BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019985
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XHE|B Chain B, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 279
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 127/249 (51%), Gaps = 26/249 (10%)
Query: 45 FFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAV---KDLRSRMDADVS------A 95
FF+ V+ ++D ++++E+ + E+ LH V K+ R R++ + +
Sbjct: 46 FFNRVKRIRDNIEDIEQ-------AIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARIS 98
Query: 96 ALKNAKLIKIRLEALDRSN--AANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNE 153
AL N I+ L+ +++ N A G S+ R R S + L +K M +N+
Sbjct: 99 ALGNK--IRADLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYND 156
Query: 154 LRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTIN 213
++ Y + V R+ V D+ + ++I G F ++ +G L N
Sbjct: 157 VQAENKRRYGENVARQCRVVEPSLSDD-AIQKVIEHGTEGIF--SGMRLEGAEAKL---N 210
Query: 214 EIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQT 273
EI++RH ++ LE++L ELH++F DM+ LV +QGE +D IE V+++++YV+ TE++
Sbjct: 211 EIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQ 270
Query: 274 ARKYQLSTR 282
AR YQ S R
Sbjct: 271 ARHYQESAR 279
>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 279
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 124/254 (48%), Gaps = 32/254 (12%)
Query: 42 LDKFFDDVESVK-------DELKELERLHNSLQTSH--EKSKTLHNAKAVKDLRSRMDAD 92
+D+FF+ VE ++ + ++E++R H+++ S ++ + + D++
Sbjct: 42 MDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIK------ 95
Query: 93 VSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFN 152
K A ++ +L+++++S G S+ R R + + L +K + M +N
Sbjct: 96 -----KTANKVRSKLKSIEQSIEQE---EGLNRSSADLRIRKTQHSTLSRKFVEVMSEYN 147
Query: 153 ELRQRISSEYRDTVQ---RRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRIL 209
+ S+YR+ + +R +TG + L+ ++ +G F I + +
Sbjct: 148 ATQ----SDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSSISK-- 201
Query: 210 DTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTE 269
++EI+ RH + LE +++ELH +F+DMA+LV++QGE +D IE V+ A YV
Sbjct: 202 QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVS 261
Query: 270 RLQTARKYQLSTRK 283
+ A KYQ R+
Sbjct: 262 DTKKAVKYQSKARR 275
>pdb|3HD7|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3HD7|F Chain F, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3IPD|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
pdb|3IPD|F Chain F, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
Length = 109
Score = 63.2 bits (152), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 212 INEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERL 271
++EI+ RH + LE +++ELH +F+DMA+LV++QGE +D IE V+ A YV
Sbjct: 13 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDT 72
Query: 272 QTARKYQLSTRK 283
+ A KYQ R+
Sbjct: 73 KKAVKYQSKARR 84
>pdb|1SFC|B Chain B, Neuronal Synaptic Fusion Complex
pdb|1SFC|F Chain F, Neuronal Synaptic Fusion Complex
pdb|1SFC|J Chain J, Neuronal Synaptic Fusion Complex
Length = 83
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 6/83 (7%)
Query: 206 GRILDT------INEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQR 259
G I+D+ ++EI+ RH + LE +++ELH +F+DMA+LV++QGE +D IE V+
Sbjct: 1 GIIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEH 60
Query: 260 ANSYVRGGTERLQTARKYQLSTR 282
A YV + A KYQ R
Sbjct: 61 AVDYVERAVSDTKKAVKYQSKAR 83
>pdb|1JTH|B Chain B, Crystal Structure And Biophysical Properties Of A Complex
Between The N-Terminal Region Of Snap25 And The Snare
Region Of Syntaxin 1a
pdb|1JTH|D Chain D, Crystal Structure And Biophysical Properties Of A Complex
Between The N-Terminal Region Of Snap25 And The Snare
Region Of Syntaxin 1a
Length = 77
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 211 TINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTER 270
++EI+ RH + LE +++ELH +F+DMA+LV++QGE +D IE V+ A YV
Sbjct: 1 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 60
Query: 271 LQTARKYQLSTRK 283
+ A KYQ R+
Sbjct: 61 TKKAVKYQSKARR 73
>pdb|1HVV|A Chain A, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|B Chain B, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|C Chain C, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|D Chain D, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
Length = 75
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 211 TINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTER 270
++EI+ RH + LE +++ELH +F+DMA+LV++QGE +D IE V+ A YV
Sbjct: 2 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 61
Query: 271 LQTARKYQLSTRK 283
+ A KYQ R+
Sbjct: 62 TKKAVKYQSKARR 74
>pdb|1URQ|B Chain B, Crystal Structure Of Neuronal Q-Snares In Complex With
R-Snare Motif Of Tomosyn
Length = 75
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 211 TINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTER 270
++EI+ RH + LE +++ELH +F+DMA+LV++QGE +D IE V+ A YV
Sbjct: 7 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 66
Query: 271 LQTARKYQ 278
+ A KYQ
Sbjct: 67 TKKAVKYQ 74
>pdb|1L4A|B Chain B, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 88
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 211 TINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTER 270
T+ +I+ RH + LE +++ELH +F+DMA+LV++QGE +D IE V+ A Y+
Sbjct: 17 TLADIEARHADIMKLETSIRELHDMFMDMAMLVESQGEMIDRIEYNVEAAVDYIETAKVD 76
Query: 271 LQTARKYQLSTR 282
+ A KYQ R
Sbjct: 77 TKKAVKYQSKAR 88
>pdb|1N7S|B Chain B, High Resolution Structure Of A Truncated Neuronal Snare
Complex
Length = 68
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 39/54 (72%)
Query: 211 TINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYV 264
++EI+ RH + LE +++ELH +F+DMA+LV++QGE +D IE V+ A YV
Sbjct: 3 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYV 56
>pdb|3RK2|B Chain B, Truncated Snare Complex
pdb|3RK2|F Chain F, Truncated Snare Complex
pdb|3RK3|B Chain B, Truncated Snare Complex With Complexin
pdb|3RL0|B Chain B, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|F Chain F, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|J Chain J, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|N Chain N, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|R Chain R, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|V Chain V, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|Z Chain Z, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|DD Chain d, Truncated Snare Complex With Complexin (P1)
Length = 65
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 39/54 (72%)
Query: 211 TINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYV 264
++EI+ RH + LE +++ELH +F+DMA+LV++QGE +D IE V+ A YV
Sbjct: 3 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYV 56
>pdb|1KIL|B Chain B, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX
Length = 62
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 39/54 (72%)
Query: 211 TINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYV 264
++EI+ RH + LE +++ELH +F+DMA+LV++QGE +D IE V+ A YV
Sbjct: 3 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYV 56
>pdb|2NPS|B Chain B, Crystal Structure Of The Early Endosomal Snare Complex
Length = 71
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 44/66 (66%)
Query: 218 RHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKY 277
R A++ LE ++ +++Q+F D+A+++ QG+ +D IE+ V+ + +V +++LQ A Y
Sbjct: 4 RETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYY 63
Query: 278 QLSTRK 283
Q +RK
Sbjct: 64 QKKSRK 69
>pdb|3GG2|A Chain A, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|B Chain B, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|C Chain C, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|D Chain D, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
Length = 450
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 32/165 (19%)
Query: 82 VKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSL-PGCGPGSSS------DRTRT 134
V +L R+ ADVS +RL S ++ L PGCG G S RT
Sbjct: 229 VANLCERVGADVS---------MVRLGIGSDSRIGSKFLYPGCGYGGSCFPKDVKALIRT 279
Query: 135 SVVNGLRKKLKDSMESFNE-----LRQRISSEYRDTVQRRYYTVTG-----------ENP 178
+ NG R ++ +++E NE L + S+ Y+ VQ R + G E P
Sbjct: 280 AEDNGYRMEVLEAVERVNEKQKSILFDKFSTYYKGNVQGRCVAIWGLSFKPGTDDMREAP 339
Query: 179 DEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVK 223
+++L+ G ++ + R+ D + + +DAV+
Sbjct: 340 SLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVR 384
>pdb|1GL2|B Chain B, Crystal Structure Of An Endosomal Snare Core Complex
Length = 65
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 39/60 (65%)
Query: 215 IQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTA 274
+ ER +++ LE ++ +++++F D+ +++ QG+ +D IE+ V+ A +V+ ++L A
Sbjct: 4 MHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRA 63
>pdb|1FIO|A Chain A, Crystal Structure Of Yeast T-Snare Protein Sso1
Length = 196
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 161 EYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHD 220
E ++ +R+Y + E +++ + G + F Q + RG + E+Q RH
Sbjct: 110 ENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQ 169
Query: 221 AVKVLEKNLQELHQVFLDMAVLV 243
+ LEK++ EL Q+F DM LV
Sbjct: 170 ELLKLEKSMAELTQLFNDMEELV 192
>pdb|3B5N|B Chain B, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|F Chain F, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|J Chain J, Structure Of The Yeast Plasma Membrane Snare Complex
Length = 69
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 211 TINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGT 268
+ E+Q RH + LEK++ EL Q+F DM LV Q E +D I+ V+ A V G
Sbjct: 1 ALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGV 58
>pdb|4GAO|A Chain A, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|B Chain B, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|D Chain D, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|G Chain G, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
Length = 200
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 126 GSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRR-YYTVT---GENPDEK 181
+ + +R ++G+ + DSME L R+ E +DT + + +Y T +NP +K
Sbjct: 53 ATQCEFSRKEFLDGMTELGCDSMEKLKALLPRLEQELKDTAKFKDFYQFTFTFAKNPGQK 112
Query: 182 TLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERH 219
LD ++ + L GR + LD N H
Sbjct: 113 GLDLEMAVAYWKLVL------SGRFKFLDLWNTFLMEH 144
>pdb|1CG1|A Chain A, Structure Of The Mutant (K16q) Of Adenylosuccinate
Synthetase From E. Coli Complexed With Hadacidin, Gdp,
6-Phosphoryl-Imp, And Mg2+
Length = 431
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 39 GVNLDKFFDDVESVKDELKELERLHNSLQTSHEKS------KTLHNAKAVKDLRSRMDAD 92
G+ + FD E+ ++LKE+ HN ++ K+ K L + AV D+ + M D
Sbjct: 145 GLRVGDLFDK-ETFAEKLKEVMEYHNFQLVNYYKAEAVDYQKVLDDTMAVADILTSMVVD 203
Query: 93 VSAALKNAK 101
VS L A+
Sbjct: 204 VSDLLDQAR 212
>pdb|1CG3|A Chain A, Structure Of The Mutant (R143l) Of Adenylosuccinate
Synthetase From E. Coli Complexed With Hadacidin, Gdp,
6-Phosphoryl-Imp, And Mg2+
Length = 431
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 39 GVNLDKFFDDVESVKDELKELERLHNSLQTSHEKS------KTLHNAKAVKDLRSRMDAD 92
G+ + FD E+ ++LKE+ HN ++ K+ K L + AV D+ + M D
Sbjct: 145 GLRVGDLFDK-ETFAEKLKEVMEYHNFQLVNYYKAEAVDYQKVLDDTMAVADILTSMVVD 203
Query: 93 VSAALKNAK 101
VS L A+
Sbjct: 204 VSDLLDQAR 212
>pdb|1CG4|A Chain A, Structure Of The Mutant (R303l) Of Adenylosuccinate
Synthetase From E. Coli Complexed With, Gdp,
6-Phosphoryl-Imp, And Mg2+
Length = 431
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 39 GVNLDKFFDDVESVKDELKELERLHNSLQTSHEKS------KTLHNAKAVKDLRSRMDAD 92
G+ + FD E+ ++LKE+ HN ++ K+ K L + AV D+ + M D
Sbjct: 145 GLRVGDLFDK-ETFAEKLKEVMEYHNFQLVNYYKAEAVDYQKVLDDTMAVADILTSMVVD 203
Query: 93 VSAALKNAK 101
VS L A+
Sbjct: 204 VSDLLDQAR 212
>pdb|1KJX|A Chain A, Imp Complex Of E. Coli Adenylosuccinate Synthetase
pdb|1KKB|A Chain A, Complex Of Escherichia Coli Adenylosuccinate Synthetase
With Imp And Hadacidin
pdb|1KKF|A Chain A, Complex Of E. Coli Adenylosuccinate Synthetase With Imp,
Hadacidin, Pyrophosphate, And Mg
Length = 432
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 39 GVNLDKFFDDVESVKDELKELERLHNSLQTSHEKS------KTLHNAKAVKDLRSRMDAD 92
G+ + FD E+ ++LKE+ HN ++ K+ K L + AV D+ + M D
Sbjct: 146 GLRVGDLFDK-ETFAEKLKEVMEYHNFQLVNYYKAEAVDYQKVLDDTMAVADILTSMVVD 204
Query: 93 VSAALKNAK 101
VS L A+
Sbjct: 205 VSDLLDQAR 213
>pdb|1HON|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degree Celsius
pdb|1HON|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degree Celsius
pdb|1HOP|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degrees Celsius
pdb|1HOP|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degrees Celsius
Length = 431
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 39 GVNLDKFFDDVESVKDELKELERLHNSLQTSHEKS------KTLHNAKAVKDLRSRMDAD 92
G+ + FD E+ ++LKE+ HN ++ K+ K L + AV D+ + M D
Sbjct: 145 GLRVGDLFDK-ETFAEKLKEVMEYHNFQLVNYYKAEAVDYQKVLDDTMAVADILTSMVVD 203
Query: 93 VSAALKNAK 101
VS L A+
Sbjct: 204 VSDLLDQAR 212
>pdb|1CG0|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With Hadacidin, Gdp, 6-Phosphoryl-Imp, And
Mg2+
pdb|1CH8|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With A Stringent Effector, Ppg2':3'p
pdb|1QF4|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of An
Enzyme Bound Bisubstrate Hybrid Inhibitor Of
Adenylosuccinate Synthetase
pdb|1QF5|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of An
Enzyme Bound Bisubstrate Hybrid Inhibitor Of
Adenylosuccinate Synthetase
pdb|1CIB|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With Gdp, Imp, Hadacidin, And No3
pdb|2GCQ|A Chain A, Fully Ligated E.Coli Adenylosuccinate Synthetase With Gtp,
2'-Deoxy- Imp And Hadacidin
pdb|1SON|A Chain A, Adenylosuccinate Synthetase In Complex With The Natural
Feedback Inhibitor Amp
pdb|1SOO|A Chain A, Adenylosuccinate Synthetase Inhibited By Hydantocidin
5'-Monophosphate
pdb|1ADE|A Chain A, Structure Of Adenylosuccinate Synthetase Ph 7 At 25
Degrees Celsius
pdb|1ADE|B Chain B, Structure Of Adenylosuccinate Synthetase Ph 7 At 25
Degrees Celsius
pdb|1ADI|A Chain A, Structure Of Adenylosuccinate Synthetase At Ph 6.5 And 25
Degrees Celsius
pdb|1ADI|B Chain B, Structure Of Adenylosuccinate Synthetase At Ph 6.5 And 25
Degrees Celsius
pdb|1HOO|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From E. Coli At Ph 6.5 And
25 Degrees Celsius
pdb|1HOO|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From E. Coli At Ph 6.5 And
25 Degrees Celsius
pdb|1GIM|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Escherichia Coli Complexed With Gdp, Imp, Hadacidin,
No3-, And Mg2+. Data Collected At 100k (Ph 6.5)
pdb|1GIN|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Escherichia Coli Complexed With Gdp, Imp, Hadacidin,
No3-, And Mg2+. Data Collected At 298k (Ph 6.5).
pdb|1KSZ|A Chain A, Entrapment Of 6-Thiophosphoryl-Imp In The Active Site Of
Crystalline Adenylosuccinate Synthetase From Escherichia
Coli, Data Collected At 298k
pdb|1NHT|A Chain A, Entrapment Of 6-Thiophosphoryl-Imp In The Active Site Of
Crystalline Adenylosuccinate Synthetase From Escherichia
Coli Data Collected At 100k
pdb|1JUY|A Chain A, Refined Crystal Structure Of Adenylosuccinate Synthetase
From Escherichia Coli Complexed With Hydantocidin 5'-
Phosphate Gdp, Hpo4(2-), Mg2+, And Hadacidin
Length = 431
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 39 GVNLDKFFDDVESVKDELKELERLHNSLQTSHEKS------KTLHNAKAVKDLRSRMDAD 92
G+ + FD E+ ++LKE+ HN ++ K+ K L + AV D+ + M D
Sbjct: 145 GLRVGDLFDK-ETFAEKLKEVMEYHNFQLVNYYKAEAVDYQKVLDDTMAVADILTSMVVD 203
Query: 93 VSAALKNAK 101
VS L A+
Sbjct: 204 VSDLLDQAR 212
>pdb|2O5V|A Chain A, Recombination Mediator Recf
Length = 359
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 25/124 (20%)
Query: 170 YYTVTGENPDEKTLDRLISTGESETFLQKAIQEQG----------RGRILDTINEIQ--- 216
Y +TG+ D +++LI GE+E +++ +Q+ G RGR ++ ++
Sbjct: 47 YLALTGQT-DAPRIEQLIQAGETEAYVRADLQQGGSLSIQEVGLGRGRRQLKVDGVRART 105
Query: 217 ---ERHDAVKVLEKNLQELH------QVFLD--MAVLVQAQGEQLDDIESQVQRANSYVR 265
R AV + ++ + + + +LD ++ L GEQL E V + N+ +R
Sbjct: 106 GDLPRGGAVWIRPEDSELVFGPPSGRRAYLDSLLSRLSARYGEQLSRYERTVSQRNAALR 165
Query: 266 GGTE 269
GG E
Sbjct: 166 GGEE 169
>pdb|3VBB|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
pdb|3VBB|B Chain B, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
pdb|3VBB|C Chain C, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
pdb|3VBB|D Chain D, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
pdb|3VBB|E Chain E, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
pdb|3VBB|F Chain F, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
Length = 522
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 5/115 (4%)
Query: 93 VSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFN 152
VS +L +A K+ LEA + A R L C + R + G KK+ D +E +
Sbjct: 365 VSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVH 424
Query: 153 ELRQRISSEYRD--TVQRRYYTVTGENPDEKTLDRLISTGESE--TFLQKAIQEQ 203
L + + R + Y T G EK L + G E F++ A EQ
Sbjct: 425 MLNATMCATTRTICAILENYQTEKGITVPEK-LKEFMPPGLQELIPFVKPAPIEQ 478
>pdb|2AC3|A Chain A, Structure Of Human Mnk2 Kinase Domain
Length = 316
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 197 QKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELH-QVFLDMAVLVQAQG 247
+ + E R+ IN I + AVK++EK + +VF ++ +L Q QG
Sbjct: 18 EDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQG 69
>pdb|2AC5|A Chain A, Structure Of Human Mnk2 Kinase Domain Mutant D228g
pdb|2HW7|A Chain A, Crystal Structure Of Mnk2-D228g In Complex With
Staurosporine
Length = 316
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 197 QKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELH-QVFLDMAVLVQAQG 247
+ + E R+ IN I + AVK++EK + +VF ++ +L Q QG
Sbjct: 18 EDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQG 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,085,343
Number of Sequences: 62578
Number of extensions: 303635
Number of successful extensions: 958
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 932
Number of HSP's gapped (non-prelim): 40
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)