Query 019985
Match_columns 332
No_of_seqs 177 out of 1334
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 06:06:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019985.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019985hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0810 SNARE protein Syntaxin 100.0 6.2E-54 1.4E-58 402.5 33.1 291 1-309 1-295 (297)
2 COG5074 t-SNARE complex subuni 100.0 3.3E-37 7.2E-42 273.1 28.4 255 27-301 11-268 (280)
3 KOG0809 SNARE protein TLG2/Syn 100.0 1.5E-31 3.3E-36 245.2 23.8 268 19-305 24-303 (305)
4 KOG0811 SNARE protein PEP12/VA 100.0 1.1E-28 2.4E-33 228.3 29.7 251 35-304 9-264 (269)
5 COG5325 t-SNARE complex subuni 99.9 1.1E-20 2.5E-25 172.5 27.1 242 39-301 30-276 (283)
6 cd00179 SynN Syntaxin N-termin 99.9 3.9E-20 8.5E-25 158.5 19.9 149 42-197 1-149 (151)
7 KOG0812 SNARE protein SED5/Syn 99.8 1.4E-16 2.9E-21 146.2 26.7 242 40-301 38-308 (311)
8 smart00503 SynN Syntaxin N-ter 99.6 1.6E-13 3.4E-18 112.4 16.2 116 41-163 2-117 (117)
9 PF05739 SNARE: SNARE domain; 99.5 6.3E-13 1.4E-17 97.4 10.1 63 217-279 1-63 (63)
10 PF00804 Syntaxin: Syntaxin; 99.4 9.4E-12 2E-16 99.0 13.3 103 41-148 1-103 (103)
11 cd00193 t_SNARE Soluble NSF (N 99.3 2E-11 4.3E-16 87.9 8.1 59 216-274 2-60 (60)
12 KOG3202 SNARE protein TLG1/Syn 99.2 4.1E-08 8.9E-13 89.9 26.7 228 41-301 4-232 (235)
13 smart00397 t_SNARE Helical reg 99.2 2.5E-10 5.3E-15 83.6 9.0 63 212-274 4-66 (66)
14 KOG3894 SNARE protein Syntaxin 98.5 0.00015 3.1E-09 68.5 24.8 86 210-295 222-307 (316)
15 PF14523 Syntaxin_2: Syntaxin- 98.4 1.2E-05 2.6E-10 64.2 13.6 99 52-163 1-99 (102)
16 KOG3385 V-SNARE [Intracellular 97.6 0.00037 8E-09 56.6 8.7 81 216-298 32-112 (118)
17 PF00957 Synaptobrevin: Synapt 97.3 0.012 2.6E-07 45.8 12.9 48 220-267 3-50 (89)
18 KOG0860 Synaptobrevin/VAMP-lik 97.3 0.0078 1.7E-07 49.2 11.9 38 221-258 30-67 (116)
19 COG5325 t-SNARE complex subuni 96.9 0.36 7.8E-06 45.2 26.8 86 212-301 194-279 (283)
20 PF09753 Use1: Membrane fusion 96.8 0.019 4.1E-07 53.5 12.2 80 221-306 171-250 (251)
21 COG5074 t-SNARE complex subuni 96.8 0.4 8.6E-06 44.0 22.6 91 215-305 173-268 (280)
22 KOG1666 V-SNARE [Intracellular 96.8 0.39 8.4E-06 43.4 24.5 77 221-298 136-212 (220)
23 KOG0810 SNARE protein Syntaxin 95.7 2 4.3E-05 41.1 27.8 82 219-300 198-283 (297)
24 KOG0811 SNARE protein PEP12/VA 95.2 2.9 6.3E-05 39.5 22.8 88 211-301 178-265 (269)
25 KOG3065 SNAP-25 (synaptosome-a 93.2 0.38 8.2E-06 45.4 7.8 57 217-273 215-271 (273)
26 PF10717 ODV-E18: Occlusion-de 93.0 0.13 2.9E-06 39.4 3.7 10 309-318 45-54 (85)
27 KOG2678 Predicted membrane pro 91.4 5.7 0.00012 36.3 12.6 82 221-308 159-241 (244)
28 PF00957 Synaptobrevin: Synapt 90.6 6.4 0.00014 30.3 12.6 29 209-237 20-48 (89)
29 PF03908 Sec20: Sec20; InterP 90.4 7.1 0.00015 30.4 12.3 37 243-279 31-67 (92)
30 PF05478 Prominin: Prominin; 90.3 31 0.00068 37.6 32.3 55 221-277 358-412 (806)
31 PF10717 ODV-E18: Occlusion-de 89.4 0.71 1.5E-05 35.5 4.4 20 302-321 41-60 (85)
32 KOG0809 SNARE protein TLG2/Syn 88.5 23 0.00051 33.7 20.1 245 25-300 44-301 (305)
33 PF09753 Use1: Membrane fusion 86.0 14 0.0003 34.3 11.9 86 212-301 154-241 (251)
34 COG1580 FliL Flagellar basal b 83.2 1.2 2.5E-05 38.8 3.1 26 285-310 17-42 (159)
35 PF12273 RCR: Chitin synthesis 83.0 1.2 2.7E-05 37.1 3.2 19 283-301 1-19 (130)
36 KOG3850 Predicted membrane pro 81.6 58 0.0013 32.3 18.5 19 93-111 100-118 (455)
37 PF10779 XhlA: Haemolysin XhlA 81.0 20 0.00044 26.6 9.7 40 246-289 18-57 (71)
38 PF03904 DUF334: Domain of unk 80.8 46 0.001 30.6 13.1 42 254-295 119-160 (230)
39 PTZ00264 circumsporozoite-rela 80.2 13 0.00028 30.7 7.9 26 305-331 106-131 (148)
40 PF11166 DUF2951: Protein of u 80.1 28 0.0006 27.6 11.7 42 220-261 11-52 (98)
41 PF14992 TMCO5: TMCO5 family 79.9 51 0.0011 31.3 12.9 55 211-265 121-175 (280)
42 PHA02844 putative transmembran 79.5 3 6.5E-05 31.4 3.7 28 282-309 46-74 (75)
43 KOG0859 Synaptobrevin/VAMP-lik 76.7 18 0.00039 32.6 8.4 52 221-275 126-177 (217)
44 PLN02745 Putative pectinestera 76.0 3.1 6.7E-05 43.6 4.1 13 273-285 14-26 (596)
45 PF11027 DUF2615: Protein of u 74.9 7.2 0.00016 31.4 5.0 10 299-308 67-76 (103)
46 KOG1924 RhoA GTPase effector D 74.7 1.3E+02 0.0027 32.9 15.1 15 78-92 363-377 (1102)
47 PHA02650 hypothetical protein; 74.3 4.2 9.1E-05 31.0 3.3 31 281-311 46-77 (81)
48 PRK09510 tolA cell envelope in 74.1 4.6 0.0001 40.0 4.5 7 302-308 30-36 (387)
49 PF12352 V-SNARE_C: Snare regi 73.8 30 0.00066 24.8 9.9 56 221-276 9-64 (66)
50 PF11027 DUF2615: Protein of u 73.4 9.8 0.00021 30.7 5.5 18 284-301 55-72 (103)
51 KOG2675 Adenylate cyclase-asso 70.2 37 0.00081 34.1 9.7 17 311-327 230-246 (480)
52 PF09177 Syntaxin-6_N: Syntaxi 69.1 53 0.0012 25.7 11.1 62 44-115 2-63 (97)
53 PF05568 ASFV_J13L: African sw 68.3 16 0.00034 31.3 5.8 15 314-328 80-94 (189)
54 KOG3251 Golgi SNAP receptor co 68.2 96 0.0021 28.3 24.3 51 229-279 138-188 (213)
55 KOG0860 Synaptobrevin/VAMP-lik 67.4 70 0.0015 26.4 10.6 25 210-234 47-71 (116)
56 PRK04325 hypothetical protein; 67.3 49 0.0011 24.9 7.9 43 222-264 11-53 (74)
57 PF02346 Vac_Fusion: Chordopox 64.7 37 0.00081 24.4 6.3 45 221-265 2-46 (57)
58 PF04102 SlyX: SlyX; InterPro 64.5 44 0.00095 24.6 7.1 48 221-268 5-52 (69)
59 PF09889 DUF2116: Uncharacteri 63.9 21 0.00046 25.8 5.0 12 269-280 26-37 (59)
60 PF06589 CRA: Circumsporozoite 63.8 49 0.0011 27.9 7.7 19 269-287 61-79 (157)
61 PF10267 Tmemb_cc2: Predicted 63.7 1.7E+02 0.0036 29.4 14.2 31 38-68 210-240 (395)
62 KOG4797 Transcriptional regula 63.1 39 0.00085 27.4 6.8 22 1-22 6-27 (123)
63 KOG0250 DNA repair protein RAD 62.9 2.6E+02 0.0057 31.5 26.9 25 212-236 364-388 (1074)
64 KOG1693 emp24/gp25L/p24 family 62.1 31 0.00067 31.1 6.8 27 284-310 177-203 (209)
65 PF04505 Dispanin: Interferon- 62.1 5.6 0.00012 30.6 1.9 29 266-294 48-76 (82)
66 PF12669 P12: Virus attachment 61.4 4.7 0.0001 29.0 1.3 8 303-310 20-27 (58)
67 PHA03054 IMV membrane protein; 60.0 14 0.0003 27.6 3.5 8 283-290 47-54 (72)
68 KOG3672 Histidine acid phospha 58.5 18 0.00038 36.0 5.0 48 283-330 12-60 (487)
69 PHA02975 hypothetical protein; 57.8 13 0.00029 27.6 3.1 11 280-290 40-50 (69)
70 KOG0812 SNARE protein SED5/Syn 57.2 1.4E+02 0.0031 28.5 10.5 75 221-298 235-309 (311)
71 PF14575 EphA2_TM: Ephrin type 57.1 17 0.00036 27.5 3.7 18 284-301 1-18 (75)
72 KOG1666 V-SNARE [Intracellular 57.1 31 0.00067 31.4 6.0 25 91-115 36-60 (220)
73 TIGR02833 spore_III_AB stage I 56.3 35 0.00077 29.8 6.2 21 268-288 137-157 (170)
74 PRK08307 stage III sporulation 56.3 35 0.00076 29.8 6.2 24 268-291 138-162 (171)
75 PF09548 Spore_III_AB: Stage I 55.3 38 0.00083 29.4 6.2 20 269-288 138-157 (170)
76 PF05531 NPV_P10: Nucleopolyhe 54.8 92 0.002 23.6 7.7 49 50-100 7-55 (75)
77 PF00523 Fusion_gly: Fusion gl 54.8 19 0.0004 37.0 4.7 30 253-282 436-465 (490)
78 PHA03240 envelope glycoprotein 54.2 11 0.00024 34.3 2.7 6 307-312 241-246 (258)
79 PF09125 COX2-transmemb: Cytoc 53.7 20 0.00044 23.3 3.0 19 282-300 14-32 (38)
80 PF06072 Herpes_US9: Alphaherp 53.6 43 0.00093 24.2 5.0 15 264-278 8-22 (60)
81 KOG1029 Endocytic adaptor prot 52.5 3.5E+02 0.0076 29.6 13.6 28 88-115 532-559 (1118)
82 PF06143 Baculo_11_kDa: Baculo 52.1 19 0.00042 27.9 3.3 7 269-275 20-26 (84)
83 PRK00295 hypothetical protein; 51.9 95 0.0021 22.9 7.6 44 222-265 7-50 (68)
84 KOG3970 Predicted E3 ubiquitin 51.7 29 0.00064 31.9 4.9 40 285-328 252-291 (299)
85 PF10814 DUF2562: Protein of u 51.6 1.4E+02 0.0031 24.9 9.6 30 256-285 63-92 (133)
86 PF11837 DUF3357: Domain of un 49.9 5.4 0.00012 32.2 0.0 12 281-292 25-36 (106)
87 TIGR02302 aProt_lowcomp conser 49.7 1.8E+02 0.0038 32.2 11.3 23 231-253 620-642 (851)
88 PRK02793 phi X174 lysis protei 48.9 1.1E+02 0.0024 22.8 7.6 44 221-264 9-52 (72)
89 smart00806 AIP3 Actin interact 48.4 3.1E+02 0.0066 27.7 18.2 58 87-155 213-270 (426)
90 PRK00736 hypothetical protein; 48.3 1.1E+02 0.0024 22.6 7.6 44 221-264 6-49 (68)
91 COG2991 Uncharacterized protei 48.1 29 0.00063 26.1 3.6 29 288-316 8-36 (77)
92 COG3064 TolA Membrane protein 47.6 26 0.00057 33.8 4.1 30 288-317 16-46 (387)
93 PHA00350 putative assembly pro 47.6 23 0.0005 35.4 4.0 6 325-330 261-266 (399)
94 PRK10884 SH3 domain-containing 47.4 2.2E+02 0.0047 25.8 14.4 41 233-273 117-157 (206)
95 PRK13865 type IV secretion sys 47.4 68 0.0015 29.5 6.8 25 284-308 41-65 (229)
96 PF13829 DUF4191: Domain of un 46.4 29 0.00064 31.8 4.2 24 268-291 10-33 (224)
97 PF00523 Fusion_gly: Fusion gl 46.3 16 0.00034 37.5 2.6 22 252-273 442-463 (490)
98 PRK02119 hypothetical protein; 46.3 1.2E+02 0.0027 22.6 7.8 43 220-262 9-51 (73)
99 PF00435 Spectrin: Spectrin re 46.1 1.2E+02 0.0026 22.4 10.6 28 44-71 38-65 (105)
100 PLN03160 uncharacterized prote 45.7 12 0.00026 34.1 1.6 18 283-300 39-56 (219)
101 PHA03049 IMV membrane protein; 45.6 28 0.00061 25.7 3.1 14 296-309 12-25 (68)
102 KOG0862 Synaptobrevin/VAMP-lik 45.5 2.4E+02 0.0052 25.8 9.8 36 221-256 135-170 (216)
103 PF15106 TMEM156: TMEM156 prot 45.3 19 0.00041 32.7 2.7 30 276-306 168-197 (226)
104 PF06783 UPF0239: Uncharacteri 45.2 58 0.0013 25.3 5.0 24 284-307 21-44 (85)
105 PF12669 P12: Virus attachment 45.2 28 0.00061 24.9 3.1 12 302-313 16-27 (58)
106 cd00193 t_SNARE Soluble NSF (N 44.9 97 0.0021 21.0 8.0 53 225-277 4-56 (60)
107 PF05399 EVI2A: Ectropic viral 43.7 18 0.00039 32.8 2.3 18 284-301 131-148 (227)
108 PRK09510 tolA cell envelope in 43.5 35 0.00076 33.9 4.5 39 283-322 14-52 (387)
109 PRK04406 hypothetical protein; 42.9 1.4E+02 0.0031 22.4 7.6 42 221-262 12-53 (75)
110 KOG3065 SNAP-25 (synaptosome-a 42.7 65 0.0014 30.5 6.0 46 228-273 87-132 (273)
111 PF10812 DUF2561: Protein of u 42.3 38 0.00083 30.5 4.1 27 282-308 62-89 (207)
112 PF06678 DUF1179: Protein of u 41.9 94 0.002 25.0 5.8 8 325-332 59-66 (103)
113 PF05781 MRVI1: MRVI1 protein; 41.5 1.1E+02 0.0023 31.8 7.7 21 44-64 196-216 (538)
114 PHA02675 ORF104 fusion protein 41.4 1.7E+02 0.0036 22.7 7.3 41 225-265 35-75 (90)
115 PHA02692 hypothetical protein; 40.6 39 0.00086 25.2 3.3 8 283-290 44-51 (70)
116 PF05546 She9_MDM33: She9 / Md 40.5 2.9E+02 0.0062 25.2 19.2 60 251-310 109-179 (207)
117 PF04210 MtrG: Tetrahydrometha 39.0 1.6E+02 0.0035 22.0 7.9 15 257-271 21-35 (70)
118 PF13779 DUF4175: Domain of un 38.9 2.3E+02 0.0051 31.1 10.3 27 227-253 581-607 (820)
119 PF00517 GP41: Retroviral enve 38.9 1E+02 0.0023 27.7 6.5 16 217-232 105-120 (204)
120 PF10168 Nup88: Nuclear pore c 38.9 5.4E+02 0.012 27.9 14.5 16 217-232 696-711 (717)
121 PTZ00478 Sec superfamily; Prov 38.6 1E+02 0.0022 23.7 5.4 60 251-311 14-73 (81)
122 KOG3202 SNARE protein TLG1/Syn 38.4 3.2E+02 0.0069 25.4 9.7 28 242-269 181-208 (235)
123 PF07412 Geminin: Geminin; In 38.3 1.2E+02 0.0027 27.3 6.8 76 187-263 100-175 (200)
124 PRK06870 secG preprotein trans 38.1 56 0.0012 24.5 4.0 18 294-311 12-29 (76)
125 PF11812 DUF3333: Domain of un 37.9 51 0.0011 28.5 4.2 16 276-291 8-24 (155)
126 KOG0994 Extracellular matrix g 37.7 7E+02 0.015 28.9 23.8 9 49-57 1417-1425(1758)
127 PHA02911 C-type lectin-like pr 37.5 1.2E+02 0.0026 27.5 6.5 14 267-280 13-27 (213)
128 PHA02673 ORF109 EEV glycoprote 37.5 51 0.0011 28.6 4.0 13 273-285 20-32 (161)
129 PF11239 DUF3040: Protein of u 37.0 59 0.0013 24.7 4.0 19 249-267 10-28 (82)
130 PHA03030 hypothetical protein; 36.8 25 0.00055 28.2 1.9 24 286-309 3-26 (122)
131 PHA03164 hypothetical protein; 36.8 33 0.00072 26.0 2.4 15 277-291 50-64 (88)
132 PF01519 DUF16: Protein of unk 36.7 2.2E+02 0.0049 22.9 7.6 43 220-262 53-95 (102)
133 COG4640 Predicted membrane pro 36.5 40 0.00088 33.5 3.7 12 284-295 52-63 (465)
134 PF01601 Corona_S2: Coronaviru 36.2 14 0.0003 38.6 0.4 28 44-71 256-283 (610)
135 PF06422 PDR_CDR: CDR ABC tran 36.1 61 0.0013 25.8 4.1 17 266-282 32-48 (103)
136 COG4698 Uncharacterized protei 36.1 39 0.00084 30.0 3.1 27 282-308 11-38 (197)
137 PRK03814 oxaloacetate decarbox 36.0 88 0.0019 24.3 4.8 12 284-295 14-25 (85)
138 PHA02650 hypothetical protein; 35.5 37 0.00079 26.0 2.5 25 280-304 42-66 (81)
139 COG1930 CbiN ABC-type cobalt t 35.4 54 0.0012 25.9 3.5 9 309-317 27-35 (97)
140 PF10661 EssA: WXG100 protein 35.1 56 0.0012 27.9 4.0 19 283-301 118-136 (145)
141 PHA02844 putative transmembran 34.8 40 0.00086 25.5 2.6 27 277-303 38-64 (75)
142 PF03908 Sec20: Sec20; InterP 34.7 2.1E+02 0.0046 22.0 12.0 10 291-300 76-85 (92)
143 KOG0365 Beta subunit of farnes 34.5 1.8E+02 0.0038 28.8 7.5 39 258-296 75-113 (423)
144 PF03904 DUF334: Domain of unk 34.0 3.8E+02 0.0083 24.7 24.2 35 133-167 69-103 (230)
145 PF04834 Adeno_E3_14_5: Early 34.0 1.2E+02 0.0026 24.2 5.3 10 283-292 23-32 (97)
146 PF01102 Glycophorin_A: Glycop 33.7 47 0.001 27.6 3.2 8 303-310 88-95 (122)
147 PF03408 Foamy_virus_ENV: Foam 33.7 54 0.0012 35.6 4.2 29 273-301 48-78 (981)
148 PHA02291 hypothetical protein 33.2 48 0.0011 26.9 3.0 33 282-315 4-38 (132)
149 PF10027 DUF2269: Predicted in 33.1 62 0.0013 27.3 3.9 32 275-306 119-150 (150)
150 PF11598 COMP: Cartilage oligo 32.9 92 0.002 21.3 3.9 28 224-251 5-32 (45)
151 PF08372 PRT_C: Plant phosphor 32.8 2.6E+02 0.0056 24.2 7.7 25 214-241 56-80 (156)
152 PLN02484 probable pectinestera 32.7 21 0.00046 37.4 1.2 8 281-288 29-36 (587)
153 COG1314 SecG Preprotein transl 32.2 61 0.0013 25.2 3.4 14 297-310 15-28 (86)
154 PF06682 DUF1183: Protein of u 31.6 50 0.0011 32.0 3.4 16 293-308 162-177 (318)
155 PF05957 DUF883: Bacterial pro 31.5 2.4E+02 0.0052 21.7 11.6 10 282-291 72-81 (94)
156 COG1459 PulF Type II secretory 31.4 2.1E+02 0.0045 28.6 7.9 54 211-265 299-352 (397)
157 PF04790 Sarcoglycan_1: Sarcog 30.7 60 0.0013 30.6 3.7 8 303-310 35-42 (264)
158 PF14812 PBP1_TM: Transmembran 30.7 3 6.5E-05 32.1 -4.0 8 279-286 62-69 (81)
159 PF10267 Tmemb_cc2: Predicted 30.6 5.6E+02 0.012 25.6 20.0 19 249-267 299-317 (395)
160 PF03100 CcmE: CcmE; InterPro 30.3 17 0.00037 30.3 0.0 7 279-285 3-9 (131)
161 PRK00846 hypothetical protein; 30.3 2.5E+02 0.0054 21.4 7.6 45 221-265 14-58 (77)
162 TIGR02120 GspF general secreti 29.7 5.2E+02 0.011 25.3 10.4 42 224-265 112-153 (399)
163 COG1315 Uncharacterized conser 29.6 3.2E+02 0.0069 28.3 8.7 74 43-116 406-486 (543)
164 PRK09400 secE preprotein trans 29.5 2.2E+02 0.0048 20.6 5.7 22 256-277 6-27 (61)
165 COG2443 Sss1 Preprotein transl 29.4 2.4E+02 0.0051 20.9 6.1 24 253-276 4-27 (65)
166 PF12751 Vac7: Vacuolar segreg 29.4 54 0.0012 32.5 3.3 6 285-290 304-309 (387)
167 TIGR02976 phageshock_pspB phag 29.0 57 0.0012 24.7 2.6 11 302-312 22-32 (75)
168 PHA03395 p10 fibrous body prot 28.8 2.8E+02 0.0062 21.6 7.4 56 51-112 8-63 (87)
169 KOG4684 Uncharacterized conser 28.7 67 0.0015 29.4 3.5 30 282-312 208-237 (275)
170 PHA03054 IMV membrane protein; 28.5 58 0.0012 24.4 2.5 22 280-301 41-62 (72)
171 TIGR03185 DNA_S_dndD DNA sulfu 28.3 7.3E+02 0.016 26.2 14.0 40 56-95 397-436 (650)
172 PF09788 Tmemb_55A: Transmembr 28.1 50 0.0011 30.9 2.6 6 285-290 199-204 (256)
173 TIGR01834 PHA_synth_III_E poly 28.1 5.2E+02 0.011 25.1 9.6 13 2-14 203-215 (320)
174 PRK10525 cytochrome o ubiquino 28.0 66 0.0014 31.1 3.6 18 296-313 56-73 (315)
175 PF04228 Zn_peptidase: Putativ 28.0 71 0.0015 30.6 3.8 7 302-308 51-57 (292)
176 PF10498 IFT57: Intra-flagella 27.9 6E+02 0.013 25.0 13.6 19 38-56 189-207 (359)
177 PRK03814 oxaloacetate decarbox 27.8 1.9E+02 0.0041 22.4 5.4 10 290-299 24-33 (85)
178 PF09164 VitD-bind_III: Vitami 27.3 1.1E+02 0.0025 22.5 3.8 15 175-189 26-40 (68)
179 PF11446 DUF2897: Protein of u 27.1 65 0.0014 22.9 2.5 7 302-308 21-27 (55)
180 PF05667 DUF812: Protein of un 26.9 7.8E+02 0.017 26.1 22.7 38 218-255 545-582 (594)
181 PF02706 Wzz: Chain length det 26.6 22 0.00047 29.4 0.0 6 283-288 16-21 (152)
182 PF04906 Tweety: Tweety; Inte 26.6 3E+02 0.0066 27.4 8.1 6 231-236 129-134 (406)
183 PRK01844 hypothetical protein; 26.1 75 0.0016 23.9 2.8 12 294-305 15-26 (72)
184 KOG3091 Nuclear pore complex, 26.1 7.4E+02 0.016 25.6 14.4 31 81-112 412-442 (508)
185 smart00502 BBC B-Box C-termina 26.1 3.2E+02 0.0069 21.3 8.3 66 210-275 21-88 (127)
186 PRK10404 hypothetical protein; 26.1 3.4E+02 0.0074 21.6 10.7 39 251-290 41-87 (101)
187 PRK13887 conjugal transfer pro 26.0 1.8E+02 0.0039 26.9 6.1 6 281-286 52-57 (250)
188 TIGR01478 STEVOR variant surfa 25.8 46 0.001 31.7 2.0 34 82-115 57-90 (295)
189 TIGR00701 conserved hypothetic 25.7 65 0.0014 27.3 2.8 25 284-308 118-142 (142)
190 KOG0994 Extracellular matrix g 25.7 1.1E+03 0.024 27.4 21.5 22 92-113 1585-1606(1758)
191 PF05739 SNARE: SNARE domain; 25.7 2.3E+02 0.0051 19.6 8.8 50 220-269 11-60 (63)
192 PHA03046 Hypothetical protein; 25.5 3.5E+02 0.0076 22.8 6.9 44 221-264 85-128 (142)
193 PRK00523 hypothetical protein; 25.4 79 0.0017 23.8 2.8 8 297-304 19-26 (72)
194 TIGR00810 secG protein translo 25.1 1.2E+02 0.0027 22.4 3.9 16 296-311 13-28 (73)
195 KOG3498 Preprotein translocase 25.1 2.1E+02 0.0045 21.1 4.8 26 251-276 2-27 (67)
196 PTZ00370 STEVOR; Provisional 24.9 49 0.0011 31.5 2.0 36 81-116 55-90 (296)
197 COG4238 Murein lipoprotein [Ce 24.6 3.2E+02 0.0069 20.8 6.5 32 248-279 39-70 (78)
198 KOG2678 Predicted membrane pro 24.6 5.6E+02 0.012 23.7 10.5 72 224-298 155-227 (244)
199 PHA02414 hypothetical protein 24.5 3.7E+02 0.008 21.5 8.3 44 221-264 30-73 (111)
200 PRK10573 type IV pilin biogene 24.4 6.7E+02 0.015 24.5 11.0 37 225-261 111-147 (399)
201 COG1580 FliL Flagellar basal b 24.3 1.2E+02 0.0027 26.2 4.3 25 278-302 13-37 (159)
202 KOG4552 Vitamin-D-receptor int 24.3 5.6E+02 0.012 23.5 10.0 20 214-233 82-101 (272)
203 PF09548 Spore_III_AB: Stage I 24.0 2.8E+02 0.006 24.0 6.5 17 273-289 145-161 (170)
204 TIGR00918 2A060602 The Eukaryo 23.9 1.6E+02 0.0035 33.7 6.1 7 302-308 1112-1118(1145)
205 PF05283 MGC-24: Multi-glycosy 23.8 71 0.0015 28.5 2.7 25 284-308 161-185 (186)
206 COG3736 VirB8 Type IV secretor 23.8 2.3E+02 0.0049 26.4 6.1 12 296-307 56-67 (239)
207 PRK11901 hypothetical protein; 23.7 1.3E+02 0.0028 29.2 4.6 21 281-301 34-54 (327)
208 PRK14710 hypothetical protein; 23.6 1E+02 0.0022 23.2 3.0 19 283-301 9-27 (86)
209 PF05597 Phasin: Poly(hydroxya 23.5 4.2E+02 0.009 22.2 7.2 27 74-100 103-129 (132)
210 COG3105 Uncharacterized protei 23.5 87 0.0019 26.3 3.0 25 288-312 10-34 (138)
211 PF09177 Syntaxin-6_N: Syntaxi 23.4 3.5E+02 0.0077 20.9 7.5 20 95-114 36-55 (97)
212 PF06388 DUF1075: Protein of u 23.1 1E+02 0.0023 26.4 3.5 28 281-308 91-118 (146)
213 PF11636 Troponin-I_N: Troponi 23.0 29 0.00063 22.1 0.1 15 317-331 8-22 (36)
214 KOG0972 Huntingtin interacting 22.7 7E+02 0.015 24.1 10.6 29 87-115 230-258 (384)
215 PF03653 UPF0093: Uncharacteri 22.6 89 0.0019 26.5 3.1 24 284-307 124-147 (147)
216 PRK11638 lipopolysaccharide bi 22.4 85 0.0018 30.7 3.2 27 282-308 22-48 (342)
217 KOG3208 SNARE protein GS28 [In 22.3 6.2E+02 0.013 23.3 22.8 39 237-275 166-204 (231)
218 PF14914 LRRC37AB_C: LRRC37A/B 22.2 2.7E+02 0.0058 24.0 5.7 13 245-257 69-81 (154)
219 PF06667 PspB: Phage shock pro 22.2 1.1E+02 0.0025 23.1 3.2 11 302-312 22-32 (75)
220 smart00397 t_SNARE Helical reg 22.0 2.7E+02 0.0058 19.0 9.3 53 223-275 8-60 (66)
221 PF04100 Vps53_N: Vps53-like, 22.0 7.8E+02 0.017 24.3 17.9 103 40-155 18-125 (383)
222 TIGR01433 CyoA cytochrome o ub 21.4 1.2E+02 0.0026 27.8 3.8 8 305-312 53-60 (226)
223 PF06738 DUF1212: Protein of u 21.3 1.8E+02 0.0039 25.3 4.9 32 255-286 75-106 (193)
224 PF03233 Cauli_AT: Aphid trans 21.2 5.6E+02 0.012 22.4 9.0 17 36-52 79-95 (163)
225 PF07423 DUF1510: Protein of u 21.1 97 0.0021 28.3 3.1 29 280-308 8-36 (217)
226 PF00429 TLV_coat: ENV polypro 21.0 4.1E+02 0.0088 27.9 8.1 26 220-245 435-460 (561)
227 PF07432 Hc1: Histone H1-like 20.7 4.3E+02 0.0093 21.8 6.4 44 232-275 2-45 (123)
228 PF03915 AIP3: Actin interacti 20.7 8.9E+02 0.019 24.5 16.5 56 88-154 210-265 (424)
229 COG4371 Predicted membrane pro 20.6 89 0.0019 29.3 2.8 27 302-328 118-147 (334)
230 PF01105 EMP24_GP25L: emp24/gp 20.6 25 0.00054 29.8 -0.8 20 219-238 111-130 (183)
231 PTZ00208 65 kDa invariant surf 20.6 1.5E+02 0.0033 29.6 4.5 18 50-67 69-86 (436)
232 PF05802 EspB: Enterobacterial 20.5 6.8E+02 0.015 23.9 8.5 39 222-260 43-85 (317)
233 TIGR02492 flgK_ends flagellar 20.4 2.2E+02 0.0048 27.3 5.6 16 229-244 294-309 (322)
234 PF01102 Glycophorin_A: Glycop 20.2 86 0.0019 26.1 2.4 17 296-312 78-94 (122)
235 PHA00407 phage lambda Rz1-like 20.1 1.7E+02 0.0037 22.3 3.7 15 281-295 28-42 (84)
236 COG1459 PulF Type II secretory 20.0 2.8E+02 0.0061 27.7 6.4 41 224-264 109-149 (397)
237 PF02038 ATP1G1_PLM_MAT8: ATP1 20.0 54 0.0012 22.9 0.9 17 293-309 24-40 (50)
No 1
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-54 Score=402.50 Aligned_cols=291 Identities=41% Similarity=0.657 Sum_probs=256.5
Q ss_pred CCccccchhhhhhcccCCCCCCCCCCccccc----cCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 019985 1 MNDLFSGSFSRFRSEQASPDRPHHHTTIQMT----ENPNSTGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTL 76 (332)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----~~~~~~~~~~~~~F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~ 76 (332)
|||+++.+|.++.+ +|+|+. ..+++.++..|+.||.+|++|+..|+.|...+.+|..+|.+. +
T Consensus 1 M~d~~~~~~~~~~~-----------~~~e~~~~~~~~~~~~~~~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~--l 67 (297)
T KOG0810|consen 1 MNDRLSELLARSVS-----------EDNELDDVEGHTGSADGDSNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKS--L 67 (297)
T ss_pred CccccHHHHcCchh-----------hcccccccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH--h
Confidence 89999999998872 233333 222344558899999999999999999999999999999655 4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 77 HNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQ 156 (332)
Q Consensus 77 ~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~~~r~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~fq~~Q~ 156 (332)
+++...+.++++|+.++.++.+.++.|+.+|+.+++++...+..+.| ++..|+|++++..++++|.++|.+|+.+|.
T Consensus 68 ~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~---~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~ 144 (297)
T KOG0810|consen 68 HSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRS---SAGLRTRRTQTSALSKKLKELMNEFNRTQS 144 (297)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC---CccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778999999999999999999999999999998875433333 345789999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCChhHHHHHhhcCCchhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019985 157 RISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVF 236 (332)
Q Consensus 157 ~~~~~~k~~~krr~~~i~~~~~seeeie~~i~~g~~~~~~q~~l~~~~~~q~~~~l~~i~~R~~ei~~Ie~~i~eL~~lf 236 (332)
.|+.+|+++++|||..+.+..+++++++.|+++|+++.|++.++. +++++++++.++++||.+|++||++|.|||+||
T Consensus 145 ~~r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~--~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlF 222 (297)
T KOG0810|consen 145 KYREEYKERIQRQLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQ--DRGQAKQTLAEIQERHDEIKKLEKSIRELHQLF 222 (297)
T ss_pred HHHHHHHHHHHHHHhhhCCCcCChHHHHHHHHCCChHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998777665548999999999999999999999887 455678999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhccccC
Q 019985 237 LDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAITILLIIILFVVLFTVKPWDN 309 (332)
Q Consensus 237 ~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~i~~~iiii~~i~~~~~~~~~~ 309 (332)
.|||.||+.||+|||+||+||.+|.+||++|..++++|.+||+++|||+||+|++++|+++|+++++++||-.
T Consensus 223 lDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~v~~i~~~~~~ 295 (297)
T KOG0810|consen 223 LDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVLVVVIVVPLVL 295 (297)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHHhhhhcccccc
Confidence 9999999999999999999999999999999999999999999999999999999888888888888888753
No 2
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.3e-37 Score=273.14 Aligned_cols=255 Identities=23% Similarity=0.372 Sum_probs=221.8
Q ss_pred ccccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 27 TIQMTENPNSTGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIR 106 (332)
Q Consensus 27 ~~e~~~~~~~~~~~~~~~F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~ 106 (332)
-|||.+..+| .-|..++..|+.++..++..+.++..+|..++...+......+++.|+..+.++..+-..++..
T Consensus 11 ~~emie~~~g------~~f~~~i~si~~n~s~~e~~i~qi~~~h~d~L~Ev~e~~~~~~~~~ldnf~s~t~~Lq~~~k~d 84 (280)
T COG5074 11 IYEMIETLNG------VTFMNKILSINKNLSVYEKEINQIDNLHKDLLTEVFEEQSRKLRRSLDNFSSQTTDLQRNLKKD 84 (280)
T ss_pred hhhhhhhhhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5888886423 3466799999999999999999999999999988887788889999999999999999999999
Q ss_pred HHHHHHhhHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCChhHHHHH
Q 019985 107 LEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRL 186 (332)
Q Consensus 107 Lk~l~~~~~~~r~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~krr~~~i~~~~~seeeie~~ 186 (332)
++..+..... +.-|+.|-.+.+.+|.+++++|+.++..|++.|+++.+|||. |..|++|+++++..
T Consensus 85 i~~~e~~~ih-------------l~~k~aQae~~r~Kf~~~I~~yr~i~~~yree~~e~~rrQy~-Ia~P~ATEdeve~a 150 (280)
T COG5074 85 IKSAERDGIH-------------LANKQAQAENVRQKFLKLIQDYRIIDSNYREEEKEQARRQYI-IAQPEATEDEVEAA 150 (280)
T ss_pred HHHHHhcccc-------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh-hcCCccchHHHHHH
Confidence 9888765321 234567888899999999999999999999999999987664 66899999999999
Q ss_pred hhcCCchhHHHHHHH-HhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 019985 187 ISTGESETFLQKAIQ-EQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVR 265 (332)
Q Consensus 187 i~~g~~~~~~q~~l~-~~~~~q~~~~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~ 265 (332)
+++.+++++|.+++. ..++++++.+|.++++||.+|++||++|.||.+||+||+.||.+|.+++|.|+.|+..+..+|+
T Consensus 151 Ind~nG~qvfsqalL~anr~geAktaL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~ 230 (280)
T COG5074 151 INDVNGQQVFSQALLNANRRGEAKTALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVE 230 (280)
T ss_pred hcccchHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHH
Confidence 988777666665554 5677889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhchh--hHHHHHHHHHHHHHHHHHH
Q 019985 266 GGTERLQTARKYQLSTR--KWTCIAITILLIIILFVVL 301 (332)
Q Consensus 266 ~g~~~L~kA~~~qk~~r--k~~c~~i~~~iiii~~i~~ 301 (332)
.|+.++.+|.+|.+++| ||.||+||+++|+++++++
T Consensus 231 ~g~~h~d~AvksaRaaRkkki~c~gI~~iii~viv~vv 268 (280)
T COG5074 231 QGVGHTDKAVKSARAARKKKIRCYGICFIIIIVIVVVV 268 (280)
T ss_pred HhhhhHHHHHHHHHHHHhcceehhhhHHHHHHHHHHHH
Confidence 99999999999999987 5788888777666555444
No 3
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-31 Score=245.21 Aligned_cols=268 Identities=22% Similarity=0.279 Sum_probs=203.2
Q ss_pred CCCCCCCCccccccCC------C-CC--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHH
Q 019985 19 PDRPHHHTTIQMTENP------N-ST--GGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRM 89 (332)
Q Consensus 19 ~~~~~~~~~~e~~~~~------~-~~--~~~~~~~F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl 89 (332)
.++..++.++||+... | +. .+..+|.|...+++|+..+..++.++++|.+.|.+.+ .++-.|..+-...|
T Consensus 24 ~~~~~~d~~~e~~~~lv~~~~~~~~~~~~d~lpP~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl-~PsF~Dk~ede~~I 102 (305)
T KOG0809|consen 24 GDRSGDDPVIEMATSLVNEAEEGKTVSDEDGLPPAWVDVAEEVDYYLSRVRRKIDELGKAHAKHL-RPSFSDKREDEHEI 102 (305)
T ss_pred ccccCcchhHHhHhccccchhcCCccccccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCccchhHHHH
Confidence 3444478899998221 2 22 2345889999999999999999999999999999988 45444545556789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 90 DADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSS-SDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQR 168 (332)
Q Consensus 90 ~~l~~~i~~~~~~Ik~~Lk~l~~~~~~~r~~~~~~~~s~-~~rir~~q~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~kr 168 (332)
+.++.+|+.+.+.+.+.|+.+....+ ..++ +..+++|.+..+..+++.+..+|+..|..|.+..+.+-.+
T Consensus 103 E~ltq~Itqll~~cqk~iq~~~a~~n---------~~~~~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~ 173 (305)
T KOG0809|consen 103 EELTQEITQLLQKCQKLIQRLSASLN---------QLSPSERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREEN 173 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC---------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhc
Confidence 99999999999999999998866422 1233 4568889999999999999999999998887666554332
Q ss_pred --hhhhccCCCCChhHHHHHhhcCCchhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 019985 169 --RYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQ 246 (332)
Q Consensus 169 --r~~~i~~~~~seeeie~~i~~g~~~~~~q~~l~~~~~~q~~~~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Q 246 (332)
.|.. ..+..+..++...|....+++++-......-..+.+|.+||.+|.++|.||++||.||+.||.+|
T Consensus 174 ~~~~e~---------~~~~~~~~~dd~d~~~~~~qe~ql~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQ 244 (305)
T KOG0809|consen 174 SQEYED---------SLDNTVDLPDDEDFSDRTFQEQQLMLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQ 244 (305)
T ss_pred ccchhh---------hccccccCcchhhhhhhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1211 11122222222223222221111111234556789999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhc
Q 019985 247 GEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAITILLIIILFVVLFTVK 305 (332)
Q Consensus 247 ge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~i~~~iiii~~i~~~~~~ 305 (332)
|.+||||||||+++..+|+.|.++|.||..|||+++|+.||++++++||++++++|+.+
T Consensus 245 GtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~l~ii~llvllilk~ 303 (305)
T KOG0809|consen 245 GTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLTLLIIALLVLLILKK 303 (305)
T ss_pred ccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999988887776666655443
No 4
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-28 Score=228.32 Aligned_cols=251 Identities=21% Similarity=0.284 Sum_probs=189.2
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019985 35 NSTGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSN 114 (332)
Q Consensus 35 ~~~~~~~~~~F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~ 114 (332)
|+.+......|-....+|...|..+...+..|.+.+. ..+++.|..+++++++.....+.++.+.+...|+.+....
T Consensus 9 ~~~~~~~~~~~~~l~~~i~~~i~~i~~~~~~l~r~~~---~lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~ 85 (269)
T KOG0811|consen 9 GGSTQEEPFDFQQLAQEIAANIQRINQQVLSLLRFLN---SLGTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTLR 85 (269)
T ss_pred CCCCcCCCCcHhHHHHHHHHHHHHHhHHHHHHHHHHH---HcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444466678999999999999999999988876654 4677788888999999999999999999999999986531
Q ss_pred HhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCC---hhHHHHHhhcCC
Q 019985 115 AANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPD---EKTLDRLISTGE 191 (332)
Q Consensus 115 ~~~r~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~krr~~~i~~~~~s---eeeie~~i~~g~ 191 (332)
.+...+..+.+...|.+.|..++++|+.+|.......+.-...+ +...+ +++-....+.+.
T Consensus 86 -----------~~~~~~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek~~~~a~-----~s~~s~~~~~~~~~~~~~~~ 149 (269)
T KOG0811|consen 86 -----------LESDLRQLKIQLDKLVDEFSAALKEFQKVQRKSAEREKIPMVAR-----GSQNSQQLDEESPRVDELSN 149 (269)
T ss_pred -----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccccccc-----ccccchhhhhhhhhhhhhhc
Confidence 13456888899999999999999999999976655443111001 11111 111111111111
Q ss_pred chhHHHHH--HHHhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 019985 192 SETFLQKA--IQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTE 269 (332)
Q Consensus 192 ~~~~~q~~--l~~~~~~q~~~~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~ 269 (332)
.....+.. .+.+....+...+..+++|.+.|.+||..|.||++||+||+.||++||++||.||+||++|..||+.|+.
T Consensus 150 ~~~~~~~q~e~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~ 229 (269)
T KOG0811|consen 150 NGSQSQQQLEEQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTE 229 (269)
T ss_pred cchhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHH
Confidence 11111111 1111111123456678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHh
Q 019985 270 RLQTARKYQLSTRKWTCIAITILLIIILFVVLFTV 304 (332)
Q Consensus 270 ~L~kA~~~qk~~rk~~c~~i~~~iiii~~i~~~~~ 304 (332)
+|.+|.+|++++|||.|++++++++++++|.++++
T Consensus 230 ~L~kA~~yq~~~~k~~~~ll~v~~~v~lii~l~i~ 264 (269)
T KOG0811|consen 230 NLRKAAKYQRKARKKKCILLLVGGPVGLIIGLIIA 264 (269)
T ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888888777544
No 5
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.89 E-value=1.1e-20 Score=172.45 Aligned_cols=242 Identities=19% Similarity=0.256 Sum_probs=144.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 019985 39 GVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANR 118 (332)
Q Consensus 39 ~~~~~~F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~~~r 118 (332)
+...|-|......|...+..+..++..+.....+...- ...+..+-.+.++.+...++....++.+-++........
T Consensus 30 ~~l~p~~i~~~~~v~~~l~~vrr~~~~l~~~y~k~~~p-~f~~k~~k~~ei~~L~~kv~~~l~~~~ki~~~~~~~~~s-- 106 (283)
T COG5325 30 DALTPTFILSAASVDQELTAVRRSISRLGKVYAKHTEP-SFSDKSEKEDEIDELSKKVNQDLQRCEKILKTKYKNLQS-- 106 (283)
T ss_pred hccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 45677788999999999999999999987766654332 222222222334444433333333333333222111110
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hh--hccCCC-CChhHHHHHhhcCCchh
Q 019985 119 SLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRR-YY--TVTGEN-PDEKTLDRLISTGESET 194 (332)
Q Consensus 119 ~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~krr-~~--~i~~~~-~seeeie~~i~~g~~~~ 194 (332)
......|...+...+..++.+|+....-.+....+. .+ ...+.. ..+++-+........+.
T Consensus 107 ---------------~~~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~~k~l~~~~~~~~~l~eee~e~~~~~~~sq~ 171 (283)
T COG5325 107 ---------------SFLQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFLRNKNNDQHPLEEEEDEESLSSLGSQQ 171 (283)
T ss_pred ---------------HHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHhcccccCchhhhhhhhhhhccchhh
Confidence 001234444444555555555544432222222110 11 111111 22223233333222222
Q ss_pred HHH-HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 195 FLQ-KAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQT 273 (332)
Q Consensus 195 ~~q-~~l~~~~~~q~~~~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~k 273 (332)
..+ +.+... +.......+.+|.++|.+|+++|.||++||.||+++|.+||+.||+||+|++++..|++.|+++|.+
T Consensus 172 ~lqq~~l~~e---e~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~k 248 (283)
T COG5325 172 TLQQQGLSNE---ELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEK 248 (283)
T ss_pred HHHHhhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHH
Confidence 222 222211 2223334489999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 019985 274 ARKYQLSTRKWTCIAITILLIIILFVVL 301 (332)
Q Consensus 274 A~~~qk~~rk~~c~~i~~~iiii~~i~~ 301 (332)
|..|+|+.+||..|++++++|+.+++.+
T Consensus 249 A~~hqrrt~k~~~~~Llil~vv~lfv~l 276 (283)
T COG5325 249 APAHQRRTKKCRFYLLLILLVVLLFVSL 276 (283)
T ss_pred hHHHHhhhccchhhHHHHHHHHHHHHHH
Confidence 9999999999876666666555554443
No 6
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=99.86 E-value=3.9e-20 Score=158.50 Aligned_cols=149 Identities=30% Similarity=0.506 Sum_probs=131.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCC
Q 019985 42 LDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLP 121 (332)
Q Consensus 42 ~~~F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~~~r~~~ 121 (332)
|+.||..|+.|+.+|..|+.++..|+.+|...+...+ ..+.++.+|+.++.+++.+++.|+..|+.|+..+....
T Consensus 1 ~~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~--~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~--- 75 (151)
T cd00179 1 LEEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPD--ADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNE--- 75 (151)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 6899999999999999999999999999998877665 45678999999999999999999999999988764321
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCChhHHHHHhhcCCchhHHH
Q 019985 122 GCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQ 197 (332)
Q Consensus 122 ~~~~~s~~~rir~~q~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~krr~~~i~~~~~seeeie~~i~~g~~~~~~q 197 (332)
..++++..|++++++.+|+++|.++|.+|+.+|..|+..||+++.|+|. |.+|++||+|+++++++|+++.|++
T Consensus 76 -~~~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~-i~~~~~tdeei~~~~~~~~~~~~~~ 149 (151)
T cd00179 76 -ALNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLE-ITGGEATDEELEDMLESGNSEIFTS 149 (151)
T ss_pred -ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCChHHHHHHHHcCChhhhcC
Confidence 1225678999999999999999999999999999999999999998765 5589999999999999997777765
No 7
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.4e-16 Score=146.22 Aligned_cols=242 Identities=18% Similarity=0.237 Sum_probs=156.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcC
Q 019985 40 VNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRS 119 (332)
Q Consensus 40 ~~~~~F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~~~r~ 119 (332)
..-.+|...+..|..+|.....++++|..+.++.....+. ..+|.+++.-|+..|..++..+..+..
T Consensus 38 ~~~seF~~~A~~Ig~~is~T~~kl~kLa~lAKrks~f~Dr-------------~VeI~eLT~iikqdi~sln~~i~~Lqe 104 (311)
T KOG0812|consen 38 SQGSEFNKKASRIGKEISQTGAKLEKLAQLAKRKSLFDDR-------------PVEIQELTFIIKQDITSLNSQIAQLQE 104 (311)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCc-------------chhhHHHHHHHhcchHHHHHHHHHHHH
Confidence 3345999999999999999999999999998876554431 112233333344433333333222111
Q ss_pred C---CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-------CC----CChhHHHH
Q 019985 120 L---PGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTG-------EN----PDEKTLDR 185 (332)
Q Consensus 120 ~---~~~~~~s~~~rir~~q~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~krr~~~i~~-------~~----~seeeie~ 185 (332)
+ .+..++......-++++..|..++..+...|+.+..--....+..-.|+.....+ |- +..+....
T Consensus 105 i~~~~gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dkfs~~~a~~~a~p~~n~~a~~~~~~~ 184 (311)
T KOG0812|consen 105 IVKANGNLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDKFSASYASLNANPVSNSAARLHPLKL 184 (311)
T ss_pred HHHHhccccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHhccccCCCCCcccCcccccCCchhh
Confidence 0 1111111112344778899999999999999998655444444432333322221 10 01110111
Q ss_pred H-------------hhcCCch--hHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHH
Q 019985 186 L-------------ISTGESE--TFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQL 250 (332)
Q Consensus 186 ~-------------i~~g~~~--~~~q~~l~~~~~~q~~~~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~i 250 (332)
+ ++.|.++ +..|-.+ .....+++++|...++.||.+|.||.+||.+||+||.+|||++
T Consensus 185 l~~~~~~~sq~~~~ln~gd~~~~qqqQm~l-------l~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i 257 (311)
T KOG0812|consen 185 LVDPKDEASQDVESLNMGDSSNPQQQQMAL-------LDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETI 257 (311)
T ss_pred hcCchhhcccccccccccCCCCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1112111 1111111 1223578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 019985 251 DDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAITILLIIILFVVL 301 (332)
Q Consensus 251 d~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~i~~~iiii~~i~~ 301 (332)
.|||+||+.+..+++.|..+|.|....-+++|++++-++.+++|+.+|+++
T Consensus 258 ~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflvfvl 308 (311)
T KOG0812|consen 258 QRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLVFVL 308 (311)
T ss_pred HHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998887776666555555555444
No 8
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=99.57 E-value=1.6e-13 Score=112.39 Aligned_cols=116 Identities=34% Similarity=0.550 Sum_probs=100.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCC
Q 019985 41 NLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSL 120 (332)
Q Consensus 41 ~~~~F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~~~r~~ 120 (332)
+|+.||..|++|+.+|..|+.++..|+.+|.+.+..++ ..+.++.+|+.++.++..+++.|+..|+.|+..+...+
T Consensus 2 ~~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~-- 77 (117)
T smart00503 2 NLDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPD--ADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENR-- 77 (117)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc--
Confidence 58999999999999999999999999999999877655 34678899999999999999999999999988765321
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 121 PGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYR 163 (332)
Q Consensus 121 ~~~~~~s~~~rir~~q~~~L~~~f~~~~~~fq~~Q~~~~~~~k 163 (332)
. .++++.|++++++..|+++|+.+|.+|+.+|..|...||
T Consensus 78 -~--~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k 117 (117)
T smart00503 78 -A--SGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYREREK 117 (117)
T ss_pred -c--cCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1 135678999999999999999999999999988876553
No 9
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.46 E-value=6.3e-13 Score=97.43 Aligned_cols=63 Identities=43% Similarity=0.646 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019985 217 ERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQL 279 (332)
Q Consensus 217 ~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk 279 (332)
+|+++|..|+.+|.+|++||.+|+.+|.+|+++||+|++||+.|..++.+|+.+|.+|.+|+|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~k 63 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 588999999999999999999999999999999999999999999999999999999999986
No 10
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=99.39 E-value=9.4e-12 Score=99.02 Aligned_cols=103 Identities=25% Similarity=0.425 Sum_probs=89.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCC
Q 019985 41 NLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSL 120 (332)
Q Consensus 41 ~~~~F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~~~r~~ 120 (332)
+|+.||.+|++|+..|..|+.++++|..+|.+.+..++. +..++.+|+.++.+|+.+++.|+.+|+.|+..+...
T Consensus 1 ~~~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~--d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~--- 75 (103)
T PF00804_consen 1 FMPEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQ--DSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDS--- 75 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---
Confidence 489999999999999999999999999999999888773 367889999999999999999999999999875421
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 019985 121 PGCGPGSSSDRTRTSVVNGLRKKLKDSM 148 (332)
Q Consensus 121 ~~~~~~s~~~rir~~q~~~L~~~f~~~~ 148 (332)
.+..+.+.+.|++++++.+|+.+|+++|
T Consensus 76 ~~~~~~~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 76 EGEEPSSNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp HCTT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 1234556788999999999999999987
No 11
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.27 E-value=2e-11 Score=87.89 Aligned_cols=59 Identities=42% Similarity=0.656 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 216 QERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTA 274 (332)
Q Consensus 216 ~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA 274 (332)
++|++++..|+.+|.+|+.||.+|+.+|.+|+++||+|++|++.+..++..|..+|.+|
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999999999999999999875
No 12
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=4.1e-08 Score=89.85 Aligned_cols=228 Identities=17% Similarity=0.249 Sum_probs=137.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCC
Q 019985 41 NLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSL 120 (332)
Q Consensus 41 ~~~~F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~~~r~~ 120 (332)
.++.||....++..-.+.++.+..+...+-.. .. .+.......|. ..+......+...+--+.+..
T Consensus 4 ~~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~---~~--~~~~~~t~~lr---~~i~~~~edl~~~~~il~~~~------ 69 (235)
T KOG3202|consen 4 SEDPFFRVKNETLKLSEEIQGLYQRRSELLKD---TG--SDAEELTSVLR---RSIEEDLEDLDELISILERNP------ 69 (235)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---cc--chhHHHHHHHH---HHhHHHHHHHHHHHHHHHhCc------
Confidence 34568888888888888888877776655433 11 11111111121 122222233333332232211
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCChhHHHHHhh-cCCchhHHHHH
Q 019985 121 PGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLIS-TGESETFLQKA 199 (332)
Q Consensus 121 ~~~~~~s~~~rir~~q~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~krr~~~i~~~~~seeeie~~i~-~g~~~~~~q~~ 199 (332)
...+.+..+.+-|+..+..+..++..+-..|.. ..+... .-|.. ..+++..+...+.+-. .|.+ +.+.
T Consensus 70 ~~~~ide~El~~R~~~i~~lr~q~~~~~~~~~~--~~~~~~----~~r~~--l~~~~~~~~~~~~~~~~~~~D--~v~~- 138 (235)
T KOG3202|consen 70 SKFGIDEFELSRRRRFIDNLRTQLRQMKSKMAM--SGFANS----NIRDI--LLGPEKSPNLDEAMSRASGLD--NVQE- 138 (235)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccc----cchhh--hcCCCCCCchhhhHHHhhccC--cHHH-
Confidence 112233446678899999999888887777765 112111 11111 2244443321122211 1211 0111
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019985 200 IQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQL 279 (332)
Q Consensus 200 l~~~~~~q~~~~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk 279 (332)
+ ....-..+++.++.+..|+.+|.-++.|-..++..+.+||.+||..++.++.++..+..+...|.+..+ .+
T Consensus 139 ~-------~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~-~~ 210 (235)
T KOG3202|consen 139 I-------VQLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR-MA 210 (235)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 0 011123468888999999999999999999999999999999999999999999999999999999998 44
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q 019985 280 STRKWTCIAITILLIIILFVVL 301 (332)
Q Consensus 280 ~~rk~~c~~i~~~iiii~~i~~ 301 (332)
+.+.+||+++++++++++++++
T Consensus 211 s~~~~~~~il~l~~~~~lvv~i 232 (235)
T KOG3202|consen 211 SQCSQWCAILLLVGLLLLVVII 232 (235)
T ss_pred ccccchhHHHHHHHHHHHHHHH
Confidence 4555666666655555555443
No 13
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.16 E-value=2.5e-10 Score=83.56 Aligned_cols=63 Identities=40% Similarity=0.597 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 212 INEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTA 274 (332)
Q Consensus 212 l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA 274 (332)
...+++|+++|..|+..|.+|++||.+|+.+|.+|+++||+|+++++.+..++..|..+|.+|
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 456889999999999999999999999999999999999999999999999999999998764
No 14
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.00015 Score=68.53 Aligned_cols=86 Identities=22% Similarity=0.288 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHH
Q 019985 210 DTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAI 289 (332)
Q Consensus 210 ~~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~i 289 (332)
..++...+-.+++..|++.|.|+..|-.-|+..|-+|...||.|-+++..+.+||..|++.|.+|.+...+.|+|+.+++
T Consensus 222 ~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~l 301 (316)
T KOG3894|consen 222 RLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFL 301 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHH
Confidence 45667788889999999999999999999999999999999999999999999999999999999999998899887776
Q ss_pred HHHHHH
Q 019985 290 TILLII 295 (332)
Q Consensus 290 ~~~iii 295 (332)
+++-.+
T Consensus 302 lvlsf~ 307 (316)
T KOG3894|consen 302 LVLSFS 307 (316)
T ss_pred HHHHHH
Confidence 554433
No 15
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=98.40 E-value=1.2e-05 Score=64.24 Aligned_cols=99 Identities=16% Similarity=0.283 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCChhHH
Q 019985 52 VKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDR 131 (332)
Q Consensus 52 I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~~~r~~~~~~~~s~~~r 131 (332)
|...|..|...+..|+++.. .++++.|..+++++|+.++..+..+++.+...|+.+.... ......+
T Consensus 1 is~~l~~in~~v~~l~k~~~---~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~----------~~~~~~~ 67 (102)
T PF14523_consen 1 ISSNLFKINQNVSQLEKLVN---QLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLS----------SDRSNDR 67 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHH---HH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH--------------HHH
T ss_pred CchHHHHHHHHHHHHHHHHH---HhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hhhhhhH
Confidence 45667777777777766544 3567789999999999999999999999999999987641 1234567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 132 TRTSVVNGLRKKLKDSMESFNELRQRISSEYR 163 (332)
Q Consensus 132 ir~~q~~~L~~~f~~~~~~fq~~Q~~~~~~~k 163 (332)
..+.+...|++.|..++++|+.+|..|.+..+
T Consensus 68 ~~k~~~~KL~~df~~~l~~fq~~q~~~~~~~k 99 (102)
T PF14523_consen 68 QQKLQREKLSRDFKEALQEFQKAQRRYAEKEK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77889999999999999999999987765544
No 16
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.00037 Score=56.58 Aligned_cols=81 Identities=21% Similarity=0.396 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 019985 216 QERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAITILLII 295 (332)
Q Consensus 216 ~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~i~~~iii 295 (332)
.|-.+.+..|...|.-|..+--+++.-|..|..+||.+++..+.+..........++.-.+. ..++.+||.+++++|.
T Consensus 32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~--sg~~l~~~m~~f~lV~ 109 (118)
T KOG3385|consen 32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR--SGISLLCWMAVFSLVA 109 (118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHH
Confidence 34455788999999999999999999999999999999999999999999999999876665 6678899887766554
Q ss_pred HHH
Q 019985 296 ILF 298 (332)
Q Consensus 296 i~~ 298 (332)
.++
T Consensus 110 ~fi 112 (118)
T KOG3385|consen 110 FFI 112 (118)
T ss_pred HHH
Confidence 333
No 17
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.26 E-value=0.012 Score=45.82 Aligned_cols=48 Identities=13% Similarity=0.337 Sum_probs=35.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 019985 220 DAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGG 267 (332)
Q Consensus 220 ~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g 267 (332)
+.+.+|...+.++..+..+=-..+.+-|+-|+.+++..+.-......-
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F 50 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQF 50 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHH
Confidence 357778888888888888777778889999999988765555444433
No 18
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.0078 Score=49.18 Aligned_cols=38 Identities=16% Similarity=0.379 Sum_probs=29.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQ 258 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~ 258 (332)
.++.++..+.|+..++.+=-.-|-+-|+-||.+++-.+
T Consensus 30 k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad 67 (116)
T KOG0860|consen 30 KLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRAD 67 (116)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHH
Confidence 56677777888888888877778888888888886543
No 19
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.93 E-value=0.36 Score=45.23 Aligned_cols=86 Identities=12% Similarity=0.200 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q 019985 212 INEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAITI 291 (332)
Q Consensus 212 l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~i~~ 291 (332)
..+|..=++.|.+|..-..+|..+..+=+.+|.-=...|+++-+|+..|.....+|..+=+ ..++.+.+..+++++
T Consensus 194 ~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqr----rt~k~~~~~Llil~v 269 (283)
T COG5325 194 DEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQR----RTKKCRFYLLLILLV 269 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHh----hhccchhhHHHHHHH
Confidence 4567778889999999999999999999999999999999999999999999999998764 445667766666666
Q ss_pred HHHHHHHHHH
Q 019985 292 LLIIILFVVL 301 (332)
Q Consensus 292 ~iiii~~i~~ 301 (332)
+++++++++.
T Consensus 270 v~lfv~l~~k 279 (283)
T COG5325 270 VLLFVSLIKK 279 (283)
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 20
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=96.82 E-value=0.019 Score=53.45 Aligned_cols=80 Identities=16% Similarity=0.287 Sum_probs=55.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAITILLIIILFVV 300 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~i~~~iiii~~i~ 300 (332)
++..+-+++.+= ..-++..+.+-..+|++.+..++.....+......|+.- .+++.+||.|++++++++++|++
T Consensus 171 em~~La~~LK~~---s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~---~~~~~~~~~~~~i~~v~~~Fi~m 244 (251)
T PF09753_consen 171 EMLSLARQLKEN---SLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEH---SSKSWGCWTWLMIFVVIIVFIMM 244 (251)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccHHHHHHHHHHHHHHHHH
Confidence 444444444444 444566699999999999999999999999999888664 33344477777666666666665
Q ss_pred HHHhcc
Q 019985 301 LFTVKP 306 (332)
Q Consensus 301 ~~~~~~ 306 (332)
++++++
T Consensus 245 vl~iri 250 (251)
T PF09753_consen 245 VLFIRI 250 (251)
T ss_pred HHHhee
Confidence 556554
No 21
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.81 E-value=0.4 Score=43.95 Aligned_cols=91 Identities=11% Similarity=0.134 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh----HHHH-HH
Q 019985 215 IQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRK----WTCI-AI 289 (332)
Q Consensus 215 i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk----~~c~-~i 289 (332)
.+.--.|++.=.+.|..|-.+..+|..|...=.+++-.=+.||+....+++.|...+..+..+--++-| -..- ++
T Consensus 173 AktaL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~ 252 (280)
T COG5074 173 AKTALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIR 252 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhccee
Confidence 445566888888899999999999999999999999999999999999999999999998877766543 3322 34
Q ss_pred HHHHHHHHHHHHHHhc
Q 019985 290 TILLIIILFVVLFTVK 305 (332)
Q Consensus 290 ~~~iiii~~i~~~~~~ 305 (332)
|++|+++++|++++|.
T Consensus 253 c~gI~~iii~viv~vv 268 (280)
T COG5074 253 CYGICFIIIIVIVVVV 268 (280)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 4444444444444443
No 22
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.39 Score=43.42 Aligned_cols=77 Identities=19% Similarity=0.259 Sum_probs=54.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAITILLIIILF 298 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~i~~~iiii~~ 298 (332)
.|+.=.+-..|=-+|-.+|-.=++.|.+.|.+--.-+-.+.+++.++.+-|..-.+.-- ..||.|.+|+++.+++++
T Consensus 136 rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~-~nk~~~~aii~~l~~~il 212 (220)
T KOG1666|consen 136 RLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLI-RNKFTLTAIIALLVLAIL 212 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 34444555666667777777778899999999999999999999999888876654433 346776666555444333
No 23
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=2 Score=41.13 Aligned_cols=82 Identities=13% Similarity=0.206 Sum_probs=47.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh----hHHHHHHHHHHH
Q 019985 219 HDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTR----KWTCIAITILLI 294 (332)
Q Consensus 219 ~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~r----k~~c~~i~~~ii 294 (332)
..||+.=...|.+|-.-..+|+.|..+=..++..=...|+....+|+.|..++.+|...-++++ |-.+|.+|++++
T Consensus 198 l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~ 277 (297)
T KOG0810|consen 198 LAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIII 277 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehH
Confidence 3455555556666666666666666666666666666666666666666666666655555442 334555555444
Q ss_pred HHHHHH
Q 019985 295 IILFVV 300 (332)
Q Consensus 295 ii~~i~ 300 (332)
++++++
T Consensus 278 ~iii~~ 283 (297)
T KOG0810|consen 278 LIIIIV 283 (297)
T ss_pred HHHHHH
Confidence 444443
No 24
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.18 E-value=2.9 Score=39.45 Aligned_cols=88 Identities=15% Similarity=0.183 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 019985 211 TINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAIT 290 (332)
Q Consensus 211 ~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~i~ 290 (332)
..+.+++=+.+|..+..-..+|..|..+=+.+|..=.+.|++-..||+.+..++.+|..+=.++.+.. .-.+|++++
T Consensus 178 R~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~---~~ll~v~~~ 254 (269)
T KOG0811|consen 178 REQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKK---CILLLVGGP 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch---hhhhHHHHH
Confidence 34567777889999999999999999999999999999999999999999999999998876655333 455677766
Q ss_pred HHHHHHHHHHH
Q 019985 291 ILLIIILFVVL 301 (332)
Q Consensus 291 ~~iiii~~i~~ 301 (332)
+++|++++|+.
T Consensus 255 v~lii~l~i~~ 265 (269)
T KOG0811|consen 255 VGLIIGLIIAG 265 (269)
T ss_pred HHHHHHHHHHH
Confidence 66666666664
No 25
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.16 E-value=0.38 Score=45.44 Aligned_cols=57 Identities=30% Similarity=0.416 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 217 ERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQT 273 (332)
Q Consensus 217 ~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~k 273 (332)
+-+..+..|-.-+..|..|-.+|+..|+.|.+.||+|+++++.....|...+..+++
T Consensus 215 eiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 215 EIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 445578888899999999999999999999999999999999999999998887754
No 26
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=93.01 E-value=0.13 Score=39.43 Aligned_cols=10 Identities=30% Similarity=0.524 Sum_probs=4.0
Q ss_pred CCCCCCCCCC
Q 019985 309 NGGGNGGGGS 318 (332)
Q Consensus 309 ~~~~~~~~~~ 318 (332)
++-+||+.|+
T Consensus 45 qsSS~~~~s~ 54 (85)
T PF10717_consen 45 QSSSNGNSSS 54 (85)
T ss_pred hccCCCCCCC
Confidence 3344333444
No 27
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=91.41 E-value=5.7 Score=36.27 Aligned_cols=82 Identities=16% Similarity=0.327 Sum_probs=45.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLST-RKWTCIAITILLIIILFV 299 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~-rk~~c~~i~~~iiii~~i 299 (332)
++..+.+++.+-.--|+ ..+.+-.+.+-.-+--++............+++ |.++. .-|+.|.+||++|+.+|.
T Consensus 159 sll~LArslKtnalAfq---salkeDnQvl~~~~k~~D~N~~~L~~~Serve~---y~ksk~s~wf~~~miI~v~~sFVs 232 (244)
T KOG2678|consen 159 SLLKLARSLKTNALAFQ---SALKEDNQVLGAAEKGIDVNSQGLMDVSERVEK---YDKSKLSYWFYITMIIFVILSFVS 232 (244)
T ss_pred HHHHHHHHHHHhHHHHH---HHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHH---HHHhhhhHHHHHHHHHHHHHHHHH
Confidence 34444444444333333 335555666666666666666666655555544 44444 356666666666666666
Q ss_pred HHHHhcccc
Q 019985 300 VLFTVKPWD 308 (332)
Q Consensus 300 ~~~~~~~~~ 308 (332)
.++++++++
T Consensus 233 Miliiqifk 241 (244)
T KOG2678|consen 233 MILIIQIFK 241 (244)
T ss_pred HHHHHHHhh
Confidence 666666654
No 28
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=90.65 E-value=6.4 Score=30.30 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019985 209 LDTINEIQERHDAVKVLEKNLQELHQVFL 237 (332)
Q Consensus 209 ~~~l~~i~~R~~ei~~Ie~~i~eL~~lf~ 237 (332)
...+..+-+|.+.+..|+..-.+|.+--.
T Consensus 20 ~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~ 48 (89)
T PF00957_consen 20 RENIDKLLERGEKLEELEDKTEELSDNAK 48 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHhH
Confidence 34556666777777776665555544333
No 29
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=90.42 E-value=7.1 Score=30.44 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=19.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019985 243 VQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQL 279 (332)
Q Consensus 243 V~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk 279 (332)
+.+|.+.|....+.......-+..+..-+.+..+..+
T Consensus 31 L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~ 67 (92)
T PF03908_consen 31 LEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDK 67 (92)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555666666655444433
No 30
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=90.26 E-value=31 Score=37.59 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=35.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKY 277 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~ 277 (332)
-+..+.+.+..+..-+..++.-+-.+ +...+..-...+..++......+.+...|
T Consensus 358 ~v~~ik~~l~~~~~~i~~~a~~i~~~--~~~~~s~~~~~~~~~~~~~~~~~~~y~~y 412 (806)
T PF05478_consen 358 VVPPIKRDLDSIGKQIRSQAKQIPNQ--IDSNISDILNNTERSSRSFEDEYEKYDSY 412 (806)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 35566666666666777777766665 55566666667777776666666655544
No 31
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=89.45 E-value=0.71 Score=35.51 Aligned_cols=20 Identities=15% Similarity=0.308 Sum_probs=9.8
Q ss_pred HHhccccCCCCCCCCCCCCC
Q 019985 302 FTVKPWDNGGGNGGGGSSPQ 321 (332)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~ 321 (332)
|++--+..+|.+++.++.++
T Consensus 41 ImlfqsSS~~~~s~~~~~~~ 60 (85)
T PF10717_consen 41 IMLFQSSSNGNSSSSAPNPQ 60 (85)
T ss_pred HHHHhccCCCCCCCCCCCCc
Confidence 33334555555555455544
No 32
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.49 E-value=23 Score=33.71 Aligned_cols=245 Identities=12% Similarity=0.202 Sum_probs=137.3
Q ss_pred CCccccccCCCCCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---hHHHHHHHHHHHHHHHHHHHH
Q 019985 25 HTTIQMTENPNSTGG--VNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHN---AKAVKDLRSRMDADVSAALKN 99 (332)
Q Consensus 25 ~~~~e~~~~~~~~~~--~~~~~F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~~~---~~d~~~l~~kl~~l~~~i~~~ 99 (332)
.++....+..|.+|. ..-.+.-..+..++..|+.+-..-.+ |-.=..... ..+.+.+..+|..+.....+.
T Consensus 44 ~~~~~~~~~d~lpP~wvd~~~ev~~~l~rvrrk~~eLgk~~~K----hl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~ 119 (305)
T KOG0809|consen 44 EEGKTVSDEDGLPPAWVDVAEEVDYYLSRVRRKIDELGKAHAK----HLRPSFSDKREDEHEIEELTQEITQLLQKCQKL 119 (305)
T ss_pred hcCCccccccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 444555554443332 23344556677788888877555443 222222111 223444555666666666666
Q ss_pred HHHHHHHHHH---HHHhhHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhc
Q 019985 100 AKLIKIRLEA---LDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRI---SSEYRDTVQRRYYTV 173 (332)
Q Consensus 100 ~~~Ik~~Lk~---l~~~~~~~r~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~fq~~Q~~~---~~~~k~~~krr~~~i 173 (332)
.+.++..+.. .+.-... -..+.--.++..++.+|...=..|=+--..- ...|...+.. . +
T Consensus 120 iq~~~a~~n~~~~~e~~~~~-----------n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~-~--~ 185 (305)
T KOG0809|consen 120 IQRLSASLNQLSPSERLLRK-----------NAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDN-T--V 185 (305)
T ss_pred HHHHHhccCCCChHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccc-c--c
Confidence 6666655531 1111110 0122223456777777776666664432211 1234444431 1 1
Q ss_pred cCCCCChhHHHHHhhcCCchhHHHHHH-H-HhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHH
Q 019985 174 TGENPDEKTLDRLISTGESETFLQKAI-Q-EQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLD 251 (332)
Q Consensus 174 ~~~~~seeeie~~i~~g~~~~~~q~~l-~-~~~~~q~~~~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id 251 (332)
..| .++.+... .|.+..+ . .+....+.....+|..=.+.|..|..-..+|..|..|=++.|.-=.-.|+
T Consensus 186 ~~~--dd~d~~~~-------~~qe~ql~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvE 256 (305)
T KOG0809|consen 186 DLP--DDEDFSDR-------TFQEQQLMLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVE 256 (305)
T ss_pred cCc--chhhhhhh-------hHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchh
Confidence 122 22322221 1212222 1 12122344556678888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 019985 252 DIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAITILLIIILFVV 300 (332)
Q Consensus 252 ~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~i~~~iiii~~i~ 300 (332)
++-..++.|...+.+|.. ..+..++.+-.++++++|+++++++|+
T Consensus 257 qt~~~v~~a~keL~KAe~----yQk~~~k~~~i~~L~l~ii~llvllil 301 (305)
T KOG0809|consen 257 QTQVRVEDALKELHKAER----YQKRNKKMKVILMLTLLIIALLVLLIL 301 (305)
T ss_pred hhhhhHHhHHHHHHHHHH----HHhcCCceEehHHHHHHHHHHHHHHHh
Confidence 999999999999999865 456667776554444444444444443
No 33
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=86.01 E-value=14 Score=34.29 Aligned_cols=86 Identities=12% Similarity=0.180 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh-HHHHHH
Q 019985 212 INEIQERHDAVK-VLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRK-WTCIAI 289 (332)
Q Consensus 212 l~~i~~R~~ei~-~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk-~~c~~i 289 (332)
+..+-.+|+.++ +|-..|..|..-.++=+... +..|..=..-++.+...++.-...|..+...-+..++ .+.|+.
T Consensus 154 ~e~~l~~~~~~QE~L~~em~~La~~LK~~s~~~---~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~ 230 (251)
T PF09753_consen 154 LEKILQHHRNLQEDLTEEMLSLARQLKENSLAF---SQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWT 230 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 334444555554 56666666666555554443 3344444445777888888888888888777776654 444444
Q ss_pred HHHHHHHHHHHH
Q 019985 290 TILLIIILFVVL 301 (332)
Q Consensus 290 ~~~iiii~~i~~ 301 (332)
.+ +|++++++|
T Consensus 231 ~~-~i~~v~~~F 241 (251)
T PF09753_consen 231 WL-MIFVVIIVF 241 (251)
T ss_pred HH-HHHHHHHHH
Confidence 44 344344443
No 34
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=83.17 E-value=1.2 Score=38.82 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCC
Q 019985 285 TCIAITILLIIILFVVLFTVKPWDNG 310 (332)
Q Consensus 285 ~c~~i~~~iiii~~i~~~~~~~~~~~ 310 (332)
..|++++++++++++...+.-+|+.+
T Consensus 17 ~~~I~liv~ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 17 SLWILLIVLIVLLALAGAGYFFWFGS 42 (159)
T ss_pred eeehHHHHHHHHHHHHHHHHHHhhhc
Confidence 44444555555555555556666654
No 35
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=82.99 E-value=1.2 Score=37.06 Aligned_cols=19 Identities=26% Similarity=0.777 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 019985 283 KWTCIAITILLIIILFVVL 301 (332)
Q Consensus 283 k~~c~~i~~~iiii~~i~~ 301 (332)
||.+|+|||++||++++++
T Consensus 1 RW~l~~iii~~i~l~~~~~ 19 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLF 19 (130)
T ss_pred CeeeHHHHHHHHHHHHHHH
Confidence 4655555555444444444
No 36
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=81.60 E-value=58 Score=32.27 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019985 93 VSAALKNAKLIKIRLEALD 111 (332)
Q Consensus 93 ~~~i~~~~~~Ik~~Lk~l~ 111 (332)
+.++.+.......+|++++
T Consensus 100 iaqlqkkL~~y~~rLkeie 118 (455)
T KOG3850|consen 100 IAQLQKKLEQYHRRLKEIE 118 (455)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4445555556666676666
No 37
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=80.97 E-value=20 Score=26.56 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHH
Q 019985 246 QGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAI 289 (332)
Q Consensus 246 Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~i 289 (332)
..+-++.+|.+.......+......|.+- +.+.||++-++
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I----~~n~kW~~r~i 57 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKI----KSNTKWIWRTI 57 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 44555566666555555555555555443 34556765543
No 38
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=80.76 E-value=46 Score=30.56 Aligned_cols=42 Identities=7% Similarity=0.161 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 019985 254 ESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAITILLII 295 (332)
Q Consensus 254 e~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~i~~~iii 295 (332)
-.++..+.+..++...+++++.++.+++-+++|..|..++.|
T Consensus 119 ~~ei~k~r~e~~~ml~evK~~~E~y~k~~k~~~~gi~aml~V 160 (230)
T PF03904_consen 119 QNEIKKVREENKSMLQEVKQSHEKYQKRQKSMYKGIGAMLFV 160 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344555667777777788888887777888888877655444
No 39
>PTZ00264 circumsporozoite-related antigen; Provisional
Probab=80.17 E-value=13 Score=30.73 Aligned_cols=26 Identities=38% Similarity=0.990 Sum_probs=12.9
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCC
Q 019985 305 KPWDNGGGNGGGGSSPQNPTPQAQTPP 331 (332)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (332)
.||..+++ -||..+|+.++|..-.||
T Consensus 106 hpf~lg~~-k~gdaap~~~dp~~~gp~ 131 (148)
T PTZ00264 106 HPFSLGGG-KGGDAAPPEADPESNGPP 131 (148)
T ss_pred CCeecCCC-CCCCCCCCCCCCCCCCCC
Confidence 34555544 334555555555544443
No 40
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=80.12 E-value=28 Score=27.58 Aligned_cols=42 Identities=12% Similarity=0.098 Sum_probs=31.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 019985 220 DAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRAN 261 (332)
Q Consensus 220 ~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~ 261 (332)
..|..||..-..+..=+.++-.=++.|..+.+..+.+++.-.
T Consensus 11 ~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~ 52 (98)
T PF11166_consen 11 WRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEIN 52 (98)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHH
Confidence 357777777777777777777778888888888888887743
No 41
>PF14992 TMCO5: TMCO5 family
Probab=79.92 E-value=51 Score=31.30 Aligned_cols=55 Identities=16% Similarity=0.203 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 019985 211 TINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVR 265 (332)
Q Consensus 211 ~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~ 265 (332)
....+.....+|.+++.+...++++-.|=+.-+..=.+.|.+||...+...-+.+
T Consensus 121 l~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~e 175 (280)
T PF14992_consen 121 LLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEKE 175 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677888888888888888888877777777777888876655554443
No 42
>PHA02844 putative transmembrane protein; Provisional
Probab=79.51 E-value=3 Score=31.38 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH-HHhccccC
Q 019985 282 RKWTCIAITILLIIILFVVL-FTVKPWDN 309 (332)
Q Consensus 282 rk~~c~~i~~~iiii~~i~~-~~~~~~~~ 309 (332)
..|+.++|+++.++++++++ ..+|...+
T Consensus 46 ~~~~~~ii~i~~v~~~~~~~flYLK~~~r 74 (75)
T PHA02844 46 SSTKIWILTIIFVVFATFLTFLYLKAVPR 74 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 44544444433333333333 56666554
No 43
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.72 E-value=18 Score=32.55 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=28.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTAR 275 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 275 (332)
.+.++...|.|+..++.+=-..|-+-||-| |-=|+.++.-..++...-+.++
T Consensus 126 ~lskvkaqv~evk~vM~eNIekvldRGeki---ELLVdKTenl~~~s~~fr~q~r 177 (217)
T KOG0859|consen 126 KLAKVKAQVTEVKGVMMENIEKVLDRGEKI---ELLVDKTENLRSKSFDFRTQGR 177 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCeE---EeeechhhhhhhhhHHHHHHHH
Confidence 456666777888777766666666666632 3334444433333333333333
No 44
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=75.97 E-value=3.1 Score=43.64 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=5.8
Q ss_pred HHHHHhhchhhHH
Q 019985 273 TARKYQLSTRKWT 285 (332)
Q Consensus 273 kA~~~qk~~rk~~ 285 (332)
.+.+.+|-+|+++
T Consensus 14 ~~~~~~~~r~ri~ 26 (596)
T PLN02745 14 NAERQQKFRKRII 26 (596)
T ss_pred HHHHHHhhhheEE
Confidence 4444444444444
No 45
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=74.94 E-value=7.2 Score=31.42 Aligned_cols=10 Identities=20% Similarity=0.627 Sum_probs=4.4
Q ss_pred HHHHHhcccc
Q 019985 299 VVLFTVKPWD 308 (332)
Q Consensus 299 i~~~~~~~~~ 308 (332)
++++++.|-.
T Consensus 67 ~~ly~~RP~s 76 (103)
T PF11027_consen 67 MALYLLRPSS 76 (103)
T ss_pred HHHHHcCchh
Confidence 3335555443
No 46
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=74.66 E-value=1.3e+02 Score=32.90 Aligned_cols=15 Identities=13% Similarity=0.379 Sum_probs=6.9
Q ss_pred ChHHHHHHHHHHHHH
Q 019985 78 NAKAVKDLRSRMDAD 92 (332)
Q Consensus 78 ~~~d~~~l~~kl~~l 92 (332)
..+|..++..+++++
T Consensus 363 ~e~Dl~el~~rledi 377 (1102)
T KOG1924|consen 363 KEDDLEELSGRLEDI 377 (1102)
T ss_pred hhhhHHHHHhHHHhh
Confidence 334444444454443
No 47
>PHA02650 hypothetical protein; Provisional
Probab=74.31 E-value=4.2 Score=30.98 Aligned_cols=31 Identities=16% Similarity=0.167 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHHHHH-HHHhccccCCC
Q 019985 281 TRKWTCIAITILLIIILFVV-LFTVKPWDNGG 311 (332)
Q Consensus 281 ~rk~~c~~i~~~iiii~~i~-~~~~~~~~~~~ 311 (332)
+..|+.++++++.+++++++ +..+|...+.-
T Consensus 46 ~~~~~~~ii~i~~v~i~~l~~flYLK~~~r~~ 77 (81)
T PHA02650 46 WFNGQNFIFLIFSLIIVALFSFFVFKGYTRNL 77 (81)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 33444444333333333333 35677666553
No 48
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=74.07 E-value=4.6 Score=40.05 Aligned_cols=7 Identities=0% Similarity=-0.457 Sum_probs=3.2
Q ss_pred HHhcccc
Q 019985 302 FTVKPWD 308 (332)
Q Consensus 302 ~~~~~~~ 308 (332)
||+.+|.
T Consensus 30 i~gs~~~ 36 (387)
T PRK09510 30 IWSSFDE 36 (387)
T ss_pred HHHhccc
Confidence 4444553
No 49
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=73.82 E-value=30 Score=24.82 Aligned_cols=56 Identities=13% Similarity=0.159 Sum_probs=47.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARK 276 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 276 (332)
.|..-...+.+.-++-.+...-+..|++.|.++...+..+..++..++.-|..-.+
T Consensus 9 ~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~r 64 (66)
T PF12352_consen 9 SLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISR 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHc
Confidence 45556667777888888888899999999999999999999999999998876554
No 50
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=73.42 E-value=9.8 Score=30.66 Aligned_cols=18 Identities=6% Similarity=0.218 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019985 284 WTCIAITILLIIILFVVL 301 (332)
Q Consensus 284 ~~c~~i~~~iiii~~i~~ 301 (332)
...+.+++++++++..++
T Consensus 55 ~~~~~~~w~~~A~~ly~~ 72 (103)
T PF11027_consen 55 MFMMMMLWMVLAMALYLL 72 (103)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 444555556666666666
No 51
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=70.19 E-value=37 Score=34.14 Aligned_cols=17 Identities=24% Similarity=0.433 Sum_probs=6.8
Q ss_pred CCCCCCCCCCCCCCCCC
Q 019985 311 GGNGGGGSSPQNPTPQA 327 (332)
Q Consensus 311 ~~~~~~~~~~~~~~~~~ 327 (332)
+++||++|.||+++|++
T Consensus 230 ~s~~g~PPPPPP~PPp~ 246 (480)
T KOG2675|consen 230 ASAPGAPPPPPPAPPPA 246 (480)
T ss_pred ccCCCCCCCCCCCCCCc
Confidence 34444444433333333
No 52
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=69.14 E-value=53 Score=25.68 Aligned_cols=62 Identities=19% Similarity=0.186 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 019985 44 KFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNA 115 (332)
Q Consensus 44 ~F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~ 115 (332)
-||.-.+++...|..++.+......+... ..+ ...+..+..++......+...|..|++.+.
T Consensus 2 PF~~v~~ev~~sl~~l~~~~~~~~~~~~~---~~~-------~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ 63 (97)
T PF09177_consen 2 PFFVVKDEVQSSLDRLESLYRRWQRLRSD---TSS-------SEELKWLKRELRNALQSIEWDLEDLEEAVR 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTH---CC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc---CCC-------cHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888899999999987777665433221 111 234555566666666777777777776654
No 53
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=68.32 E-value=16 Score=31.32 Aligned_cols=15 Identities=20% Similarity=0.415 Sum_probs=6.5
Q ss_pred CCCCCCCCCCCCCCC
Q 019985 314 GGGGSSPQNPTPQAQ 328 (332)
Q Consensus 314 ~~~~~~~~~~~~~~~ 328 (332)
||..|-|-.+.|++.
T Consensus 80 ~~v~pqPgt~kPAgA 94 (189)
T PF05568_consen 80 AGVTPQPGTSKPAGA 94 (189)
T ss_pred ccCCCCCCCCCCCCC
Confidence 344444444444443
No 54
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.21 E-value=96 Score=28.27 Aligned_cols=51 Identities=8% Similarity=0.007 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019985 229 LQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQL 279 (332)
Q Consensus 229 i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk 279 (332)
|.++-..-..+-.=+.+|+-.|-.+-.-+-....-+.=.+.-|.--.+..+
T Consensus 138 lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~ 188 (213)
T KOG3251|consen 138 LDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVR 188 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 333333333333344566666666666666666666556665555554444
No 55
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.37 E-value=70 Score=26.35 Aligned_cols=25 Identities=16% Similarity=0.446 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHH
Q 019985 210 DTINEIQERHDAVKVLEKNLQELHQ 234 (332)
Q Consensus 210 ~~l~~i~~R~~ei~~Ie~~i~eL~~ 234 (332)
...+-+-||.+.+..|+..-..|..
T Consensus 47 ~NV~KVlER~ekL~~L~drad~L~~ 71 (116)
T KOG0860|consen 47 ENVEKVLERGEKLDELDDRADQLQA 71 (116)
T ss_pred HhHHHHHHhcchHHHHHHHHHHHHH
Confidence 4456677777777777666555543
No 56
>PRK04325 hypothetical protein; Provisional
Probab=67.29 E-value=49 Score=24.86 Aligned_cols=43 Identities=19% Similarity=0.195 Sum_probs=34.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 019985 222 VKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYV 264 (332)
Q Consensus 222 i~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v 264 (332)
|..||..+.-.-....+|+..|.+|...|+.....+..-...+
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888899999999999988876665544433
No 57
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=64.69 E-value=37 Score=24.35 Aligned_cols=45 Identities=18% Similarity=0.332 Sum_probs=37.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVR 265 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~ 265 (332)
+++.++..+..|-..|.....=-..+++.|+++|.+++....++-
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv 46 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMV 46 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 466788888888888999999999999999999999987765543
No 58
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=64.47 E-value=44 Score=24.64 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=36.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGT 268 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~ 268 (332)
.|..||..+.-.-....+|+..|..|...||+.+..+..-...+....
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577788888888888888888999999999999888877766665543
No 59
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=63.85 E-value=21 Score=25.80 Aligned_cols=12 Identities=17% Similarity=0.135 Sum_probs=6.0
Q ss_pred HHHHHHHHHhhc
Q 019985 269 ERLQTARKYQLS 280 (332)
Q Consensus 269 ~~L~kA~~~qk~ 280 (332)
+...+..+..++
T Consensus 26 ~~~~k~qk~~~~ 37 (59)
T PF09889_consen 26 EEYRKRQKRMRK 37 (59)
T ss_pred HHHHHHHHHHHH
Confidence 344455555553
No 60
>PF06589 CRA: Circumsporozoite-related antigen (CRA); InterPro: IPR009512 The mode of choroquine action or resistance of the malarial parasite Plasmodium falciparum is not fully elucidated and presents a huge challenge world wide. Plasmodial EXP-1 protein, also called circumsporozoite-related antigen, changes under chloroquine treatment, making it a potential chloroquine resistance marker []. Although there are no authentic repeats in this antigen, there are a number of internal homologies (N-A-N-P) and (N-A-D-P). The first of these tetramers is the dominant repeat found in the circumsporozoite protein (CSP) of P. falciparum and reacts with antibodies against circumsporozoite-related antigen (CRA). It is possible that immune responses to CRA may act against the CSP also. The CRA is found in many parasitic strains.
Probab=63.84 E-value=49 Score=27.89 Aligned_cols=19 Identities=21% Similarity=0.078 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhchhhHHHH
Q 019985 269 ERLQTARKYQLSTRKWTCI 287 (332)
Q Consensus 269 ~~L~kA~~~qk~~rk~~c~ 287 (332)
++|.+..+.+++.++.-..
T Consensus 61 eElv~~~K~kkkyk~~t~a 79 (157)
T PF06589_consen 61 EELVNVTKKKKKYKLATVA 79 (157)
T ss_pred HHHHHHHHhhhhHHHHHHH
Confidence 3444555555555554433
No 61
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=63.66 E-value=1.7e+02 Score=29.36 Aligned_cols=31 Identities=19% Similarity=0.417 Sum_probs=26.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 38 GGVNLDKFFDDVESVKDELKELERLHNSLQT 68 (332)
Q Consensus 38 ~~~~~~~F~~~v~~I~~~I~~I~~~i~~L~~ 68 (332)
....+..++.++.+|+.....|...++.|+.
T Consensus 210 ~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~ 240 (395)
T PF10267_consen 210 QNLGLQKILEELREIKESQSRLEESIEKLKE 240 (395)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999988876
No 62
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=63.07 E-value=39 Score=27.43 Aligned_cols=22 Identities=27% Similarity=0.079 Sum_probs=16.8
Q ss_pred CCccccchhhhhhcccCCCCCC
Q 019985 1 MNDLFSGSFSRFRSEQASPDRP 22 (332)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (332)
+|-|+|.||+.+.+--..|...
T Consensus 6 vn~l~t~Sps~~~~~~gdp~~~ 27 (123)
T KOG4797|consen 6 VNSLPTSSPSYGISLGGDPTSN 27 (123)
T ss_pred cccccccCCcccccccCCcccC
Confidence 6889999999998755555554
No 63
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=62.91 E-value=2.6e+02 Score=31.47 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Q 019985 212 INEIQERHDAVKVLEKNLQELHQVF 236 (332)
Q Consensus 212 l~~i~~R~~ei~~Ie~~i~eL~~lf 236 (332)
.+.+++-..++..+++.|.+++..+
T Consensus 364 ~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 364 ENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555
No 64
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.15 E-value=31 Score=31.10 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCC
Q 019985 284 WTCIAITILLIIILFVVLFTVKPWDNG 310 (332)
Q Consensus 284 ~~c~~i~~~iiii~~i~~~~~~~~~~~ 310 (332)
||-++.++++|+|-+.=++++++++..
T Consensus 177 ~~Sl~e~~~vv~iSi~Qv~ilk~fFt~ 203 (209)
T KOG1693|consen 177 WWSLLEIIAVVVISIAQVFILKFFFTD 203 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333333333333333677776654
No 65
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=62.09 E-value=5.6 Score=30.58 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 019985 266 GGTERLQTARKYQLSTRKWTCIAITILLI 294 (332)
Q Consensus 266 ~g~~~L~kA~~~qk~~rk~~c~~i~~~ii 294 (332)
...-+.+.|+++.+++|+|-.+.+++.++
T Consensus 48 ~~~Gd~~~A~~aS~~Ak~~~~ia~~~g~~ 76 (82)
T PF04505_consen 48 YAAGDYEGARRASRKAKKWSIIAIIIGIV 76 (82)
T ss_pred HHCCCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33446678888888888776555444433
No 66
>PF12669 P12: Virus attachment protein p12 family
Probab=61.37 E-value=4.7 Score=28.97 Aligned_cols=8 Identities=25% Similarity=0.327 Sum_probs=3.2
Q ss_pred HhccccCC
Q 019985 303 TVKPWDNG 310 (332)
Q Consensus 303 ~~~~~~~~ 310 (332)
++|-++.+
T Consensus 20 ~~k~~K~G 27 (58)
T PF12669_consen 20 FIKDKKKG 27 (58)
T ss_pred HHHHhhcC
Confidence 33333443
No 67
>PHA03054 IMV membrane protein; Provisional
Probab=60.00 E-value=14 Score=27.64 Aligned_cols=8 Identities=25% Similarity=0.650 Sum_probs=3.2
Q ss_pred hHHHHHHH
Q 019985 283 KWTCIAIT 290 (332)
Q Consensus 283 k~~c~~i~ 290 (332)
.|+.++++
T Consensus 47 ~~~~~ii~ 54 (72)
T PHA03054 47 GWYWLIII 54 (72)
T ss_pred hHHHHHHH
Confidence 34433333
No 68
>KOG3672 consensus Histidine acid phosphatase [General function prediction only]
Probab=58.55 E-value=18 Score=35.96 Aligned_cols=48 Identities=15% Similarity=0.118 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHhccccCCCCCCCCCCCCCCCCCCCCCC
Q 019985 283 KWTCIAITILLIIILFVVL-FTVKPWDNGGGNGGGGSSPQNPTPQAQTP 330 (332)
Q Consensus 283 k~~c~~i~~~iiii~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (332)
+.+|++.+++.|+++++.+ +.-......+++|+.++|-+-..|-..+.
T Consensus 12 Rfll~v~L~~wi~lvv~~~~~y~~~~~sTp~~G~~Sss~~~~~p~~~~e 60 (487)
T KOG3672|consen 12 RFLLRVRLIDWILLVVIFITIYTILHNSTPNEGIESSSVQLEKPIWKKE 60 (487)
T ss_pred hHHHHHHHHHHHHHHHHHHhheeeccccCCCCCCcCCCceeecCCCCCC
Confidence 3446766666666555555 44555566667666676665555544443
No 69
>PHA02975 hypothetical protein; Provisional
Probab=57.80 E-value=13 Score=27.56 Aligned_cols=11 Identities=9% Similarity=-0.055 Sum_probs=4.7
Q ss_pred chhhHHHHHHH
Q 019985 280 STRKWTCIAIT 290 (332)
Q Consensus 280 ~~rk~~c~~i~ 290 (332)
++..|+.++|+
T Consensus 40 ~~~~~~~~ii~ 50 (69)
T PHA02975 40 KSSLSIILIIF 50 (69)
T ss_pred CCchHHHHHHH
Confidence 44444444333
No 70
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.21 E-value=1.4e+02 Score=28.52 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=50.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAITILLIIILF 298 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~i~~~iiii~~ 298 (332)
.|.+|-.=..+|..|..+=..++.-=.+.+|.++-||+-|+..+-+--..+.+ ...-.-|...++|++++|++++
T Consensus 235 tIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSS---NRwLmvkiF~i~ivFflvfvlf 309 (311)
T KOG0812|consen 235 TISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSS---NRWLMVKIFGILIVFFLVFVLF 309 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHh
Confidence 35555555667777777777777777888889999999999888766665533 2233346555555555555554
No 71
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=57.08 E-value=17 Score=27.48 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019985 284 WTCIAITILLIIILFVVL 301 (332)
Q Consensus 284 ~~c~~i~~~iiii~~i~~ 301 (332)
|+++.+++.+++++++++
T Consensus 1 ~ii~~~~~g~~~ll~~v~ 18 (75)
T PF14575_consen 1 LIIASIIVGVLLLLVLVI 18 (75)
T ss_dssp -HHHHHHHHHHHHHHHHH
T ss_pred CEEehHHHHHHHHHHhhe
Confidence 345555554444444444
No 72
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.06 E-value=31 Score=31.40 Aligned_cols=25 Identities=12% Similarity=-0.032 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Q 019985 91 ADVSAALKNAKLIKIRLEALDRSNA 115 (332)
Q Consensus 91 ~l~~~i~~~~~~Ik~~Lk~l~~~~~ 115 (332)
.++.+|.+....+..-|..|+-+..
T Consensus 36 ~~l~~i~~~leEa~ell~qMdlEvr 60 (220)
T KOG1666|consen 36 QLLSEIDSKLEEANELLDQMDLEVR 60 (220)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3455666666677777788876653
No 73
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=56.29 E-value=35 Score=29.78 Aligned_cols=21 Identities=19% Similarity=0.067 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhhchhhHHHHH
Q 019985 268 TERLQTARKYQLSTRKWTCIA 288 (332)
Q Consensus 268 ~~~L~kA~~~qk~~rk~~c~~ 288 (332)
..++..|.+.++++.|++-++
T Consensus 137 ~~~~~~a~~~~~k~~Kmy~~L 157 (170)
T TIGR02833 137 ERQLTEAEDEQKKNEKMYRYL 157 (170)
T ss_pred HHHHHHHHHHHHhcccHHHHH
Confidence 345566777777766654333
No 74
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=56.28 E-value=35 Score=29.83 Aligned_cols=24 Identities=13% Similarity=0.064 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhchhhHH-HHHHHH
Q 019985 268 TERLQTARKYQLSTRKWT-CIAITI 291 (332)
Q Consensus 268 ~~~L~kA~~~qk~~rk~~-c~~i~~ 291 (332)
..++..|.+.++++.|++ |.++++
T Consensus 138 ~~~~~~a~~~~~k~~Kmy~~LGvl~ 162 (171)
T PRK08307 138 EREEEEAEEEQKKNEKMYKYLGFLA 162 (171)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 345566777777766654 444433
No 75
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=55.25 E-value=38 Score=29.44 Aligned_cols=20 Identities=20% Similarity=0.114 Sum_probs=10.3
Q ss_pred HHHHHHHHHhhchhhHHHHH
Q 019985 269 ERLQTARKYQLSTRKWTCIA 288 (332)
Q Consensus 269 ~~L~kA~~~qk~~rk~~c~~ 288 (332)
.++..|.+-.++..|++-++
T Consensus 138 ~~~~~a~~~~~~~~Klyr~L 157 (170)
T PF09548_consen 138 QQLEEAREEAKKKGKLYRSL 157 (170)
T ss_pred HHHHHHHHHHHhcccHHHHH
Confidence 34455655556555544333
No 76
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=54.84 E-value=92 Score=23.64 Aligned_cols=49 Identities=16% Similarity=0.265 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHH
Q 019985 50 ESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNA 100 (332)
Q Consensus 50 ~~I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~~~~ 100 (332)
-.|+.+|..+..++..|+.......... .+..++..+|+.....+..+.
T Consensus 7 l~Ir~dIk~vd~KVdaLq~~V~~l~~~~--~~v~~l~~klDa~~~~l~~l~ 55 (75)
T PF05531_consen 7 LVIRQDIKAVDDKVDALQTQVDDLESNL--PDVTELNKKLDAQSAQLTTLN 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777766554433322 244556677776655544433
No 77
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=54.81 E-value=19 Score=36.99 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 019985 253 IESQVQRANSYVRGGTERLQTARKYQLSTR 282 (332)
Q Consensus 253 Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~r 282 (332)
|..++.++...++++...|.++.++=.+..
T Consensus 436 IS~eL~~vn~sL~~A~~~L~~Sn~iL~~v~ 465 (490)
T PF00523_consen 436 ISSELGQVNNSLNNAKDLLDKSNQILDSVN 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444444455555555555544444443
No 78
>PHA03240 envelope glycoprotein M; Provisional
Probab=54.17 E-value=11 Score=34.26 Aligned_cols=6 Identities=50% Similarity=1.193 Sum_probs=2.4
Q ss_pred ccCCCC
Q 019985 307 WDNGGG 312 (332)
Q Consensus 307 ~~~~~~ 312 (332)
|+-.++
T Consensus 241 w~~~k~ 246 (258)
T PHA03240 241 WDLHGS 246 (258)
T ss_pred Hhhhcc
Confidence 444433
No 79
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=53.66 E-value=20 Score=23.26 Aligned_cols=19 Identities=26% Similarity=0.746 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 019985 282 RKWTCIAITILLIIILFVV 300 (332)
Q Consensus 282 rk~~c~~i~~~iiii~~i~ 300 (332)
|+|+.+.+..++|++++|.
T Consensus 14 r~Wi~F~l~mi~vFi~li~ 32 (38)
T PF09125_consen 14 RGWIAFALAMILVFIALIG 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 4677666555555544443
No 80
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=53.56 E-value=43 Score=24.23 Aligned_cols=15 Identities=27% Similarity=0.193 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHh
Q 019985 264 VRGGTERLQTARKYQ 278 (332)
Q Consensus 264 v~~g~~~L~kA~~~q 278 (332)
-|.|..-|..-=++|
T Consensus 8 nETA~~FL~RvGr~q 22 (60)
T PF06072_consen 8 NETATEFLRRVGRQQ 22 (60)
T ss_pred cccHHHHHHHHhHHH
Confidence 345566666665555
No 81
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.53 E-value=3.5e+02 Score=29.65 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 019985 88 RMDADVSAALKNAKLIKIRLEALDRSNA 115 (332)
Q Consensus 88 kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~ 115 (332)
.|+.....=....+.|+.++.+++++..
T Consensus 532 ~L~aa~~~ke~irq~ikdqldelskE~e 559 (1118)
T KOG1029|consen 532 ELEAARRKKELIRQAIKDQLDELSKETE 559 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443334455677888888877654
No 82
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=52.06 E-value=19 Score=27.90 Aligned_cols=7 Identities=14% Similarity=0.321 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 019985 269 ERLQTAR 275 (332)
Q Consensus 269 ~~L~kA~ 275 (332)
.+|.+-.
T Consensus 20 DQL~qlV 26 (84)
T PF06143_consen 20 DQLEQLV 26 (84)
T ss_pred HHHHHHH
Confidence 3444444
No 83
>PRK00295 hypothetical protein; Provisional
Probab=51.87 E-value=95 Score=22.90 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=34.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 019985 222 VKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVR 265 (332)
Q Consensus 222 i~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~ 265 (332)
|..||..+.-.-....+|+..|..|...||.....+..-...+.
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888888999999988888877665544443
No 84
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.75 E-value=29 Score=31.87 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCC
Q 019985 285 TCIAITILLIIILFVVLFTVKPWDNGGGNGGGGSSPQNPTPQAQ 328 (332)
Q Consensus 285 ~c~~i~~~iiii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (332)
.-++++++.|+.+|.++.+.+-.-+ ||.-++-||+-|.+-
T Consensus 252 ra~fli~lgvLafi~~i~lM~rlGr----~g~ds~Dpn~dP~~N 291 (299)
T KOG3970|consen 252 RALFLIFLGVLAFITIIMLMKRLGR----SGEDSSDPNFDPMAN 291 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc----cccccCCCCCCCCCC
Confidence 3444445555544444334333323 335666778888764
No 85
>PF10814 DUF2562: Protein of unknown function (DUF2562); InterPro: IPR024245 This protein of unknown function appears to be found predominantly in Mycobacterium spp.
Probab=51.63 E-value=1.4e+02 Score=24.89 Aligned_cols=30 Identities=23% Similarity=0.207 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhHH
Q 019985 256 QVQRANSYVRGGTERLQTARKYQLSTRKWT 285 (332)
Q Consensus 256 nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~ 285 (332)
-+..|.+-|..-=+-|.+|.+.+++.|+-|
T Consensus 63 elaAAqevV~~LP~alq~aR~~~rr~rRpl 92 (133)
T PF10814_consen 63 ELAAAQEVVANLPQALQGARRRRRRRRRPL 92 (133)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhccccccch
Confidence 344555555555566677777766655433
No 86
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=49.87 E-value=5.4 Score=32.20 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHH
Q 019985 281 TRKWTCIAITIL 292 (332)
Q Consensus 281 ~rk~~c~~i~~~ 292 (332)
+|.++|++.|++
T Consensus 25 rR~~k~~~~i~~ 36 (106)
T PF11837_consen 25 RRPLKCLAAIFS 36 (106)
T ss_dssp ------------
T ss_pred CCcchhHHHHHH
Confidence 343344444433
No 87
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=49.69 E-value=1.8e+02 Score=32.16 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHH
Q 019985 231 ELHQVFLDMAVLVQAQGEQLDDI 253 (332)
Q Consensus 231 eL~~lf~dla~lV~~Qge~id~I 253 (332)
+..+.+.+|+.++.+|..+.|.-
T Consensus 620 ~~~q~m~~L~e~lr~QQ~L~D~t 642 (851)
T TIGR02302 620 DMEQQMNKLGELMRKQQQLRDET 642 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44777888888888888888753
No 88
>PRK02793 phi X174 lysis protein; Provisional
Probab=48.86 E-value=1.1e+02 Score=22.80 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=33.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYV 264 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v 264 (332)
.|..||..+.-.-....+|+..|..|...||.....+..-...+
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777888888888888888888888888888876665554433
No 89
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=48.36 E-value=3.1e+02 Score=27.75 Aligned_cols=58 Identities=19% Similarity=0.371 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 87 SRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELR 155 (332)
Q Consensus 87 ~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~~~r~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~fq~~Q 155 (332)
.+|+...+.+-..+-.++.-++.|.++... | +..| ...++.++.+.+..+..+.+..+
T Consensus 213 ~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~-R---gVRp-------~~~qLe~v~kdi~~a~keL~~m~ 270 (426)
T smart00806 213 KKLSEDSDSLLTKVDDLQDIIEALRKDVAQ-R---GVRP-------SKKQLETVQKELETARKELKKME 270 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c---CCCC-------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 455565555666666667777777666543 1 2222 23356666777766666666653
No 90
>PRK00736 hypothetical protein; Provisional
Probab=48.28 E-value=1.1e+02 Score=22.57 Aligned_cols=44 Identities=9% Similarity=0.171 Sum_probs=33.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYV 264 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v 264 (332)
.|..||..+.-.-....+|+..|..|...||.+...+..-.+.+
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788888888888888888889999988888876665544433
No 91
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.15 E-value=29 Score=26.11 Aligned_cols=29 Identities=24% Similarity=0.194 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCCCCC
Q 019985 288 AITILLIIILFVVLFTVKPWDNGGGNGGG 316 (332)
Q Consensus 288 ~i~~~iiii~~i~~~~~~~~~~~~~~~~~ 316 (332)
+.++++||+..-+-++++-..+.||-||=
T Consensus 8 Fg~Fllvi~gMsiG~I~krk~I~GSCGGi 36 (77)
T COG2991 8 FGIFLLVIAGMSIGYIFKRKSIKGSCGGI 36 (77)
T ss_pred HHHHHHHHHHHhHhhheeccccccccccH
Confidence 33333333333333677777777776653
No 92
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=47.58 E-value=26 Score=33.75 Aligned_cols=30 Identities=37% Similarity=0.549 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhccccC-CCCCCCCC
Q 019985 288 AITILLIIILFVVLFTVKPWDN-GGGNGGGG 317 (332)
Q Consensus 288 ~i~~~iiii~~i~~~~~~~~~~-~~~~~~~~ 317 (332)
+|.+++=+||+.+|||..++.. -+++||+|
T Consensus 16 iiS~vLH~iLfalLIwgS~~~~~e~~~gG~g 46 (387)
T COG3064 16 IISAVLHIILFALLIWGSLDETIEASGGGGG 46 (387)
T ss_pred hHHHHHHHHHHHHHHHhhhhhcccccCCCCC
Confidence 3334444455555566555543 33434444
No 93
>PHA00350 putative assembly protein
Probab=47.57 E-value=23 Score=35.40 Aligned_cols=6 Identities=83% Similarity=0.933 Sum_probs=2.5
Q ss_pred CCCCCC
Q 019985 325 PQAQTP 330 (332)
Q Consensus 325 ~~~~~~ 330 (332)
+++++|
T Consensus 261 ~~~~~~ 266 (399)
T PHA00350 261 HQAQTP 266 (399)
T ss_pred cccccC
Confidence 334444
No 94
>PRK10884 SH3 domain-containing protein; Provisional
Probab=47.38 E-value=2.2e+02 Score=25.77 Aligned_cols=41 Identities=10% Similarity=0.169 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 233 HQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQT 273 (332)
Q Consensus 233 ~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~k 273 (332)
.+...+|..-+.+-...+..++..-......+..+..++..
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 117 NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555666666666666666666666544
No 95
>PRK13865 type IV secretion system protein VirB8; Provisional
Probab=47.36 E-value=68 Score=29.50 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Q 019985 284 WTCIAITILLIIILFVVLFTVKPWD 308 (332)
Q Consensus 284 ~~c~~i~~~iiii~~i~~~~~~~~~ 308 (332)
|++.++.+++.++.++.++.+.|.+
T Consensus 41 w~va~~~~~~~~~~~~Av~~l~PLK 65 (229)
T PRK13865 41 AAVAGIAVAGNVAQAFAIATMVPLE 65 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccC
Confidence 5444433444444444444444443
No 96
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=46.35 E-value=29 Score=31.85 Aligned_cols=24 Identities=8% Similarity=-0.151 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHH
Q 019985 268 TERLQTARKYQLSTRKWTCIAITI 291 (332)
Q Consensus 268 ~~~L~kA~~~qk~~rk~~c~~i~~ 291 (332)
..++..|.+.+++.-+|+.|+++.
T Consensus 10 ~~Qi~q~y~~trk~dp~l~~~ml~ 33 (224)
T PF13829_consen 10 RKQIWQAYKMTRKEDPKLPWLMLG 33 (224)
T ss_pred HHHHHHHHHHHHHHCcchHHHHHH
Confidence 468889999999887665444443
No 97
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=46.30 E-value=16 Score=37.54 Aligned_cols=22 Identities=9% Similarity=0.297 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019985 252 DIESQVQRANSYVRGGTERLQT 273 (332)
Q Consensus 252 ~Ie~nv~~a~~~v~~g~~~L~k 273 (332)
++...+++|+++++++++-|.+
T Consensus 442 ~vn~sL~~A~~~L~~Sn~iL~~ 463 (490)
T PF00523_consen 442 QVNNSLNNAKDLLDKSNQILDS 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555444443
No 98
>PRK02119 hypothetical protein; Provisional
Probab=46.30 E-value=1.2e+02 Score=22.63 Aligned_cols=43 Identities=12% Similarity=0.177 Sum_probs=33.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 019985 220 DAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANS 262 (332)
Q Consensus 220 ~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~ 262 (332)
..|..||..+.-.-....+|+..|..|...||.....+..-..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888888888888888899999888887766654443
No 99
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=46.12 E-value=1.2e+02 Score=22.44 Aligned_cols=28 Identities=11% Similarity=0.233 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 44 KFFDDVESVKDELKELERLHNSLQTSHE 71 (332)
Q Consensus 44 ~F~~~v~~I~~~I~~I~~~i~~L~~l~~ 71 (332)
..+.....+...|......++.|.....
T Consensus 38 ~~~~~~~~~~~ei~~~~~~l~~l~~~~~ 65 (105)
T PF00435_consen 38 EQLKKHKELQEEIESRQERLESLNEQAQ 65 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 100
>PLN03160 uncharacterized protein; Provisional
Probab=45.69 E-value=12 Score=34.11 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 019985 283 KWTCIAITILLIIILFVV 300 (332)
Q Consensus 283 k~~c~~i~~~iiii~~i~ 300 (332)
-|.|++.+++++++++++
T Consensus 39 c~~~~~a~~l~l~~v~~~ 56 (219)
T PLN03160 39 CCGCITATLLILATTILV 56 (219)
T ss_pred EHHHHHHHHHHHHHHHHh
Confidence 466665554444333333
No 101
>PHA03049 IMV membrane protein; Provisional
Probab=45.64 E-value=28 Score=25.70 Aligned_cols=14 Identities=7% Similarity=0.311 Sum_probs=5.3
Q ss_pred HHHHHHHHhccccC
Q 019985 296 ILFVVLFTVKPWDN 309 (332)
Q Consensus 296 i~~i~~~~~~~~~~ 309 (332)
++||++|+--.+.+
T Consensus 12 VaIi~lIvYgiYnk 25 (68)
T PHA03049 12 VVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHhc
Confidence 33333333333333
No 102
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.51 E-value=2.4e+02 Score=25.77 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=20.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQ 256 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~n 256 (332)
-+.++.....++..++..==..|-.-|+.++....-
T Consensus 135 n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~ 170 (216)
T KOG0862|consen 135 NLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSM 170 (216)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhh
Confidence 345555555555555555555555666666655543
No 103
>PF15106 TMEM156: TMEM156 protein family
Probab=45.31 E-value=19 Score=32.68 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=15.2
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHhcc
Q 019985 276 KYQLSTRKWTCIAITILLIIILFVVLFTVKP 306 (332)
Q Consensus 276 ~~qk~~rk~~c~~i~~~iiii~~i~~~~~~~ 306 (332)
++--.+.|+. |.+++++|+++.|++++-|.
T Consensus 168 kn~~CsmKIT-WYvLVllVfiflii~iI~KI 197 (226)
T PF15106_consen 168 KNSTCSMKIT-WYVLVLLVFIFLIILIIYKI 197 (226)
T ss_pred cCceeehhhH-HHHHHHHHHHHHHHHHHHHH
Confidence 4444455654 34445555555555555444
No 104
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=45.20 E-value=58 Score=25.29 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Q 019985 284 WTCIAITILLIIILFVVLFTVKPW 307 (332)
Q Consensus 284 ~~c~~i~~~iiii~~i~~~~~~~~ 307 (332)
.+-|++++..|+=+|+++.++.+.
T Consensus 21 llRYGLf~GAIFQliCilAiI~~~ 44 (85)
T PF06783_consen 21 LLRYGLFVGAIFQLICILAIILPI 44 (85)
T ss_pred HHHHHHHHHHHHHHHHHHheeeec
Confidence 456788888888888888544454
No 105
>PF12669 P12: Virus attachment protein p12 family
Probab=45.16 E-value=28 Score=24.92 Aligned_cols=12 Identities=8% Similarity=-0.205 Sum_probs=8.9
Q ss_pred HHhccccCCCCC
Q 019985 302 FTVKPWDNGGGN 313 (332)
Q Consensus 302 ~~~~~~~~~~~~ 313 (332)
++.++|+..-++
T Consensus 16 ~~r~~~k~~K~G 27 (58)
T PF12669_consen 16 AIRKFIKDKKKG 27 (58)
T ss_pred HHHHHHHHhhcC
Confidence 458888887775
No 106
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=44.93 E-value=97 Score=21.01 Aligned_cols=53 Identities=13% Similarity=0.255 Sum_probs=34.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 225 LEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKY 277 (332)
Q Consensus 225 Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~ 277 (332)
-.+.+..|.....++..|..+=+.+|..=..-++....++..+...+..|.+.
T Consensus 4 ~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~ 56 (60)
T cd00193 4 RDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKR 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666776666666666544
No 107
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=43.66 E-value=18 Score=32.81 Aligned_cols=18 Identities=22% Similarity=0.562 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019985 284 WTCIAITILLIIILFVVL 301 (332)
Q Consensus 284 ~~c~~i~~~iiii~~i~~ 301 (332)
++|++||.|+++|-.++|
T Consensus 131 LIClIIIAVLfLICT~Lf 148 (227)
T PF05399_consen 131 LICLIIIAVLFLICTLLF 148 (227)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555444333333
No 108
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=43.53 E-value=35 Score=33.95 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCC
Q 019985 283 KWTCIAITILLIIILFVVLFTVKPWDNGGGNGGGGSSPQN 322 (332)
Q Consensus 283 k~~c~~i~~~iiii~~i~~~~~~~~~~~~~~~~~~~~~~~ 322 (332)
-+++-+++=|+||+++|+.+......-+|+ ||+|++-++
T Consensus 14 aiiiSv~LHvlLi~lLi~gs~~~~~~~~~g-g~~g~~i~A 52 (387)
T PRK09510 14 AIIISVVLHIILFALLIWSSFDENIEASGG-GGGGSVIDA 52 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCCC-CCCcccccc
Confidence 344333333444444444433333564433 455555443
No 109
>PRK04406 hypothetical protein; Provisional
Probab=42.87 E-value=1.4e+02 Score=22.43 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=31.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANS 262 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~ 262 (332)
.|..||..+.-.-....+|+..|..|...||.....+..-..
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777888888888888888888777766554433
No 110
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.73 E-value=65 Score=30.54 Aligned_cols=46 Identities=20% Similarity=0.220 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 228 NLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQT 273 (332)
Q Consensus 228 ~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~k 273 (332)
.+.+-...-.--..++.+|++.|++||.+++........+.+.|..
T Consensus 87 ~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~ 132 (273)
T KOG3065|consen 87 LAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTE 132 (273)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHH
Confidence 4445556666677888999999999999999988887777776643
No 111
>PF10812 DUF2561: Protein of unknown function (DUF2561); InterPro: IPR024381 This family of proteins with unknown function appears to be found predominantly in Mycobacterium spp.
Probab=42.31 E-value=38 Score=30.48 Aligned_cols=27 Identities=11% Similarity=0.225 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHhcccc
Q 019985 282 RKWTCIAITILLIIILF-VVLFTVKPWD 308 (332)
Q Consensus 282 rk~~c~~i~~~iiii~~-i~~~~~~~~~ 308 (332)
..|..|.+|++-..+++ .+.+++....
T Consensus 62 T~WvLY~VI~VSaaVIagAVPlLLRARR 89 (207)
T PF10812_consen 62 TPWVLYAVIGVSAAVIAGAVPLLLRARR 89 (207)
T ss_pred CCEeehHHHHHHHHHHHHHHHHHHHHhh
Confidence 35665554444322222 2225555544
No 112
>PF06678 DUF1179: Protein of unknown function (DUF1179); InterPro: IPR009564 This family consists of several hypothetical Caenorhabditis elegans proteins of around 106 residues in length. The function of the family is unknown.
Probab=41.94 E-value=94 Score=24.96 Aligned_cols=8 Identities=63% Similarity=1.257 Sum_probs=4.6
Q ss_pred CCCCCCCC
Q 019985 325 PQAQTPPS 332 (332)
Q Consensus 325 ~~~~~~~~ 332 (332)
|.+|+||.
T Consensus 59 P~sQ~PP~ 66 (103)
T PF06678_consen 59 PTSQTPPA 66 (103)
T ss_pred ccccCCCC
Confidence 45666663
No 113
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=41.54 E-value=1.1e+02 Score=31.79 Aligned_cols=21 Identities=19% Similarity=0.108 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019985 44 KFFDDVESVKDELKELERLHN 64 (332)
Q Consensus 44 ~F~~~v~~I~~~I~~I~~~i~ 64 (332)
+|....=..+.+.-.|+..+.
T Consensus 196 ~F~~lsL~f~~D~~TLe~R~~ 216 (538)
T PF05781_consen 196 EFLRLSLGFKCDRFTLEKRLK 216 (538)
T ss_pred HHHHHHHHhhhhhhhHHHHHH
Confidence 366666666666666665554
No 114
>PHA02675 ORF104 fusion protein; Provisional
Probab=41.36 E-value=1.7e+02 Score=22.72 Aligned_cols=41 Identities=17% Similarity=0.316 Sum_probs=29.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 019985 225 LEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVR 265 (332)
Q Consensus 225 Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~ 265 (332)
|+..+..|-+.|..+..-...=++.|+|+|.+.+....++-
T Consensus 35 le~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml 75 (90)
T PHA02675 35 VEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREALL 75 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555577888888888889999999999877665443
No 115
>PHA02692 hypothetical protein; Provisional
Probab=40.57 E-value=39 Score=25.20 Aligned_cols=8 Identities=25% Similarity=0.775 Sum_probs=3.2
Q ss_pred hHHHHHHH
Q 019985 283 KWTCIAIT 290 (332)
Q Consensus 283 k~~c~~i~ 290 (332)
.|+.++++
T Consensus 44 ~~~~~ii~ 51 (70)
T PHA02692 44 PWTTVFLI 51 (70)
T ss_pred chHHHHHH
Confidence 34433333
No 116
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=40.48 E-value=2.9e+02 Score=25.16 Aligned_cols=60 Identities=18% Similarity=0.446 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHhh------chh---hHHHHHHHHHHHHHHHHHHHHhccccCC
Q 019985 251 DDIESQVQRANSYVRGGTERLQTAR--KYQL------STR---KWTCIAITILLIIILFVVLFTVKPWDNG 310 (332)
Q Consensus 251 d~Ie~nv~~a~~~v~~g~~~L~kA~--~~qk------~~r---k~~c~~i~~~iiii~~i~~~~~~~~~~~ 310 (332)
..-...+..|...++++...|.++. +|.. +-| -|--|+++.+=|++|+++.+++=||++.
T Consensus 109 ~~ak~~l~~aE~~~e~~~~~L~~~Il~RYHEEQiWSDKIRr~STwgT~~lmgvNvllFl~~~~~~EPwkRr 179 (207)
T PF05546_consen 109 EEAKEALEEAEEKVEEAFDDLMRAILTRYHEEQIWSDKIRRASTWGTWGLMGVNVLLFLVAQLLVEPWKRR 179 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 3444557777777777777777763 3322 223 4666676666677777777999999863
No 117
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=39.04 E-value=1.6e+02 Score=21.95 Aligned_cols=15 Identities=7% Similarity=0.058 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 019985 257 VQRANSYVRGGTERL 271 (332)
Q Consensus 257 v~~a~~~v~~g~~~L 271 (332)
++...+.|+..+.|+
T Consensus 21 Ld~iEeKvEf~~~Ei 35 (70)
T PF04210_consen 21 LDEIEEKVEFTNAEI 35 (70)
T ss_pred HHHHHHHHHhHHHHH
Confidence 334444455544444
No 118
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=38.93 E-value=2.3e+02 Score=31.11 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=22.4
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhHHHHH
Q 019985 227 KNLQELHQVFLDMAVLVQAQGEQLDDI 253 (332)
Q Consensus 227 ~~i~eL~~lf~dla~lV~~Qge~id~I 253 (332)
..-.+..+...+|+.|+.+|..+.|.-
T Consensus 581 ~~~~~~~q~m~~L~dl~r~Qq~L~D~t 607 (820)
T PF13779_consen 581 QQQQEMQQAMEELGDLLRRQQQLMDET 607 (820)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788899999999999999864
No 119
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=38.86 E-value=1e+02 Score=27.71 Aligned_cols=16 Identities=13% Similarity=0.223 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhHHHH
Q 019985 217 ERHDAVKVLEKNLQEL 232 (332)
Q Consensus 217 ~R~~ei~~Ie~~i~eL 232 (332)
+-++++..++..|.++
T Consensus 105 ~W~~~i~~~~~~i~~l 120 (204)
T PF00517_consen 105 QWEKEISNYTGNIYNL 120 (204)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHH
Confidence 3455555555554443
No 120
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=38.86 E-value=5.4e+02 Score=27.88 Aligned_cols=16 Identities=13% Similarity=0.422 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhHHHH
Q 019985 217 ERHDAVKVLEKNLQEL 232 (332)
Q Consensus 217 ~R~~ei~~Ie~~i~eL 232 (332)
+-.++|..+-+.|..+
T Consensus 696 ~~~~~I~~~v~~ik~i 711 (717)
T PF10168_consen 696 QQGEEIDELVKQIKNI 711 (717)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444333333
No 121
>PTZ00478 Sec superfamily; Provisional
Probab=38.62 E-value=1e+02 Score=23.72 Aligned_cols=60 Identities=8% Similarity=0.033 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 019985 251 DDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAITILLIIILFVVLFTVKPWDNGG 311 (332)
Q Consensus 251 d~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~i~~~iiii~~i~~~~~~~~~~~~ 311 (332)
|.+++-++...+-+..+..-++++.+--++=-...+....+.++++ .++.+++|..+++=
T Consensus 14 ~~~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiakat~iGf~im-G~IGy~IKLIhIPi 73 (81)
T PTZ00478 14 NPVGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSVGFFIM-GFIGYSIKLVFIPI 73 (81)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHHhhheeEeec
Confidence 3466677777888888888777665433332223333333333332 23336666666553
No 122
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.39 E-value=3.2e+02 Score=25.35 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=17.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 019985 242 LVQAQGEQLDDIESQVQRANSYVRGGTE 269 (332)
Q Consensus 242 lV~~Qge~id~Ie~nv~~a~~~v~~g~~ 269 (332)
|+...+.-+|+++.-+..+.-.+.+-+.
T Consensus 181 llDdl~~e~d~t~srl~~~~~~l~~v~~ 208 (235)
T KOG3202|consen 181 LLDDLDNEMDRTESRLDRVMKRLAKVNR 208 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566777777666666666655
No 123
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=38.33 E-value=1.2e+02 Score=27.34 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=40.7
Q ss_pred hhcCCchhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 019985 187 ISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSY 263 (332)
Q Consensus 187 i~~g~~~~~~q~~l~~~~~~q~~~~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~ 263 (332)
+..+.++.+++ .+.+.++..+..+|.+.+.=|++|..++..|..|.+--.+|..|+..=..|.+.|+.=+.....+
T Consensus 100 ~~e~Pse~YWk-~lAE~RR~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~l~~~~~~~ 175 (200)
T PF07412_consen 100 SSEGPSENYWK-ELAEERRKALEEALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIERLTGQELDN 175 (200)
T ss_dssp -SSSCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC------
T ss_pred hcCCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Confidence 33344456665 34444444445666666666677777777766666666666665555555555555544444433
No 124
>PRK06870 secG preprotein translocase subunit SecG; Reviewed
Probab=38.15 E-value=56 Score=24.53 Aligned_cols=18 Identities=17% Similarity=0.515 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhccccCCC
Q 019985 294 IIILFVVLFTVKPWDNGG 311 (332)
Q Consensus 294 iii~~i~~~~~~~~~~~~ 311 (332)
+.+++|+++...+-+.+|
T Consensus 12 ~~i~LI~~vLlQ~~k~~g 29 (76)
T PRK06870 12 VALLLIILVLLQSGKGAG 29 (76)
T ss_pred HHHHHHHHheeeCCCCCc
Confidence 333444446666666443
No 125
>PF11812 DUF3333: Domain of unknown function (DUF3333); InterPro: IPR024573 This N-terminal domain is functionally uncharacterised and it is found in proteins annotated as putative phosphate ABC transporter permease proteins. This presumed domain is typically between 116 to 159 amino acids in length.
Probab=37.88 E-value=51 Score=28.51 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=7.2
Q ss_pred HHhhchh-hHHHHHHHH
Q 019985 276 KYQLSTR-KWTCIAITI 291 (332)
Q Consensus 276 ~~qk~~r-k~~c~~i~~ 291 (332)
+|.+..| |++++.-++
T Consensus 8 R~~~e~rFr~~g~~Ai~ 24 (155)
T PF11812_consen 8 RYRAERRFRAYGLAAIA 24 (155)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 5555444 444444333
No 126
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=37.66 E-value=7e+02 Score=28.86 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 019985 49 VESVKDELK 57 (332)
Q Consensus 49 v~~I~~~I~ 57 (332)
+.+....|.
T Consensus 1417 A~~~~~~l~ 1425 (1758)
T KOG0994|consen 1417 AGDADTQLR 1425 (1758)
T ss_pred hhhHHHHHH
Confidence 333334333
No 127
>PHA02911 C-type lectin-like protein; Provisional
Probab=37.53 E-value=1.2e+02 Score=27.47 Aligned_cols=14 Identities=21% Similarity=0.164 Sum_probs=5.7
Q ss_pred HHHHHHHHH-HHhhc
Q 019985 267 GTERLQTAR-KYQLS 280 (332)
Q Consensus 267 g~~~L~kA~-~~qk~ 280 (332)
-.+-+..|. -|||.
T Consensus 13 ~~~~~~~~~~~~~~~ 27 (213)
T PHA02911 13 KMKFFADASSIYQKE 27 (213)
T ss_pred HHHHHHhhhhhhhhh
Confidence 333444443 34443
No 128
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=37.48 E-value=51 Score=28.64 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=7.5
Q ss_pred HHHHHhhchhhHH
Q 019985 273 TARKYQLSTRKWT 285 (332)
Q Consensus 273 kA~~~qk~~rk~~ 285 (332)
...++||..||++
T Consensus 20 as~~r~k~~~R~i 32 (161)
T PHA02673 20 ASVKRQKAIRRYI 32 (161)
T ss_pred hHHHHHHHHHHHH
Confidence 3455666666654
No 129
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=37.01 E-value=59 Score=24.70 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019985 249 QLDDIESQVQRANSYVRGG 267 (332)
Q Consensus 249 ~id~Ie~nv~~a~~~v~~g 267 (332)
.++.||.++..........
T Consensus 10 ~L~eiEr~L~~~DP~fa~~ 28 (82)
T PF11239_consen 10 RLEEIERQLRADDPRFAAR 28 (82)
T ss_pred HHHHHHHHHHhcCcHHHHH
Confidence 8888998886655544433
No 130
>PHA03030 hypothetical protein; Provisional
Probab=36.84 E-value=25 Score=28.20 Aligned_cols=24 Identities=17% Similarity=0.657 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccccC
Q 019985 286 CIAITILLIIILFVVLFTVKPWDN 309 (332)
Q Consensus 286 c~~i~~~iiii~~i~~~~~~~~~~ 309 (332)
|+++++.++++++++++.+...++
T Consensus 3 ci~~ili~lfifl~iffYI~~IkR 26 (122)
T PHA03030 3 CIFLILIFLFIFLFIFFYIRIIKR 26 (122)
T ss_pred eehHHHHHHHHHHHHHHHheeeec
Confidence 555555555556666555544443
No 131
>PHA03164 hypothetical protein; Provisional
Probab=36.76 E-value=33 Score=26.04 Aligned_cols=15 Identities=13% Similarity=-0.048 Sum_probs=6.0
Q ss_pred HhhchhhHHHHHHHH
Q 019985 277 YQLSTRKWTCIAITI 291 (332)
Q Consensus 277 ~qk~~rk~~c~~i~~ 291 (332)
.-++.||..-++++.
T Consensus 50 lwnnrRktftFlvLt 64 (88)
T PHA03164 50 LWNNRRKTFTFLVLT 64 (88)
T ss_pred HHHhhhheeehHHHH
Confidence 334444443333333
No 132
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=36.69 E-value=2.2e+02 Score=22.86 Aligned_cols=43 Identities=21% Similarity=0.304 Sum_probs=27.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 019985 220 DAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANS 262 (332)
Q Consensus 220 ~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~ 262 (332)
+.|..|...+.-..+-...+..-+..||+.|+.|..-+.....
T Consensus 53 eqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~ink 95 (102)
T PF01519_consen 53 EQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINK 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555566666666888888888876655443
No 133
>COG4640 Predicted membrane protein [Function unknown]
Probab=36.53 E-value=40 Score=33.50 Aligned_cols=12 Identities=17% Similarity=0.085 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 019985 284 WTCIAITILLII 295 (332)
Q Consensus 284 ~~c~~i~~~iii 295 (332)
++.|..+++++|
T Consensus 52 ii~was~a~~lI 63 (465)
T COG4640 52 IIPWASGAFILI 63 (465)
T ss_pred eehhHHHHHHHH
Confidence 344444443333
No 134
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=36.24 E-value=14 Score=38.60 Aligned_cols=28 Identities=11% Similarity=0.144 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 44 KFFDDVESVKDELKELERLHNSLQTSHE 71 (332)
Q Consensus 44 ~F~~~v~~I~~~I~~I~~~i~~L~~l~~ 71 (332)
.|.+-+..|...+......+.+++...+
T Consensus 256 sFN~Ai~~I~~g~~t~~~Al~KiQ~VVN 283 (610)
T PF01601_consen 256 SFNKAIGNIQLGFTTTASALNKIQDVVN 283 (610)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777788888888877777777765443
No 135
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=36.12 E-value=61 Score=25.84 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhhchh
Q 019985 266 GGTERLQTARKYQLSTR 282 (332)
Q Consensus 266 ~g~~~L~kA~~~qk~~r 282 (332)
.|...|.....|..+.+
T Consensus 32 ~G~~YL~~~y~y~~sh~ 48 (103)
T PF06422_consen 32 SGDDYLEESYGYSYSHR 48 (103)
T ss_pred eHHHHHhhhccccccch
Confidence 46667777777776554
No 136
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.10 E-value=39 Score=30.01 Aligned_cols=27 Identities=19% Similarity=0.505 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH-HHhcccc
Q 019985 282 RKWTCIAITILLIIILFVVL-FTVKPWD 308 (332)
Q Consensus 282 rk~~c~~i~~~iiii~~i~~-~~~~~~~ 308 (332)
-||.|++++.+.+++++.+. +++.|..
T Consensus 11 WKw~f~iLLAln~l~~~~i~~~vlsp~e 38 (197)
T COG4698 11 WKWLFFILLALNTLLAVLIALFVLSPRE 38 (197)
T ss_pred HHHHHHHHHHHHHHHHHHhheeeccCCC
Confidence 57888777776666554444 3444433
No 137
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=36.03 E-value=88 Score=24.26 Aligned_cols=12 Identities=8% Similarity=0.290 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 019985 284 WTCIAITILLII 295 (332)
Q Consensus 284 ~~c~~i~~~iii 295 (332)
.+++++.+|.++
T Consensus 14 lm~~GM~~VF~f 25 (85)
T PRK03814 14 LMLTGMGVVFIF 25 (85)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 138
>PHA02650 hypothetical protein; Provisional
Probab=35.46 E-value=37 Score=25.98 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=17.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHh
Q 019985 280 STRKWTCIAITILLIIILFVVLFTV 304 (332)
Q Consensus 280 ~~rk~~c~~i~~~iiii~~i~~~~~ 304 (332)
++++|.-|.++++++++++|+++..
T Consensus 42 ~~~~~~~~~~~ii~i~~v~i~~l~~ 66 (81)
T PHA02650 42 KSVSWFNGQNFIFLIFSLIIVALFS 66 (81)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHH
Confidence 5577888888887766665554443
No 139
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=35.36 E-value=54 Score=25.85 Aligned_cols=9 Identities=33% Similarity=0.634 Sum_probs=3.9
Q ss_pred CCCCCCCCC
Q 019985 309 NGGGNGGGG 317 (332)
Q Consensus 309 ~~~~~~~~~ 317 (332)
..|.-||+-
T Consensus 27 ~~ge~gGaD 35 (97)
T COG1930 27 TDGEFGGAD 35 (97)
T ss_pred ccccccCCc
Confidence 444444443
No 140
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=35.11 E-value=56 Score=27.90 Aligned_cols=19 Identities=5% Similarity=-0.127 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 019985 283 KWTCIAITILLIIILFVVL 301 (332)
Q Consensus 283 k~~c~~i~~~iiii~~i~~ 301 (332)
.+.++++|+++|+++++++
T Consensus 118 ~~~i~~~i~g~ll~i~~gi 136 (145)
T PF10661_consen 118 SPTILLSIGGILLAICGGI 136 (145)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3443333333444433333
No 141
>PHA02844 putative transmembrane protein; Provisional
Probab=34.82 E-value=40 Score=25.48 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=17.3
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHHHH
Q 019985 277 YQLSTRKWTCIAITILLIIILFVVLFT 303 (332)
Q Consensus 277 ~qk~~rk~~c~~i~~~iiii~~i~~~~ 303 (332)
+.++++++.-|.+++++++.++++++.
T Consensus 38 ~~~~~~~~~~~~~~ii~i~~v~~~~~~ 64 (75)
T PHA02844 38 VNKNNVCSSSTKIWILTIIFVVFATFL 64 (75)
T ss_pred ccccccCChhHHHHHHHHHHHHHHHHH
Confidence 455667888888887665555554343
No 142
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=34.73 E-value=2.1e+02 Score=22.00 Aligned_cols=10 Identities=30% Similarity=0.643 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 019985 291 ILLIIILFVV 300 (332)
Q Consensus 291 ~~iiii~~i~ 300 (332)
.+.+++++|+
T Consensus 76 ~~~~f~~~v~ 85 (92)
T PF03908_consen 76 AFLFFLLVVL 85 (92)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 143
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=34.50 E-value=1.8e+02 Score=28.76 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 019985 258 QRANSYVRGGTERLQTARKYQLSTRKWTCIAITILLIII 296 (332)
Q Consensus 258 ~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~i~~~iiii 296 (332)
+.-..|..++.+.|-....---.+|.|+|++|+=.+-++
T Consensus 75 ~kH~~YL~~~Lr~Lp~~~~~LDASR~Wm~YWil~sl~lL 113 (423)
T KOG0365|consen 75 QKHLMYLDKMLRQLPSQYTCLDASRPWMCYWILNSLALL 113 (423)
T ss_pred HHHHHHHHHHHHhCCCcccccccCcchhHHHHHHHHHHh
Confidence 344567777777776666666678999999987655443
No 144
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=34.01 E-value=3.8e+02 Score=24.72 Aligned_cols=35 Identities=14% Similarity=0.489 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 133 RTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQ 167 (332)
Q Consensus 133 r~~q~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~k 167 (332)
|.-....++..|.+...+|+..-......+-+.++
T Consensus 69 reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq 103 (230)
T PF03904_consen 69 REKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQ 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33356677788999889998765555555555544
No 145
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=33.99 E-value=1.2e+02 Score=24.17 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=4.4
Q ss_pred hHHHHHHHHH
Q 019985 283 KWTCIAITIL 292 (332)
Q Consensus 283 k~~c~~i~~~ 292 (332)
-|+.++++++
T Consensus 23 ~Wl~~i~~~~ 32 (97)
T PF04834_consen 23 YWLYAIGIVL 32 (97)
T ss_pred HHHHHHHHHH
Confidence 3554444433
No 146
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=33.74 E-value=47 Score=27.59 Aligned_cols=8 Identities=0% Similarity=-0.084 Sum_probs=1.9
Q ss_pred HhccccCC
Q 019985 303 TVKPWDNG 310 (332)
Q Consensus 303 ~~~~~~~~ 310 (332)
+-+..|+.
T Consensus 88 irR~~Kk~ 95 (122)
T PF01102_consen 88 IRRLRKKS 95 (122)
T ss_dssp HHHHS---
T ss_pred HHHHhccC
Confidence 33344443
No 147
>PF03408 Foamy_virus_ENV: Foamy virus envelope protein ; InterPro: IPR005070 Expression of the envelope (Env) glycoprotein is essential for viral particle egress. This feature is unique to the Spumavirinae, a subclass of the Retroviridae. ; GO: 0019031 viral envelope
Probab=33.65 E-value=54 Score=35.56 Aligned_cols=29 Identities=3% Similarity=0.115 Sum_probs=17.0
Q ss_pred HHHHHhhch--hhHHHHHHHHHHHHHHHHHH
Q 019985 273 TARKYQLST--RKWTCIAITILLIIILFVVL 301 (332)
Q Consensus 273 kA~~~qk~~--rk~~c~~i~~~iiii~~i~~ 301 (332)
+..-|--++ .|.|||++++++++++|++.
T Consensus 48 kY~~Y~~CATSTRim~Wilf~cvll~Iv~is 78 (981)
T PF03408_consen 48 KYLCYLCCATSTRIMAWILFVCVLLSIVLIS 78 (981)
T ss_pred HHHHHHHHcchhHHHHHHHHHHHHHHHHHHH
Confidence 444444443 47788887776666555444
No 148
>PHA02291 hypothetical protein
Probab=33.21 E-value=48 Score=26.87 Aligned_cols=33 Identities=3% Similarity=0.076 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH--HHhccccCCCCCCC
Q 019985 282 RKWTCIAITILLIIILFVVL--FTVKPWDNGGGNGG 315 (332)
Q Consensus 282 rk~~c~~i~~~iiii~~i~~--~~~~~~~~~~~~~~ 315 (332)
++|++++ ++++|+++.|.. +..-.++..|.|.|
T Consensus 4 K~~iFYi-L~~~VL~~si~sY~~sS~~Y~~~A~~~~ 38 (132)
T PHA02291 4 KASIFYI-LVVIVLAFSISSYYISSFMYHDKAKNEV 38 (132)
T ss_pred chhhHHH-HHHHHHHHHHHHHhhheeeeeccccccc
Confidence 3455444 344444444443 44445566666443
No 149
>PF10027 DUF2269: Predicted integral membrane protein (DUF2269); InterPro: IPR018729 Members of this family of bacterial hypothetical integral membrane proteins have no known function.
Probab=33.08 E-value=62 Score=27.28 Aligned_cols=32 Identities=28% Similarity=0.649 Sum_probs=22.7
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHHhcc
Q 019985 275 RKYQLSTRKWTCIAITILLIIILFVVLFTVKP 306 (332)
Q Consensus 275 ~~~qk~~rk~~c~~i~~~iiii~~i~~~~~~~ 306 (332)
.+|++..|+|..+..+..++.++++.+.++||
T Consensus 119 ~~y~~~~~~~~~~g~~~~~~~~~i~~LMV~KP 150 (150)
T PF10027_consen 119 PEYKRLFRRWFILGWIAFLLLVVIVVLMVFKP 150 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 46777777888777766666666666677776
No 150
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=32.94 E-value=92 Score=21.26 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=21.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhhHHH
Q 019985 224 VLEKNLQELHQVFLDMAVLVQAQGEQLD 251 (332)
Q Consensus 224 ~Ie~~i~eL~~lf~dla~lV~~Qge~id 251 (332)
.|-+.+.++++++.+|-.++.+|-.-+-
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q~kE~~ 32 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQIKETR 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999888888755443
No 151
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=32.85 E-value=2.6e+02 Score=24.23 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019985 214 EIQERHDAVKVLEKNLQELHQVFLDMAV 241 (332)
Q Consensus 214 ~i~~R~~ei~~Ie~~i~eL~~lf~dla~ 241 (332)
-++.|++.++.+-..++ .+..|+|+
T Consensus 56 ~lr~Rydrlr~va~rvQ---~vlgd~At 80 (156)
T PF08372_consen 56 SLRMRYDRLRSVAGRVQ---NVLGDVAT 80 (156)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 46778887777766544 33444443
No 152
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=32.67 E-value=21 Score=37.44 Aligned_cols=8 Identities=25% Similarity=0.198 Sum_probs=3.1
Q ss_pred hhhHHHHH
Q 019985 281 TRKWTCIA 288 (332)
Q Consensus 281 ~rk~~c~~ 288 (332)
.||.++.+
T Consensus 29 ~~~~~~~~ 36 (587)
T PLN02484 29 RRKTKLVL 36 (587)
T ss_pred cceEhHHH
Confidence 33444333
No 153
>COG1314 SecG Preprotein translocase subunit SecG [Intracellular trafficking and secretion]
Probab=32.19 E-value=61 Score=25.24 Aligned_cols=14 Identities=7% Similarity=0.230 Sum_probs=6.3
Q ss_pred HHHHHHHhccccCC
Q 019985 297 LFVVLFTVKPWDNG 310 (332)
Q Consensus 297 ~~i~~~~~~~~~~~ 310 (332)
++|+++++.+-+..
T Consensus 15 ~LI~~VLlQ~~kg~ 28 (86)
T COG1314 15 ALIILVLLQRGKGA 28 (86)
T ss_pred HHHHheeeecCCCC
Confidence 33333555555433
No 154
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=31.59 E-value=50 Score=31.98 Aligned_cols=16 Identities=13% Similarity=0.333 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhcccc
Q 019985 293 LIIILFVVLFTVKPWD 308 (332)
Q Consensus 293 iiii~~i~~~~~~~~~ 308 (332)
+|+++||++||.+++.
T Consensus 162 ii~l~vla~ivY~~~~ 177 (318)
T PF06682_consen 162 IIFLLVLAFIVYSLFL 177 (318)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444455556666655
No 155
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=31.48 E-value=2.4e+02 Score=21.67 Aligned_cols=10 Identities=20% Similarity=0.713 Sum_probs=4.9
Q ss_pred hhHHHHHHHH
Q 019985 282 RKWTCIAITI 291 (332)
Q Consensus 282 rk~~c~~i~~ 291 (332)
+.|.-+.+.+
T Consensus 72 ~P~~svgiAa 81 (94)
T PF05957_consen 72 NPWQSVGIAA 81 (94)
T ss_pred ChHHHHHHHH
Confidence 4565544433
No 156
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=31.38 E-value=2.1e+02 Score=28.63 Aligned_cols=54 Identities=15% Similarity=0.299 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 019985 211 TINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVR 265 (332)
Q Consensus 211 ~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~ 265 (332)
.+.++.++-++=..+...+.... +|..+...+...||---+++.-++.+.+.-+
T Consensus 299 ~~~~~~~~v~~G~sl~~al~~~~-~Fp~~~~~mi~~GEesG~L~~mL~~~A~~~~ 352 (397)
T COG1459 299 ALEEIIQEVREGGSLSQALEKTG-LFPPLLLQMIAVGEESGKLDEMLEKVADFYE 352 (397)
T ss_pred HHHHHHHHHHcchhHHHHHHhCC-CChHHHHHHHHHhhhcccHHHHHHHHHHHHH
Confidence 34445555555555555555544 8888888888899988888888877766554
No 157
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=30.70 E-value=60 Score=30.57 Aligned_cols=8 Identities=13% Similarity=-0.043 Sum_probs=3.5
Q ss_pred HhccccCC
Q 019985 303 TVKPWDNG 310 (332)
Q Consensus 303 ~~~~~~~~ 310 (332)
+++...++
T Consensus 35 Il~Vl~~~ 42 (264)
T PF04790_consen 35 ILKVLRFS 42 (264)
T ss_pred hheeeecc
Confidence 44444444
No 158
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=30.66 E-value=3 Score=32.09 Aligned_cols=8 Identities=25% Similarity=0.721 Sum_probs=0.0
Q ss_pred hchhhHHH
Q 019985 279 LSTRKWTC 286 (332)
Q Consensus 279 k~~rk~~c 286 (332)
++.|+|++
T Consensus 62 rkKrrwlw 69 (81)
T PF14812_consen 62 RKKRRWLW 69 (81)
T ss_dssp --------
T ss_pred cccchhHH
Confidence 33344443
No 159
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=30.64 E-value=5.6e+02 Score=25.64 Aligned_cols=19 Identities=11% Similarity=0.081 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019985 249 QLDDIESQVQRANSYVRGG 267 (332)
Q Consensus 249 ~id~Ie~nv~~a~~~v~~g 267 (332)
-.-.|.++++.-...+.+-
T Consensus 299 RaRdi~E~~Es~qtRiskl 317 (395)
T PF10267_consen 299 RARDIWEVMESCQTRISKL 317 (395)
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 3344444454444444443
No 160
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=30.27 E-value=17 Score=30.34 Aligned_cols=7 Identities=0% Similarity=0.088 Sum_probs=0.0
Q ss_pred hchhhHH
Q 019985 279 LSTRKWT 285 (332)
Q Consensus 279 k~~rk~~ 285 (332)
++++|++
T Consensus 3 ~~~~rl~ 9 (131)
T PF03100_consen 3 RRKKRLI 9 (131)
T ss_dssp -------
T ss_pred cceeehh
Confidence 3344444
No 161
>PRK00846 hypothetical protein; Provisional
Probab=30.26 E-value=2.5e+02 Score=21.40 Aligned_cols=45 Identities=9% Similarity=-0.005 Sum_probs=32.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVR 265 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~ 265 (332)
.|..||..+.-.-....+|+..|..|...||+....+..-.+.+.
T Consensus 14 Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 14 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777778888888888888888776665554443
No 162
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=29.68 E-value=5.2e+02 Score=25.28 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=20.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 019985 224 VLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVR 265 (332)
Q Consensus 224 ~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~ 265 (332)
.+...+......|.++..-+..-||.=-+++..+....++.+
T Consensus 112 sls~al~~~~~~fp~~~~~~i~~GE~sG~L~~~L~~~a~~~~ 153 (399)
T TIGR02120 112 SLADALAQHPRDFPPLYRALVAAGEASGALDAVLERLADYLE 153 (399)
T ss_pred cHHHHHHhCcccCCHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 344455544455555554444444444444544544444443
No 163
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=29.60 E-value=3.2e+02 Score=28.32 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 019985 43 DKFFDDVESVKDELKELERLH-------NSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNA 115 (332)
Q Consensus 43 ~~F~~~v~~I~~~I~~I~~~i-------~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~ 115 (332)
++|+...+.....|...++++ ..|.+.....+....+.+-..+...++...-+......+++..|+.++.+..
T Consensus 406 pe~~~~l~~lt~~~~~~ee~l~~Lt~~l~~l~~~~i~~~~~~l~~dk~~~~~~vnn~ki~l~~~ieki~~~l~~lqe~le 485 (543)
T COG1315 406 PEIVERLKELTEEISLHEERLKKLTKLLVALVKVKIESKKNILPPDKESLLTAVNNTKITLRNSIEKIKAELEGLQEELE 485 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555444444 4444321111111122233345566777666677788888888888887765
Q ss_pred h
Q 019985 116 A 116 (332)
Q Consensus 116 ~ 116 (332)
.
T Consensus 486 ~ 486 (543)
T COG1315 486 V 486 (543)
T ss_pred h
Confidence 4
No 164
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=29.48 E-value=2.2e+02 Score=20.61 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019985 256 QVQRANSYVRGGTERLQTARKY 277 (332)
Q Consensus 256 nv~~a~~~v~~g~~~L~kA~~~ 277 (332)
..+...+.+.....-++.|.+-
T Consensus 6 ~~e~~~~f~~d~~rvl~~~~KP 27 (61)
T PRK09400 6 LQENVKNFLEDYKRVLKVARKP 27 (61)
T ss_pred HHHhHHHHHHHHHHHHHHhcCC
Confidence 3455566666666666666543
No 165
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=29.38 E-value=2.4e+02 Score=20.86 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 253 IESQVQRANSYVRGGTERLQTARK 276 (332)
Q Consensus 253 Ie~nv~~a~~~v~~g~~~L~kA~~ 276 (332)
+++-.+...+++++...-|..|++
T Consensus 4 ~~~~~e~~~~~lke~~rvl~~arK 27 (65)
T COG2443 4 MMDKPEELREFLKEYRRVLKVARK 27 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455567777888888888877754
No 166
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=29.37 E-value=54 Score=32.51 Aligned_cols=6 Identities=33% Similarity=1.060 Sum_probs=2.3
Q ss_pred HHHHHH
Q 019985 285 TCIAIT 290 (332)
Q Consensus 285 ~c~~i~ 290 (332)
.|+++.
T Consensus 304 ~c~~~~ 309 (387)
T PF12751_consen 304 SCIYLS 309 (387)
T ss_pred HHHHHH
Confidence 344333
No 167
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=29.01 E-value=57 Score=24.73 Aligned_cols=11 Identities=0% Similarity=-0.082 Sum_probs=6.3
Q ss_pred HHhccccCCCC
Q 019985 302 FTVKPWDNGGG 312 (332)
Q Consensus 302 ~~~~~~~~~~~ 312 (332)
.+..+...+..
T Consensus 22 l~lHY~~k~~~ 32 (75)
T TIGR02976 22 LILHYRSKRKT 32 (75)
T ss_pred HHHHHHhhhcc
Confidence 56666655554
No 168
>PHA03395 p10 fibrous body protein; Provisional
Probab=28.77 E-value=2.8e+02 Score=21.63 Aligned_cols=56 Identities=14% Similarity=0.322 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 51 SVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDR 112 (332)
Q Consensus 51 ~I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~ 112 (332)
.|+..|..+..++..|+........ +.-+..++.++|+.....+. .+..++..+..
T Consensus 8 ~Ir~dIkavd~KVdalQ~~V~~l~~--nlpdv~~l~~kLdaq~~~Lt----ti~tkv~~I~d 63 (87)
T PHA03395 8 LIRQDIKAVSDKVDALQAAVDDVRA--NLPDVTEINEKLDAQSASLD----TISSAVDNITD 63 (87)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh--cCCcHHHHHHHHHhHHHHHH----HHHHHHHHHHH
Confidence 4666666677777666654443322 12245677777877766553 44444544443
No 169
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=28.75 E-value=67 Score=29.36 Aligned_cols=30 Identities=17% Similarity=0.012 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 019985 282 RKWTCIAITILLIIILFVVLFTVKPWDNGGG 312 (332)
Q Consensus 282 rk~~c~~i~~~iiii~~i~~~~~~~~~~~~~ 312 (332)
|+.+|++|+.+++.+..+++.+.. |+.+.-
T Consensus 208 ~Ra~~ffilal~~avta~~lt~gT-~s~a~~ 237 (275)
T KOG4684|consen 208 RRALLFFILALTVAVTAVILTMGT-ASVAPV 237 (275)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhh-hhhccc
Confidence 456666666665555555542222 555544
No 170
>PHA03054 IMV membrane protein; Provisional
Probab=28.47 E-value=58 Score=24.38 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=16.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q 019985 280 STRKWTCIAITILLIIILFVVL 301 (332)
Q Consensus 280 ~~rk~~c~~i~~~iiii~~i~~ 301 (332)
+++++.-|.+++++++++++++
T Consensus 41 ~~~~~~~~~~~ii~l~~v~~~~ 62 (72)
T PHA03054 41 NNTGCWGWYWLIIIFFIVLILL 62 (72)
T ss_pred cccCCchHHHHHHHHHHHHHHH
Confidence 4567889998888876655554
No 171
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=28.31 E-value=7.3e+02 Score=26.23 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHH
Q 019985 56 LKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSA 95 (332)
Q Consensus 56 I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~ 95 (332)
+..+...-.+|..+..+.....+.++...+.++++.+..+
T Consensus 397 ~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~ 436 (650)
T TIGR03185 397 LKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNE 436 (650)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555555555554444333
No 172
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=28.12 E-value=50 Score=30.89 Aligned_cols=6 Identities=0% Similarity=-0.081 Sum_probs=2.2
Q ss_pred HHHHHH
Q 019985 285 TCIAIT 290 (332)
Q Consensus 285 ~c~~i~ 290 (332)
++++++
T Consensus 199 i~f~ll 204 (256)
T PF09788_consen 199 IIFFLL 204 (256)
T ss_pred HHHHHH
Confidence 333333
No 173
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=28.06 E-value=5.2e+02 Score=25.12 Aligned_cols=13 Identities=31% Similarity=0.289 Sum_probs=8.9
Q ss_pred Cccccchhhhhhc
Q 019985 2 NDLFSGSFSRFRS 14 (332)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (332)
++...+||.++..
T Consensus 203 ~~~~~ks~e~~~~ 215 (320)
T TIGR01834 203 ADIGYKSFAALMS 215 (320)
T ss_pred HHHHHHHHHHHHH
Confidence 4556677877775
No 174
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=28.04 E-value=66 Score=31.15 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=8.3
Q ss_pred HHHHHHHHhccccCCCCC
Q 019985 296 ILFVVLFTVKPWDNGGGN 313 (332)
Q Consensus 296 i~~i~~~~~~~~~~~~~~ 313 (332)
+.|++++++-.|+.+++|
T Consensus 56 i~V~~l~~~f~~ryR~~~ 73 (315)
T PRK10525 56 IPAILMAVGFAWKYRASN 73 (315)
T ss_pred HHHHHHHheeEEEEecCC
Confidence 333333444455555553
No 175
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=27.99 E-value=71 Score=30.56 Aligned_cols=7 Identities=29% Similarity=0.325 Sum_probs=2.7
Q ss_pred HHhcccc
Q 019985 302 FTVKPWD 308 (332)
Q Consensus 302 ~~~~~~~ 308 (332)
+.+-|..
T Consensus 51 ~g~~~~~ 57 (292)
T PF04228_consen 51 FGGDPGG 57 (292)
T ss_pred hCcChHH
Confidence 3344433
No 176
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=27.87 E-value=6e+02 Score=25.05 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=13.8
Q ss_pred CCCChHHHHHHHHHHHHHH
Q 019985 38 GGVNLDKFFDDVESVKDEL 56 (332)
Q Consensus 38 ~~~~~~~F~~~v~~I~~~I 56 (332)
+.-...+|-.+|+.+--.|
T Consensus 189 s~vd~~eWklEvERV~PqL 207 (359)
T PF10498_consen 189 SKVDPAEWKLEVERVLPQL 207 (359)
T ss_pred ccCCHHHHHHHHHHHhhhh
Confidence 4456777888888877766
No 177
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=27.84 E-value=1.9e+02 Score=22.41 Aligned_cols=10 Identities=20% Similarity=0.574 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 019985 290 TILLIIILFV 299 (332)
Q Consensus 290 ~~~iiii~~i 299 (332)
++++++++++
T Consensus 24 ~fL~lLi~~~ 33 (85)
T PRK03814 24 IFLTLLVYLV 33 (85)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 178
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=27.29 E-value=1.1e+02 Score=22.55 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=11.3
Q ss_pred CCCCChhHHHHHhhc
Q 019985 175 GENPDEKTLDRLIST 189 (332)
Q Consensus 175 ~~~~seeeie~~i~~ 189 (332)
-|++++.++.+|++.
T Consensus 26 ~P~at~~~l~~lve~ 40 (68)
T PF09164_consen 26 LPDATPTELKELVEK 40 (68)
T ss_dssp -TTS-HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 488999999999864
No 179
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=27.13 E-value=65 Score=22.91 Aligned_cols=7 Identities=14% Similarity=-0.159 Sum_probs=2.9
Q ss_pred HHhcccc
Q 019985 302 FTVKPWD 308 (332)
Q Consensus 302 ~~~~~~~ 308 (332)
.++|..+
T Consensus 21 a~LK~sA 27 (55)
T PF11446_consen 21 AALKYSA 27 (55)
T ss_pred HHHHHhc
Confidence 3444433
No 180
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=26.92 E-value=7.8e+02 Score=26.06 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 019985 218 RHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIES 255 (332)
Q Consensus 218 R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~ 255 (332)
++...++.-+-+..||+.|.+|-..|.+=|...-.|.+
T Consensus 545 kDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEird 582 (594)
T PF05667_consen 545 KDEAARKAYKLLASLHENCSQLIETVEETGTISREIRD 582 (594)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 55567888889999999999999999988887665543
No 181
>PF02706 Wzz: Chain length determinant protein; InterPro: IPR003856 A number of related proteins are involved in the synthesis of lipopolysaccharide, O-antigen polysaccharide, capsule polysaccharide and exopolysaccharides. Chain length determinant protein (or wzz protein) is involved in lipopolysaccharide (lps) biosynthesis, conferring a modal distribution of chain length on the O-antigen component of lps []. It gives rise to a reduced number of short chain molecules and increases in numbers of longer molecules, with a modal value of 20. The MPA/MPA2 proteins function in CPS and EPS polymerisation and export [].; GO: 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane; PDB: 4E2H_C 3B8P_A 4E2C_B 4E29_A 3B8O_G 4E2L_I 3B8N_D 3B8M_C.
Probab=26.58 E-value=22 Score=29.36 Aligned_cols=6 Identities=50% Similarity=1.010 Sum_probs=0.0
Q ss_pred hHHHHH
Q 019985 283 KWTCIA 288 (332)
Q Consensus 283 k~~c~~ 288 (332)
+|++++
T Consensus 16 ~~~i~~ 21 (152)
T PF02706_consen 16 KWLIII 21 (152)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 333333
No 182
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=26.56 E-value=3e+02 Score=27.45 Aligned_cols=6 Identities=33% Similarity=0.921 Sum_probs=2.2
Q ss_pred HHHHHH
Q 019985 231 ELHQVF 236 (332)
Q Consensus 231 eL~~lf 236 (332)
+|.++|
T Consensus 129 ~Le~~~ 134 (406)
T PF04906_consen 129 RLEEIF 134 (406)
T ss_pred HHHHHh
Confidence 333333
No 183
>PRK01844 hypothetical protein; Provisional
Probab=26.12 E-value=75 Score=23.90 Aligned_cols=12 Identities=8% Similarity=0.196 Sum_probs=5.0
Q ss_pred HHHHHHHHHHhc
Q 019985 294 IIILFVVLFTVK 305 (332)
Q Consensus 294 iii~~i~~~~~~ 305 (332)
++.+++.+++.+
T Consensus 15 i~G~~~Gff~ar 26 (72)
T PRK01844 15 VAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 184
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.08 E-value=7.4e+02 Score=25.56 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 81 AVKDLRSRMDADVSAALKNAKLIKIRLEALDR 112 (332)
Q Consensus 81 d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~ 112 (332)
++++|+.+++.+..+++.- .+++.+|..|..
T Consensus 412 ~EE~Lr~Kldtll~~ln~P-nq~k~Rl~~L~e 442 (508)
T KOG3091|consen 412 DEEELRAKLDTLLAQLNAP-NQLKARLDELYE 442 (508)
T ss_pred cHHHHHHHHHHHHHHhcCh-HHHHHHHHHHHH
Confidence 5667777777777766655 566666666544
No 185
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=26.07 E-value=3.2e+02 Score=21.29 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 210 DTINEIQERHDAVK-VLEKNLQELHQVFLDMAVLVQAQ-GEQLDDIESQVQRANSYVRGGTERLQTAR 275 (332)
Q Consensus 210 ~~l~~i~~R~~ei~-~Ie~~i~eL~~lf~dla~lV~~Q-ge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 275 (332)
..+..+......+. +.+..-.++..-|..|-..+.+. ..+++.|+..-......+..-...+....
T Consensus 21 ~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l 88 (127)
T smart00502 21 DALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQ 88 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444544444432 34445566777888888877754 56888888776666555555555554433
No 186
>PRK10404 hypothetical protein; Provisional
Probab=26.06 E-value=3.4e+02 Score=21.62 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhchhhHHHHHHH
Q 019985 251 DDIESQVQRANSYVRG--------GTERLQTARKYQLSTRKWTCIAIT 290 (332)
Q Consensus 251 d~Ie~nv~~a~~~v~~--------g~~~L~kA~~~qk~~rk~~c~~i~ 290 (332)
++++..+..+.+.... +..-...+..|-+. ..|.-+.|.
T Consensus 41 ~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e-~Pw~avGia 87 (101)
T PRK10404 41 ARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHE-KPWQGIGVG 87 (101)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHH
Confidence 4555555555543332 33333444455443 456655543
No 187
>PRK13887 conjugal transfer protein TrbF; Provisional
Probab=25.99 E-value=1.8e+02 Score=26.90 Aligned_cols=6 Identities=17% Similarity=0.866 Sum_probs=2.7
Q ss_pred hhhHHH
Q 019985 281 TRKWTC 286 (332)
Q Consensus 281 ~rk~~c 286 (332)
++.|++
T Consensus 52 ~~~w~v 57 (250)
T PRK13887 52 RQTWQV 57 (250)
T ss_pred HHHHHH
Confidence 334554
No 188
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=25.83 E-value=46 Score=31.66 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 019985 82 VKDLRSRMDADVSAALKNAKLIKIRLEALDRSNA 115 (332)
Q Consensus 82 ~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~ 115 (332)
++++++=++.+-.+--+..++..+..+++++...
T Consensus 57 DpEmK~iid~~n~eaikkyqqT~~~f~e~~e~~~ 90 (295)
T TIGR01478 57 DPELKEIIDKLNEEAIKKYQETHDPYEQLQELVE 90 (295)
T ss_pred cHHHHHHHHHHhHHHhhhhhhhcchHHHHHHHHH
Confidence 3444444444444444445555555555554443
No 189
>TIGR00701 conserved hypothetical integral membrane protein. It appears this conserved hypothetical integral membrane protein is found only in gram negative bacteria. Completed genomes that include a member of this family include Rickettsia prowazekii, Synechocystis sp. PCC6803, and Helicobacter pylori. These proteins have 3 (Helicobacter pylori) to 5 (Synechocystis sp. PCC 6803) GES predicted transmembrane regions. Most members have 4 GES predicted transmembrane regions.
Probab=25.70 E-value=65 Score=27.33 Aligned_cols=25 Identities=24% Similarity=0.636 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Q 019985 284 WTCIAITILLIIILFVVLFTVKPWD 308 (332)
Q Consensus 284 ~~c~~i~~~iiii~~i~~~~~~~~~ 308 (332)
+.++--+..++++++++++++||+.
T Consensus 118 ~r~~ne~p~llli~iV~lvV~KPf~ 142 (142)
T TIGR00701 118 YRIVNEAPTILMVIIVILVVVKPFD 142 (142)
T ss_pred HHHHHHHHHHHHHHHHHheeeCCCC
Confidence 3333333444444555558999874
No 190
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=25.69 E-value=1.1e+03 Score=27.41 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 019985 92 DVSAALKNAKLIKIRLEALDRS 113 (332)
Q Consensus 92 l~~~i~~~~~~Ik~~Lk~l~~~ 113 (332)
.+..+......++..|..++.+
T Consensus 1585 ai~~a~~~~~~a~~~l~kv~~~ 1606 (1758)
T KOG0994|consen 1585 AIQGADRDIRLAQQLLAKVQEE 1606 (1758)
T ss_pred HHHhhHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555544
No 191
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=25.69 E-value=2.3e+02 Score=19.62 Aligned_cols=50 Identities=8% Similarity=0.265 Sum_probs=28.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 019985 220 DAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTE 269 (332)
Q Consensus 220 ~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~ 269 (332)
..|..|..-..+|+.+..+=+.+|..=...+|+...++..+...+.++..
T Consensus 11 ~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~ 60 (63)
T PF05739_consen 11 QSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALK 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555556666666666666666555543
No 192
>PHA03046 Hypothetical protein; Provisional
Probab=25.52 E-value=3.5e+02 Score=22.80 Aligned_cols=44 Identities=11% Similarity=0.146 Sum_probs=35.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYV 264 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v 264 (332)
+|+.+--.+.-|-.+|+....-...-+..|+|+|.+++....++
T Consensus 85 ~iKd~vlRL~vlEK~~~~~i~~c~~~~~~i~RLE~H~ETlRk~M 128 (142)
T PHA03046 85 DIKDFVLRLLVLEKLFQLSIKRCKSLNNIIKRLENHTETVRKNM 128 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777778888888888888888999999999987765443
No 193
>PRK00523 hypothetical protein; Provisional
Probab=25.42 E-value=79 Score=23.79 Aligned_cols=8 Identities=13% Similarity=0.102 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 019985 297 LFVVLFTV 304 (332)
Q Consensus 297 ~~i~~~~~ 304 (332)
+++.+++.
T Consensus 19 ~~~Gffia 26 (72)
T PRK00523 19 GIIGYFVS 26 (72)
T ss_pred HHHHHHHH
Confidence 33333443
No 194
>TIGR00810 secG protein translocase, SecG subunit. This family of proteins forms a complex with SecY and SecE. SecA then recruits the SecYEG complex to form an active protein translocation channel.
Probab=25.13 E-value=1.2e+02 Score=22.45 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=7.9
Q ss_pred HHHHHHHHhccccCCC
Q 019985 296 ILFVVLFTVKPWDNGG 311 (332)
Q Consensus 296 i~~i~~~~~~~~~~~~ 311 (332)
+++|++++..+-+.+|
T Consensus 13 i~LI~~vLlQ~~k~~g 28 (73)
T TIGR00810 13 ILLIGLVLLQSGKGGG 28 (73)
T ss_pred HHHHHHheeecCCCCc
Confidence 3344445666655543
No 195
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.10 E-value=2.1e+02 Score=21.13 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 251 DDIESQVQRANSYVRGGTERLQTARK 276 (332)
Q Consensus 251 d~Ie~nv~~a~~~v~~g~~~L~kA~~ 276 (332)
|+++.-++-..+++..+..-+++..+
T Consensus 2 ~~~~~~~~~~~~f~k~s~rf~krC~K 27 (67)
T KOG3498|consen 2 DQVDQLVEPLRDFAKDSIRFVKRCTK 27 (67)
T ss_pred chHHHhcchHHHHHHHHHHHHHHhcC
Confidence 45566666777777777777766653
No 196
>PTZ00370 STEVOR; Provisional
Probab=24.89 E-value=49 Score=31.51 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 019985 81 AVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAA 116 (332)
Q Consensus 81 d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~~ 116 (332)
.++++++=++.+-.+--+..++..+..+++++....
T Consensus 55 NDpemK~i~d~~n~eaikkyqqT~~~f~e~~e~~~k 90 (296)
T PTZ00370 55 NDPELKEIIDKMNEEAIKKYQQTHDPYEQLKEVVEK 90 (296)
T ss_pred CcHHHHHHHHHHhHHHhhhhhhhcchHHHHHHHHHh
Confidence 344455445554444445555566666666555443
No 197
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=24.64 E-value=3.2e+02 Score=20.78 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019985 248 EQLDDIESQVQRANSYVRGGTERLQTARKYQL 279 (332)
Q Consensus 248 e~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk 279 (332)
.-+|++|..++.+...+..+..+-.+|...--
T Consensus 39 Akv~qLe~dv~a~~~~~qAAk~eaarAn~rld 70 (78)
T COG4238 39 AKVDQLENDVNAMRSDVQAAKDEAARANQRLD 70 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 34577888888888888888887777665443
No 198
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=24.62 E-value=5.6e+02 Score=23.66 Aligned_cols=72 Identities=14% Similarity=0.092 Sum_probs=37.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh-hHHHHHHHHHHHHHHH
Q 019985 224 VLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTR-KWTCIAITILLIIILF 298 (332)
Q Consensus 224 ~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~r-k~~c~~i~~~iiii~~ 298 (332)
+|-.++..|..-|+..+.-. +..|+.=-.-+..+.--+.....-|..+...-.+.. ++..+++.+.+||+++
T Consensus 155 eLaesll~LArslKtnalAf---qsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~ 227 (244)
T KOG2678|consen 155 ELAESLLKLARSLKTNALAF---QSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVI 227 (244)
T ss_pred HHHHHHHHHHHHHHHhHHHH---HHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45566666666666554333 334443333455555666666666666666655554 4534444443333333
No 199
>PHA02414 hypothetical protein
Probab=24.51 E-value=3.7e+02 Score=21.49 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=30.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYV 264 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v 264 (332)
+-..|+..+.||+.|..-|..=+.-|.|---.|-|.++.-.+.+
T Consensus 30 dn~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i 73 (111)
T PHA02414 30 DNKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKI 73 (111)
T ss_pred chHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHH
Confidence 44567788888888888777777777776666666665544443
No 200
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=24.42 E-value=6.7e+02 Score=24.49 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=15.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 019985 225 LEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRAN 261 (332)
Q Consensus 225 Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~ 261 (332)
+...+.....+|.++..-...-||.=-+++.-+....
T Consensus 111 ls~al~~~~~~fp~~~~~li~~GE~sG~L~~~l~~la 147 (399)
T PRK10573 111 FSEALLQWPQVFPPLYQALIATGELTGKLDECCFQLA 147 (399)
T ss_pred HHHHHHhCcCcCCHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 4455555444554443333334443334444333333
No 201
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=24.33 E-value=1.2e+02 Score=26.25 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=15.4
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHH
Q 019985 278 QLSTRKWTCIAITILLIIILFVVLF 302 (332)
Q Consensus 278 qk~~rk~~c~~i~~~iiii~~i~~~ 302 (332)
.|+.-.|+.+++++++.++.+.+.+
T Consensus 13 ~~k~~~~I~liv~ivl~~~a~~~~~ 37 (159)
T COG1580 13 KKKKSLWILLIVLIVLLALAGAGYF 37 (159)
T ss_pred CCCceeehHHHHHHHHHHHHHHHHH
Confidence 3444577777777766666665553
No 202
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=24.25 E-value=5.6e+02 Score=23.47 Aligned_cols=20 Identities=25% Similarity=0.584 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhHHHHH
Q 019985 214 EIQERHDAVKVLEKNLQELH 233 (332)
Q Consensus 214 ~i~~R~~ei~~Ie~~i~eL~ 233 (332)
.++.|+++|++|++++.+--
T Consensus 82 ~VEkrD~~IQqLqk~LK~aE 101 (272)
T KOG4552|consen 82 HVEKRDEVIQQLQKNLKSAE 101 (272)
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 45566666666666555443
No 203
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=23.96 E-value=2.8e+02 Score=23.99 Aligned_cols=17 Identities=6% Similarity=-0.232 Sum_probs=7.5
Q ss_pred HHHHHhhchhhHHHHHH
Q 019985 273 TARKYQLSTRKWTCIAI 289 (332)
Q Consensus 273 kA~~~qk~~rk~~c~~i 289 (332)
.-.+.+.|-.+++.++.
T Consensus 145 ~~~~~~~Klyr~LGvl~ 161 (170)
T PF09548_consen 145 EEAKKKGKLYRSLGVLG 161 (170)
T ss_pred HHHHhcccHHHHHHHHH
Confidence 33344444444444443
No 204
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=23.90 E-value=1.6e+02 Score=33.65 Aligned_cols=7 Identities=0% Similarity=0.097 Sum_probs=2.9
Q ss_pred HHhcccc
Q 019985 302 FTVKPWD 308 (332)
Q Consensus 302 ~~~~~~~ 308 (332)
+++.++.
T Consensus 1112 VLLS~~G 1118 (1145)
T TIGR00918 1112 VLLSMFG 1118 (1145)
T ss_pred HHHHhcC
Confidence 4444443
No 205
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=23.84 E-value=71 Score=28.52 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Q 019985 284 WTCIAITILLIIILFVVLFTVKPWD 308 (332)
Q Consensus 284 ~~c~~i~~~iiii~~i~~~~~~~~~ 308 (332)
+-+|+-|+|.+-++.|++|+.||+|
T Consensus 161 ~SFiGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 161 ASFIGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 3445544554555666668888886
No 206
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=23.84 E-value=2.3e+02 Score=26.40 Aligned_cols=12 Identities=8% Similarity=0.218 Sum_probs=4.8
Q ss_pred HHHHHHHHhccc
Q 019985 296 ILFVVLFTVKPW 307 (332)
Q Consensus 296 i~~i~~~~~~~~ 307 (332)
+++++++++.|.
T Consensus 56 ~~~~~Ia~llPL 67 (239)
T COG3736 56 AAVIAIAILLPL 67 (239)
T ss_pred HHHHHHHhhccc
Confidence 333333444443
No 207
>PRK11901 hypothetical protein; Reviewed
Probab=23.66 E-value=1.3e+02 Score=29.21 Aligned_cols=21 Identities=29% Similarity=0.667 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 019985 281 TRKWTCIAITILLIIILFVVL 301 (332)
Q Consensus 281 ~rk~~c~~i~~~iiii~~i~~ 301 (332)
+|.-|+|+|-|+++++|||.|
T Consensus 34 SRQh~MiGiGilVLlLLIi~I 54 (327)
T PRK11901 34 SRQHMMIGIGILVLLLLIIAI 54 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355566666555555555554
No 208
>PRK14710 hypothetical protein; Provisional
Probab=23.63 E-value=1e+02 Score=23.16 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 019985 283 KWTCIAITILLIIILFVVL 301 (332)
Q Consensus 283 k~~c~~i~~~iiii~~i~~ 301 (332)
.+++++|+.++|+++++++
T Consensus 9 skm~ififaiii~v~lcv~ 27 (86)
T PRK14710 9 SKMIIFIFAIIIIVVLCVI 27 (86)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 3444555554444444443
No 209
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=23.52 E-value=4.2e+02 Score=22.25 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=18.0
Q ss_pred hhcCChHHHHHHHHHHHHHHHHHHHHH
Q 019985 74 KTLHNAKAVKDLRSRMDADVSAALKNA 100 (332)
Q Consensus 74 ~~~~~~~d~~~l~~kl~~l~~~i~~~~ 100 (332)
+..++..|..+|+.+|+.+...+.++.
T Consensus 103 LgvPs~~dv~~L~~rId~L~~~v~~l~ 129 (132)
T PF05597_consen 103 LGVPSRKDVEALSARIDQLTAQVERLA 129 (132)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677777777777777766655443
No 210
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.48 E-value=87 Score=26.32 Aligned_cols=25 Identities=8% Similarity=-0.028 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCC
Q 019985 288 AITILLIIILFVVLFTVKPWDNGGG 312 (332)
Q Consensus 288 ~i~~~iiii~~i~~~~~~~~~~~~~ 312 (332)
..+|.+|+.++|..+++.+.++...
T Consensus 10 ~a~igLvvGi~IG~li~Rlt~~~~k 34 (138)
T COG3105 10 YALIGLVVGIIIGALIARLTNRKLK 34 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhhh
Confidence 3344455555666677777665543
No 211
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=23.43 E-value=3.5e+02 Score=20.92 Aligned_cols=20 Identities=5% Similarity=0.003 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 019985 95 AALKNAKLIKIRLEALDRSN 114 (332)
Q Consensus 95 ~i~~~~~~Ik~~Lk~l~~~~ 114 (332)
++......++..|+.++..+
T Consensus 36 e~~~~~~eL~~~l~~ie~~L 55 (97)
T PF09177_consen 36 ELKWLKRELRNALQSIEWDL 55 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555544443
No 212
>PF06388 DUF1075: Protein of unknown function (DUF1075); InterPro: IPR009432 This family consists of several eukaryotic proteins of unknown function.
Probab=23.07 E-value=1e+02 Score=26.40 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcccc
Q 019985 281 TRKWTCIAITILLIIILFVVLFTVKPWD 308 (332)
Q Consensus 281 ~rk~~c~~i~~~iiii~~i~~~~~~~~~ 308 (332)
.|=+.|++++++.||.-+++++..|--.
T Consensus 91 ~RIkv~~~Mi~lTiiGc~~mv~sGK~aa 118 (146)
T PF06388_consen 91 ARIKVCYIMIALTIIGCIAMVISGKRAA 118 (146)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 3456777777776666665555555433
No 213
>PF11636 Troponin-I_N: Troponin I residues 1-32; InterPro: IPR021666 This family of proteins represents the cardiac N-extension of troponin I. This region of the protein (1-32) interacts with the N-lobe of cTnC and modulates myofilament calcium(2) sensitivity []. ; PDB: 2JPW_A.
Probab=22.96 E-value=29 Score=22.14 Aligned_cols=15 Identities=40% Similarity=1.001 Sum_probs=0.5
Q ss_pred CCCCCCCCCCCCCCC
Q 019985 317 GSSPQNPTPQAQTPP 331 (332)
Q Consensus 317 ~~~~~~~~~~~~~~~ 331 (332)
++.+|+|.|++.+||
T Consensus 8 ~~~~p~P~P~~~pp~ 22 (36)
T PF11636_consen 8 GPEPPAPPPATAPPP 22 (36)
T ss_dssp S--------------
T ss_pred CCCCCCCCCcchhhh
Confidence 456666666555554
No 214
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=22.68 E-value=7e+02 Score=24.08 Aligned_cols=29 Identities=10% Similarity=0.092 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 019985 87 SRMDADVSAALKNAKLIKIRLEALDRSNA 115 (332)
Q Consensus 87 ~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~ 115 (332)
++|+.+-..|......+...|+.|.+++.
T Consensus 230 ~QM~s~~~nIe~~~~~~~~~Ldklh~eit 258 (384)
T KOG0972|consen 230 EQMNSMHKNIEQKVGNVGPYLDKLHKEIT 258 (384)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 56777777777777777777777776654
No 215
>PF03653 UPF0093: Uncharacterised protein family (UPF0093); InterPro: IPR005265 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments). There is some indirect indication of a link between this protein and the function or assembly of cytochromes: in Escherichia coli, strains overproducing this protein turn pink, perhaps because of an excess of accumulated haems [].
Probab=22.60 E-value=89 Score=26.54 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Q 019985 284 WTCIAITILLIIILFVVLFTVKPW 307 (332)
Q Consensus 284 ~~c~~i~~~iiii~~i~~~~~~~~ 307 (332)
+.++--+..++++++++++++||+
T Consensus 124 ~r~~nei~~ll~i~Iv~lvv~KPF 147 (147)
T PF03653_consen 124 FRIFNEIPTLLLIAIVILVVVKPF 147 (147)
T ss_pred HHHHhHHHHHHHHHHHHHheeCCC
Confidence 333333334444445555888885
No 216
>PRK11638 lipopolysaccharide biosynthesis protein WzzE; Provisional
Probab=22.37 E-value=85 Score=30.66 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccc
Q 019985 282 RKWTCIAITILLIIILFVVLFTVKPWD 308 (332)
Q Consensus 282 rk~~c~~i~~~iiii~~i~~~~~~~~~ 308 (332)
+||+++++.++.+++.++..++++|+-
T Consensus 22 ~k~~Ii~~t~~~~~~~~~~s~~~~~~y 48 (342)
T PRK11638 22 GKLWIIGMALLFALIALGYSFLARQEW 48 (342)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCcee
Confidence 455544444443333333335555443
No 217
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.27 E-value=6.2e+02 Score=23.31 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 237 LDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTAR 275 (332)
Q Consensus 237 ~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 275 (332)
..--.-.+.|+.++-.|-.-|.++....-.-+.=|.+..
T Consensus 166 ~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk 204 (231)
T KOG3208|consen 166 QATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIK 204 (231)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHH
Confidence 333344567999999999999888888776666555443
No 218
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=22.25 E-value=2.7e+02 Score=24.02 Aligned_cols=13 Identities=8% Similarity=0.069 Sum_probs=5.6
Q ss_pred hhhhHHHHHHHHH
Q 019985 245 AQGEQLDDIESQV 257 (332)
Q Consensus 245 ~Qge~id~Ie~nv 257 (332)
+|..-+-+.+-+.
T Consensus 69 QQe~kvska~wdt 81 (154)
T PF14914_consen 69 QQEVKVSKAQWDT 81 (154)
T ss_pred HHHHHHhHHhhhh
Confidence 3444444444443
No 219
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=22.22 E-value=1.1e+02 Score=23.11 Aligned_cols=11 Identities=0% Similarity=-0.127 Sum_probs=5.3
Q ss_pred HHhccccCCCC
Q 019985 302 FTVKPWDNGGG 312 (332)
Q Consensus 302 ~~~~~~~~~~~ 312 (332)
++..+....-+
T Consensus 22 L~lHY~sk~~~ 32 (75)
T PF06667_consen 22 LILHYRSKWKS 32 (75)
T ss_pred HHHHHHHhccc
Confidence 45555554433
No 220
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=22.00 E-value=2.7e+02 Score=19.00 Aligned_cols=53 Identities=17% Similarity=0.311 Sum_probs=24.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 223 KVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTAR 275 (332)
Q Consensus 223 ~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 275 (332)
.+-...+..|.....++..+..+=+.+|+.=...++....++..+...+..|.
T Consensus 8 ~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~ 60 (66)
T smart00397 8 EERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKAN 60 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444
No 221
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=21.99 E-value=7.8e+02 Score=24.34 Aligned_cols=103 Identities=13% Similarity=0.233 Sum_probs=50.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 019985 40 VNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLR---SRMDADVSAALKNAKLIKIRLEALDRSNAA 116 (332)
Q Consensus 40 ~~~~~F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~---~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~~ 116 (332)
.++...=..+..++..+..+...+...-..+... ......+..... .+|-..+.+|...+......+..|-+++..
T Consensus 18 ~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~-~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~ 96 (383)
T PF04100_consen 18 QSLSNLDELIAKLRKEIRELDEEIKELVREQSSS-GQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQ 96 (383)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555666677777766666543332211 111112222223 333344555556666666666666544332
Q ss_pred hcCCCCCCCCChhHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 019985 117 NRSLPGCGPGSSSDRTRTSVVNGL--RKKLKDSMESFNELR 155 (332)
Q Consensus 117 ~r~~~~~~~~s~~~rir~~q~~~L--~~~f~~~~~~fq~~Q 155 (332)
-+..++|...++ -++|+-++..|....
T Consensus 97 ------------LD~AKrNLT~SIT~LkrL~MLv~a~~qL~ 125 (383)
T PF04100_consen 97 ------------LDNAKRNLTQSITTLKRLQMLVTAVEQLK 125 (383)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234455554433 366666666666553
No 222
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=21.41 E-value=1.2e+02 Score=27.82 Aligned_cols=8 Identities=13% Similarity=0.364 Sum_probs=3.0
Q ss_pred ccccCCCC
Q 019985 305 KPWDNGGG 312 (332)
Q Consensus 305 ~~~~~~~~ 312 (332)
-.|+.+.+
T Consensus 53 ~~~r~r~~ 60 (226)
T TIGR01433 53 FAWKYRAT 60 (226)
T ss_pred eeEEEecc
Confidence 33333333
No 223
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=21.27 E-value=1.8e+02 Score=25.31 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhHHH
Q 019985 255 SQVQRANSYVRGGTERLQTARKYQLSTRKWTC 286 (332)
Q Consensus 255 ~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c 286 (332)
.++..-.-..+++.++|++..+......+|..
T Consensus 75 ~~~~~~~~~~~ea~~~L~~I~~~~~~y~~~~~ 106 (193)
T PF06738_consen 75 RRIVAGQLSLEEAIERLDEIDREPPRYPPWLV 106 (193)
T ss_pred HHHhcCCCCHHHHHHHHHHHhhCCCCCCHHHH
Confidence 33344455667777888777666655555543
No 224
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=21.16 E-value=5.6e+02 Score=22.38 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=12.1
Q ss_pred CCCCCChHHHHHHHHHH
Q 019985 36 STGGVNLDKFFDDVESV 52 (332)
Q Consensus 36 ~~~~~~~~~F~~~v~~I 52 (332)
|....+++.||.....|
T Consensus 79 S~~K~Pf~~~~k~~~~i 95 (163)
T PF03233_consen 79 SKSKSPFESFFKDLSKI 95 (163)
T ss_pred ccCCCcHHHHHHHHHHH
Confidence 55567777888877666
No 225
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=21.12 E-value=97 Score=28.34 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=18.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcccc
Q 019985 280 STRKWTCIAITILLIIILFVVLFTVKPWD 308 (332)
Q Consensus 280 ~~rk~~c~~i~~~iiii~~i~~~~~~~~~ 308 (332)
++||.-.+|=++++|++|+|+++..-.++
T Consensus 8 KrRK~N~iLNiaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 8 KRRKTNKILNIAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHhhhhee
Confidence 45677777777777776666654444444
No 226
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=20.98 E-value=4.1e+02 Score=27.87 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=12.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHh
Q 019985 220 DAVKVLEKNLQELHQVFLDMAVLVQA 245 (332)
Q Consensus 220 ~ei~~Ie~~i~eL~~lf~dla~lV~~ 245 (332)
.+++.++++|..|++=..-|+.+|-+
T Consensus 435 ~d~~~~~~~i~~l~~~~~sl~~~v~q 460 (561)
T PF00429_consen 435 EDLQALEDSISALQEQLTSLAEVVLQ 460 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444445555554444444444443
No 227
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=20.71 E-value=4.3e+02 Score=21.83 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 232 LHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTAR 275 (332)
Q Consensus 232 L~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 275 (332)
|.++|..|..|++.=..-++.+|..--.|-..+..+..+|++..
T Consensus 2 lKdt~~kmkeL~e~~~~D~~K~EKGNKAAGtRaRK~sleLeKLa 45 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAEKAEKGNKAAGTRARKASLELEKLA 45 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 45666666666654444445566666667777777777776654
No 228
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=20.69 E-value=8.9e+02 Score=24.50 Aligned_cols=56 Identities=13% Similarity=0.284 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 88 RMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNEL 154 (332)
Q Consensus 88 kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~~~r~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~fq~~ 154 (332)
+|......+......++.-++.|.++... | +| |....++.++...+..+-.+....
T Consensus 210 ~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~-R---gv-------Rp~~~qle~v~kdi~~a~~~L~~m 265 (424)
T PF03915_consen 210 KLSEESDRLLTKVDDLQDLVEDLRKDVVQ-R---GV-------RPSPKQLETVAKDISRASKELKKM 265 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c---CC-------cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555555554432 1 12 223445666666666666665554
No 229
>COG4371 Predicted membrane protein [Function unknown]
Probab=20.63 E-value=89 Score=29.34 Aligned_cols=27 Identities=26% Similarity=0.038 Sum_probs=12.4
Q ss_pred HHhccccCCCC---CCCCCCCCCCCCCCCC
Q 019985 302 FTVKPWDNGGG---NGGGGSSPQNPTPQAQ 328 (332)
Q Consensus 302 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 328 (332)
++|-...++.+ .+|.++...+||.+++
T Consensus 118 ~vv~~~Rr~~ssGe~~g~~~~~S~ptv~~~ 147 (334)
T COG4371 118 GVVGMMRRNLSSGEARGLSSLGSSPTVQAV 147 (334)
T ss_pred HHHHHHHhcCCCCCcCCccccCCCCceeEE
Confidence 44444444333 3334444556665543
No 230
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=20.61 E-value=25 Score=29.79 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 019985 219 HDAVKVLEKNLQELHQVFLD 238 (332)
Q Consensus 219 ~~ei~~Ie~~i~eL~~lf~d 238 (332)
.+++..++..+..|.....+
T Consensus 111 ~~~~~~~~~~l~~l~~~l~~ 130 (183)
T PF01105_consen 111 KEHLDPLEESLEKLESNLKE 130 (183)
T ss_dssp --------------------
T ss_pred hhhhhhhHHHHHHHHHHHHH
Confidence 34455555544444443333
No 231
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=20.57 E-value=1.5e+02 Score=29.64 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019985 50 ESVKDELKELERLHNSLQ 67 (332)
Q Consensus 50 ~~I~~~I~~I~~~i~~L~ 67 (332)
..|..+++.|..-++.|.
T Consensus 69 ~~i~~~~dri~~wLe~l~ 86 (436)
T PTZ00208 69 GYIEFELDRLDYWLEKLN 86 (436)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 334444444444444443
No 232
>PF05802 EspB: Enterobacterial EspB protein
Probab=20.46 E-value=6.8e+02 Score=23.94 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=20.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHH
Q 019985 222 VKVLEKNLQELHQVFLDMAVLVQ----AQGEQLDDIESQVQRA 260 (332)
Q Consensus 222 i~~Ie~~i~eL~~lf~dla~lV~----~Qge~id~Ie~nv~~a 260 (332)
+-.|..-|.+|.+||.+|=.++. .|.++==.|..|+.+.
T Consensus 43 ~adIs~lileL~eL~kKLRdiLq~YNQKQQ~LgW~IQvasmqt 85 (317)
T PF05802_consen 43 IADISDLILELAELFKKLRDILQDYNQKQQELGWEIQVASMQT 85 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34455556666666666655552 3444444444444433
No 233
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=20.42 E-value=2.2e+02 Score=27.29 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 019985 229 LQELHQVFLDMAVLVQ 244 (332)
Q Consensus 229 i~eL~~lf~dla~lV~ 244 (332)
..+|.+|-..|+.-|.
T Consensus 294 ~~~Ld~lA~~l~~~~N 309 (322)
T TIGR02492 294 QSQLDQLAKTLANEFN 309 (322)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 234
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.20 E-value=86 Score=26.06 Aligned_cols=17 Identities=12% Similarity=-0.048 Sum_probs=8.3
Q ss_pred HHHHHHHHhccccCCCC
Q 019985 296 ILFVVLFTVKPWDNGGG 312 (332)
Q Consensus 296 i~~i~~~~~~~~~~~~~ 312 (332)
|++|++|+...+...-+
T Consensus 78 Ig~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 44444466666666655
No 235
>PHA00407 phage lambda Rz1-like protein
Probab=20.11 E-value=1.7e+02 Score=22.27 Aligned_cols=15 Identities=40% Similarity=0.789 Sum_probs=7.3
Q ss_pred hhhHHHHHHHHHHHH
Q 019985 281 TRKWTCIAITILLII 295 (332)
Q Consensus 281 ~rk~~c~~i~~~iii 295 (332)
-++|...+|-+++|+
T Consensus 28 l~rwkaaLIGlllic 42 (84)
T PHA00407 28 LRRWKAALIGLLLIC 42 (84)
T ss_pred hHHHHHHHHHHHHHH
Confidence 356665554444333
No 236
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.05 E-value=2.8e+02 Score=27.66 Aligned_cols=41 Identities=32% Similarity=0.512 Sum_probs=18.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 019985 224 VLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYV 264 (332)
Q Consensus 224 ~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v 264 (332)
.+-+.+......|.++-.....-||.-=+++.-++...+|.
T Consensus 109 sls~al~~~~~~F~~~~~~~v~~gE~~G~L~~~l~~la~y~ 149 (397)
T COG1459 109 SLSEALAQLPGVFPDLYVAMVAAGERSGNLDEVLQRLAKYL 149 (397)
T ss_pred cHHHHHHhCcccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34444444444444444444445554444444444444333
No 237
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=20.02 E-value=54 Score=22.90 Aligned_cols=17 Identities=12% Similarity=0.213 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhccccC
Q 019985 293 LIIILFVVLFTVKPWDN 309 (332)
Q Consensus 293 iiii~~i~~~~~~~~~~ 309 (332)
+++++.|++++.+-.++
T Consensus 24 vlfi~Gi~iils~kckC 40 (50)
T PF02038_consen 24 VLFILGILIILSGKCKC 40 (50)
T ss_dssp HHHHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHcCcccc
Confidence 33334444344443443
Done!