Query 019984
Match_columns 333
No_of_seqs 230 out of 1731
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 10:01:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019984.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019984hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.7 1.1E-08 3.9E-13 82.7 5.0 68 232-299 37-105 (137)
2 3b5d_A Multidrug transporter E 98.1 1.3E-05 4.4E-10 62.2 8.0 65 234-298 39-104 (110)
3 3b5d_A Multidrug transporter E 92.9 0.12 4.3E-06 39.4 4.8 32 107-138 73-104 (110)
4 2i68_A Protein EMRE; transmemb 89.8 0.21 7.1E-06 39.8 3.2 32 107-138 73-104 (137)
5 3l1l_A Arginine/agmatine antip 42.7 13 0.00044 34.5 2.8 29 281-309 410-438 (445)
6 2jwa_A Receptor tyrosine-prote 18.1 55 0.0019 20.3 1.5 15 290-304 27-41 (44)
7 3zux_A Transporter, ASBTNM; tr 15.3 3.8E+02 0.013 23.8 7.2 24 252-275 260-284 (332)
8 4djk_A Probable glutamate/gamm 14.1 2E+02 0.0067 26.8 5.2 86 248-333 409-501 (511)
9 3ukw_C Bimax1 peptide; arm rep 12.1 1.2E+02 0.004 16.1 1.6 20 302-321 2-21 (28)
10 2knc_B Integrin beta-3; transm 11.7 5.2 0.00018 28.4 -5.2 59 275-333 6-74 (79)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.70 E-value=1.1e-08 Score=82.74 Aligned_cols=68 Identities=13% Similarity=0.162 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHhhChhHHHHH-HHHHHHHHHHhHhhhccCCCcccccchhhhhhhhhhhhhhhc
Q 019984 232 STVATTSQFFISYTIRTFGALTFATI-MTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFK 299 (333)
Q Consensus 232 ~~~~~l~~~~~~~~i~~~~alt~sv~-~~l~~v~sills~~~fge~~t~~~~iG~~lvl~Gv~~~~~~k 299 (333)
.++..++++++.+++++.++.++..+ ..+.|+++.++|+++|||++++.+++|+++++.|+++....+
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34455667788889999999988888 899999999999999999999999999999999998876543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.06 E-value=1.3e-05 Score=62.23 Aligned_cols=65 Identities=14% Similarity=0.181 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHhhChhHHHHH-HHHHHHHHHHhHhhhccCCCcccccchhhhhhhhhhhhhhh
Q 019984 234 VATTSQFFISYTIRTFGALTFATI-MTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFF 298 (333)
Q Consensus 234 ~~~l~~~~~~~~i~~~~alt~sv~-~~l~~v~sills~~~fge~~t~~~~iG~~lvl~Gv~~~~~~ 298 (333)
+..++.++..+++++.+..++..+ ..+.++++.++|+++|||++|+.+++|+++++.|+......
T Consensus 39 ~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 344556777779999999998777 89999999999999999999999999999999998876543
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=92.95 E-value=0.12 Score=39.40 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=29.7
Q ss_pred HHHHHHhCcccCchhHHHHHHHHHhhHHhhcc
Q 019984 107 IWGTLIMQKRYKGYDYFLALLVTLGCSIFILF 138 (333)
Q Consensus 107 ll~~l~~~~k~s~~~~l~vlli~~Gv~l~~~~ 138 (333)
+++++++||+.++.+++++.++++|+.+....
T Consensus 73 l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 73 LLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 77899999999999999999999999988765
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=89.85 E-value=0.21 Score=39.80 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=23.8
Q ss_pred HHHHHHhCcccCchhHHHHHHHHHhhHHhhcc
Q 019984 107 IWGTLIMQKRYKGYDYFLALLVTLGCSIFILF 138 (333)
Q Consensus 107 ll~~l~~~~k~s~~~~l~vlli~~Gv~l~~~~ 138 (333)
++++++++|++++.++++++++++|+++....
T Consensus 73 l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 73 LLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 67899999999999999999999999998765
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=42.65 E-value=13 Score=34.54 Aligned_cols=29 Identities=3% Similarity=-0.224 Sum_probs=18.9
Q ss_pred ccchhhhhhhhhhhhhhhccccCCCCCCC
Q 019984 281 QCIGSIIVFGALYTRSFFKKVSEKPRPSE 309 (333)
Q Consensus 281 ~~iG~~lvl~Gv~~~~~~k~~~~~~~~~~ 309 (333)
.+.|..+++.|+.+|.+.++|++++.+.+
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~~~~~~~~~ 438 (445)
T 3l1l_A 410 VMWSFVTLMVITAMYALNYNRLHKNPYPL 438 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCcccc
Confidence 34577777788888877766655544433
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=18.10 E-value=55 Score=20.30 Aligned_cols=15 Identities=13% Similarity=0.087 Sum_probs=6.6
Q ss_pred hhhhhhhhhccccCC
Q 019984 290 GALYTRSFFKKVSEK 304 (333)
Q Consensus 290 ~Gv~~~~~~k~~~~~ 304 (333)
.|+.+..+.|+|+.+
T Consensus 27 ~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 27 LGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHCSC
T ss_pred HHHHHHhheehhhhh
Confidence 344444444444433
No 7
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=15.34 E-value=3.8e+02 Score=23.79 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHH-HHHHhHhhhccC
Q 019984 252 LTFATIMTTRQL-VSIVLSCVWFRH 275 (333)
Q Consensus 252 lt~sv~~~l~~v-~sills~~~fge 275 (333)
.+.+.-.-.|+. .++.++...|++
T Consensus 260 ~ti~~e~G~qNs~lai~lA~~~F~~ 284 (332)
T 3zux_A 260 KALTIEVGMQNSGLAAALAAAHFAA 284 (332)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHSTT
T ss_pred hhhhhhhhhccHHHHHHHHHHHcCC
Confidence 344442334443 666667777864
No 8
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=14.14 E-value=2e+02 Score=26.82 Aligned_cols=86 Identities=14% Similarity=-0.032 Sum_probs=0.0
Q ss_pred hhChhHHHHHHHHHHHHHHHhHhhhccCCCcccc------cchhhhhhhhhhhhhhhccccC-CCCCCCCCCcccccccc
Q 019984 248 TFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQ------CIGSIIVFGALYTRSFFKKVSE-KPRPSEHPMENMHNGAS 320 (333)
Q Consensus 248 ~~~alt~sv~~~l~~v~sills~~~fge~~t~~~------~iG~~lvl~Gv~~~~~~k~~~~-~~~~~~~~~~~~~~~~~ 320 (333)
+.+....++++.+--++.++..++=-..+.+... .++..+++.++.+..+.+++++ .+.|.++..+.++++..
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (511)
T 4djk_A 409 KGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVVLALPFILYAVHDRKGKANTGVTLEPINSQNAP 488 (511)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTCCCSCSTTCCCCCHHHHHHHHHHHHHHHHHHHHHCC---------------------
T ss_pred chHHHHHHHHHHHHHHHHHHeeeeCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccchhhhcccC
Q ss_pred ccccCCCCCCCCC
Q 019984 321 SLMKGSSPRGGEP 333 (333)
Q Consensus 321 ~~~~~~~~~~~~~ 333 (333)
..-+...|+..+.
T Consensus 489 ~~~~~~~~~~~~~ 501 (511)
T 4djk_A 489 KGHFFLHPRARSP 501 (511)
T ss_dssp ---TTSCTTTCCC
T ss_pred cccccCCccccCC
No 9
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=12.10 E-value=1.2e+02 Score=16.13 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCccccccccc
Q 019984 302 SEKPRPSEHPMENMHNGASS 321 (333)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~ 321 (333)
.++..|.+.|.|-||+|..+
T Consensus 2 srrrrprkrplewdedeepp 21 (28)
T 3ukw_C 2 SRRRRPRKRPLEWDEDEEPP 21 (28)
T ss_dssp -----CCCCCCCCCGGGSCC
T ss_pred ccccccccCCcccccccCcc
No 10
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=11.71 E-value=5.2 Score=28.40 Aligned_cols=59 Identities=12% Similarity=-0.001 Sum_probs=0.0
Q ss_pred CCCcccccchh---hhhhhhhhhhhhhc-------cccCCCCCCCCCCccccccccccccCCCCCCCCC
Q 019984 275 HPLSWEQCIGS---IIVFGALYTRSFFK-------KVSEKPRPSEHPMENMHNGASSLMKGSSPRGGEP 333 (333)
Q Consensus 275 e~~t~~~~iG~---~lvl~Gv~~~~~~k-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (333)
++++...++|. ++++.|+.+....| +|+.++-++|..+++=+++..++.+++..+-..|
T Consensus 6 ~~~n~~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE~~~~~w~~~~NPlyk~~ttt~~nP 74 (79)
T 2knc_B 6 KGPDILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERARAKWDTANNPLYKEATSTFTNI 74 (79)
T ss_dssp SSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHCSCCSCCC
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccCCccCccCC
Done!