ccCHHHHHHHHHHHHHHhh
Q 019982 279 RLSYEQFAIFLANVKELNA 297 (333)
Q Consensus 279 RLSYEQFsaFLANIKELNA 297 (333)
-|+.|||.+|.++|-+.++
T Consensus 43 sL~~~qw~~l~~~~~~I~~ 61 (66)
T 1pcf_A 43 SLNPEQWSQLKEQISDIDD 61 (66)
T ss_dssp EECHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHH
Confidence 4999999999999999875
No 263
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=32.68 E-value=1.3e+02 Score=24.64 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=17.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDS 64 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~ 64 (333)
|+--|..+.|.|+..||.+++|...
T Consensus 8 ~~~~~~~~~e~e~~~l~~~~~el~~ 32 (125)
T 1joc_A 8 ALLERCLKGEGEIEKLQTKVLELQR 32 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5666777788888888877665443
No 264
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=32.34 E-value=1e+02 Score=21.89 Aligned_cols=10 Identities=40% Similarity=0.394 Sum_probs=5.6
Q ss_pred hhhHHHHHHH
Q 019982 27 FEQLDVARKI 36 (333)
Q Consensus 27 yEQLdvArkI 36 (333)
.|||.||-|.
T Consensus 4 EEq~ALA~km 13 (46)
T 2rr9_C 4 EEQFALALKM 13 (46)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3676666443
No 265
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=32.19 E-value=31 Score=26.69 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019982 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (333)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (333)
.=|..++..+.+|...++-|-.-|++|.|+-.
T Consensus 36 ~LL~EsEatnarL~eq~~lLK~EIRRlERnqe 67 (71)
T 3bbp_D 36 GLLRETEATNAILMEQIKLLKSEIRRLERNQE 67 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHhhHh
Confidence 44557888888899999999999999888743
No 266
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=32.17 E-value=2.8e+02 Score=24.84 Aligned_cols=88 Identities=16% Similarity=0.242 Sum_probs=58.8
Q ss_pred CChhhh----HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 019982 24 SDPFEQ----LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQAD-KERLSKEN 98 (333)
Q Consensus 24 sDPyEQ----LdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e-~~kL~kE~ 98 (333)
+||++= ||.+--.+ .++..++..|..|..+|.....+=-..+.++-.--.++|.+|-.|....+-| +.|+-+-.
T Consensus 117 ~d~~e~i~elfd~~~~~~-~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq 195 (213)
T 1ik9_A 117 ENPAEVIRELIAYALDTI-AENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLH 195 (213)
T ss_dssp SCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 577752 45554443 2556667777777777777666656666666666677788777666666555 46666666
Q ss_pred HHHHHHHHHHhhhH
Q 019982 99 EALTNTVRKLQRDV 112 (333)
Q Consensus 99 ~sLa~TvKKL~RDv 112 (333)
+.|.+.++.+..+.
T Consensus 196 ~~Ll~~~~~~~~~~ 209 (213)
T 1ik9_A 196 NKLLNAAQEREKDI 209 (213)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhh
Confidence 68888888887765
No 267
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=32.06 E-value=70 Score=29.59 Aligned_cols=36 Identities=19% Similarity=0.151 Sum_probs=14.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le 77 (333)
-+||..+|.-++.|-..+.|=.......++++-.++
T Consensus 5 nsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne 40 (233)
T 2yko_A 5 RSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNE 40 (233)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333333333333333
No 268
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=31.97 E-value=1.9e+02 Score=22.82 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019982 60 AEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 60 aEKd~~i~~Lq~rv~~le~aL~ 81 (333)
.|=...+.+|++-+..|+.++.
T Consensus 39 ~El~~~l~el~e~l~DL~~SI~ 60 (95)
T 2c5k_T 39 EEIQDILKDVEETIVDLDRSII 60 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777777777765
No 269
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=31.65 E-value=86 Score=30.56 Aligned_cols=68 Identities=15% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHH
Q 019982 55 LRSQLAEKDSRIAELQSQ----IESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQRD-------VSKLEVFRKT 121 (333)
Q Consensus 55 LR~~laEKd~~i~~Lq~r----v~~le~aL~--~rL~~a~~e~~kL~kE~~sLa~TvKKL~RD-------vaKLE~FKk~ 121 (333)
++--....+.+.+.|+.| +..+|.-+. .+.+.+..+.+.|..|++.++..|+++.++ +++....|..
T Consensus 4 ~~~~r~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~ 83 (425)
T 2dq3_A 4 INLIREKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEE 83 (425)
T ss_dssp HHHHHHCHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHH
Q ss_pred H
Q 019982 122 L 122 (333)
Q Consensus 122 L 122 (333)
|
T Consensus 84 ~ 84 (425)
T 2dq3_A 84 I 84 (425)
T ss_dssp H
T ss_pred H
No 270
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=31.60 E-value=1.4e+02 Score=21.39 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019982 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (333)
Q Consensus 48 LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (333)
|+.++..|.+++..=+.+++.+...+..+...+. ...++......-..+|.+.|.+|.+
T Consensus 3 ~~~~~~~le~k~~~~e~iv~~l~~~v~~~~~~le----~~~~q~~~~~~~i~~Le~k~~~l~~ 61 (66)
T 3m0a_A 3 LLQRCESLEKKTATFENIVCVLNREVERVAMTAE----ACSRQHRLDQDKIEALSSKVQQLER 61 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHhhhhHHHhHHHHHHHHHHHHHH
Confidence 5666666777777666666666666665555443 2223333333334445555555544
No 271
>1wlm_A Protein CGI-38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.39.1.11
Probab=31.30 E-value=27 Score=30.19 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=24.5
Q ss_pred hccCHHHHHHHHHHHHHHhhccccHHHHHH
Q 019982 278 NRLSYEQFAIFLANVKELNAHKQTKEETLR 307 (333)
Q Consensus 278 sRLSYEQFsaFLANIKELNAhkQTREETL~ 307 (333)
.||.||||-.+|+.|-+-.....+.||.|.
T Consensus 75 rkI~f~qF~~aL~~lA~kr~kg~~~~e~~~ 104 (151)
T 1wlm_A 75 RVINYEEFKKALEELATKRFKGKSKEEAFD 104 (151)
T ss_dssp SEEEHHHHHHHHHHTHHHHSSSCCHHHHHH
T ss_pred ceecHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 359999999999987776666789998776
No 272
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=31.29 E-value=1.7e+02 Score=22.23 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 48 LESEHSALRSQLAEKDSRIAELQSQIE 74 (333)
Q Consensus 48 LEsE~~~LR~~laEKd~~i~~Lq~rv~ 74 (333)
|+.|...++..+.+.+..+..++..++
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~ 29 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQ 29 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433
No 273
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=31.11 E-value=1.3e+02 Score=29.85 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=17.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQ 72 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~r 72 (333)
|...|..||..+..|-+.-.+-.+.|..|+.-
T Consensus 36 V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~ 67 (411)
T 3ghg_C 36 VDKDLQSLEDILHQVENKTSEVKQLIKAIQLT 67 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 34455556655555555555555555555543
No 274
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=31.09 E-value=83 Score=24.98 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 019982 86 QAQADKERLSKENEALTNTVRKLQR 110 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~R 110 (333)
.|++||++|.++...+-.-+-.|..
T Consensus 35 eaL~EN~~Lh~~ie~~~eEi~~Lk~ 59 (83)
T 1wlq_A 35 EALKENEKLHKEIEQKDSEIARLRK 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777666665555444433333
No 275
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=31.00 E-value=2e+02 Score=23.27 Aligned_cols=10 Identities=30% Similarity=0.425 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 019982 62 KDSRIAELQS 71 (333)
Q Consensus 62 Kd~~i~~Lq~ 71 (333)
|...|.+|.+
T Consensus 21 kq~~id~lke 30 (94)
T 3jsv_C 21 KQELIDKLKE 30 (94)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3333333333
No 276
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=30.04 E-value=47 Score=24.81 Aligned_cols=15 Identities=40% Similarity=0.523 Sum_probs=8.3
Q ss_pred HhhhhhHHHHHHHHH
Q 019982 43 TRVSDLESEHSALRS 57 (333)
Q Consensus 43 tRVs~LEsE~~~LR~ 57 (333)
+||..||..+..|-.
T Consensus 2 srvkaleekvkalee 16 (67)
T 1lq7_A 2 SRVKALEEKVKALEE 16 (67)
T ss_dssp CSHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHH
Confidence 466666665554433
No 277
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=29.94 E-value=58 Score=27.06 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=26.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~ 78 (333)
+..|+..|+..+..|...+.++...+..++..+..+..
T Consensus 103 l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 103 LEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777777766665543
No 278
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=29.91 E-value=1.7e+02 Score=30.36 Aligned_cols=38 Identities=8% Similarity=0.199 Sum_probs=21.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~a 79 (333)
..+-..+|..+..||..+.+.++.|..|++.-+..+-.
T Consensus 12 ~~k~~ei~~~v~~lr~~~q~~e~~ik~Le~~Qe~f~~~ 49 (596)
T 1bg1_A 12 TEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFN 49 (596)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34445556666666666666666555555555544433
No 279
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=29.89 E-value=1.8e+02 Score=23.49 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 019982 91 KERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 91 ~~kL~kE~~sLa~TvKKL~ 109 (333)
+..|...+.+...+|+||.
T Consensus 69 ~~~l~~~k~~F~~~~~~~~ 87 (93)
T 3sjb_C 69 KDEIQSENKAFQAHLHKLE 87 (93)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555553
No 280
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=29.62 E-value=2.3e+02 Score=23.22 Aligned_cols=41 Identities=24% Similarity=0.407 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019982 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (333)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L 122 (333)
.++..+.+|++.|.......-..|..|...|.+|-+=-..|
T Consensus 44 ~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L 84 (104)
T 3s9g_A 44 KSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQL 84 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 44557778888888877777777788877777775544333
No 281
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=29.21 E-value=63 Score=26.45 Aligned_cols=7 Identities=14% Similarity=0.121 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 019982 71 SQIESIY 77 (333)
Q Consensus 71 ~rv~~le 77 (333)
+++..||
T Consensus 56 ~~I~~LE 62 (106)
T 1j1d_B 56 QTIYNLE 62 (106)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 282
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=29.14 E-value=96 Score=20.91 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 019982 86 QAQADKERLSKENEAL 101 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sL 101 (333)
..+.+|..|.+|...|
T Consensus 12 eLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 12 ELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHH
Confidence 3344444444444443
No 283
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=29.14 E-value=80 Score=21.17 Aligned_cols=11 Identities=27% Similarity=0.444 Sum_probs=4.6
Q ss_pred hhhhhHHHHHH
Q 019982 44 RVSDLESEHSA 54 (333)
Q Consensus 44 RVs~LEsE~~~ 54 (333)
||++||..+..
T Consensus 1 RMnQLEdKVEe 11 (33)
T 2wq1_A 1 RMKQLEDKIEE 11 (33)
T ss_dssp CHHHHHHHHHH
T ss_pred CchHHHHHHHH
Confidence 34444444333
No 284
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=28.93 E-value=2.3e+02 Score=22.96 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=8.8
Q ss_pred HHHHhhhhhHHHHH
Q 019982 40 AISTRVSDLESEHS 53 (333)
Q Consensus 40 A~atRVs~LEsE~~ 53 (333)
-+++=-+.||.|--
T Consensus 5 ~La~le~sLe~EK~ 18 (101)
T 1d7m_A 5 RLAGLENSLESEKV 18 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhc
Confidence 35566677777743
No 285
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=28.91 E-value=78 Score=26.45 Aligned_cols=77 Identities=16% Similarity=0.241 Sum_probs=49.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 019982 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (333)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~F 118 (333)
..++.++..++.|+..+-.--.+|+.....|. + |+ -|+..+.+..+|+.+.-|+|.- .-|+.....=
T Consensus 21 ~~~~kkl~~~~~el~~iekGFL~kel~~eal~-k---ld----Krik~~~E~~MK~LE~lDsl~i-----~e~~~~~R~k 87 (114)
T 1hx1_B 21 EKIADQLEELNKELTGIQQGFLPKDLQAEALC-K---LD----RRVKATIEQFMKILEEIDTLIL-----PENFKDSRLK 87 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHH-T---TH----HHHHHHHHHHHHHHHHHTTCCC-----CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccccHhHHHHHH-H---HH----HHHHHHHHHHHHHHHHhhcccC-----ChhHHHHHHH
Confidence 55666666666666666666666554433332 1 22 5667888888999888888753 5556666666
Q ss_pred HHHHHhhccc
Q 019982 119 RKTLVQSLKD 128 (333)
Q Consensus 119 Kk~LmqSLqe 128 (333)
||.|+.-+|.
T Consensus 88 RK~lV~~iQ~ 97 (114)
T 1hx1_B 88 RKGLVKKVQA 97 (114)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6777766654
No 286
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=28.82 E-value=3.5e+02 Score=24.95 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=25.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
|..||+-|=.|++.+=...+.+.+....-=+.|-..|..++
T Consensus 67 IsdklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~svq 107 (234)
T 3plt_A 67 VTDKLGVLIYELGELQDQFIDKYDQYRVTLKSIRNIEASVQ 107 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566677777777766666666655555555555565555
No 287
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=28.76 E-value=2.6e+02 Score=23.51 Aligned_cols=28 Identities=21% Similarity=0.359 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019982 91 KERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (333)
Q Consensus 91 ~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~ 121 (333)
..+|..|...|...+++ -.+++|.+||.
T Consensus 73 vqeLqgEI~~Lnq~Lq~---a~ae~erlr~~ 100 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQD---ASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHhh
Confidence 34444444444443222 23445555553
No 288
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=28.75 E-value=2.5e+02 Score=23.21 Aligned_cols=55 Identities=20% Similarity=0.255 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019982 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (333)
Q Consensus 51 E~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (333)
++..|+.++..=+..+.+||..++++-.+.+ ++..+|+..+..+..-+.+|++|-
T Consensus 46 qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq-------~qL~~Lt~~Re~V~~eL~rLQ~eN 100 (112)
T 1x79_B 46 QISALVLRAQASEILLEELQQGLSQAKRDVQ-------EQMAVLMQSREQVSEELVRLQKDN 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444444445555555544444443 334455555555555555555543
No 289
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=28.50 E-value=79 Score=26.77 Aligned_cols=25 Identities=28% Similarity=0.419 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 92 ERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
+.|.+.++.|-+-|-+|..+|.+||
T Consensus 64 eeL~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4466666667777767766666654
No 290
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=28.27 E-value=34 Score=31.37 Aligned_cols=28 Identities=11% Similarity=0.309 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVS 113 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (333)
...++..+|.+|+..+.+.+.+|.+++.
T Consensus 152 ~~~~~i~ql~~En~~le~~Ie~Lk~e~~ 179 (250)
T 2ve7_C 152 SSADKMQQLNAAHQEALMKLERLEKEVD 179 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555444444444433
No 291
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=28.14 E-value=47 Score=21.17 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 53 SALRSQLAEKDSRIAELQSQIESI 76 (333)
Q Consensus 53 ~~LR~~laEKd~~i~~Lq~rv~~l 76 (333)
++|+++-+.-...|+.|+=.+..|
T Consensus 3 rrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHh
Confidence 345554444444444444444333
No 292
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=27.98 E-value=2.5e+02 Score=27.43 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=15.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
.++..|...+..|+.-| .+..+++|+..|+..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~-----~l~~~~~r~~el~~~~~ 42 (365)
T 1gqe_A 9 NRIQDLTERSDVLRGYL-----DYDAKKERLEEVNAELE 42 (365)
T ss_dssp HHHHHHHHHHHHHHHHT-----THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHhc
Confidence 34444444444444332 13345556666665554
No 293
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=27.98 E-value=1e+02 Score=26.14 Aligned_cols=38 Identities=18% Similarity=0.388 Sum_probs=23.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~ 78 (333)
+-.|+..||.|-=.|=.++...+-.|.+|..||..|-.
T Consensus 70 Lh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~g 107 (133)
T 1j1d_C 70 LHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHc
Confidence 34556666666666666666666666666666666543
No 294
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=27.86 E-value=23 Score=30.30 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 019982 92 ERLSKENEALT 102 (333)
Q Consensus 92 ~kL~kE~~sLa 102 (333)
.+-..|+..|+
T Consensus 76 ~~~~eEKrkLA 86 (130)
T 3cl3_D 76 QAASEEKRKLA 86 (130)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 295
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=27.82 E-value=49 Score=23.82 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 019982 86 QAQADKERLSKENEALTNTVRKLQR 110 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~R 110 (333)
...++-+.|.+||..|...++.|..
T Consensus 31 ~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 31 QVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666777777777777666654
No 296
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=27.55 E-value=1.8e+02 Score=21.35 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=26.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~a 79 (333)
+...|+..-.....-+.++.|+.+.+..|++|-+.|...
T Consensus 9 v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~ 47 (63)
T 1urq_A 9 VKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSS 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666677778888888888887777665543
No 297
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=27.10 E-value=2.3e+02 Score=22.33 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 019982 65 RIAELQSQIESIYSSLS---DKLGQAQADKERLSKE 97 (333)
Q Consensus 65 ~i~~Lq~rv~~le~aL~---~rL~~a~~e~~kL~kE 97 (333)
.|.+|+-||+.+|.+=. -+|+..-+|...|++.
T Consensus 27 Ei~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~q 62 (81)
T 3qh9_A 27 ELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQ 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34556666666665432 5555555555555443
No 298
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=27.03 E-value=1.8e+02 Score=25.49 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019982 61 EKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 61 EKd~~i~~Lq~rv~~le~aL~ 81 (333)
--+.++.+|++|+..++..|+
T Consensus 73 sA~~~~d~lekKl~~aq~kL~ 93 (158)
T 3tul_A 73 TAKSVYDAATKKLTQAQNKLQ 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 346778888888888887775
No 299
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=26.81 E-value=1.4e+02 Score=21.00 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHH
Q 019982 27 FEQLDVARKITSIAISTRVSDLESEHSA 54 (333)
Q Consensus 27 yEQLdvArkIts~A~atRVs~LEsE~~~ 54 (333)
.|||.|| -|+|..|+.-..
T Consensus 7 EEq~ALA---------~rmSeQEA~~vn 25 (45)
T 3a1q_C 7 EEQFALA---------LKMSEQEAREVN 25 (45)
T ss_dssp HHHHHHH---------HHHHHHHHHHHH
T ss_pred HHHHHHH---------HHHhHHHHHHhh
Confidence 4676665 455555554433
No 300
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=26.63 E-value=1.1e+02 Score=23.23 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 53 SALRSQLAEKDSRIAELQSQIESIYSSL 80 (333)
Q Consensus 53 ~~LR~~laEKd~~i~~Lq~rv~~le~aL 80 (333)
..|...+..||..|.+|+..+..-+..+
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI 41 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEI 41 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888886665444433
No 301
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=26.43 E-value=4.2e+02 Score=25.05 Aligned_cols=18 Identities=11% Similarity=0.121 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019982 64 SRIAELQSQIESIYSSLS 81 (333)
Q Consensus 64 ~~i~~Lq~rv~~le~aL~ 81 (333)
.....||+++..++.-|+
T Consensus 397 ~~~~~~~~~~~~~~~~~~ 414 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQ 414 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHH
Confidence 344445555555554444
No 302
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=26.41 E-value=1.4e+02 Score=19.90 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=13.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 45 VSDLESEHSALRSQLAEKDSRIAELQSQIES 75 (333)
Q Consensus 45 Vs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~ 75 (333)
|+.|...++.|+.+..----.+..|.++|+.
T Consensus 3 vsalkekvsalkeqflmlmfkvsalkekvsa 33 (36)
T 3tq2_A 3 VSALKEKVSALKEQFLMLMFKVSALKEKVSA 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445554443333333444445443
No 303
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=26.14 E-value=78 Score=24.27 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=27.1
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHhhc
Q 019982 270 KEFFRQVRNRLSYEQFAIFLANVKELNAH 298 (333)
Q Consensus 270 KEFFRQARsRLSYEQFsaFLANIKELNAh 298 (333)
|-|.+|||..-=||.-.-.=.|++||+..
T Consensus 33 ~~yI~qAk~~~r~DEV~tLe~NLrEL~~e 61 (69)
T 1z0k_B 33 TSFIRQAKAAGRMDEVRTLQENLRQLQDE 61 (69)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999864
No 304
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=26.05 E-value=2.1e+02 Score=21.60 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=35.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKE 92 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~ 92 (333)
..|+..++.|+..|+.+.+.-...|.+.+.|+.+|- .|+..++-.++
T Consensus 9 ~~~Ld~i~~el~eLq~~~~~~~aki~e~krkl~eLs----HRiLkvlv~QE 55 (65)
T 3t97_B 9 QTRLDIISEDISELQKNQTTTMAKIAQYKRKLMDLS----HRTLQVLIKQE 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHH
Confidence 467888899999999999998888998888877655 45555554444
No 305
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=26.04 E-value=1.1e+02 Score=30.91 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=19.7
Q ss_pred HHH-HHHHhhhHHHHHHHHHHHHhhccc
Q 019982 102 TNT-VRKLQRDVSKLEVFRKTLVQSLKD 128 (333)
Q Consensus 102 a~T-vKKL~RDvaKLE~FKk~LmqSLqe 128 (333)
... ++.|..++..||.--+.|-..|++
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~ 136 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDK 136 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566 888999998888776666555544
No 306
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=25.92 E-value=5.4e+02 Score=26.23 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHHHH
Q 019982 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL-TNTVRKLQRDVSKLEVFRKTL 122 (333)
Q Consensus 49 EsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sL-a~TvKKL~RDvaKLE~FKk~L 122 (333)
+++++.-...|+.=....+++++.++..=.+++++=.....||+.+.+.|+.. +.-=.+|.+=-+.|+.+++.+
T Consensus 8 q~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~ 82 (497)
T 3iox_A 8 QAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDL 82 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 307
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=25.85 E-value=2e+02 Score=21.08 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019982 62 KDSRIAELQSQIESIYS 78 (333)
Q Consensus 62 Kd~~i~~Lq~rv~~le~ 78 (333)
|+.++++|+.++..+|.
T Consensus 4 ~~~~~~~le~kl~~lEn 20 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFEN 20 (65)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555544
No 308
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=25.78 E-value=1.1e+02 Score=28.18 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=15.5
Q ss_pred HHHhhhHHHHHHHHHHHHhhc
Q 019982 106 RKLQRDVSKLEVFRKTLVQSL 126 (333)
Q Consensus 106 KKL~RDvaKLE~FKk~LmqSL 126 (333)
.++.+-.+.|+.+|+.||+-+
T Consensus 184 ~~~~~~~~~l~~~k~~ll~~~ 204 (464)
T 2y7c_A 184 ARFEQIPQILKRFRQAVLGGA 204 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555677888999999875
No 309
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=25.61 E-value=89 Score=26.80 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019982 82 DKLGQAQADKERLSKENEALTNTVRKLQR 110 (333)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (333)
-+|..|.+..+||.|-|.++-.+++-.+-
T Consensus 59 kql~~Ake~~eKlkKKrsSv~gs~~~aHs 87 (136)
T 3ter_A 59 KEMKEAIEMVDRLQKKQGSVLSSLKLATG 87 (136)
T ss_dssp HHHHHHHHHHHHHHHC------CCCCCCS
T ss_pred HHHHHHHHHHHHHHHhhhchheeeeeecC
Confidence 56678889999999988888877765444
No 310
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=25.54 E-value=3.3e+02 Score=23.51 Aligned_cols=58 Identities=17% Similarity=0.282 Sum_probs=28.9
Q ss_pred HhhhhhHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 43 TRVSDLESEHSALRSQL--------------AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~l--------------aEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~T 104 (333)
+++..||.|+..+=..| ..=...|..|..++..+| .|.-.|.-...+|.++.+.|-..
T Consensus 42 ~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE----~RAE~AERsv~kLEk~id~lEd~ 113 (155)
T 2efr_A 42 GKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAE----TRAEFAERSVTKLEKSIDDLEDE 113 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666655433333 333344444444444444 33335555556666666665543
No 311
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=25.53 E-value=2.5e+02 Score=22.10 Aligned_cols=54 Identities=22% Similarity=0.382 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHH
Q 019982 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERL-SKENEALTNTVRKLQRDVSKLEV 117 (333)
Q Consensus 60 aEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL-~kE~~sLa~TvKKL~RDvaKLE~ 117 (333)
.+|...|.+++..+.+++.-|. +-.-|...+ ...|..+.+.|+.-.+||++|+.
T Consensus 34 eerk~~i~~ie~~l~EA~ell~----qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~ 88 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLE----QMDLEVREIPPQSRGMYSNRMRSYKQEMGKLET 88 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH----HHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666665554 222222222 34678888889988899888754
No 312
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=25.50 E-value=2.5e+02 Score=22.13 Aligned_cols=76 Identities=20% Similarity=0.201 Sum_probs=39.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019982 41 ISTRVSDLESEHSALRSQLAEKDSRIAEL---Q---SQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~laEKd~~i~~L---q---~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (333)
-+.-....|.|...|...+..|=..|..+ . ..+..+|..|. .|.+=..++--|-.++-.++|. .=.+|
T Consensus 13 mSelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ld----EA~eLl~qMelE~r~~p~s~R~--~~~~k 86 (102)
T 2qyw_A 13 SSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQ----EANETLAEMEEELRYAPLTFRN--PMMSK 86 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTSCHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCHHHHH--HHHHH
Confidence 34555566666666666665555544332 1 22333333322 5555455555566666555543 33466
Q ss_pred HHHHHHHH
Q 019982 115 LEVFRKTL 122 (333)
Q Consensus 115 LE~FKk~L 122 (333)
|..+|+.|
T Consensus 87 lr~Yk~dL 94 (102)
T 2qyw_A 87 LRNYRKDL 94 (102)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666665
No 313
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=25.44 E-value=39 Score=34.40 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=9.4
Q ss_pred hccccHHHHHHhhhhhcC
Q 019982 297 AHKQTKEETLRKTDEVFG 314 (333)
Q Consensus 297 AhkQTREETL~KAeeIFG 314 (333)
.-|||.-|-|..-.--=|
T Consensus 533 ~~k~t~~D~lh~en~~~G 550 (575)
T 2i1j_A 533 ETKETAMDKIHRENVRQG 550 (575)
T ss_dssp GGGCCHHHHHHHHHHHTT
T ss_pred hhhcchhHHHHHHhhhcC
Confidence 346666666654443444
No 314
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.35 E-value=1.6e+02 Score=24.17 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 53 SALRSQLAEKDSRIAELQSQIESIYSS 79 (333)
Q Consensus 53 ~~LR~~laEKd~~i~~Lq~rv~~le~a 79 (333)
..|.+.|++....|.+|...+..|...
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~ 33 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGT 33 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666655554433
No 315
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=25.27 E-value=2.5e+02 Score=22.18 Aligned_cols=15 Identities=20% Similarity=0.102 Sum_probs=9.4
Q ss_pred HHHHHHHhhhhhHHH
Q 019982 37 TSIAISTRVSDLESE 51 (333)
Q Consensus 37 ts~A~atRVs~LEsE 51 (333)
..-|+..|-...|.+
T Consensus 18 aggaFgKrEaA~Ee~ 32 (84)
T 1gmj_A 18 AGGAFGKREQAEEER 32 (84)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred cCCCcccHHHHhHHH
Confidence 345666777777776
No 316
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=25.16 E-value=19 Score=30.56 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=37.7
Q ss_pred CCCChHHHHhcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 019982 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLA 60 (333)
Q Consensus 11 ~f~Lp~eilaVLPsDPyEQLdvArkIts~A~atRVs~LEsE~~~LR~~la 60 (333)
+-.=|+||+++=|.|=|++|.|..-++ .+|.+.|.+=+.++|....
T Consensus 93 ~G~tp~eIl~~d~~~f~~~lGL~~~LS----psR~nGl~am~~~ik~~a~ 138 (141)
T 3g0m_A 93 HQMTAQDIVHFDVRPWFEKMALAQHLT----PSRSQGLEAMIRAIRAKAA 138 (141)
T ss_dssp TTCBHHHHHHCCCHHHHHHHTCGGGSC----HHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHhCCHHHHHHHcCchhhcC----chHHHHHHHHHHHHHHHHH
Confidence 345699999997778899999987775 6899999999999887653
No 317
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=25.10 E-value=1e+02 Score=20.83 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=5.0
Q ss_pred hhhhhHHHHHHH
Q 019982 44 RVSDLESEHSAL 55 (333)
Q Consensus 44 RVs~LEsE~~~L 55 (333)
||++||..+..|
T Consensus 2 RM~QLEdKVEeL 13 (34)
T 1uo4_A 2 RMKQIEDKGEEI 13 (34)
T ss_dssp -CHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 445555444433
No 318
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.02 E-value=2.8e+02 Score=22.57 Aligned_cols=86 Identities=22% Similarity=0.307 Sum_probs=46.0
Q ss_pred HHHHHHHHHH--HHHHhhhhhHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH----
Q 019982 30 LDVARKITSI--AISTRVSDLESEH---------SALRSQLAEKDSRIAELQSQIESIYSSLSDKL----GQAQAD---- 90 (333)
Q Consensus 30 LdvArkIts~--A~atRVs~LEsE~---------~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL----~~a~~e---- 90 (333)
-+|...|.+. -|-+-|+.|+.-+ ..||.+|.+.-+.+.+|=+.++..=..|. .+ ....+.
T Consensus 13 ~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~-~~~~~~~~~~~r~~k~ 91 (130)
T 2dnx_A 13 SSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELG-SLPLPLSTSEQRQQRL 91 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSCCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccchHHHHHH
Confidence 3466666554 2455688888775 56777777776666666555554333332 11 011112
Q ss_pred -HHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 91 -KERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 91 -~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
.+||.+|=....+.-.+++|.++.-|
T Consensus 92 q~~KL~~dF~~~L~~FQ~~Qr~~aeke 118 (130)
T 2dnx_A 92 QKERLMNDFSAALNNFQAVQRRVSEKE 118 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555565555544
No 319
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=25.00 E-value=2e+02 Score=20.83 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 47 ~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
.||+|+.+|+..+.+=.+.+.+|-.=+..|-.+++
T Consensus 1 ~le~~I~~Lk~ai~~TNeAV~~L~~g~~~la~Av~ 35 (51)
T 3kpe_A 1 HLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVL 35 (51)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999998888888887777766664
No 320
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=25.00 E-value=1.4e+02 Score=25.42 Aligned_cols=66 Identities=27% Similarity=0.390 Sum_probs=28.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~-~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (333)
++.-+++.+|+|...|++++. -.|..|+=++.++|.+|. .|-. +.+|+.||+ .|-..-.+|-.|..
T Consensus 34 ~~e~~~~~~~~Elee~kqq~~---~~~d~L~lQ~esmeaalkmEr~~-~~eEKrkLA----qLQ~AY~~LfqeYd 100 (130)
T 3cl3_D 34 AASEQARQLESEREALQQQHS---VQVDQLRMQGQSVEAALRMERQA-ASEEKRKLA----QLQVAYHQLFQEYD 100 (130)
T ss_dssp -----------------CTTT---HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----HHHHHHHHHHHHHH
Confidence 444556666666666665442 345566777888888887 4332 445666654 34445555555544
No 321
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=24.87 E-value=2.5e+02 Score=22.36 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019982 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (333)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L 122 (333)
..+..+-+.....+.+|.-++-|++.+=-.|
T Consensus 58 ~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 58 ASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446666777777888888888888775544
No 322
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=24.76 E-value=2.5e+02 Score=25.10 Aligned_cols=10 Identities=10% Similarity=0.262 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 019982 50 SEHSALRSQL 59 (333)
Q Consensus 50 sE~~~LR~~l 59 (333)
.++..++.+|
T Consensus 69 ~~~~~~~a~l 78 (341)
T 3fpp_A 69 NQIKEVEATL 78 (341)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 323
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=24.71 E-value=3.4e+02 Score=23.44 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhccccc
Q 019982 98 NEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (333)
Q Consensus 98 ~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~ 130 (333)
.+.....|.++|+--.+++.-...++..||+-+
T Consensus 176 ~~~Y~~~v~~~n~~~~~~~~~~~~~~~~lQ~le 208 (276)
T 2v0o_A 176 TDTYKLYVEKYALAKADFEQKMTETAQKFQDIE 208 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666555555544445555554433
No 324
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=24.71 E-value=1.3e+02 Score=28.41 Aligned_cols=39 Identities=15% Similarity=0.388 Sum_probs=35.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
.|+..|...+..++.++-..|+.++++-.++-.||..++
T Consensus 216 ~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~ 254 (268)
T 2yo3_A 216 QKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIA 254 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999998886
No 325
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=24.59 E-value=3e+02 Score=22.74 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHH
Q 019982 66 IAELQSQIESIYSSLS---DKLGQAQAD 90 (333)
Q Consensus 66 i~~Lq~rv~~le~aL~---~rL~~a~~e 90 (333)
|.+||+-+...|.+|. -||+.|++.
T Consensus 37 ieeLQ~Ei~~~E~QL~iArQKLkdAe~~ 64 (107)
T 2k48_A 37 LQELQENITAHEQQLVTARQKLKDAEKA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666 455555543
No 326
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=24.41 E-value=1.1e+02 Score=22.03 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=19.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 44 RVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
=++.||.+-..||.+|- ++|+++++..|+
T Consensus 14 ~l~~LEkqF~~LkEqlY---------~ERl~ql~~~Le 42 (49)
T 2xus_A 14 EMLDLEKQFSELKEKLF---------RERLSQLRLRLE 42 (49)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH
Confidence 35678888888888775 356666665554
No 327
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=24.39 E-value=2.1e+02 Score=23.01 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019982 51 EHSALRSQLAEKDSRIAEL 69 (333)
Q Consensus 51 E~~~LR~~laEKd~~i~~L 69 (333)
++..||.++.+=|+.|-+|
T Consensus 13 ~L~~lR~~ID~ID~~il~L 31 (114)
T 3rmi_A 13 ELAYLRQSIDNFDITLIHI 31 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544443
No 328
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=24.29 E-value=1.1e+02 Score=30.06 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhhHHHHHH-HHHHHH
Q 019982 100 ALTNTVRKLQRDVSKLEV-FRKTLV 123 (333)
Q Consensus 100 sLa~TvKKL~RDvaKLE~-FKk~Lm 123 (333)
-+...++.|...+.+||. ++.-|+
T Consensus 91 ~a~~e~~~l~~~l~~le~~l~~lLl 115 (371)
T 1zbt_A 91 MAKEELKNSKVAKEEYEEKLRFLLL 115 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345567788888888875 554443
No 329
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=24.23 E-value=1.6e+02 Score=22.79 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 019982 66 IAELQSQIESIYSSLS 81 (333)
Q Consensus 66 i~~Lq~rv~~le~aL~ 81 (333)
+.+|++++..+|.+|.
T Consensus 14 L~~lR~~ID~iD~~Ll 29 (90)
T 2vkl_A 14 IDTLREEIDRLDAEIL 29 (90)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555556665555554
No 330
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=24.10 E-value=1.1e+02 Score=22.60 Aligned_cols=47 Identities=19% Similarity=0.318 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019982 66 IAELQSQIESIYSSLS-DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (333)
Q Consensus 66 i~~Lq~rv~~le~aL~-~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk 120 (333)
..||++++.+|..+|- -|+..+... | ||- ..++...||+|++.+.-+
T Consensus 11 ~~EL~~~l~elk~ELf~LR~q~atgq---l--~n~---~~ir~vRr~IARi~Tvl~ 58 (66)
T 1r73_A 11 DEELKNLLEEKKRQLMELRFQLAMGQ---L--KNT---SLIKLTKRDIARIKTILR 58 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---C--CCH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC---c--cCc---HHHHHHHHHHHHHHHHHH
Confidence 4567777777776665 444444421 1 221 246777889999877644
No 331
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=23.91 E-value=52 Score=26.79 Aligned_cols=55 Identities=13% Similarity=0.299 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 49 ESEHSALRSQLAEKD---SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (333)
Q Consensus 49 EsE~~~LR~~laEKd---~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKK 107 (333)
..++..|++.++.+. ..|.-|+.++.-....+. .=..+-++|..|+..|...+-.
T Consensus 37 Q~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~----aERaaREk~~~EKe~L~~ql~~ 94 (96)
T 3fx0_A 37 QEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ----AERQAREKLAEKKELLQEQLEQ 94 (96)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHTSSTTSCC------
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHHHh
Confidence 445566666666555 455556655555444443 3344456666666666655443
No 332
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=23.77 E-value=39 Score=30.81 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRD 111 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RD 111 (333)
...+||++|.+|+..|.....+|..-
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~~~~~l 48 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLESEVADL 48 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666665555444444333
No 333
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=23.67 E-value=3.2e+02 Score=26.52 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019982 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (333)
Q Consensus 89 ~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (333)
++...|..|-..|...+|.|...+..+|.=-..++.+|-+-
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 104 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLP 104 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44556677777777777777777777777666777776554
No 334
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=23.63 E-value=99 Score=25.55 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (333)
...+...+|.+|+..|...+++|.+.++..+
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666676666666777777666653
No 335
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=23.37 E-value=3e+02 Score=26.61 Aligned_cols=20 Identities=5% Similarity=-0.011 Sum_probs=9.4
Q ss_pred HHHHHhhhhhHHHHHHHHHH
Q 019982 39 IAISTRVSDLESEHSALRSQ 58 (333)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~ 58 (333)
.+++.++..+-..+..+|..
T Consensus 74 ~~La~~~n~~~~~L~~~~~~ 93 (463)
T 2d4y_A 74 EGLVNQFKTTDQYLRDQDKQ 93 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444554444444444443
No 336
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=23.17 E-value=2e+02 Score=22.18 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019982 90 DKERLSKENEALTNTVRKL 108 (333)
Q Consensus 90 e~~kL~kE~~sLa~TvKKL 108 (333)
+.+.|..++..|-..+..|
T Consensus 67 ~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 67 EEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344555555555444443
No 337
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=23.15 E-value=5.8e+02 Score=25.57 Aligned_cols=88 Identities=14% Similarity=0.189 Sum_probs=48.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHH--HH-HHHHHHHH----HHH-HHH
Q 019982 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS-------------SLSDKL--GQ-AQADKERL----SKE-NEA 100 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~-------------aL~~rL--~~-a~~e~~kL----~kE-~~s 100 (333)
.-+|-.|..+-+.|..++.+-.+....+.++|..+-. .+..++ .. .-++...| .+| -..
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 115 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKD 115 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhhHHHhhHHHHHHHHHH
Confidence 3455555555555555555544444444444443221 000000 00 22445566 667 889
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019982 101 LTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (333)
Q Consensus 101 La~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (333)
|...+|.|...+..||.=-..++.+|-+-
T Consensus 116 l~~~i~~le~~~~~~~~~~~~~l~~iPN~ 144 (484)
T 3lss_A 116 LSDQVAGLAKEAQQLEEERDKLMLNVGNI 144 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999888899888654
No 338
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=23.12 E-value=2.5e+02 Score=22.24 Aligned_cols=37 Identities=30% Similarity=0.327 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 58 QLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTV 105 (333)
Q Consensus 58 ~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~Tv 105 (333)
.|.|-=..+..|.++|..|+ +|++.|.+||..|.+.+
T Consensus 40 AL~eaL~EN~~Lh~~ie~l~-----------eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 40 ALYEALKENEKLHKEIEQKD-----------NEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Confidence 34444445556666655444 44555555555554444
No 339
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=23.09 E-value=1.4e+02 Score=23.14 Aligned_cols=34 Identities=15% Similarity=0.484 Sum_probs=18.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (333)
Q Consensus 43 tRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~l 76 (333)
..|..||..++.+++....-.--|.+||.+|..|
T Consensus 8 nsVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL 41 (74)
T 1avy_A 8 NKIKAIETDIASVRQEVNTAKGNISSLQGDVQAL 41 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhcccccchhhhheeeccccchhhhhhhhhHHH
Confidence 3566777777777766543333344444444333
No 340
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=23.03 E-value=1.1e+02 Score=27.68 Aligned_cols=19 Identities=11% Similarity=0.074 Sum_probs=9.1
Q ss_pred HHHHHhhhHHHHHHHHHHH
Q 019982 104 TVRKLQRDVSKLEVFRKTL 122 (333)
Q Consensus 104 TvKKL~RDvaKLE~FKk~L 122 (333)
.+|-|.+++-+...-+..|
T Consensus 55 ~arilAkelVR~Rk~~~rl 73 (218)
T 3frt_A 55 VCIVLAKEMIRSRKAVSKL 73 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555544444444
No 341
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=22.85 E-value=1.1e+02 Score=22.21 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=26.8
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHhhc
Q 019982 270 KEFFRQVRNRLSYEQFAIFLANVKELNAH 298 (333)
Q Consensus 270 KEFFRQARsRLSYEQFsaFLANIKELNAh 298 (333)
+-|.+|||..-=||.-.-.=.|++||+..
T Consensus 15 ~~~I~qAk~~~r~DEV~~Le~NLrEL~~e 43 (51)
T 1yzm_A 15 TSFIRQAKAAGRMDEVRTLQENLRQLQDE 43 (51)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 56999999999999999999999999865
No 342
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=22.81 E-value=76 Score=22.60 Aligned_cols=18 Identities=11% Similarity=0.357 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019982 64 SRIAELQSQIESIYSSLS 81 (333)
Q Consensus 64 ~~i~~Lq~rv~~le~aL~ 81 (333)
..|.+|+++|..||..|.
T Consensus 49 ~~~~~Le~ri~~Le~~l~ 66 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLT 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556666666665553
No 343
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=22.79 E-value=2e+02 Score=27.98 Aligned_cols=8 Identities=25% Similarity=0.380 Sum_probs=5.0
Q ss_pred ChhhhHHH
Q 019982 25 DPFEQLDV 32 (333)
Q Consensus 25 DPyEQLdv 32 (333)
+|-.++.+
T Consensus 162 ~~~~rr~~ 169 (517)
T 4ad8_A 162 SPANQRGL 169 (517)
T ss_dssp SHHHHHHH
T ss_pred CHHHHHHH
Confidence 67766554
No 344
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=22.75 E-value=1.4e+02 Score=27.96 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 70 QSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (333)
Q Consensus 70 q~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa 102 (333)
++.++.|+...+ ...+|.++|.+++.++.
T Consensus 184 ~~eie~L~~~~~----~L~eEi~~Le~~~e~~~ 212 (315)
T 2ve7_A 184 AFKLESLEAKNR----ALNEQIARLEQERSTAN 212 (315)
T ss_dssp TTHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHhhh
Confidence 334444444443 44444445544443333
No 345
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=22.49 E-value=4e+02 Score=23.42 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 019982 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FK 119 (333)
...++...|.+++..|...+..|....+|++.|-
T Consensus 60 ~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~ 93 (174)
T 2p22_A 60 HLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFS 93 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666666666553
No 346
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=22.39 E-value=1.3e+02 Score=27.54 Aligned_cols=20 Identities=0% Similarity=0.305 Sum_probs=15.5
Q ss_pred HHhhhHHHHHHHHHHHHhhc
Q 019982 107 KLQRDVSKLEVFRKTLVQSL 126 (333)
Q Consensus 107 KL~RDvaKLE~FKk~LmqSL 126 (333)
++++-+.+|+.+|+.||+-+
T Consensus 398 ~~~~~~~~l~~lk~sLL~~a 417 (464)
T 2y7c_A 398 QVNNALARVNNLTQSILAKA 417 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555778999999999876
No 347
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=22.30 E-value=3.4e+02 Score=22.55 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=18.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (333)
Q Consensus 40 A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~ 78 (333)
.+...-..|..+...|...+........+|+.++..|+.
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~ 64 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALED 64 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444445555555544444444444455555444443
No 348
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=22.26 E-value=3.3e+02 Score=22.47 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHh
Q 019982 94 LSKENEALTNTVRKLQRDVSK-LEVFRKTLVQ 124 (333)
Q Consensus 94 L~kE~~sLa~TvKKL~RDvaK-LE~FKk~Lmq 124 (333)
...++..|...+||+.|-|.| ++.++..+|+
T Consensus 72 ~~ek~~~le~k~Kk~~~kV~Kl~~dl~~rI~~ 103 (109)
T 2fcw_A 72 SREKHALLEGRTKELGYTVKKHLQDLSGRISR 103 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345577888888888888888 4566666665
No 349
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=22.17 E-value=5.3e+02 Score=26.64 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=26.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 36 ITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (333)
Q Consensus 36 Its~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~ 81 (333)
|.+.++..+-..+|..+..||....+.++.+..|++.-+.++-.++
T Consensus 5 ~~~~~~~~~~~eI~~~v~~l~~~~q~~e~~~k~Le~~Qe~F~~~y~ 50 (585)
T 1y1u_A 5 VLVDAMSQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQ 50 (585)
T ss_dssp ------CCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3444555666667777777777777777777766665555555444
No 350
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=22.09 E-value=1.3e+02 Score=20.29 Aligned_cols=6 Identities=17% Similarity=0.562 Sum_probs=2.4
Q ss_pred hhhhHH
Q 019982 45 VSDLES 50 (333)
Q Consensus 45 Vs~LEs 50 (333)
|++||.
T Consensus 3 MnQLEd 8 (34)
T 3c3f_A 3 MXQIEX 8 (34)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334433
No 351
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=22.05 E-value=2.9e+02 Score=21.61 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019982 86 QAQADKERLSKENEALTNTVRKL 108 (333)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL 108 (333)
.|++||.+|-++-..+-.-+.+|
T Consensus 31 eaL~EN~~Lh~~ie~~~eEi~~L 53 (79)
T 2zxx_A 31 EALKENEKLHKEIEQKDSEIARL 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555554444444433333
No 352
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=21.99 E-value=1.9e+02 Score=21.81 Aligned_cols=16 Identities=13% Similarity=0.399 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 019982 66 IAELQSQIESIYSSLS 81 (333)
Q Consensus 66 i~~Lq~rv~~le~aL~ 81 (333)
+.+|+.++..+|.+|.
T Consensus 5 L~~lR~~ID~iD~~l~ 20 (90)
T 2d8d_A 5 IQALRKEVDRVNREIL 20 (90)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555666665555554
No 353
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=21.80 E-value=2.2e+02 Score=24.09 Aligned_cols=51 Identities=25% Similarity=0.419 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHH
Q 019982 65 RIAELQSQIESIYSSLS--------DKLGQAQADKERLSKENEALTN-TVRKLQRDVSKL 115 (333)
Q Consensus 65 ~i~~Lq~rv~~le~aL~--------~rL~~a~~e~~kL~kE~~sLa~-TvKKL~RDvaKL 115 (333)
+|..|..|+..+.+.|. ..+.+.++|.++|.+|-.+|-. ...+|+..-.+|
T Consensus 11 Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~lske~~~l 70 (123)
T 2lf0_A 11 EIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQKL 70 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34555555555555554 5667777888888888777754 344555444444
No 354
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=21.70 E-value=2.2e+02 Score=23.83 Aligned_cols=47 Identities=9% Similarity=0.266 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019982 66 IAELQSQIESIYSSLS-DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (333)
Q Consensus 66 i~~Lq~rv~~le~aL~-~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk 120 (333)
.+||.+++.+|..+|- -|+..+.... ||- ..++..-||+|++.+.-+
T Consensus 16 ~eEL~~~L~eLK~ELf~LRfq~atgql-----en~---~rIr~vRRdIARi~Tvl~ 63 (124)
T 3iz5_c 16 KDDLTKQLAELKTELGQLRIQKVASSG-----SKL---NRIHDIRKSIARVLTVIN 63 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCH-----HHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc-----cch---HHHHHHHHHHHHHHHHHH
Confidence 3567777777777776 4444554422 222 246777789999866543
No 355
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=21.55 E-value=2.7e+02 Score=21.14 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019982 91 KERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (333)
Q Consensus 91 ~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~ 121 (333)
...|-.|-..+-..+-...++...|=..|-.
T Consensus 35 i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~ 65 (84)
T 1gk4_A 35 IGRLQDEIQNMKEEMARHLREYQDLLNVKMA 65 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444444444444443
No 356
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=21.49 E-value=1.7e+02 Score=20.59 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 019982 59 LAEKDSRIAELQSQIESIYSSLS--DKLGQAQ 88 (333)
Q Consensus 59 laEKd~~i~~Lq~rv~~le~aL~--~rL~~a~ 88 (333)
.+||++.|..|++.+-.-|.-|. -||+++.
T Consensus 3 ~~ere~~i~~LreeLR~EEaKLvLLKKlrqSQ 34 (43)
T 2l2l_A 3 PEERERMIKQLKEELRLEEAKLVLLKKLRQSQ 34 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999988777776666 5555543
No 357
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=21.43 E-value=82 Score=35.07 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHhhcccc
Q 019982 87 AQADKERLSKENEALTNTVRKLQRDV------SKLEVFRKTLVQSLKDD 129 (333)
Q Consensus 87 a~~e~~kL~kE~~sLa~TvKKL~RDv------aKLE~FKk~LmqSLqeD 129 (333)
..+|.+||.+|.+.|...++.|..-. .-|+.|++.+-.-+.+|
T Consensus 1125 T~ee~ekL~~E~~e~~~ei~~L~~~s~~~lw~~DLd~~~~~~~~~~~~~ 1173 (1177)
T 4gfh_A 1125 TKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRD 1173 (1177)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677889999988888888776432 23677777775555444
No 358
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=21.31 E-value=6e+02 Score=25.03 Aligned_cols=73 Identities=11% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--------------HHH
Q 019982 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK--------------LEV 117 (333)
Q Consensus 52 ~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK--------------LE~ 117 (333)
..-|.....|=+.++.+|++.+...+.-.. .+..-..+...+.+.|.+.+++|....-| |+.
T Consensus 237 leVv~~Da~EL~~V~~eL~~~~~~i~~~~~----~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~e~l~i~~~i~e~l~~ 312 (413)
T 4hpq_C 237 FEIVERDDKDLAAINSLLQDAAIDVASFVR----KVNMLLDERDADKAKMQATLSKLLTELRKHEEYISVFEGISALIQK 312 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcchhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhccc
Q 019982 118 FRKTLVQSLKD 128 (333)
Q Consensus 118 FKk~LmqSLqe 128 (333)
||-++..-+++
T Consensus 313 fk~~~~~~~~~ 323 (413)
T 4hpq_C 313 FKASCLEDIRQ 323 (413)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
No 359
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=21.22 E-value=1.9e+02 Score=21.97 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019982 59 LAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (333)
Q Consensus 59 laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (333)
|..--+.|..|+++.. ...+++++|.+|+..|-..+..|
T Consensus 42 L~kA~~yI~~L~~~~~-----------~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 42 LTKAKLHIKKLEDSDR-----------KAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhhC
No 360
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=21.07 E-value=1.1e+02 Score=25.34 Aligned_cols=8 Identities=0% Similarity=0.376 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 019982 70 QSQIESIY 77 (333)
Q Consensus 70 q~rv~~le 77 (333)
+.+|..++
T Consensus 13 ~~~i~~l~ 20 (122)
T 3viq_A 13 EKEVRNLQ 20 (122)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 361
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=21.05 E-value=2e+02 Score=22.40 Aligned_cols=16 Identities=19% Similarity=0.356 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 019982 66 IAELQSQIESIYSSLS 81 (333)
Q Consensus 66 i~~Lq~rv~~le~aL~ 81 (333)
+.+|+.++..+|.+|.
T Consensus 19 L~~lR~~ID~ID~~Ll 34 (91)
T 1ybz_A 19 LKLLRKEIDKIDNQII 34 (91)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555544
No 362
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=20.89 E-value=9.2 Score=31.54 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=16.5
Q ss_pred CCCCChHHHHhcCCCChhhhH
Q 019982 10 STFDLPEEVLQVLPSDPFEQL 30 (333)
Q Consensus 10 ~~f~Lp~eilaVLPsDPyEQL 30 (333)
.-..|+|+-|--||.+=+-++
T Consensus 4 ~~~~~sd~~Lv~m~v~elN~~ 24 (107)
T 3a5t_A 4 MGTSLTDEELVTMSVRELNQH 24 (107)
T ss_dssp CCCCCCHHHHHHSCHHHHHHT
T ss_pred CCCCCCHHHHhcCCHHHHHHH
Confidence 356789999999998877665
No 363
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=20.85 E-value=5e+02 Score=26.50 Aligned_cols=14 Identities=14% Similarity=0.415 Sum_probs=7.7
Q ss_pred HHHHHHHhhhHHHH
Q 019982 102 TNTVRKLQRDVSKL 115 (333)
Q Consensus 102 a~TvKKL~RDvaKL 115 (333)
.+.++.|+..+..|
T Consensus 566 ~~~~~~~~~ei~~l 579 (592)
T 1f5n_A 566 QKESRIMKNEIQDL 579 (592)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555566555554
No 364
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=20.77 E-value=2.5e+02 Score=22.84 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019982 82 DKLGQAQADKERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (333)
.+|..|.+..+||.|-|.++-.+++-.+
T Consensus 28 kql~~A~e~~eKl~KKrsS~~gs~~~ah 55 (101)
T 3teq_A 28 KQLMVAKEGAEKIKKKRNTLFGTFHVAH 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhchheeeehhc
Confidence 4455999999999999999998887554
No 365
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.70 E-value=3.9e+02 Score=22.70 Aligned_cols=95 Identities=13% Similarity=0.199 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 019982 29 QLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSKENEALTNT 104 (333)
Q Consensus 29 QLdvArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~----~rL~~a~~e~~kL~kE~~sLa~T 104 (333)
||+..+.= -.++.+.++..+.|+.+|...|.+=...-.+.+.....++..|- +=...|....+.-.+++..+-.-
T Consensus 26 ~le~l~~~-l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r 104 (135)
T 2e7s_A 26 NYNQLKED-YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEIL 104 (135)
T ss_dssp HHHHHHHH-HHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444432 23444778889999999999888554444444445555554443 11123333333333444444444
Q ss_pred HHHHhhhHHHHHHHHHHHHhhccc
Q 019982 105 VRKLQRDVSKLEVFRKTLVQSLKD 128 (333)
Q Consensus 105 vKKL~RDvaKLE~FKk~LmqSLqe 128 (333)
+.+|.+.+.- |..|+.+||+
T Consensus 105 ~~~L~~ql~e----~e~ll~~lq~ 124 (135)
T 2e7s_A 105 NKRLTEQLRE----KDMLLDTLTL 124 (135)
T ss_dssp HHHHHHTTTH----HHHCC-----
T ss_pred HHHHHHHHHH----HHHHHHHHHH
Confidence 4444443332 3444455443
No 366
>3rrr_B Fusion glycoprotein F0; six-helix bundle, membrane fusion, viral protein; HET: NAG; 2.82A {Human respiratory syncytial virus} PDB: 3rrt_B
Probab=20.68 E-value=5.1e+02 Score=25.53 Aligned_cols=62 Identities=19% Similarity=0.280 Sum_probs=47.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019982 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (333)
Q Consensus 44 RVs~LEsE~~~LR~~laEKd~~i~~Lq~rv~~le~aL~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (333)
+....+.++.+||..+.+=.+.|.+|+.=+..+=.+++ ++|+.. |+.|.-++.+|..+++-+
T Consensus 10 ~a~~Na~~I~~Lk~si~~TN~AV~~l~~~~~~~~~Av~-----~lQd~I-----N~~i~Pain~l~C~v~~~ 71 (374)
T 3rrr_B 10 KVLHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVL-----DLKNYI-----DKQLLPIVNKQSCSISNI 71 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH-----HHTHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH-----HHhhhhhhhhcchHhHHh
Confidence 56678999999999999999999999998888877775 444432 456666777777777654
No 367
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=20.53 E-value=2.5e+02 Score=23.28 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=16.6
Q ss_pred HHHhhhhhHHHHHHHHHHHH
Q 019982 41 ISTRVSDLESEHSALRSQLA 60 (333)
Q Consensus 41 ~atRVs~LEsE~~~LR~~la 60 (333)
++.++.+|+-|-..||++|-
T Consensus 13 LaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 13 MVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35788999999999999986
No 368
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=20.52 E-value=3.1e+02 Score=21.42 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 019982 33 ARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAEL 69 (333)
Q Consensus 33 ArkIts~A~atRVs~LEsE~~~LR~~laEKd~~i~~L 69 (333)
.|++-+.|=-.=+..||.=..+|+.-+.||....+..
T Consensus 14 iR~LRA~arel~le~Lee~leKl~~VveERree~~~~ 50 (86)
T 3nr7_A 14 IRTLRAQARESTLETLEEMLEKLEVVVNERREEESAA 50 (86)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555555555555444433
No 369
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=20.41 E-value=3.6e+02 Score=22.13 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019982 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (333)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (333)
.-|.+-.+.|...+++|..++++++.--+++...|++-
T Consensus 101 ~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 101 SFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555567777888888888888887777776666543
No 370
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=20.30 E-value=1.3e+02 Score=27.06 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019982 82 DKLGQAQADKERLSKENEALTN 103 (333)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~ 103 (333)
++......+|.+|++||+.|..
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666778888888887764
No 371
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=20.28 E-value=2e+02 Score=22.44 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019982 52 HSALRSQLAEKDSRIAEL 69 (333)
Q Consensus 52 ~~~LR~~laEKd~~i~~L 69 (333)
+..||.++.+=|+.|-+|
T Consensus 7 L~~lR~~ID~iD~~L~~L 24 (109)
T 1ecm_A 7 LLALREKISALDEKLLAL 24 (109)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445565555555544443
No 372
>4eba_G RNA15, KLLA0F09383P; HAT domain, heat repeat, monkeytail, CLP1, PCF11, structural RNA binding protein complex; 3.30A {Kluyveromyces lactis}
Probab=20.25 E-value=96 Score=27.38 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=40.4
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHhhccccHHHHHHhhhhhcCCCChhHHHHHHHhhcccC
Q 019982 273 FRQVRNRLSYEQFAIFLANVKELNAHKQTKEETLRKTDEVFGPENKDLYTIFEGLITRNV 332 (333)
Q Consensus 273 FRQARsRLSYEQFsaFLANIKELNAhkQTREETL~KAeeIFG~~NkdLY~~FegLL~R~~ 332 (333)
.-++=+.|+.+|.-.+|++.|.+-.+--. +|.++|...-.--|..||.||.-++
T Consensus 47 IS~~Ls~lpp~QL~eiL~qmK~l~~~nP~------~ar~LL~~nPQLayAl~QAlL~mgi 100 (174)
T 4eba_G 47 ISSELGKLQKDQQMALLKVIQHFCKDDKE------TFVALLEEAPQLSYAIAELLLSNGV 100 (174)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHGGGC--C------CHHHHHHSCTHHHHHHHHHHHHTSC
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhCHH------HHHHHHHHCchHHHHHHHHHHHhCC
Confidence 44556779999999999999999775433 3678887654556999999987553
No 373
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=20.13 E-value=2.6e+02 Score=21.64 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=18.7
Q ss_pred HHhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 019982 42 STRVSDLESEHSALRSQLA----EKDSRIAELQSQIESIYSSL 80 (333)
Q Consensus 42 atRVs~LEsE~~~LR~~la----EKd~~i~~Lq~rv~~le~aL 80 (333)
--||.+||+-+..|..++| |=...-.-|..||..||..+
T Consensus 6 EEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~ 48 (74)
T 3swf_A 6 EEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFL 48 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466666666655544443 33333333444445444433
No 374
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.12 E-value=2.3e+02 Score=19.84 Aligned_cols=20 Identities=10% Similarity=0.298 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019982 59 LAEKDSRIAELQSQIESIYS 78 (333)
Q Consensus 59 laEKd~~i~~Lq~rv~~le~ 78 (333)
++.-...|.+||.|+.+||.
T Consensus 18 I~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 18 ITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334445667777666664
No 375
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=20.02 E-value=96 Score=24.87 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 019982 91 KERLSKENEALTNTVRKLQ 109 (333)
Q Consensus 91 ~~kL~kE~~sLa~TvKKL~ 109 (333)
...|.+|...|-..+++|+
T Consensus 16 ~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 16 VEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333333334444444443
Done!