Query 019984
Match_columns 333
No_of_seqs 230 out of 1731
Neff 8.3
Searched_HMMs 13730
Date Mon Mar 25 10:02:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019984.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019984hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fftb2 f.17.2.1 (B:27-117) Cy 34.5 10 0.00073 25.7 2.2 19 288-306 31-49 (91)
2 d1iwga8 f.35.1.1 (A:513-566,A: 20.8 1.2E+02 0.0091 23.2 7.1 28 263-290 95-122 (222)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 7.1 1.2E+02 0.0091 14.8 1.7 19 283-301 3-22 (27)
4 d3dtub2 f.17.2.1 (B:30-129) Ba 6.4 1.1E+02 0.0081 20.3 1.9 17 288-304 42-58 (100)
5 d3ehbb2 f.17.2.1 (B:1-107) Bac 6.4 1.2E+02 0.0084 20.5 2.0 16 289-304 49-64 (107)
6 d2iuba2 f.17.3.1 (A:286-349) M 4.0 3.3E+02 0.024 15.9 2.9 8 294-301 56-63 (64)
7 d1kqfb2 f.23.22.1 (B:246-290) 3.9 1.9E+02 0.014 16.4 1.4 26 272-297 7-32 (45)
8 d1iwga7 f.35.1.1 (A:7-37,A:331 3.7 2.6E+02 0.019 20.7 2.6 37 254-290 68-104 (199)
9 d1pw4a_ f.38.1.1 (A:) Glycerol 3.5 8.9E+02 0.065 18.6 16.6 8 170-177 78-85 (447)
10 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.2 8.8E+02 0.064 18.4 5.6 11 89-99 4-14 (248)
No 1
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=34.48 E-value=10 Score=25.75 Aligned_cols=19 Identities=5% Similarity=-0.197 Sum_probs=12.0
Q ss_pred hhhhhhhhhhhccccCCCC
Q 019984 288 VFGALYTRSFFKKVSEKPR 306 (333)
Q Consensus 288 vl~Gv~~~~~~k~~~~~~~ 306 (333)
+..|++++...|.|+++..
T Consensus 31 ~V~~~~~~~~~ryR~~~~~ 49 (91)
T d1fftb2 31 PAILMAVGFAWKYRASNKD 49 (91)
T ss_dssp HHHHHHHTTTTTTTTSTTT
T ss_pred HHHHHHHhhheeeeccCCc
Confidence 3456777777777665543
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=20.82 E-value=1.2e+02 Score=23.16 Aligned_cols=28 Identities=11% Similarity=0.170 Sum_probs=21.9
Q ss_pred HHHHHhHhhhccCCCcccccchhhhhhh
Q 019984 263 LVSIVLSCVWFRHPLSWEQCIGSIIVFG 290 (333)
Q Consensus 263 v~sills~~~fge~~t~~~~iG~~lvl~ 290 (333)
+...+.+..+.+.+++....+|..+.++
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhh
Confidence 3456677778999999999888887665
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.08 E-value=1.2e+02 Score=14.78 Aligned_cols=19 Identities=16% Similarity=0.501 Sum_probs=10.8
Q ss_pred chhhhh-hhhhhhhhhhccc
Q 019984 283 IGSIIV-FGALYTRSFFKKV 301 (333)
Q Consensus 283 iG~~lv-l~Gv~~~~~~k~~ 301 (333)
+|.+++ ++|+++..+...|
T Consensus 3 lgli~~tl~glf~aayqqyk 22 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred eeehHHHHHHHHHHHHHHhc
Confidence 344444 4677776665443
No 4
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.45 E-value=1.1e+02 Score=20.29 Aligned_cols=17 Identities=6% Similarity=0.088 Sum_probs=9.0
Q ss_pred hhhhhhhhhhhccccCC
Q 019984 288 VFGALYTRSFFKKVSEK 304 (333)
Q Consensus 288 vl~Gv~~~~~~k~~~~~ 304 (333)
++.|+..+...|.|+++
T Consensus 42 ~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 42 FVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHhhhhhccC
Confidence 34465666655555443
No 5
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=6.38 E-value=1.2e+02 Score=20.54 Aligned_cols=16 Identities=6% Similarity=-0.093 Sum_probs=9.3
Q ss_pred hhhhhhhhhhccccCC
Q 019984 289 FGALYTRSFFKKVSEK 304 (333)
Q Consensus 289 l~Gv~~~~~~k~~~~~ 304 (333)
+.|+..+...|.|+++
T Consensus 49 V~~~~~~~~~~~r~~~ 64 (107)
T d3ehbb2 49 VCLLLLICIVRFNRRA 64 (107)
T ss_dssp HHHHHHHHHHHSBTTT
T ss_pred HHHHHHHHhhhhhccC
Confidence 4566666666655543
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.02 E-value=3.3e+02 Score=15.94 Aligned_cols=8 Identities=38% Similarity=0.551 Sum_probs=3.2
Q ss_pred hhhhhccc
Q 019984 294 TRSFFKKV 301 (333)
Q Consensus 294 ~~~~~k~~ 301 (333)
.+.+.|+|
T Consensus 56 ~~~~f~rk 63 (64)
T d2iuba2 56 MVVYFKKK 63 (64)
T ss_dssp HHTTTTSC
T ss_pred HHHHHhcc
Confidence 33344443
No 7
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=3.93 E-value=1.9e+02 Score=16.44 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=15.1
Q ss_pred hccCCCcccccchhhhhhhhhhhhhh
Q 019984 272 WFRHPLSWEQCIGSIIVFGALYTRSF 297 (333)
Q Consensus 272 ~fge~~t~~~~iG~~lvl~Gv~~~~~ 297 (333)
++....-+...+|+...+++.++.-.
T Consensus 7 lWKgv~Kpl~~~~~~~~~~~~~fHYv 32 (45)
T d1kqfb2 7 LWKGALKPLAAAGFIATFAGLIFHYI 32 (45)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 34455566666777777665444433
No 8
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.74 E-value=2.6e+02 Score=20.66 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhHhhhccCCCcccccchhhhhhh
Q 019984 254 FATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFG 290 (333)
Q Consensus 254 ~sv~~~l~~v~sills~~~fge~~t~~~~iG~~lvl~ 290 (333)
...+...-.+........++|.+++.....+..+.++
T Consensus 68 i~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~ig 104 (199)
T d1iwga7 68 IPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIG 104 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHH
T ss_pred eeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 3344444445555555677888888887777777665
No 9
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=3.47 E-value=8.9e+02 Score=18.56 Aligned_cols=8 Identities=13% Similarity=0.418 Sum_probs=3.4
Q ss_pred hhHHHHHH
Q 019984 170 FTSTFQDK 177 (333)
Q Consensus 170 ~~~~~~~~ 177 (333)
+.+.+.||
T Consensus 78 ~~G~l~Dr 85 (447)
T d1pw4a_ 78 IMGSVSDR 85 (447)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444444
No 10
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.16 E-value=8.8e+02 Score=18.39 Aligned_cols=11 Identities=18% Similarity=0.585 Sum_probs=4.9
Q ss_pred hHHHHHHHHHh
Q 019984 89 KYCLVSMSNIL 99 (333)
Q Consensus 89 ~y~~~s~~~~~ 99 (333)
+|+++++.|..
T Consensus 4 K~~ll~l~~a~ 14 (248)
T d2r6gf1 4 KWSVLGLLGLL 14 (248)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
Done!