Query 019985
Match_columns 332
No_of_seqs 177 out of 1334
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 10:02:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019985.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019985hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_B Syntaxin 1A, syntaxin b 100.0 4.8E-43 1.6E-47 326.7 16.1 243 37-287 25-267 (267)
2 2xhe_B Syntaxin1; exocytosis, 100.0 4.7E-38 1.6E-42 294.8 14.3 241 36-282 37-279 (279)
3 1fio_A SSO1 protein; four heli 100.0 3.4E-30 1.2E-34 229.0 20.6 193 41-247 3-196 (196)
4 3hd7_B Syntaxin-1A; membrane p 99.9 7.9E-27 2.7E-31 189.0 14.5 96 207-302 8-103 (109)
5 3c98_B Syntaxin-1A; protein co 99.9 2.1E-23 7.3E-28 192.3 16.5 242 38-287 38-279 (279)
6 1jth_B Syntaxin 1A; coiled-coi 99.9 2.1E-23 7.2E-28 158.6 10.2 77 211-287 1-77 (77)
7 1s94_A S-syntaxin; three helix 99.9 7.9E-22 2.7E-26 173.2 9.4 147 38-190 34-180 (180)
8 2nps_B Syntaxin 13, vesicle-as 99.9 1.9E-21 6.6E-26 145.5 9.7 70 216-285 2-71 (71)
9 1sfc_B Protein (syntaxin 1A), 99.8 6.7E-21 2.3E-25 146.8 10.0 76 207-282 8-83 (83)
10 3b5n_B Protein SSO1; snare com 99.8 2.9E-20 9.9E-25 138.3 10.8 69 211-279 1-69 (69)
11 1n7s_B Syntaxin 1A; neuronal s 99.8 5.4E-19 1.8E-23 131.1 9.0 66 210-275 2-67 (68)
12 1ez3_A Syntaxin-1A; three heli 99.8 9.7E-18 3.3E-22 138.6 14.0 122 38-164 3-124 (127)
13 1gl2_B Syntaxin 7; membrane pr 99.8 2E-18 6.7E-23 126.9 8.1 63 214-276 3-65 (65)
14 2dnx_A Syntaxin-12; snare, HAB 98.8 2.6E-07 8.9E-12 76.5 16.0 116 40-166 7-122 (130)
15 2nps_D Syntaxin-6; vesicle fus 97.4 0.00051 1.7E-08 52.0 7.7 66 215-280 14-79 (82)
16 3hd7_B Syntaxin-1A; membrane p 97.3 0.0088 3E-07 47.5 13.7 87 211-301 19-105 (109)
17 1n7s_D SNAP-25A; neuronal snar 97.2 0.0026 8.7E-08 45.9 9.5 57 217-273 7-63 (66)
18 1gl2_D Syntaxin 8, vesicle tra 97.2 0.0011 3.7E-08 47.8 7.3 59 215-273 4-62 (65)
19 1sfc_D Protein (SNAP-25B), pro 97.0 0.0043 1.5E-07 47.3 9.5 58 216-273 25-82 (87)
20 3hd7_A Vesicle-associated memb 96.9 0.03 1E-06 43.0 12.9 41 221-261 6-46 (91)
21 1l4a_D S-SNAP25 fusion protein 96.8 0.0053 1.8E-07 46.9 7.9 57 217-273 27-83 (87)
22 1hs7_A Syntaxin VAM3; UP-and-D 96.7 0.017 5.7E-07 45.0 10.4 81 55-163 11-92 (97)
23 3b5n_D Protein transport prote 96.7 0.013 4.6E-07 42.0 9.0 56 218-273 8-63 (64)
24 1nhl_A Synaptosomal-associated 94.9 0.17 5.8E-06 34.9 8.1 46 227-272 7-52 (54)
25 3b5n_C Protein transport prote 93.5 0.75 2.6E-05 33.4 9.4 41 237-277 29-69 (70)
26 1n7s_C SNAP-25A; neuronal snar 93.1 1.2 4.1E-05 33.0 10.3 53 221-273 24-76 (79)
27 2kog_A Vesicle-associated memb 93.0 0.02 7E-07 46.2 0.3 38 221-258 34-71 (119)
28 1l4a_C S-SNAP25 fusion protein 89.4 0.68 2.3E-05 34.8 5.5 49 223-271 30-78 (83)
29 1gl2_C VTI1B, vesicle transpor 83.5 9.1 0.00031 27.0 8.6 51 222-272 11-61 (65)
30 3hd7_A Vesicle-associated memb 82.2 14 0.00047 27.8 12.6 26 209-234 22-47 (91)
31 2nps_B Syntaxin 13, vesicle-as 81.6 9.6 0.00033 27.2 8.3 63 213-275 6-68 (71)
32 3ghg_A Fibrinogen alpha chain; 76.5 55 0.0019 32.4 14.2 23 136-158 132-154 (562)
33 1jth_B Syntaxin 1A; coiled-coi 75.5 20 0.00069 25.8 9.4 65 212-276 9-73 (77)
34 3ghg_A Fibrinogen alpha chain; 74.3 43 0.0015 33.2 12.8 17 214-230 139-155 (562)
35 1wlq_A Geminin; coiled-coil; 2 69.8 31 0.0011 25.6 8.6 65 189-254 15-79 (83)
36 4dnd_A Syntaxin-10, SYN10; str 65.7 51 0.0017 26.4 11.6 97 42-146 26-123 (130)
37 1n7s_B Syntaxin 1A; neuronal s 63.1 36 0.0012 23.8 9.5 56 213-268 12-67 (68)
38 1sfc_A VAMP 2, protein (synapt 60.6 52 0.0018 24.9 9.2 39 221-259 31-69 (96)
39 2nps_C Vesicle transport throu 57.6 53 0.0018 24.0 11.0 57 221-277 20-76 (81)
40 3b5n_B Protein SSO1; snare com 57.1 47 0.0016 23.3 9.8 57 213-269 10-66 (69)
41 1sfc_B Protein (syntaxin 1A), 56.9 54 0.0019 23.9 8.3 60 212-271 20-79 (83)
42 1deq_A Fibrinogen (alpha chain 56.8 1.3E+02 0.0046 28.4 14.2 16 214-229 142-157 (390)
43 2wvr_A Geminin; DNA replicatio 53.9 68 0.0023 27.7 8.7 76 190-266 93-168 (209)
44 1gl2_B Syntaxin 7; membrane pr 53.3 53 0.0018 22.7 8.2 55 214-268 10-64 (65)
45 1deq_A Fibrinogen (alpha chain 52.6 1.5E+02 0.005 28.2 11.5 37 37-73 49-86 (390)
46 1gl2_A Endobrevin; membrane pr 47.2 69 0.0023 22.2 7.5 38 221-258 10-47 (65)
47 2v71_A Nuclear distribution pr 45.1 1.5E+02 0.005 25.4 13.3 60 45-116 15-74 (189)
48 3efg_A Protein SLYX homolog; x 44.5 69 0.0024 23.3 6.5 46 221-266 15-60 (78)
49 2c5k_T Syntaxin TLG1, T-snare 44.1 1E+02 0.0034 23.2 9.3 87 43-152 6-92 (95)
50 3c98_B Syntaxin-1A; protein co 43.6 6.8 0.00023 34.4 1.0 66 212-277 211-276 (279)
51 1n7s_A Vesicle-associated memb 43.5 77 0.0026 21.7 8.7 39 221-259 5-43 (63)
52 3n27_A Fusion glycoprotein F0, 41.7 80 0.0027 23.1 6.2 61 215-277 15-75 (80)
53 3t98_B Nucleoporin NUP58/NUP45 41.0 1.1E+02 0.0039 22.9 10.2 71 40-110 4-77 (93)
54 2ww9_B Protein transport prote 40.5 15 0.00052 27.1 2.2 27 249-275 14-40 (80)
55 3b5n_A Synaptobrevin homolog 1 38.0 94 0.0032 21.2 8.5 38 221-258 3-40 (61)
56 2nps_A VAMP-4, vesicle-associa 37.4 1.1E+02 0.0037 21.7 6.6 38 222-259 10-47 (74)
57 2i9o_A MHB8A peptide; beta-hai 35.8 11 0.00038 22.7 0.7 12 309-320 12-23 (37)
58 1uii_A Geminin; human, DNA rep 34.4 1.4E+02 0.0048 22.1 8.5 55 190-245 24-78 (83)
59 1q90_R Cytochrome B6-F complex 33.6 37 0.0013 22.6 3.1 12 303-314 34-45 (49)
60 2l5g_B Putative uncharacterize 32.3 97 0.0033 19.9 4.7 28 43-70 5-32 (42)
61 2zxe_G FXYD10, phospholemman-l 30.3 35 0.0012 24.7 2.7 20 292-311 28-47 (74)
62 2jp3_A FXYD domain-containing 28.0 25 0.00085 25.0 1.5 23 290-312 24-46 (67)
63 3swy_A Cyclic nucleotide-gated 27.2 1.3E+02 0.0046 19.6 5.0 24 135-158 12-35 (46)
64 1m1j_C Fibrinogen gamma chain; 26.5 4.3E+02 0.015 25.2 13.5 41 29-71 14-55 (409)
65 2jo1_A Phospholemman; FXYD1, N 25.6 38 0.0013 24.3 2.1 22 291-312 24-45 (72)
66 2fcw_A Alpha-2-macroglobulin r 25.0 2.4E+02 0.0083 21.8 10.0 67 47-113 24-100 (109)
67 2beq_A E2 glycoprotein; viral 24.3 1.3E+02 0.0044 18.9 4.2 32 223-254 2-33 (38)
68 2akh_X Protein-export membrane 23.8 74 0.0025 23.0 3.6 14 297-310 15-28 (77)
69 2xhe_B Syntaxin1; exocytosis, 23.7 2.6E+02 0.009 24.7 8.1 61 221-281 211-271 (279)
70 3s8f_B Cytochrome C oxidase su 23.2 1.3E+02 0.0045 25.0 5.5 13 283-295 17-29 (168)
71 2dt7_A Splicing factor 3A subu 23.1 60 0.002 20.3 2.5 17 39-55 9-25 (38)
72 2lf0_A Uncharacterized protein 22.9 2.6E+02 0.009 22.0 6.7 45 53-97 9-53 (123)
73 1m56_D Cytochrome C oxidase; m 22.6 56 0.0019 21.9 2.5 8 283-290 33-40 (51)
74 1l4a_A Synaptobrevin; snare, s 22.5 2E+02 0.0069 20.6 5.8 39 221-259 16-54 (80)
75 2zxx_A Geminin; coiled-coil, c 22.2 2.3E+02 0.0079 20.6 8.2 42 192-234 14-55 (79)
76 2knc_A Integrin alpha-IIB; tra 22.2 35 0.0012 23.2 1.4 6 305-310 37-42 (54)
77 3swf_A CGMP-gated cation chann 21.9 1.7E+02 0.0057 21.2 5.0 25 134-158 13-37 (74)
78 1rh5_B Preprotein translocase 20.7 36 0.0012 24.7 1.3 22 253-274 5-26 (74)
79 1qle_D Cytochrome AA3, ccytoch 20.3 64 0.0022 20.8 2.3 6 283-288 25-30 (43)
No 1
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=100.00 E-value=4.8e-43 Score=326.69 Aligned_cols=243 Identities=24% Similarity=0.421 Sum_probs=195.0
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 019985 37 TGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAA 116 (332)
Q Consensus 37 ~~~~~~~~F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~~ 116 (332)
.++.+|+.||..|++|+.+|..|+.++.+|+.+|.+.++.++. .+.++.+|+.++.+++++++.|+.+|+.|+..+..
T Consensus 25 ~~~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~--~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~ 102 (267)
T 1dn1_B 25 DRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNP--DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ 102 (267)
T ss_dssp --CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3578999999999999999999999999999999988776553 23678999999999999999999999999887543
Q ss_pred hcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCChhHHHHHhhcCCchhHH
Q 019985 117 NRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFL 196 (332)
Q Consensus 117 ~r~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~krr~~~i~~~~~seeeie~~i~~g~~~~~~ 196 (332)
. +++.+.+++.|+|++|+..|+++|+++|.+|+.+|..|++.+|.++.|+ +.|.||++++++++.++++|+++.|.
T Consensus 103 ~---~~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq-~~i~~~~~tdeeie~~ie~g~~~~f~ 178 (267)
T 1dn1_B 103 E---EGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQ-LEITGRTTTSEELEDMLESGNPAIFA 178 (267)
T ss_dssp H---HHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTCCCCHHHHHHHHHTCSSCTTT
T ss_pred c---cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-hhccCCCCCHHHHHHHHhCCcHHHHH
Confidence 1 1123345677999999999999999999999999999999999999865 56679999999999999998877666
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 197 QKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARK 276 (332)
Q Consensus 197 q~~l~~~~~~q~~~~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 276 (332)
+..+.+ ..++..++.++++||++|.+||++|.||++||.||+.||++||++||+||+||+.|..||+.|+.+|.+|.+
T Consensus 179 q~~l~~--~~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~ 256 (267)
T 1dn1_B 179 SGIIMD--SSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 256 (267)
T ss_dssp TTCCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC--------
T ss_pred HHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543332 234567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhchhhHHHH
Q 019985 277 YQLSTRKWTCI 287 (332)
Q Consensus 277 ~qk~~rk~~c~ 287 (332)
|++++|||+||
T Consensus 257 ~q~~~rkk~~~ 267 (267)
T 1dn1_B 257 YQSKARRKKIM 267 (267)
T ss_dssp -----------
T ss_pred HHHHhcCcccC
Confidence 99999999886
No 2
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=4.7e-38 Score=294.77 Aligned_cols=241 Identities=24% Similarity=0.425 Sum_probs=180.1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 019985 36 STGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNA 115 (332)
Q Consensus 36 ~~~~~~~~~F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~ 115 (332)
.+++..|++|+..|++|+..|..|..++.+|..+|.+.+..+...+.+.++.+|+.++.+|+++++.|+.+|+.|+..+.
T Consensus 37 ~~~~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~ 116 (279)
T 2xhe_B 37 AQPEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENK 116 (279)
T ss_dssp ---CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999988776666666688999999999999999999999999998765
Q ss_pred hhcCCCCCCCCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCChhHHHHHhhcCCch
Q 019985 116 ANRSLPGCGPGSS--SDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESE 193 (332)
Q Consensus 116 ~~r~~~~~~~~s~--~~rir~~q~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~krr~~~i~~~~~seeeie~~i~~g~~~ 193 (332)
..+..++|..+++ +.|++++++..|+++|+++|.+|+.+|..|.+.+|.++.| |+.+.+|.+++++++.++++|++.
T Consensus 117 ~~~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R-~~~i~~~~~~~ee~~~~~e~g~~~ 195 (279)
T 2xhe_B 117 RAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVAR-QCRVVEPSLSDDAIQKVIEHGTEG 195 (279)
T ss_dssp TTHHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-SCCSSCCCCSSTTHHHHHHHC---
T ss_pred HhhhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCCHHHHHHHHhCCchH
Confidence 3221122323322 5699999999999999999999999999998888887764 566778999999999999988766
Q ss_pred hHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 194 TFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQT 273 (332)
Q Consensus 194 ~~~q~~l~~~~~~q~~~~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~k 273 (332)
.|.+ .. ..+....+.++++|+++|.+||++|.||++||.||+.||++||++||+||+||+.|..||++|+.+|.+
T Consensus 196 ~f~q--~~---~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~k 270 (279)
T 2xhe_B 196 IFSG--MR---LEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQ 270 (279)
T ss_dssp -------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC---------
T ss_pred HHHH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654 11 112345677899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhchh
Q 019985 274 ARKYQLSTR 282 (332)
Q Consensus 274 A~~~qk~~r 282 (332)
|.+|++++|
T Consensus 271 A~~~qk~~R 279 (279)
T 2xhe_B 271 ARHYQESAR 279 (279)
T ss_dssp ---------
T ss_pred HHHHhHccC
Confidence 999999876
No 3
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.97 E-value=3.4e-30 Score=228.96 Aligned_cols=193 Identities=21% Similarity=0.351 Sum_probs=168.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCC
Q 019985 41 NLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSL 120 (332)
Q Consensus 41 ~~~~F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~~~r~~ 120 (332)
.|+.||..|++|+.+|..|+.++..|..+|.+.+..++..+.+.++.+|+.++.+++++++.|+.+|+.|+..+.
T Consensus 3 ~~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~----- 77 (196)
T 1fio_A 3 DFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGI----- 77 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----
Confidence 488999999999999999999999999999998888887777789999999999999999999999999987521
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCChhHHHHHhhcCCchhHHHHHH
Q 019985 121 PGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAI 200 (332)
Q Consensus 121 ~~~~~~s~~~rir~~q~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~krr~~~i~~~~~seeeie~~i~~g~~~~~~q~~l 200 (332)
..|++++++.+|+++|+++|.+|+.+|..|.+.||+++.|+|.. .+|++++++++.++++|+...+|++.+
T Consensus 78 --------~~r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i-~~~~~~~~e~~~~~~~~~~~~~f~~~~ 148 (196)
T 1fio_A 78 --------HDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMI-IQPEATEDEVEAAISDVGGQQIFSQAL 148 (196)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTCCHHHHHHHTSHHHHHHHHHHHT
T ss_pred --------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCHHHHHHHHHcCCchhHHHHHH
Confidence 35899999999999999999999999999999999999987654 578899999999987544455555554
Q ss_pred HH-hhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 019985 201 QE-QGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQG 247 (332)
Q Consensus 201 ~~-~~~~q~~~~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qg 247 (332)
.. ++..++...++++++||++|.+||++|.|||+||.|||.||++||
T Consensus 149 ~~~~~~~~~~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 149 LNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 32 334456778999999999999999999999999999999999998
No 4
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.94 E-value=7.9e-27 Score=188.97 Aligned_cols=96 Identities=33% Similarity=0.520 Sum_probs=86.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHH
Q 019985 207 RILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTC 286 (332)
Q Consensus 207 q~~~~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c 286 (332)
+++.+++++++||++|.+||++|.||++||+||+.||++||++||+||+|++.|.+||++|+.+|.+|.+|||++|||+|
T Consensus 8 ~a~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~ 87 (109)
T 3hd7_B 8 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 87 (109)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcce
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHH
Q 019985 287 IAITILLIIILFVVLF 302 (332)
Q Consensus 287 ~~i~~~iiii~~i~~~ 302 (332)
|++++++|+++++.++
T Consensus 88 i~l~~~~i~~~i~~~~ 103 (109)
T 3hd7_B 88 MIIICCVILGIIIAST 103 (109)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHH
Confidence 8877766665554443
No 5
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.90 E-value=2.1e-23 Score=192.31 Aligned_cols=242 Identities=24% Similarity=0.420 Sum_probs=175.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 019985 38 GGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAAN 117 (332)
Q Consensus 38 ~~~~~~~F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~~~ 117 (332)
.+.+|++||.+|++|+..|..|...+.+|..++.+.+.... +.......++.++.++..++..++..++.+.......
T Consensus 38 ~~~~m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~ 115 (279)
T 3c98_B 38 RDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPN--PDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQE 115 (279)
T ss_dssp -CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999988765443 3344567888999999999999999888887655432
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCChhHHHHHhhcCCchhHHH
Q 019985 118 RSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQ 197 (332)
Q Consensus 118 r~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~krr~~~i~~~~~seeeie~~i~~g~~~~~~q 197 (332)
. ..+......+.+.+|.+.|...|..++..|...+..|...+++.+.+. ....++.+++.+.......+....+..
T Consensus 116 ~---~i~~~~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~evr~l-a~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (279)
T 3c98_B 116 E---GLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQ-LEITGRTTTSEELEDMLESGNPAIFAS 191 (279)
T ss_dssp H---TTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTCCCCHHHHHHHHHSCCTTSSTT
T ss_pred h---hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCccchHHHHHHHhhhhHHHHH
Confidence 2 123345567889999999999999999999999999988888888644 344566666655444443443332222
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 198 KAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKY 277 (332)
Q Consensus 198 ~~l~~~~~~q~~~~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~ 277 (332)
... .....+...+.++++++..+..|+.+|.+|+++|.+|+.+|.+|++++|+|++||+.+.++|+.|..+|.+|.+|
T Consensus 192 ~~~--~~~~~~~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~ 269 (279)
T 3c98_B 192 GII--MDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 269 (279)
T ss_dssp TSC--SCSSSTTHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC---------
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111234556788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhhHHHH
Q 019985 278 QLSTRKWTCI 287 (332)
Q Consensus 278 qk~~rk~~c~ 287 (332)
++++|||+||
T Consensus 270 q~~~Rkkk~i 279 (279)
T 3c98_B 270 QSKARRKKIM 279 (279)
T ss_dssp ----------
T ss_pred HHHHhCcCcC
Confidence 9999999875
No 6
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.89 E-value=2.1e-23 Score=158.64 Aligned_cols=77 Identities=39% Similarity=0.641 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q 019985 211 TINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCI 287 (332)
Q Consensus 211 ~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~ 287 (332)
+|+++++|+++|.+||++|.||++||.||+.||.+||++||+||+||+.|..||++|+.+|.+|.+|++++|||+||
T Consensus 1 ~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~i 77 (77)
T 1jth_B 1 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 77 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999876
No 7
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=99.86 E-value=7.9e-22 Score=173.18 Aligned_cols=147 Identities=14% Similarity=0.341 Sum_probs=103.1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 019985 38 GGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAAN 117 (332)
Q Consensus 38 ~~~~~~~F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~~~ 117 (332)
++.+|+.||.+|++|+..|..|..++.+|+.+|.+++..+ .+.+.++.+|+.++.+|+++++.|+.+|+.|+..+...
T Consensus 34 ~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~--~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~ 111 (180)
T 1s94_A 34 GGGFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAP--QTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQE 111 (180)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999987753 35668899999999999999999999999999887652
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCChhHHHHHhhcC
Q 019985 118 RSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTG 190 (332)
Q Consensus 118 r~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~krr~~~i~~~~~seeeie~~i~~g 190 (332)
+++++++++.|+|++|+.+|+++|+++|.+|+.+|..|++.||++++ ||+.|.||++|+++|++|+++|
T Consensus 112 ---~~~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~-Rq~~I~~~~~teeeie~~ie~G 180 (180)
T 1s94_A 112 ---EHSNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIK-RQMEITGRTTTNEELEDMLESG 180 (180)
T ss_dssp ---C-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC-------------------------
T ss_pred ---hccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCCHHHHHHHHhCc
Confidence 44556677889999999999999999999999999999999999998 5667789999999999999875
No 8
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.85 E-value=1.9e-21 Score=145.50 Aligned_cols=70 Identities=31% Similarity=0.546 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHH
Q 019985 216 QERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWT 285 (332)
Q Consensus 216 ~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~ 285 (332)
++|+++|.+|+++|.||++||.||+.||.+||++||+||+||+.|..||++|..+|.+|.+|++++|||+
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~ 71 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM 71 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999984
No 9
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.84 E-value=6.7e-21 Score=146.78 Aligned_cols=76 Identities=39% Similarity=0.623 Sum_probs=70.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 019985 207 RILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTR 282 (332)
Q Consensus 207 q~~~~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~r 282 (332)
+++..+.++++|+++|.+|+++|.||++||.||+.||.+||++||+||+||+.|..||++|..+|.+|.+|++++|
T Consensus 8 ~~~~~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 83 (83)
T 1sfc_B 8 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (83)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 4567889999999999999999999999999999999999999999999999999999999999999999999876
No 10
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.83 E-value=2.9e-20 Score=138.30 Aligned_cols=69 Identities=36% Similarity=0.451 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019985 211 TINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQL 279 (332)
Q Consensus 211 ~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk 279 (332)
+|.++++|+++|.+|+++|.||++||.||+.||.+||++||+||+||+.|..||++|+.+|.+|.+|+|
T Consensus 1 al~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 1 ALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 367899999999999999999999999999999999999999999999999999999999999999986
No 11
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.78 E-value=5.4e-19 Score=131.06 Aligned_cols=66 Identities=39% Similarity=0.661 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 210 DTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTAR 275 (332)
Q Consensus 210 ~~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 275 (332)
.+++++++|+++|.+|+++|.||++||.||+.||.+||++||+||+||+.|..||++|+.+|.+|.
T Consensus 2 ~~l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 2 SALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367899999999999999999999999999999999999999999999999999999999999985
No 12
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=99.76 E-value=9.7e-18 Score=138.65 Aligned_cols=122 Identities=16% Similarity=0.292 Sum_probs=107.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 019985 38 GGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAAN 117 (332)
Q Consensus 38 ~~~~~~~F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~~~ 117 (332)
++.+|+.||.+|++|+..|..|+.++.+|..+|.+++..+++ .+.++.+|+.++.+|.++++.|+.+|+.|+..+...
T Consensus 3 ~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~--~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~ 80 (127)
T 1ez3_A 3 RDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNP--DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQE 80 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999999876653 557899999999999999999999999999887642
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 118 RSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRD 164 (332)
Q Consensus 118 r~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~fq~~Q~~~~~~~k~ 164 (332)
+++++++++.|+|++|+.+|+++|+++|.+|+.+|..|++.++.
T Consensus 81 ---~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~ 124 (127)
T 1ez3_A 81 ---EGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKG 124 (127)
T ss_dssp ---HTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---cccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788899999999999999999999999998766555443
No 13
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.75 E-value=2e-18 Score=126.85 Aligned_cols=63 Identities=25% Similarity=0.586 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 214 EIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARK 276 (332)
Q Consensus 214 ~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 276 (332)
++++|+++|.+|+++|.+|++||.||+.||.+||++||+||+||+.|..||++|..+|.+|.+
T Consensus 3 ~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 3 HMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999999999999999999999999864
No 14
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=2.6e-07 Score=76.46 Aligned_cols=116 Identities=12% Similarity=0.208 Sum_probs=96.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcC
Q 019985 40 VNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRS 119 (332)
Q Consensus 40 ~~~~~F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~~~r~ 119 (332)
...++|-...+.|..+|-.|+.++..|+++.. .++++.|..+++++|+.+...++.+++.+...|+.+..-..
T Consensus 7 ~d~~ef~~l~~~is~~I~~In~~vs~l~r~v~---~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~---- 79 (130)
T 2dnx_A 7 GQLRDFSSIIQTCSGNIQRISQATAQIKNLMS---QLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPL---- 79 (130)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----
Confidence 35677999999999999999999999887754 45778899999999999999999999999999999976210
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 120 LPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTV 166 (332)
Q Consensus 120 ~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~ 166 (332)
.+ ...++|.++.+...|.+.|..++++|+.+|..+.++.|..+
T Consensus 80 --~~--~~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~~ 122 (130)
T 2dnx_A 80 --PL--STSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKESI 122 (130)
T ss_dssp --CS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 01 12356888999999999999999999999988877666544
No 15
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=97.41 E-value=0.00051 Score=51.95 Aligned_cols=66 Identities=9% Similarity=0.166 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019985 215 IQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLS 280 (332)
Q Consensus 215 i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~ 280 (332)
+++.++.+..|..+|..|+.|-.+|+..|..|..+||.++..++.+...+..++..+.+..+..+.
T Consensus 14 ~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~ 79 (82)
T 2nps_D 14 GRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSD 79 (82)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 456667899999999999999999999999999999999999999999999999999988776553
No 16
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.25 E-value=0.0088 Score=47.52 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 019985 211 TINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAIT 290 (332)
Q Consensus 211 ~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~i~ 290 (332)
...++.+=++.+.+|..-..+|..|..+=+.++..=...+++...||+.+...+.+|.+.=+++. +...|++++++
T Consensus 19 R~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~r----kk~~i~l~~~~ 94 (109)
T 3hd7_B 19 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR----RKKIMIIICCV 94 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CcceehHHHHH
Confidence 34567777788999999999999999999999999999999999999999999999987754443 34465555544
Q ss_pred HHHHHHHHHHH
Q 019985 291 ILLIIILFVVL 301 (332)
Q Consensus 291 ~~iiii~~i~~ 301 (332)
++++++.+++.
T Consensus 95 i~~~i~~~~~~ 105 (109)
T 3hd7_B 95 ILGIIIASTIG 105 (109)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 44444444443
No 17
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=97.24 E-value=0.0026 Score=45.94 Aligned_cols=57 Identities=18% Similarity=0.303 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 217 ERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQT 273 (332)
Q Consensus 217 ~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~k 273 (332)
+..+.+..|...+..|+.|-.+|+..|..|..+||+|+..++.+...+..++..+.+
T Consensus 7 eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 7 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999999888765
No 18
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.22 E-value=0.0011 Score=47.78 Aligned_cols=59 Identities=19% Similarity=0.308 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 215 IQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQT 273 (332)
Q Consensus 215 i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~k 273 (332)
+++.++.+..|...+..|++|-.+|+..|..|..+||.++..++.+...+..++..+.+
T Consensus 4 ~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 4 MQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556789999999999999999999999999999999999999999999988887754
No 19
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.05 E-value=0.0043 Score=47.33 Aligned_cols=58 Identities=17% Similarity=0.302 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 216 QERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQT 273 (332)
Q Consensus 216 ~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~k 273 (332)
.+..+.+..|...+..|+.|-.+|+..|..|..+||+|+..++.+...+..++..+.+
T Consensus 25 ~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ 82 (87)
T 1sfc_D 25 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3556689999999999999999999999999999999999999999999999888765
No 20
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=96.87 E-value=0.03 Score=43.00 Aligned_cols=41 Identities=7% Similarity=0.186 Sum_probs=31.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRAN 261 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~ 261 (332)
.+.++...+.|+..++.+=-.-|-+.||-||.+++..+.-.
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~ 46 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 46 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 57778888888888888877788889998888876655433
No 21
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=96.77 E-value=0.0053 Score=46.87 Aligned_cols=57 Identities=16% Similarity=0.306 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 217 ERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQT 273 (332)
Q Consensus 217 ~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~k 273 (332)
+-.+.+..|...+..|+.|-.+|+..|..|.++||+|+..++.+...+..++..+.+
T Consensus 27 eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 27 DMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346689999999999999999999999999999999999999999999999888765
No 22
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=96.71 E-value=0.017 Score=44.97 Aligned_cols=81 Identities=11% Similarity=0.168 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCChhHHHH
Q 019985 55 ELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMD-ADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTR 133 (332)
Q Consensus 55 ~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~-~l~~~i~~~~~~Ik~~Lk~l~~~~~~~r~~~~~~~~s~~~rir 133 (332)
-|..+...+..|+.+.. -.++..|..+|+..|+ .++..+..+++.|. .|..+
T Consensus 11 li~t~s~niq~l~k~~~---qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~-~l~~l----------------------- 63 (97)
T 1hs7_A 11 LIETFAEQSRVLEKECT---KIGSKRDSKELRYKIETELIPNCTSVRDKIE-SNILI----------------------- 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHH---HTTSSSCCHHHHHHHHHTHHHHHHHHHHHHH-HSTHH-----------------------
T ss_pred HHHHHHHHHHHHHHHHH---HhCCCcchHHHHHHHHHHHHHHHHHHHHHHH-Hhccc-----------------------
Confidence 33344444444444433 3678889999999999 88888888887777 22111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 134 TSVVNGLRKKLKDSMESFNELRQRISSEYR 163 (332)
Q Consensus 134 ~~q~~~L~~~f~~~~~~fq~~Q~~~~~~~k 163 (332)
.+...|.+.|..+.+.|+.+|..|.++.+
T Consensus 64 -~qkeRL~~dF~~l~~~fQ~~qr~y~ek~~ 92 (97)
T 1hs7_A 64 -HQNGKLSADFKNLKTKYQSLQQSYNQRKS 92 (97)
T ss_dssp -HHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 03567889999999999999987765544
No 23
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.013 Score=42.01 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 218 RHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQT 273 (332)
Q Consensus 218 R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~k 273 (332)
-.+.+..|...+..|+.|-..|+..|..|.++||+|+..++.+...+..++..|.+
T Consensus 8 ~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 8 IDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34578899999999999999999999999999999999999999999999887753
No 24
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=94.91 E-value=0.17 Score=34.85 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=38.0
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 227 KNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQ 272 (332)
Q Consensus 227 ~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~ 272 (332)
+-+.|-.++-......+..|||.|++|+.+++.+..++..|.+.|.
T Consensus 7 ~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 7 GLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 3445555666667778999999999999999999999999988774
No 25
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=93.48 E-value=0.75 Score=33.39 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=33.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 237 LDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKY 277 (332)
Q Consensus 237 ~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~ 277 (332)
..-..++..|||.|++||.|++.+..+...|.++|..-..+
T Consensus 29 ~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~~ 69 (70)
T 3b5n_C 29 MNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKKL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33445678999999999999999999999999988765544
No 26
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=93.12 E-value=1.2 Score=33.03 Aligned_cols=53 Identities=21% Similarity=0.350 Sum_probs=44.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQT 273 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~k 273 (332)
.+++-.+-+.|-.++-......++.|||.|++|+.++..+..++..|.+.|..
T Consensus 24 s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~ 76 (79)
T 1n7s_C 24 STRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKD 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhh
Confidence 45555566667777888888899999999999999999999999999988754
No 27
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=92.95 E-value=0.02 Score=46.17 Aligned_cols=38 Identities=8% Similarity=0.210 Sum_probs=28.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQ 258 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~ 258 (332)
.+.++...+.|+..++.+=-.-|-+.||-||.+++..+
T Consensus 34 ~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe 71 (119)
T 2kog_A 34 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRAD 71 (119)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 56677777888888877777778888998888876544
No 28
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=89.40 E-value=0.68 Score=34.76 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=36.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 223 KVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERL 271 (332)
Q Consensus 223 ~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L 271 (332)
.+..+-+.+-.+.-..-..++..|||.|++||.+++....+...|.+.|
T Consensus 30 rr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L 78 (83)
T 1l4a_C 30 RRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNL 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555556667888999999999999999988887776554
No 29
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=83.50 E-value=9.1 Score=26.97 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=42.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 222 VKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQ 272 (332)
Q Consensus 222 i~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~ 272 (332)
+..-.+-+.|--++-.....-+..|+|.|.+....+..+..++.++...|.
T Consensus 11 l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~ 61 (65)
T 1gl2_C 11 IERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILR 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHH
Confidence 444445566667777788888999999999999999999999999988775
No 30
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=82.24 E-value=14 Score=27.80 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHH
Q 019985 209 LDTINEIQERHDAVKVLEKNLQELHQ 234 (332)
Q Consensus 209 ~~~l~~i~~R~~ei~~Ie~~i~eL~~ 234 (332)
...++.+-+|.+.+..|...-.+|..
T Consensus 22 ~~NI~kvL~RgekL~~L~~kt~~L~~ 47 (91)
T 3hd7_A 22 RVNVDKVLERDQKLSELDDRADALQA 47 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHH
Confidence 34556666777777666665555544
No 31
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=81.59 E-value=9.6 Score=27.19 Aligned_cols=63 Identities=16% Similarity=0.251 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 213 NEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTAR 275 (332)
Q Consensus 213 ~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 275 (332)
.++..=...|..|..-..+|..|..+=+.+|..=...++....||..+...+.+|...-+++.
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 68 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSR 68 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345566668888999999999999999999999999999999999999999999998766544
No 32
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=76.53 E-value=55 Score=32.44 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019985 136 VVNGLRKKLKDSMESFNELRQRI 158 (332)
Q Consensus 136 q~~~L~~~f~~~~~~fq~~Q~~~ 158 (332)
++..|...+.++..+-++++..+
T Consensus 132 nIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666665544
No 33
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=75.51 E-value=20 Score=25.83 Aligned_cols=65 Identities=14% Similarity=0.194 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 212 INEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARK 276 (332)
Q Consensus 212 l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 276 (332)
..++..=...|..|..-..+|..|..+=+.+|..=...++....||+.+...+.+|...-+++.+
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rk 73 (77)
T 1jth_B 9 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34566666788888889999999999999999999999999999999999999999887766554
No 34
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=74.27 E-value=43 Score=33.16 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhHH
Q 019985 214 EIQERHDAVKVLEKNLQ 230 (332)
Q Consensus 214 ~i~~R~~ei~~Ie~~i~ 230 (332)
.|++...+|++||..|.
T Consensus 139 nLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 139 NVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666667777777664
No 35
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=69.77 E-value=31 Score=25.55 Aligned_cols=65 Identities=17% Similarity=0.286 Sum_probs=37.7
Q ss_pred cCCchhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 019985 189 TGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIE 254 (332)
Q Consensus 189 ~g~~~~~~q~~l~~~~~~q~~~~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie 254 (332)
.+.++.+.+. +.+.++..+..+|.+-+.=|+.|..+...|..|.+.-.+|..|...=.-|-+.|+
T Consensus 15 e~pse~YWk~-lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i~ 79 (83)
T 1wlq_A 15 ENPSSQYWKE-VAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIE 79 (83)
T ss_dssp CCTTCTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455552 3344443345566666666777777777777777777766666654444444443
No 36
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=65.70 E-value=51 Score=26.43 Aligned_cols=97 Identities=18% Similarity=0.204 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCC
Q 019985 42 LDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLP 121 (332)
Q Consensus 42 ~~~F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~~~r~~~ 121 (332)
.+-||.-.++|...|..++.+...-..+..... ..+ +.++..+..++......|...|++|++.+.-...-|
T Consensus 26 ~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~-~~s-------~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np 97 (130)
T 4dnd_A 26 EDPFFVVRGEVQKAVNTARGLYQRWCELLQESA-AVG-------REELDWTTNELRNGLRSIEWDLEDLEETIGIVEANP 97 (130)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCC-Ccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 356999999999999999887765433222111 111 123444555555555566666666655543211000
Q ss_pred C-CCCCChhHHHHHHHHHHHHHHHHH
Q 019985 122 G-CGPGSSSDRTRTSVVNGLRKKLKD 146 (332)
Q Consensus 122 ~-~~~~s~~~rir~~q~~~L~~~f~~ 146 (332)
. .+-...+..-|+..+..+..++..
T Consensus 98 ~kF~l~~~Ei~~Rr~fV~~~r~~I~~ 123 (130)
T 4dnd_A 98 GKFKLPAGDLQERKVFVERMREAVQE 123 (130)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 011122334455556555555543
No 37
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=63.14 E-value=36 Score=23.83 Aligned_cols=56 Identities=13% Similarity=0.191 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 019985 213 NEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGT 268 (332)
Q Consensus 213 ~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~ 268 (332)
.++..=...|..|..-..+|..|..+=+.+|..=...++....||+.+...+.+|.
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555556677777777777777777777777777777777777777777777663
No 38
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=60.62 E-value=52 Score=24.86 Aligned_cols=39 Identities=8% Similarity=0.199 Sum_probs=31.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQR 259 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~ 259 (332)
.|.+|...+.|+..++.+=-.-|-+.||-||.+++-.+.
T Consensus 31 ~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~ 69 (96)
T 1sfc_A 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 577888888888888888888888999999888766544
No 39
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=57.57 E-value=53 Score=23.98 Aligned_cols=57 Identities=9% Similarity=0.070 Sum_probs=47.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKY 277 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~ 277 (332)
.|..-..-+.|=-++-..+..-+..|.|.|.+....+..+..++.++...|..-.+.
T Consensus 20 ~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr 76 (81)
T 2nps_C 20 RLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRR 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 455566667777777888888899999999999999999999999999888765543
No 40
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=57.07 E-value=47 Score=23.28 Aligned_cols=57 Identities=9% Similarity=0.216 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 019985 213 NEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTE 269 (332)
Q Consensus 213 ~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~ 269 (332)
.++..=...|..|..-..+|..|..+=+.+|..=...++....||+.+...+.+|..
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555567777777778888888888888887788888888888888888877765
No 41
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=56.91 E-value=54 Score=23.88 Aligned_cols=60 Identities=12% Similarity=0.154 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 212 INEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERL 271 (332)
Q Consensus 212 l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L 271 (332)
..++..=...|..|..-..+|..|..+=+.+|..=...++....||+.+...+.+|...-
T Consensus 20 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~q 79 (83)
T 1sfc_B 20 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446666777888889999999999999999999999999999999999999999987653
No 42
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=56.81 E-value=1.3e+02 Score=28.42 Aligned_cols=16 Identities=19% Similarity=0.383 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhH
Q 019985 214 EIQERHDAVKVLEKNL 229 (332)
Q Consensus 214 ~i~~R~~ei~~Ie~~i 229 (332)
.|++...+|++||..|
T Consensus 142 ~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 142 NVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566677888888887
No 43
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=53.94 E-value=68 Score=27.75 Aligned_cols=76 Identities=12% Similarity=0.192 Sum_probs=48.8
Q ss_pred CCchhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 019985 190 GESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRG 266 (332)
Q Consensus 190 g~~~~~~q~~l~~~~~~q~~~~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~ 266 (332)
+-++.+++ .+.+.++..+..+|.+-+.=|..|..++..|..|.++-.+|..|+..=..|.+-|+.=+....++.+.
T Consensus 93 ~Pse~YWk-~lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~~~e~ 168 (209)
T 2wvr_A 93 NPSSQYWK-EVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFES 168 (209)
T ss_dssp SCCTTHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred CCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC
Confidence 33456665 34455554456678888888888888888888888888888888877777777777666655555543
No 44
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=53.31 E-value=53 Score=22.74 Aligned_cols=55 Identities=13% Similarity=0.248 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 019985 214 EIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGT 268 (332)
Q Consensus 214 ~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~ 268 (332)
++..=...|..|..-..+|..|..+=+.+|..=...++....||..+...+.+|.
T Consensus 10 ~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 10 SIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555556777788888888888888888888888888888888888888887764
No 45
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=52.64 E-value=1.5e+02 Score=28.19 Aligned_cols=37 Identities=16% Similarity=0.333 Sum_probs=24.7
Q ss_pred CCCCChHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 019985 37 TGGVNLDKFFDDV-ESVKDELKELERLHNSLQTSHEKS 73 (332)
Q Consensus 37 ~~~~~~~~F~~~v-~~I~~~I~~I~~~i~~L~~l~~~~ 73 (332)
+.+.-|..-+.+. ..++..|++|+..+..+++.|...
T Consensus 49 PsGCrLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~ 86 (390)
T 1deq_A 49 PSGCRMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDS 86 (390)
T ss_pred CccchHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHH
Confidence 3456666655433 567788888888888877766543
No 46
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=47.17 E-value=69 Score=22.21 Aligned_cols=38 Identities=18% Similarity=0.410 Sum_probs=25.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQ 258 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~ 258 (332)
.|.++...+.|+..++.+=-.-|-+.|+-||.+.+-.+
T Consensus 10 ~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~ 47 (65)
T 1gl2_A 10 RVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTE 47 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45666777777777776666667777777777665443
No 47
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=45.08 E-value=1.5e+02 Score=25.38 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 019985 45 FFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAA 116 (332)
Q Consensus 45 F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~~ 116 (332)
|-..+......+..++..++++.. ..++|...|+.-+....+..+.++.++..+..+...
T Consensus 15 wk~~~~~~~q~~~~le~El~EFqe------------sSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~ 74 (189)
T 2v71_A 15 WKELSMKYKQSFQEARDELVEFQE------------GSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEA 74 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544432 244556667777777777777777777777766554
No 48
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=44.55 E-value=69 Score=23.27 Aligned_cols=46 Identities=9% Similarity=-0.013 Sum_probs=35.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRG 266 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~ 266 (332)
.|..||..+.-.-....+|+..|..|...||++...+..-...+..
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888999999999888877666555543
No 49
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=44.08 E-value=1e+02 Score=23.23 Aligned_cols=87 Identities=14% Similarity=0.219 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCC
Q 019985 43 DKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPG 122 (332)
Q Consensus 43 ~~F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~~~r~~~~ 122 (332)
+-|+...+++...|..+..++.+ ....+++ ..+.++...+.++......+...|.-+++.
T Consensus 6 DPF~~V~~D~~~ql~~l~~~~~~-------~~~~~~~----~~~~El~~~l~el~e~l~DL~~SI~i~e~~--------- 65 (95)
T 2c5k_T 6 DPFQQVVKDTKEQLNRINNYITR-------HNTAGDD----DQEEEIQDILKDVEETIVDLDRSIIVMKRD--------- 65 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-------TCCC--C----TTHHHHHHHHHHHHHHHHHHHHHHHHHHTS---------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH-------ccCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------
Confidence 45999999999999999887553 1111121 223445555555555555555555555432
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 123 CGPGSSSDRTRTSVVNGLRKKLKDSMESFN 152 (332)
Q Consensus 123 ~~~~s~~~rir~~q~~~L~~~f~~~~~~fq 152 (332)
...+..-|+..+..+..++..+-..++
T Consensus 66 ---~~~EI~~Rk~~v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 66 ---ENEDVSGREAQVKNIKQQLDALKLRFD 92 (95)
T ss_dssp ---TTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112345567777777777766555543
No 50
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=43.59 E-value=6.8 Score=34.43 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 212 INEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKY 277 (332)
Q Consensus 212 l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~ 277 (332)
...+..=...|..|...+.+|..+..+-+..+.+=...|+.+-.++..+...+.+|..+-.+++++
T Consensus 211 ~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkk 276 (279)
T 3c98_B 211 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRK 276 (279)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 344555566788888888888889889888888888888899999999999999998887776654
No 51
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=43.52 E-value=77 Score=21.72 Aligned_cols=39 Identities=8% Similarity=0.199 Sum_probs=30.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQR 259 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~ 259 (332)
.|.++...+.++..++.+=-.-|-+.|+-||.+++-.+.
T Consensus 5 ~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~ 43 (63)
T 1n7s_A 5 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 577788888888888888888888889888888765444
No 52
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=41.74 E-value=80 Score=23.13 Aligned_cols=61 Identities=18% Similarity=0.262 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 215 IQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKY 277 (332)
Q Consensus 215 i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~ 277 (332)
++.-.+.|.+|......+.-..+-+-..|..+|-+ .|.-++..|....+.....|+++...
T Consensus 15 Iq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~--dis~~l~~a~~~l~~sk~~~~~~~~~ 75 (80)
T 3n27_A 15 IESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGI--DISIELNKAKSDLEESKEWIRRSNQK 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--chhhhHhHHHhhHHHHHHHHHHHHHH
Confidence 45555566666666666655555555556666654 46677888889999999888887653
No 53
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=40.97 E-value=1.1e+02 Score=22.94 Aligned_cols=71 Identities=10% Similarity=0.119 Sum_probs=38.1
Q ss_pred CChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 40 VNLDKFF-DDVESVKDELKELERLHNSLQTSHEKSK--TLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEAL 110 (332)
Q Consensus 40 ~~~~~F~-~~v~~I~~~I~~I~~~i~~L~~l~~~~~--~~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l 110 (332)
..+.+|| ..|.+....|...+.-|+.++..-.... ...++.+....-.+++...-.+......|...++.+
T Consensus 4 ~~P~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~ 77 (93)
T 3t98_B 4 MAPADYFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVL 77 (93)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555 7788888998888888888876533211 133444444433444444333333333444444433
No 54
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=40.50 E-value=15 Score=27.14 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 249 QLDDIESQVQRANSYVRGGTERLQTAR 275 (332)
Q Consensus 249 ~id~Ie~nv~~a~~~v~~g~~~L~kA~ 275 (332)
|-|.++.-++...+.+..+..-|+.|.
T Consensus 14 ~~d~~~~~~e~~~~f~kd~~rvlk~~~ 40 (80)
T 2ww9_B 14 SNNQVEKLVEAPVEFVREGTQFLAKCK 40 (80)
T ss_dssp -------CCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677777777777777777776654
No 55
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=37.99 E-value=94 Score=21.15 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=29.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQ 258 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~ 258 (332)
.|.++...+.|+..++.+=-.-|-+.|+-||.+.+-.+
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~ 40 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKAD 40 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 46677888888888887777777888888887776544
No 56
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=37.39 E-value=1.1e+02 Score=21.71 Aligned_cols=38 Identities=21% Similarity=0.442 Sum_probs=25.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 019985 222 VKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQR 259 (332)
Q Consensus 222 i~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~ 259 (332)
|.++...+.|+..++.+=-.-|-+-|+-||.+.+-.+.
T Consensus 10 l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~ 47 (74)
T 2nps_A 10 IKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSES 47 (74)
T ss_dssp SHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45666677777777766666677778877777655443
No 57
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=35.78 E-value=11 Score=22.72 Aligned_cols=12 Identities=67% Similarity=1.417 Sum_probs=6.5
Q ss_pred CCCCCCCCCCCC
Q 019985 309 NGGGNGGGGSSP 320 (332)
Q Consensus 309 ~~~~~~~~~~~~ 320 (332)
-+|++|||||++
T Consensus 12 eggggggggsaa 23 (37)
T 2i9o_A 12 EGGGGGGGGSAA 23 (37)
T ss_dssp CCSCCCCSCSSH
T ss_pred ecCCCCCcchHH
Confidence 345555666654
No 58
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=34.38 E-value=1.4e+02 Score=22.05 Aligned_cols=55 Identities=13% Similarity=0.315 Sum_probs=41.3
Q ss_pred CCchhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 019985 190 GESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQA 245 (332)
Q Consensus 190 g~~~~~~q~~l~~~~~~q~~~~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~ 245 (332)
+.++.+.+ .+.+.++..+..+|.+-+.=|+.|..++..|..|.++..++..|+..
T Consensus 24 ~Pse~YWk-~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 24 NPSSQYWK-EVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555 34455554556778888888999999999999999999999888764
No 59
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=33.61 E-value=37 Score=22.60 Aligned_cols=12 Identities=8% Similarity=-0.091 Sum_probs=3.6
Q ss_pred HhccccCCCCCC
Q 019985 303 TVKPWDNGGGNG 314 (332)
Q Consensus 303 ~~~~~~~~~~~~ 314 (332)
+++++--+++.|
T Consensus 34 ~v~ffvpP~~gg 45 (49)
T 1q90_R 34 YGAFFVPPSSGG 45 (49)
T ss_dssp HHHHHSCC----
T ss_pred hheeecCCccCC
Confidence 444444444433
No 60
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.26 E-value=97 Score=19.87 Aligned_cols=28 Identities=14% Similarity=0.397 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 43 DKFFDDVESVKDELKELERLHNSLQTSH 70 (332)
Q Consensus 43 ~~F~~~v~~I~~~I~~I~~~i~~L~~l~ 70 (332)
++.++.++.|...|.+.+..+.+|+...
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKl 32 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQ 32 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777665443
No 61
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=30.27 E-value=35 Score=24.71 Aligned_cols=20 Identities=0% Similarity=0.031 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhccccCCC
Q 019985 292 LLIIILFVVLFTVKPWDNGG 311 (332)
Q Consensus 292 ~iiii~~i~~~~~~~~~~~~ 311 (332)
++++++.|++++.+..++..
T Consensus 28 ~vLfi~GI~iilS~kcrCk~ 47 (74)
T 2zxe_G 28 AVLCVIGIIILLAGKCRCKF 47 (74)
T ss_dssp HHHHHHHHHHHTTTC-----
T ss_pred HHHHHHHHHHHHcCccccCC
Confidence 33344444444544444433
No 62
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=27.99 E-value=25 Score=25.01 Aligned_cols=23 Identities=13% Similarity=-0.154 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhccccCCCC
Q 019985 290 TILLIIILFVVLFTVKPWDNGGG 312 (332)
Q Consensus 290 ~~~iiii~~i~~~~~~~~~~~~~ 312 (332)
+.++++++.|++++.+-+++...
T Consensus 24 fA~vLfi~GI~iilS~kcrCk~~ 46 (67)
T 2jp3_A 24 FGGLLCIAGIALALSGKCKCRRN 46 (67)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCcccccCC
Confidence 33444445555555565666554
No 63
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=27.16 E-value=1.3e+02 Score=19.60 Aligned_cols=24 Identities=13% Similarity=0.389 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 135 SVVNGLRKKLKDSMESFNELRQRI 158 (332)
Q Consensus 135 ~q~~~L~~~f~~~~~~fq~~Q~~~ 158 (332)
+.+..|..+|..++.+|...|.+.
T Consensus 12 ~~ld~LqTr~ArLlae~~ssq~Kl 35 (46)
T 3swy_A 12 SSLDTLQTRFARLLAEYNATQMKM 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788899999999999987543
No 64
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=26.49 E-value=4.3e+02 Score=25.18 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=30.7
Q ss_pred ccccCCCCCCCCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 019985 29 QMTENPNSTGGVNLDKFFDDVES-VKDELKELERLHNSLQTSHE 71 (332)
Q Consensus 29 e~~~~~~~~~~~~~~~F~~~v~~-I~~~I~~I~~~i~~L~~l~~ 71 (332)
+|+.+ =|.+..+..|+...+. +..+|..|+..+++++.+..
T Consensus 14 ~~G~~--CPT~C~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts 55 (409)
T 1m1j_C 14 RFGSY--CPTTCGIADFFNKYRLTTDGELLEIEGLLQQATNSTG 55 (409)
T ss_dssp GGCCE--EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCc--CCCcccHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 44444 3456789999988877 88999999888888876554
No 65
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=25.60 E-value=38 Score=24.30 Aligned_cols=22 Identities=9% Similarity=0.040 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhccccCCCC
Q 019985 291 ILLIIILFVVLFTVKPWDNGGG 312 (332)
Q Consensus 291 ~~iiii~~i~~~~~~~~~~~~~ 312 (332)
.++++++.|++++.+.+++...
T Consensus 24 A~vLfi~GI~iilS~KckCk~~ 45 (72)
T 2jo1_A 24 AGILFILGILIVLSRRCRCKFN 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCccccCCC
Confidence 3344444444455454544433
No 66
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=25.01 E-value=2.4e+02 Score=21.83 Aligned_cols=67 Identities=15% Similarity=0.190 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019985 47 DDVESVKDELKELERLHNSLQTSHEKSKT----------LHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRS 113 (332)
Q Consensus 47 ~~v~~I~~~I~~I~~~i~~L~~l~~~~~~----------~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~ 113 (332)
++.+.|+..+.-.+..+..++-++.+... .+...+.+...++...+-..+.++.++|+.-...|+..
T Consensus 24 ~ELeSlK~EL~HfE~rl~K~rH~~~el~l~~~k~~~~~~~g~~e~~s~~~ek~~~le~k~Kk~~~kV~Kl~~dl~~r 100 (109)
T 2fcw_A 24 KELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLSGR 100 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888887777777666554332 22222333333444555555666666666665555543
No 67
>2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1
Probab=24.33 E-value=1.3e+02 Score=18.89 Aligned_cols=32 Identities=9% Similarity=0.221 Sum_probs=24.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 019985 223 KVLEKNLQELHQVFLDMAVLVQAQGEQLDDIE 254 (332)
Q Consensus 223 ~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie 254 (332)
..+.+.+...+.-+..+-..|.+||+.+...-
T Consensus 2 ~q~~~g~~tv~~AL~KiQ~VVN~q~~aL~~Lt 33 (38)
T 2beq_A 2 SQIQESLTTTSTALGKLQDVVNQNAQALNTLV 33 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34666777788888888888888888887653
No 68
>2akh_X Protein-export membrane protein SECG; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_X
Probab=23.78 E-value=74 Score=22.97 Aligned_cols=14 Identities=14% Similarity=0.064 Sum_probs=6.9
Q ss_pred HHHHHHHhccccCC
Q 019985 297 LFVVLFTVKPWDNG 310 (332)
Q Consensus 297 ~~i~~~~~~~~~~~ 310 (332)
++|++++..+-+.+
T Consensus 15 ~LI~~VLlQ~~Kg~ 28 (77)
T 2akh_X 15 GLVGLIMLQQGKGA 28 (77)
T ss_pred HHHHHheeeCCCCC
Confidence 33444556665543
No 69
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=23.72 E-value=2.6e+02 Score=24.66 Aligned_cols=61 Identities=11% Similarity=0.212 Sum_probs=30.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLST 281 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~ 281 (332)
+|..=++.|.+|..-..+|+.|..+=+.||..=..-|+....||+.+...+..|...=+++
T Consensus 211 ~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA 271 (279)
T 2xhe_B 211 EIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQA 271 (279)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666666666566655555555566666666666666665544443
No 70
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=23.17 E-value=1.3e+02 Score=24.99 Aligned_cols=13 Identities=15% Similarity=0.779 Sum_probs=5.5
Q ss_pred hHHHHHHHHHHHH
Q 019985 283 KWTCIAITILLII 295 (332)
Q Consensus 283 k~~c~~i~~~iii 295 (332)
.|+.+.+++++++
T Consensus 17 ~w~~~~~~~~~~f 29 (168)
T 3s8f_B 17 GWLAFSLAMLFVF 29 (168)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4554444333333
No 71
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.06 E-value=60 Score=20.32 Aligned_cols=17 Identities=12% Similarity=0.438 Sum_probs=13.7
Q ss_pred CCChHHHHHHHHHHHHH
Q 019985 39 GVNLDKFFDDVESVKDE 55 (332)
Q Consensus 39 ~~~~~~F~~~v~~I~~~ 55 (332)
++.+.+|++.+.+|++-
T Consensus 9 ~~~f~~FY~rlk~Ike~ 25 (38)
T 2dt7_A 9 PNEFAEFYNRLKQIKEF 25 (38)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 45799999999988763
No 72
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=22.90 E-value=2.6e+02 Score=21.97 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHH
Q 019985 53 KDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAAL 97 (332)
Q Consensus 53 ~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~ 97 (332)
+..|..|++.++.++..........+..-...+.++++.+..+|.
T Consensus 9 K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~ 53 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIA 53 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554433333344444444444455555544444
No 73
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=22.63 E-value=56 Score=21.89 Aligned_cols=8 Identities=25% Similarity=0.941 Sum_probs=3.3
Q ss_pred hHHHHHHH
Q 019985 283 KWTCIAIT 290 (332)
Q Consensus 283 k~~c~~i~ 290 (332)
||-+++++
T Consensus 33 k~gt~~~~ 40 (51)
T 1m56_D 33 TWAAVVIV 40 (51)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 74
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=22.47 E-value=2e+02 Score=20.59 Aligned_cols=39 Identities=5% Similarity=0.183 Sum_probs=28.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 019985 221 AVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQR 259 (332)
Q Consensus 221 ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~ 259 (332)
.|.++...+.|+..++.+=-.-|-+.||-||.+++-.+.
T Consensus 16 ~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~ 54 (80)
T 1l4a_A 16 RLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADA 54 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 466677777777777777777778888888888765543
No 75
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=22.22 E-value=2.3e+02 Score=20.64 Aligned_cols=42 Identities=17% Similarity=0.413 Sum_probs=18.5
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHH
Q 019985 192 SETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQ 234 (332)
Q Consensus 192 ~~~~~q~~l~~~~~~q~~~~l~~i~~R~~ei~~Ie~~i~eL~~ 234 (332)
++.+.+. +.+.++..+..+|.+-+.=|.+|..+...|..|.+
T Consensus 14 se~YWk~-lAE~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~Lke 55 (79)
T 2zxx_A 14 SSQYWKE-VAEQRRKALYEALKENEKLHKEIEQKDSEIARLRK 55 (79)
T ss_dssp TCTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445442 33333333344555544445555544444444433
No 76
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.21 E-value=35 Score=23.23 Aligned_cols=6 Identities=0% Similarity=-0.003 Sum_probs=2.5
Q ss_pred ccccCC
Q 019985 305 KPWDNG 310 (332)
Q Consensus 305 ~~~~~~ 310 (332)
-|+++.
T Consensus 37 GFFkR~ 42 (54)
T 2knc_A 37 GFFKRN 42 (54)
T ss_dssp HHTTTT
T ss_pred CcccCC
Confidence 344443
No 77
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=21.94 E-value=1.7e+02 Score=21.17 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985 134 TSVVNGLRKKLKDSMESFNELRQRI 158 (332)
Q Consensus 134 ~~q~~~L~~~f~~~~~~fq~~Q~~~ 158 (332)
.+.+..|..+|..++.+|...|.+.
T Consensus 13 E~sld~LQTrfARLLaEy~ssQ~KL 37 (74)
T 3swf_A 13 ESSVDLLQTRFARILAEYESMQQKL 37 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999999999988544
No 78
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=20.66 E-value=36 Score=24.67 Aligned_cols=22 Identities=0% Similarity=0.157 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019985 253 IESQVQRANSYVRGGTERLQTA 274 (332)
Q Consensus 253 Ie~nv~~a~~~v~~g~~~L~kA 274 (332)
++..++...+.+..+..-++.|
T Consensus 5 ~~~~~e~~~~f~kd~~rvlk~~ 26 (74)
T 1rh5_B 5 FNQKIEQLKEFIEECRRVWLVL 26 (74)
T ss_dssp -------CCHHHHHHHHHHHSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555666665555544
No 79
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=20.29 E-value=64 Score=20.79 Aligned_cols=6 Identities=33% Similarity=0.955 Sum_probs=2.4
Q ss_pred hHHHHH
Q 019985 283 KWTCIA 288 (332)
Q Consensus 283 k~~c~~ 288 (332)
||-+++
T Consensus 25 k~gt~~ 30 (43)
T 1qle_D 25 TWVSIL 30 (43)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344333
Done!