Query 019986
Match_columns 332
No_of_seqs 115 out of 1226
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 10:03:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019986.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019986hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dqn_A Putative branched-chain 100.0 6.2E-74 2.1E-78 544.4 39.5 331 1-332 9-344 (345)
2 3dth_A Branched-chain amino ac 100.0 2.9E-74 9.9E-79 549.9 37.4 332 1-332 28-372 (372)
3 3uzo_A Branched-chain-amino-ac 100.0 2.1E-72 7.1E-77 535.8 34.9 329 1-331 24-358 (358)
4 3dtg_A Branched-chain amino ac 100.0 2.7E-71 9.1E-76 531.6 38.8 330 3-332 30-372 (372)
5 2a1h_A Branched chain aminotra 100.0 3.6E-69 1.2E-73 516.1 39.1 326 2-331 23-365 (365)
6 2coi_A Branched chain aminotra 100.0 3.5E-69 1.2E-73 518.6 38.2 328 1-332 42-386 (386)
7 3u0g_A Putative branched-chain 100.0 2.3E-64 8E-69 475.9 32.8 302 15-331 21-328 (328)
8 2eiy_A ILVE, branched-chain am 100.0 7.6E-62 2.6E-66 456.3 35.6 292 25-332 8-306 (308)
9 1iye_A Branched-chain amino ac 100.0 1.9E-61 6.4E-66 453.9 35.0 292 25-332 9-308 (309)
10 3daa_A D-amino acid aminotrans 100.0 1.4E-57 4.6E-62 421.1 32.3 267 25-316 3-275 (277)
11 1i2k_A 4-amino-4-deoxychorisma 100.0 9.7E-56 3.3E-60 407.3 30.9 262 25-314 2-266 (269)
12 2xpf_A 4-amino-4-deoxychorisma 100.0 1.7E-55 5.7E-60 410.1 30.2 274 8-317 14-290 (292)
13 3lul_A 4-amino-4-deoxychorisma 100.0 4.6E-55 1.6E-59 403.2 31.1 261 25-319 6-269 (272)
14 3sno_A Hypothetical aminotrans 100.0 3.7E-55 1.3E-59 411.0 25.6 269 25-316 17-313 (315)
15 3csw_A BCAT, putative branched 100.0 2.3E-53 7.8E-58 394.4 23.4 264 26-329 18-284 (285)
16 2zgi_A Putative 4-amino-4-deox 100.0 7.9E-48 2.7E-52 350.1 20.0 224 25-289 2-228 (246)
17 3qqm_A MLR3007 protein; struct 100.0 3.1E-43 1.1E-47 314.7 20.7 207 47-288 13-220 (221)
18 3ceb_A D-aminoacid aminotransf 100.0 1.8E-39 6.3E-44 284.8 18.2 189 47-283 2-194 (194)
19 2lqo_A Putative glutaredoxin R 36.3 16 0.00053 26.7 1.8 48 247-296 20-67 (92)
20 2kyr_A Fructose-like phosphotr 33.5 66 0.0023 24.5 5.0 45 236-280 16-70 (111)
21 2r48_A Phosphotransferase syst 23.4 1.1E+02 0.0036 23.1 4.5 57 236-296 13-79 (106)
22 2r4q_A Phosphotransferase syst 22.1 1.1E+02 0.0036 23.1 4.2 57 236-296 13-79 (106)
23 2m1z_A LMO0427 protein; homolo 21.0 1.3E+02 0.0045 22.6 4.6 45 236-280 13-67 (106)
No 1
>4dqn_A Putative branched-chain amino acid aminotransfera; aminotransferase, transferase; 1.97A {Streptococcus mutans}
Probab=100.00 E-value=6.2e-74 Score=544.44 Aligned_cols=331 Identities=42% Similarity=0.719 Sum_probs=301.7
Q ss_pred CCCCCCCCccccCCceEEEEeccceeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHH
Q 019986 1 MDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQT 80 (332)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~ 80 (332)
+||++||||..|||||..++|..+.|+||+++|.+++.|++.|++|+||||+|||||++++++|++++|+|++|++||.+
T Consensus 9 ~~~~~l~fg~~~td~m~~~~~~~~~w~nG~~vp~~~~~i~~~d~gl~yGdgvFE~ir~~~g~dg~~~~f~l~~Hl~RL~~ 88 (345)
T 4dqn_A 9 LDWKNLGFEYHKLPFRYISYYKDGKWDDGKLTEDATLHISESSPALHYGQEAFEGLKAYRTKDGSVQLFRPNMNAERLQR 88 (345)
T ss_dssp CCGGGCCSCCCCCSCEEEEEEETTEECCCEEESCCSCCCCTTCHHHHSCCEEECCEEEEECTTSCEEEESHHHHHHHHHH
T ss_pred CCchhcCCCCcccCceEEEEecCCcEECCEEeEhhhcccCccccccccccEEEEEEEEEeCCCCcccccCHHHHHHHHHH
Confidence 59999999999999999999998889999999999999999999999999999999999998898889999999999999
Q ss_pred HHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCC-CCceEEEEEEEeecCCCcccCCCCCeEEEEEEeecCccccCCCcce
Q 019986 81 GAERMCMPSPSIDQFIDAVKQTALANKRWVPPP-GKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL 159 (332)
Q Consensus 81 Sa~~l~i~~p~~~~l~~~i~~~~~~~~~~~~~~-~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g~~~~ 159 (332)
||++|+|+.++.++|.+.+.+++++|..|+|+. ..+.+|||+++++.++.+|+.|+..+.++|++.|.++++..+.+++
T Consensus 89 Sa~~L~i~~~~~~~l~~~i~~lv~~n~~~vp~~~~~~~~yiR~~v~~~~~~~g~~p~~~~~~~i~~~p~~~~~~~~~~gv 168 (345)
T 4dqn_A 89 TADRLLMPQVPTDKFIDAAKQVVRANEEYVPPYGTGATLYLRPLLIGVGDVIGVHPADEYIFTIFAMPVGNYFKGGLAPT 168 (345)
T ss_dssp HHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCTTSSCEEEEEEEEEEESCCCSSCCCSEEEEEEEEEEECCSCTTSCCCE
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCCcEEEEEEEEeCCCccCCCCCCCeEEEEEEEECccccccCCCCE
Confidence 999999995599999999999999999888864 2357999999887776788887767888888999887776566789
Q ss_pred EEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEE-ECCEEEcCCCCCCc
Q 019986 160 NLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFIL-KGNIISTPATSGTI 238 (332)
Q Consensus 160 ~l~~~~~~~r~~p~~l~~~Kt~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv-~~~~l~TP~~~~gi 238 (332)
++.+++++.|..|+.++++|+..||+.+++|+++|+++|+||+|++|.+++|+|+|++++|||++ +|++|+||| +.++
T Consensus 169 ~l~~~~~~~R~~~~~~~~~Kt~~nyl~~vla~~eA~~~G~de~l~ld~~~~g~v~E~~~sNif~v~~~g~l~TP~-~~~i 247 (345)
T 4dqn_A 169 NFLIQDDYDRAAPHGTGAAKVGGNYAASLLPGKVAHERQFSDVIYLDPATHTKIEEVGSANFFGITKDNEFITPL-SPSI 247 (345)
T ss_dssp EEEECTTCCSSCTTSSTTSCCHHHHHHHHHHHHHHHHTTCSCEEEECTTTSCBEEEETTEEEEEEETTCEEEECC-CTTS
T ss_pred EEEEccceEecCCCccccccccccCHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEcCCceEEEEecCCEEEeCC-CCCc
Confidence 98887657899998899999944999999999999999999999999732499999999999998 899999999 8999
Q ss_pred ccchHHHHHHHHHHH-CCCcEEEEecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCC--ccHHHHHHHHHHHh
Q 019986 239 LAGITRKSIIEIASD-CGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTG--AQSVSRELYSTLVG 315 (332)
Q Consensus 239 L~GitR~~vl~~~~~-~g~~v~e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g--~g~~~~~L~~~~~~ 315 (332)
|+||||+.||++|++ +|++|+|+.++++||..|||+|+|||+++|+||.+|+..++.+.++++ +||++++|+++|.+
T Consensus 248 L~GitR~~vl~la~~~~g~~v~e~~i~~~el~~adevf~t~t~~~i~PV~~Id~~~~~~~i~~~~~~Gpvt~~L~~~~~~ 327 (345)
T 4dqn_A 248 LPSVTKYSLLYLAEHRFGMKAIEGDVCVDELDKFVEAGACGTAAVISPIGGVQHGDDFHVFYSETEVGPVTHKLYDELTG 327 (345)
T ss_dssp CCCHHHHHHHHHHHHTTCCEEEECCCBTTCGGGEEEEEEEETTTEEEEEEEEEETTEEEESSCSSSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHhhhHHhhhcchhHEEEEEEECcccceeeeCCCCCcCHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999999755555555553 79999999999999
Q ss_pred hhccCCCCCCCCeeeCC
Q 019986 316 IQTGLIKDNKGWTVEIN 332 (332)
Q Consensus 316 ~~~~~~~~~~~~~~~~~ 332 (332)
+++|+.+++.+|+++|+
T Consensus 328 i~~g~~~~~~~W~~~v~ 344 (345)
T 4dqn_A 328 IQFGDVKAPEGWIYKVD 344 (345)
T ss_dssp HHTTSSCCCTTCEEETT
T ss_pred HHcCCCCCCCCCceECC
Confidence 99999999999999986
No 2
>3dth_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Probab=100.00 E-value=2.9e-74 Score=549.92 Aligned_cols=332 Identities=40% Similarity=0.755 Sum_probs=307.5
Q ss_pred CCCCCCCCccccCCceEEEEeccc-eeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHH
Q 019986 1 MDWDNLGFGLTPADYMYTMKCSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQ 79 (332)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~ 79 (332)
.||++||||..|||||+.++|+.+ +|.||+++|.+++.|++.|++|+||||+||||++|++++|++++|++++|++||.
T Consensus 28 ~~~~~l~fg~~~td~m~~~~~~~~~~W~~g~i~p~~~~~i~~~d~gl~yGdgvFEglkay~~~dG~i~lFrl~~H~~RL~ 107 (372)
T 3dth_A 28 SILANPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWADGSIVSFRPEANAARLQ 107 (372)
T ss_dssp HHHHSCCSSSCCCSEEEEEEEETTTEEEEEEEEESCCEEECTTCTHHHHCCEEECCEEEEECTTSCEEEESHHHHHHHHH
T ss_pred cchhccCCCCccCCceEEEEEcCCCeEECCcEeehHhcccCccccHhhcCcEEEEEEEEEECCCCcEeecCHHHHHHHHH
Confidence 389999999999999999999985 9999999999999999999999999999999999988889988999999999999
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCC-CCceEEEEEEEeecCCCcccCCCCCeEEEEEEeecCccccCCCcc
Q 019986 80 TGAERMCMPSPSIDQFIDAVKQTALANKRWVPPP-GKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAP 158 (332)
Q Consensus 80 ~Sa~~l~i~~p~~~~l~~~i~~~~~~~~~~~~~~-~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g~~~ 158 (332)
+||++|+||.++.+.+.+++.+++++|..|+|+. ..+.+|||+++++++..+|+.|+.++.++|.+.|.++++..|.++
T Consensus 108 ~Sa~~L~mp~~~~e~l~~~i~~lv~~n~~~vp~~~~~~~lYiRp~~~~~~~~~G~~p~~~~~~~i~~~p~~~y~~~g~~~ 187 (372)
T 3dth_A 108 SSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKP 187 (372)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHHHHHGGGSCCSSSSCEEEEEEEEEECCCCSSCSCCSEEEEEEEEEEESCSSSCSSSC
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCCcEEEEEEEEcCCCcCCcCCCCCeEEEEEEeeCchhhccCCcc
Confidence 9999999985589999999999999999888875 457899999888776678888877788899999998888777789
Q ss_pred eEEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECC----EEEcCCC
Q 019986 159 LNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN----IISTPAT 234 (332)
Q Consensus 159 ~~l~~~~~~~r~~p~~l~~~Kt~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~----~l~TP~~ 234 (332)
+++.+++++.|..|+.+..+|+..||+.+++++++|+++|+||+|++|..++|+|+|++++|||+++++ +|+|||+
T Consensus 188 v~l~v~~~~~R~~p~g~~~~K~~gNY~~~~la~~eA~~~G~de~l~ld~~~~g~v~E~~~sNif~v~~~~~g~~l~TP~l 267 (372)
T 3dth_A 188 VSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPEL 267 (372)
T ss_dssp EEEEECSSCCSCCTTSSTTSCCHHHHHTTHHHHHHHHHTTCSEEEEECTTTSCBEEEETTEEEEEEESCGGGCEEEECCC
T ss_pred EEEEEccceeccCCCcccchhhHhhhHHHHHHHHHHHHcCCCEEEEEcCCCCCEEEEcCceeEEEEECCCCceEEEECCC
Confidence 999887678899998899999956999999999999999999999999744699999999999999998 9999999
Q ss_pred CCCcccchHHHHHHHHHHHCCCcEEEEecCHhhHhcc------ceeeeecccceeEEeEEEEeCCeEEeeCCC-ccHHHH
Q 019986 235 SGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGSITYRGKRIEFKTG-AQSVSR 307 (332)
Q Consensus 235 ~~giL~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~a------devfl~ns~~gi~pV~~I~~~~~~i~~~~g-~g~~~~ 307 (332)
+.++||||||+.||++|+++|++|+|+.++++||.+| ||+|+|||+.+|.||.+|+..++.+.+++| +||+++
T Consensus 268 ~~~iL~GITR~~vl~la~~~G~~v~Er~i~~~eL~~a~~~g~~dEvf~tgTa~~i~PV~~Id~~~~~~~i~~g~~Gpvt~ 347 (372)
T 3dth_A 268 SGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHHDGEFTIADGQPGEITM 347 (372)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTCEEEECCCBHHHHHHHHHHTSEEEEEEEETTTEEEEEEEEEETTEEEECTTSSCCHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHCCCeEEEEECCHHHHHhhhhcCCccEEEEecccceEEEEEEEccCCceEECCCCCcCHHHH
Confidence 9999999999999999999999999999999999999 999999999999999999765566656777 899999
Q ss_pred HHHHHHHhhhccCCCCCCCCeeeCC
Q 019986 308 ELYSTLVGIQTGLIKDNKGWTVEIN 332 (332)
Q Consensus 308 ~L~~~~~~~~~~~~~~~~~~~~~~~ 332 (332)
+|+++|.++++|+.+|+.+|+++||
T Consensus 348 ~L~~~l~~iq~g~~~d~~~W~~~v~ 372 (372)
T 3dth_A 348 ALRDTLTGIQRGTFADTHGWMARLN 372 (372)
T ss_dssp HHHHHHHHHHHTSSCCTTCCEEECC
T ss_pred HHHHHHHHHHcCCCCCCCCCeEECC
Confidence 9999999999999999999999997
No 3
>3uzo_A Branched-chain-amino-acid aminotransferase; BCAT, amino-acid biosynthesis, branched-CH acid biosynthesis, pyridoxal phosphate, L-GLUT; HET: PLP GLU; 2.00A {Deinococcus radiodurans} PDB: 3uzb_A* 3uyy_A*
Probab=100.00 E-value=2.1e-72 Score=535.79 Aligned_cols=329 Identities=41% Similarity=0.704 Sum_probs=299.5
Q ss_pred CCCCCCCCccccCCceEEEEeccceeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHH
Q 019986 1 MDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQT 80 (332)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~ 80 (332)
+||++||||.+|||||+.++|..+.|+||+++|.+++.|++.|++|+||||+|||||+|++++|++++|++++|++||.+
T Consensus 24 ~~~~~l~fg~~~td~m~~~~~~~~~w~ng~i~p~~~~~i~~~d~gl~yGdgvFE~ir~y~~~dG~i~lfrl~~Hl~RL~~ 103 (358)
T 3uzo_A 24 IDWSTLGFSYIRTDLRYLAHWKDGEWDAGTLTEDNQIHLAEGSTALHYGQQCFEGLKAYRCADGSINLFRPDQNAARMRM 103 (358)
T ss_dssp CCGGGCCSCCCCCSCEEEEEEETTEECCCEEESCCEEEEETTCHHHHSCCEEECCEEEEECTTSCEEECCHHHHHHHHHH
T ss_pred CCcccCCCCCcccCeeEEEEEeCCcEECCEEeEcccceeChHHcceecCcEEEEEEEEEECCCCcEeecCHHHHHHHHHH
Confidence 58999999999999999999998889999999999999999999999999999999999988899999999999999999
Q ss_pred HHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCC-CCceEEEEEEEeecCCCcccCCCCCeEEEEEEeecCccccCCCcce
Q 019986 81 GAERMCMPSPSIDQFIDAVKQTALANKRWVPPP-GKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL 159 (332)
Q Consensus 81 Sa~~l~i~~p~~~~l~~~i~~~~~~~~~~~~~~-~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g~~~~ 159 (332)
||++|+|+.++.++|.+.+.++++++..|+|+. .++.+|||+++++++..+|+.|+..+.+++++.|.+++++.|.+++
T Consensus 104 Sa~~L~ip~~~~e~l~~~i~~lv~~n~~~vp~~~~~~~~yiR~~v~~~~~~~G~~p~~~~~~~i~~~P~~~~~~~g~~~v 183 (358)
T 3uzo_A 104 SCRRLLMPELSDEQFIDACLQVVRANEHFLPPYGTGGSLYLRPFVIGVGDNIGVRTAPEFIFSVFCVPVGPYFKGGLTPT 183 (358)
T ss_dssp HHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCTTSCCEEEEEEEEEEESSCCSSSCCSEEEEEEEEEEECCSSCSSSCCE
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCCceEEEEEEEEecCCccccCCCCCeEEEEEEecChhhhhcCCccE
Confidence 999999995599999999999999999888764 3357999999987777788887767788888999988887778889
Q ss_pred EEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEE-CCE-EEcCCCCCC
Q 019986 160 NLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK-GNI-ISTPATSGT 237 (332)
Q Consensus 160 ~l~~~~~~~r~~p~~l~~~Kt~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~-~~~-l~TP~~~~g 237 (332)
++.+++ +.|..|..++++|+..||+.+++++++|+++|+||+|++|.+++|+|+|++++|||+++ ||+ |+||+ +.+
T Consensus 184 ~l~~~~-~~R~~p~~~~~~K~~~NYl~~vla~~eA~~~G~~e~l~ld~~~~g~V~E~~~sNif~v~~dg~~l~TP~-~~~ 261 (358)
T 3uzo_A 184 NFITSD-YDRAAPHGTGAAKVGGNYAASLLPGYEAKKRDFADVIYLDPATHTTIEEAGAANFFAITQDGQKFVTPQ-SPS 261 (358)
T ss_dssp EEECCS-CCSSCTTSSTTSCBHHHHHHHHHHHHHHHHTTCSEECCBCTTTSCBBCBCSSSEEEEEETTSCEEEEEC-CTT
T ss_pred EEEEEe-eeccCCCccccccchhhhHHHHHHHHHHHHcCCCEEEEEeCCCCCeEEEcCCeeEEEEECCCeEEEECC-cCC
Confidence 988764 88998888899996459999999999999999999999998323999999999999995 788 99999 889
Q ss_pred cccchHHHHHHHHHHH-CCCcEEEEecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCC-C-ccHHHHHHHHHHH
Q 019986 238 ILAGITRKSIIEIASD-CGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKT-G-AQSVSRELYSTLV 314 (332)
Q Consensus 238 iL~GitR~~vl~~~~~-~g~~v~e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~-g-~g~~~~~L~~~~~ 314 (332)
+|+||||+.|+++|++ +|++|+|+.++++||..|||+|+|||+++|+||.+|+..++.+.+++ + +||++++|+++|.
T Consensus 262 iL~GItR~~vl~la~~~~g~~v~e~~i~~~eL~~adEvf~t~t~~~i~PV~~Id~~~~~~~i~~~~~~Gpvt~~L~~~~~ 341 (358)
T 3uzo_A 262 ILPSITKYSLLWLAEHRLGLEVEEGDIRIDELGKFSEAGACGTAAVITPIGGIQHGDDFHVFYSESEPGPVTRRLYDELV 341 (358)
T ss_dssp SCCCHHHHHHHHHHHHTTCCEEEEECCBTTCGGGEEEEEEECTTTSSEEEEEEEETTEEEESSCSSSCCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHhhcCCeEEEEECCHHHHHhhcceeEEcCcceEEEEEEECcccceeEeCCCCCcCHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999999999999999999999975555554543 3 8999999999999
Q ss_pred hhhccCCCCCCCCeeeC
Q 019986 315 GIQTGLIKDNKGWTVEI 331 (332)
Q Consensus 315 ~~~~~~~~~~~~~~~~~ 331 (332)
++++|+.+|+.+|+++|
T Consensus 342 ~iq~g~~~~~~~W~~~v 358 (358)
T 3uzo_A 342 GIQYGDKEAPEGWIVKV 358 (358)
T ss_dssp HHHTTSSCCCTTCCEEC
T ss_pred HHHcCCCCCCCCCceEC
Confidence 99999999999999986
No 4
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A*
Probab=100.00 E-value=2.7e-71 Score=531.58 Aligned_cols=330 Identities=40% Similarity=0.757 Sum_probs=301.7
Q ss_pred CCCCCCccccCCceEEEEeccc-eeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHH
Q 019986 3 WDNLGFGLTPADYMYTMKCSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTG 81 (332)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~S 81 (332)
+.|+|||.+|||||++++|+.. .|.||+++|.+++.|++.|++|+||||+||+||+|++++|++++|++++|++||.+|
T Consensus 30 ~~~~~fg~~~tdhm~~~~~~~~~gW~ng~ivp~~~~~i~p~~~~lhYG~gvFEgiraY~~~dG~i~~Fr~~~h~~Rl~~S 109 (372)
T 3dtg_A 30 LANPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWADGSIVSFRPEANAARLQSS 109 (372)
T ss_dssp HHSCCSSSCCCSEEEEEEEETTTEEEEEEEEESCCEEECTTCTHHHHCCEEECCEEEEECTTSCEEEESHHHHHHHHHHH
T ss_pred hhccCCCCCccceeEEEEECCCCcEeCCEEEEchhceeCcchhhhhccceeeeeEEEEECCCCeEEeeCchHHHHHHhhc
Confidence 3589999999999999999865 999999999999999999999999999999999999889999999999999999999
Q ss_pred HhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCC-ceEEEEEEEeecCCCcccCCCCCeEEEEEEeecCccccCCCcceE
Q 019986 82 AERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK-GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLN 160 (332)
Q Consensus 82 a~~l~i~~p~~~~l~~~i~~~~~~~~~~~~~~~~-~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g~~~~~ 160 (332)
|++|.||.++.+.+.+.+.+++..+..++|+... ..+|||+++++++..+|+.|...+.+++.+.|.++++..+.++..
T Consensus 110 a~~l~iP~~~~e~~~~~~~~l~~~~~~~v~~~~~~~~~YiRp~~~~~~~~lgv~p~~~~~~~ii~~p~~~~~~~~~~~~~ 189 (372)
T 3dtg_A 110 ARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVS 189 (372)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHHHHHGGGSCCSSSSCEEEEEEEEEECCCCCSCSCCSEEEEEEEEEEESCSSTTSSSCEE
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHhhhhccccCCCCceEEEEEEEeecCccCcCCCCCceeeeEecccccccccCcccce
Confidence 9999999878888999999999998888876533 689999999887777899888788888888998887777766666
Q ss_pred EEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEE----ECCEEEcCCCCC
Q 019986 161 LYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFIL----KGNIISTPATSG 236 (332)
Q Consensus 161 l~~~~~~~r~~p~~l~~~Kt~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv----~~~~l~TP~~~~ 236 (332)
+.+..++.|..|......|..+||+.+++++.+|+++|+||+|++|.+++|+|+|++++|||+| ++|+++|||++.
T Consensus 190 ~~~~~~~~R~~p~~~~~~K~~gNY~~~~la~~eA~~~G~deal~Ld~~~~g~V~E~~~sNiF~V~~~~kdg~liTPpl~~ 269 (372)
T 3dtg_A 190 VWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSG 269 (372)
T ss_dssp EEECSSCCSCCTTSSTTSCCHHHHHHHHHHHHHHHHTTCSEEEEECTTTSCBEEEETTEEEEEEESCGGGCEEEECCCCS
T ss_pred eecccceeecCcCCcchHHhcCCcchhhhHHHHHHhcCcchhhhhccccccceeecCceEEEEEEecCCCceEEeCCccc
Confidence 6666677898888777788878999999999999999999999999644789999999999999 678999999999
Q ss_pred CcccchHHHHHHHHHHHCCCcEEEEecCHhhHhcc------ceeeeecccceeEEeEEEEeCCeEEeeCCC-ccHHHHHH
Q 019986 237 TILAGITRKSIIEIASDCGFQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGSITYRGKRIEFKTG-AQSVSREL 309 (332)
Q Consensus 237 giL~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~a------devfl~ns~~gi~pV~~I~~~~~~i~~~~g-~g~~~~~L 309 (332)
+||+||||+.||++|+++|++|+|+.++++||.+| ||||+|||+.+|.||.+|+..+..+.+++| +||+|++|
T Consensus 270 ~iL~GITR~sVi~LA~~~Gi~V~Er~it~~El~~A~~~~~~dEvF~tGTaa~I~PV~~Id~~~~~~~ig~G~~Gpvt~~L 349 (372)
T 3dtg_A 270 SLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHHDGEFTIADGQPGEITMAL 349 (372)
T ss_dssp SSCCCHHHHHHHHHHHHHTCEEEECCCBHHHHHHHHHHTSEEEEEEEETTTEEEEEEEEEETTEEEECTTSSCCHHHHHH
T ss_pred cccccHHHHHHHHHHHHCCceEEEEeCCHHHHHHHhhcCCCcEEEECCCcceEEEEEEEecCCceEEcCCCCcCHHHHHH
Confidence 99999999999999999999999999999999998 999999999999999999876766666888 89999999
Q ss_pred HHHHHhhhccCCCCCCCCeeeCC
Q 019986 310 YSTLVGIQTGLIKDNKGWTVEIN 332 (332)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~ 332 (332)
+++|.++|+|+++|+.+|+++||
T Consensus 350 ~~~~~~iq~G~~~d~~~W~~~v~ 372 (372)
T 3dtg_A 350 RDTLTGIQRGTFADTHGWMARLN 372 (372)
T ss_dssp HHHHHHHHTTSSCCTTCCEEECC
T ss_pred HHHHHHHHCCCCCCCCCCcEeCC
Confidence 99999999999999999999997
No 5
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A*
Probab=100.00 E-value=3.6e-69 Score=516.09 Aligned_cols=326 Identities=34% Similarity=0.605 Sum_probs=294.0
Q ss_pred CC-CCCCCccccCCceEEEEeccceeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHH
Q 019986 2 DW-DNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQT 80 (332)
Q Consensus 2 ~~-~~~~~~~~~~~~~~~~~~~~~~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~ 80 (332)
|| ++||||.+|||||..++|+..+|+||+++|.+++.+++.|++|+||||+|||||+|++++|++++|++++|++||.+
T Consensus 23 ~~~~~l~fg~~~~d~m~~~~~~~~~w~ng~~~p~~~~~i~~~d~~l~yG~gvFEt~r~y~g~dG~i~~f~l~~Hl~RL~~ 102 (365)
T 2a1h_A 23 GPGEPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLR 102 (365)
T ss_dssp CTTSCCCTTCSCCSEEEEEEEETTEECCCEEEESCCEEECTTBHHHHSCCEEECCEEEEECTTSCEEEESHHHHHHHHHH
T ss_pred ccccccCcCCccccceeeeecccCeEECCEEeEcccceeCccchhhhcCceeEeEEEEEecCCCceeecCHHHHHHHHHH
Confidence 57 99999999999999988866889999999999999999999999999999999999888898889999999999999
Q ss_pred HHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCceEEEEEEEeecCCCcccCCCCCeEEEEEEeecCccccCC-Ccce
Q 019986 81 GAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPL 159 (332)
Q Consensus 81 Sa~~l~i~~p~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g-~~~~ 159 (332)
||++|+|+.++.+++.+.+.++++.+..|+|......+|||++++++++.+|+.++.++.++|.+.|+++++..+ .+++
T Consensus 103 Sa~~l~~~~~~~~~l~~~i~~lv~~~~~~~p~~~g~~~yiR~~~~~~~~~~g~~p~~~~~~~i~~~p~~~~~~~g~~~~v 182 (365)
T 2a1h_A 103 SAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPV 182 (365)
T ss_dssp HHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCSTTCEEEEEEEEEECCBCCSCSCCSEEEEEEEEEEECCSSSSSSCCCE
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCCCCCCCcEEEEEEEECccccccccccce
Confidence 999999994489999999999999988777653334789999888766678888777788899999998877666 6788
Q ss_pred EEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEE-ccCCCCeEEEeCceeEEEEE---CCE--EEcCC
Q 019986 160 NLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYL-DSVNKKNLEEVSSCNIFILK---GNI--ISTPA 233 (332)
Q Consensus 160 ~l~~~~~~~r~~p~~l~~~Kt~~~y~~~~~a~~~a~~~g~de~lll-n~~~~G~v~E~s~sNifiv~---~~~--l~TP~ 233 (332)
++.+.+.+.|..|+.+.++|+..||+.+++++++|+++|+||+|++ |+ +|+|+|++++|||+++ ||+ |+|||
T Consensus 183 ~l~~~~~~~R~~~~~~~~~Kt~~ny~~~~la~~eA~~~G~de~L~l~d~--~G~V~E~~~sNif~v~~~~dg~~~l~TP~ 260 (365)
T 2a1h_A 183 SLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGP--DHQLTEVGTMNIFVYWTHEDGVLELVTPP 260 (365)
T ss_dssp EEEECTTCCSCCTTSSTTSCBGGGTTTHHHHHHHHHHTTCSEEEEEETT--TTEEEEETTEEEEEEEECTTSCEEEEECC
T ss_pred EEEEccccccCCCCccchhchhhccHHHHHHHHHHHHcCCCeEEEEECC--CCeEEEcCceEEEEEEecCCCcEEEEeCC
Confidence 8888765678888888999984599999999999999999999999 76 7999999999999996 675 99999
Q ss_pred CCCCcccchHHHHHHHHHHHC-CCcEEEEecCHhhHhcc------ceeeeecccceeEEeEEEEeCCeEEeeC-CC-ccH
Q 019986 234 TSGTILAGITRKSIIEIASDC-GFQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGSITYRGKRIEFK-TG-AQS 304 (332)
Q Consensus 234 ~~~giL~GitR~~vl~~~~~~-g~~v~e~~i~~~dL~~a------devfl~ns~~gi~pV~~I~~~~~~i~~~-~g-~g~ 304 (332)
++.++||||||+.||++|+++ |++|+|+.++++||..| ||+|+|||+++|+||.+|+++++.+.++ +| +||
T Consensus 261 l~~~iL~GITR~~vl~la~~~~G~~v~Er~i~~~eL~~A~~~g~~dEvf~tnt~~~i~PV~~i~~~~~~~~~~~~g~~g~ 340 (365)
T 2a1h_A 261 LNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIPTMENGPE 340 (365)
T ss_dssp CSSSSCCCHHHHHHHHHHHHHTSSEEEECCCBHHHHHHHHHTTCEEEEEEEETTTEEEEEEEEEETTEEEECTTGGGTTH
T ss_pred CCCCccccHHHHHHHHHHHhcCCCceEEEeCCHHHHHHHHhcCCccEEEEcCCeeEEEEEEEEEeCCeEEeeCCCCCcCH
Confidence 999999999999999999994 99999999999999999 9999999999999999997668887554 34 799
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeeC
Q 019986 305 VSRELYSTLVGIQTGLIKDNKGWTVEI 331 (332)
Q Consensus 305 ~~~~L~~~~~~~~~~~~~~~~~~~~~~ 331 (332)
++++|+++|.++++|+++ .+|+++|
T Consensus 341 vt~~L~~~~~~~~~g~~~--~~W~~~v 365 (365)
T 2a1h_A 341 LILRFQKELKEIQYGIRA--HEWMFPV 365 (365)
T ss_dssp HHHHHHHHHHHHHTTSSC--CTTEEEC
T ss_pred HHHHHHHHHHHHHcCCCC--CCCeeeC
Confidence 999999999999999987 8999987
No 6
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A*
Probab=100.00 E-value=3.5e-69 Score=518.64 Aligned_cols=328 Identities=34% Similarity=0.613 Sum_probs=293.7
Q ss_pred CCCCCCCCccccCCceEEEEeccc-eeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHH
Q 019986 1 MDWDNLGFGLTPADYMYTMKCSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQ 79 (332)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~ 79 (332)
.||++||||.+|||||..++|+.+ +|+||+++|.+++.+++.|++|+||+|+|||||+|++++|++++|++++|++||.
T Consensus 42 ~~~~~~~fg~~~td~m~~~~~~~~~~w~ng~~~p~~~~~i~~~d~~l~yG~gvFEg~k~y~g~dg~i~~frld~H~~RL~ 121 (386)
T 2coi_A 42 PDPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRMY 121 (386)
T ss_dssp CCCC-CCTTCCCCSEEEEEEEETTTEECCCEEEECCCEEECTTCHHHHSCCEEECCEEEEECTTSCEEEESHHHHHHHHH
T ss_pred CCccccCCccccccceEEEEeCCCcEEECCEEeecccCccCcccchhhcCceeEEEEEEEeCCCCceeecCHHHHHHHHH
Confidence 489999999999999999999887 8999999999999999999999999999999999998889888999999999999
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCceEEEEEEEeecCCCcccCCCCCeEEEEEEeecCccccCC-Ccc
Q 019986 80 TGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAP 158 (332)
Q Consensus 80 ~Sa~~l~i~~p~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g-~~~ 158 (332)
+||++|+|+.++.+++.+.+.++++.+..|+|+..++.+|||+++.+.+..+|+.|+.++.++|.+.|.++++..+ .++
T Consensus 122 ~Sa~~l~~p~~~~e~~~~~i~~lv~~~~~~vp~~~g~~~yiR~~~~~~~~~~g~~p~~~~~~~i~~~p~~~y~~~~~~~~ 201 (386)
T 2coi_A 122 RSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNP 201 (386)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCSSSSCEEEEEEEEEECCCSCSCSCCSEEEEEEEEEEECCCC-----CC
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhccccCCCCCCccEEEEEEEEecCCccccCCCCCcEEEEEEEECccccccccccc
Confidence 9999999995489999999999999998777754446899999988776678888877888899999998877666 678
Q ss_pred eEEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEc-cCCCCeEEEeCceeEEEEE---CC--EEEcC
Q 019986 159 LNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLD-SVNKKNLEEVSSCNIFILK---GN--IISTP 232 (332)
Q Consensus 159 ~~l~~~~~~~r~~p~~l~~~Kt~~~y~~~~~a~~~a~~~g~de~llln-~~~~G~v~E~s~sNifiv~---~~--~l~TP 232 (332)
+++.+.+.+.|..|..+..+|+..||+.+++++++|+++|+||+|++| . +|+|+|++++|||+++ || +|+||
T Consensus 202 v~l~~~~~~~r~~p~~~g~~K~~~Ny~~~~la~~eA~~~G~de~L~ld~~--~g~V~E~~~sNiF~v~~~~~g~~~l~TP 279 (386)
T 2coi_A 202 VSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGE--DHQITEVGTMNLFLYWINEDGEEELATP 279 (386)
T ss_dssp EEEEECTTCCSCCTTSSTTSCCTHHHHTTHHHHHHHHTTTCSEEEEEETT--TTEEEEETTEEEEEEEECTTSCEEEEEC
T ss_pred EEEEEcccccccCCCcccccccccChHHHHHHHHHHHHcCCCEEEEEECC--CCEEEEeCCceEEEEEEcCCCCEEEEEC
Confidence 888887656687787778999855999999999999999999999999 5 7999999999999997 88 99999
Q ss_pred CCCCCcccchHHHHHHHHHHH-CCCcEEEEecCHhhHhcc------ceeeeecccceeEEeEEEEeCCeEEeeC-CC-cc
Q 019986 233 ATSGTILAGITRKSIIEIASD-CGFQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGSITYRGKRIEFK-TG-AQ 303 (332)
Q Consensus 233 ~~~~giL~GitR~~vl~~~~~-~g~~v~e~~i~~~dL~~a------devfl~ns~~gi~pV~~I~~~~~~i~~~-~g-~g 303 (332)
|++.++||||||+.||++|++ +|++|+|+.++++||..| ||+|+|||+++|.||.+|++.++.+.++ +| +|
T Consensus 280 ~l~~~iL~GITR~~vl~la~~~~G~~V~Er~i~~~eL~~A~~~g~~dEvF~tgTa~~i~PV~~I~~~~~~~~~~~~g~~g 359 (386)
T 2coi_A 280 PLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGP 359 (386)
T ss_dssp CCSSSSCCCHHHHHHHHHHHHHCSSEEEECCCBHHHHHHHHTTTCEEEEEEEETTTEEEEEEEEEESSSEEECGGGGGTT
T ss_pred CCCCCccHHHHHHHHHHHHHhccCCcEEEEECCHHHHHHHHhcCCccEEEEecceeEEEEEEEEeeCCeEEecCCCCCcC
Confidence 999999999999999999999 899999999999999999 9999999999999999997668888553 34 79
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCeeeCC
Q 019986 304 SVSRELYSTLVGIQTGLIKDNKGWTVEIN 332 (332)
Q Consensus 304 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 332 (332)
|++++|+++|.++++|+++ .+|+++|+
T Consensus 360 ~vt~~L~~~l~~iq~g~~~--~~W~~~v~ 386 (386)
T 2coi_A 360 KLASRILSKLTDIQYGREE--RDWTIVLS 386 (386)
T ss_dssp HHHHHHHHHHHHHHTTSSC--CTTEEEC-
T ss_pred HHHHHHHHHHHHHhCCCCC--CCCeEeCC
Confidence 9999999999999999987 58999985
No 7
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei}
Probab=100.00 E-value=2.3e-64 Score=475.91 Aligned_cols=302 Identities=27% Similarity=0.442 Sum_probs=263.7
Q ss_pred ceEEEEeccceeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCC-CHH
Q 019986 15 YMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SID 93 (332)
Q Consensus 15 ~~~~~~~~~~~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p-~~~ 93 (332)
-|.+.+.+..+|+||+++|.+++.|++.|++|+||||+|||+|++++++|++++|+|++|++||.+||+.|+|+.| +.+
T Consensus 21 ~m~~~~~~~~~w~nG~~vp~~~~~i~~~drg~~yGdgvFEtir~~~~~dG~~~~f~l~~Hl~RL~~Sa~~l~i~~p~~~~ 100 (328)
T 3u0g_A 21 SMSMADRDGKIWMDGKLIEWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVPFDQE 100 (328)
T ss_dssp -CCTTSCCSEEEETTEEEEGGGCEEESSCHHHHHCCEEECCEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCSSCHH
T ss_pred cceeccCCCEEEECCEEeehHhCccCccchHHhcCceEEEEEEEEECCCCCeeeCCHHHHHHHHHHHHHHHCCCCCCCHH
Confidence 3443333334999999999999999999999999999999999997666856689999999999999999999987 999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCceEEEEEEEeecCCCcccCCC-CCeEEEEEEeecCccccCC--CcceEEEeecccccc
Q 019986 94 QFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA-PEYTFLVFASPVGNYFKEG--LAPLNLYVEDEFHRA 170 (332)
Q Consensus 94 ~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~-~~~~~~i~~~p~~~~~~~g--~~~~~l~~~~~~~r~ 170 (332)
++++.+.+++++++. .++|||++++++.+.+|+.|. ..+.++|.+.|.++++... .+++++.++ ++.|.
T Consensus 101 ~l~~~i~~lv~~n~~-------~~~~iR~~vtrg~~~~g~~p~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~-~~~R~ 172 (328)
T 3u0g_A 101 TLEAAQRDVVRENKL-------ESCYLRPIIWIGSEKLGVSAKGNTIHVAIAAWPWGAYLGEEGLAKGIRVKTS-SFTRH 172 (328)
T ss_dssp HHHHHHHHHHHHTTC-------SSEEEEEEEEECSSCCSTTCCCCCEEEEEEEEECC----HHHHHHCEEEEEC-SSCCC
T ss_pred HHHHHHHHHHHhcCC-------CCeEEEEEEEecCCCCCcCCCCCCcEEEEEEEEcCCCCChhhhcCCEEEEEe-eeeec
Confidence 999999999998863 578999988755555777654 3567888888887654321 246788775 57788
Q ss_pred CCCC-CCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHH
Q 019986 171 TPGG-AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIE 249 (332)
Q Consensus 171 ~p~~-l~~~Kt~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~ 249 (332)
.|+. ++++|++.||+.+++++++|+++|+||+|++|+ +|+|+|++++|||+++|++|+|||++. +|+||||+.|++
T Consensus 173 ~~~~~~~~~K~t~nyl~~vla~~eA~~~G~~e~l~ld~--~g~v~E~~~sNif~v~~g~l~TP~~~~-iL~GitR~~vl~ 249 (328)
T 3u0g_A 173 HVNVSMVRAKASGWYVNSILANQEATADGYDEALLLDV--DGYVSEGSGENFFLVNRGKLYTPDLAS-CLDGITRDTVIT 249 (328)
T ss_dssp CTTTSCTTSCBGGGHHHHHHHHHHHHHTTCSEEEEECT--TSCEEEESSSEEEEEETTEEEECCSSS-SCCCHHHHHHHH
T ss_pred CCCCcccchhhhhhhHHHHHHHHHHHHCCCCEEEEECC--CCcEEEcCceeEEEEECCEEEeCCccc-cchHHHHHHHHH
Confidence 8776 799994359999999999999999999999998 799999999999999999999999987 999999999999
Q ss_pred HHHHCCCcEEEEecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCC-ccHHHHHHHHHHHhhhccCCCCCCCCe
Q 019986 250 IASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTG-AQSVSRELYSTLVGIQTGLIKDNKGWT 328 (332)
Q Consensus 250 ~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g-~g~~~~~L~~~~~~~~~~~~~~~~~~~ 328 (332)
+|+++|++|+|+.++++||.+|||+|+|||++||+||.+| |++.+ ++| +||++++|+++|.++++|+.+|+.+|+
T Consensus 250 ~a~~~g~~v~e~~i~~~eL~~adevf~tns~~~v~PV~~I--d~~~~--~~g~~g~vt~~L~~~~~~~~~g~~~~~~~W~ 325 (328)
T 3u0g_A 250 LAKEAGIEVIEKRITRDEVYTADEAFFTGTAAEVTPIREL--DNRTI--GGGARGPITEKLQSAFFDVVNGKSAKHADWL 325 (328)
T ss_dssp HHHHTTCCEEECCCCHHHHHTCSEEEEEETTTEEEEEEEE--TTEEC--TTSSCCHHHHHHHHHHHHHHTTCCSTTGGGE
T ss_pred HHHHcCCeEEEEeCCHHHHhhCCEEEEEcchhhEEEEEEE--CCEEC--CCCCCCHHHHHHHHHHHHHHcCCCCCCCCCc
Confidence 9999999999999999999999999999999999999999 78876 777 899999999999999999999999999
Q ss_pred eeC
Q 019986 329 VEI 331 (332)
Q Consensus 329 ~~~ 331 (332)
++|
T Consensus 326 ~~v 328 (328)
T 3u0g_A 326 TKI 328 (328)
T ss_dssp EEC
T ss_pred eeC
Confidence 987
No 8
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Probab=100.00 E-value=7.6e-62 Score=456.33 Aligned_cols=292 Identities=31% Similarity=0.424 Sum_probs=256.1
Q ss_pred eeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHH
Q 019986 25 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 103 (332)
Q Consensus 25 ~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p-~~~~l~~~i~~~~ 103 (332)
+|+||+++|.+++.+++.|++|+||||+|||||+++|.+|. ++|+|++|++||.+||+.|+|+.| +.+++++.+.+++
T Consensus 8 ~~~nG~~~~~~~~~i~~~d~g~~yG~gvFEtir~~~g~~g~-~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~ 86 (308)
T 2eiy_A 8 IWMNGAFVPQEEAKTSVLSHALHYGTSVFEGIRAYETAKGP-AIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVV 86 (308)
T ss_dssp EEETTEEECGGGCCCCTTCHHHHHCCEEECCEEEECCTTSC-EEETHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHH
T ss_pred EEECCEEeEhHHCccCccchHhhhcceEEEEEEEECCCCcc-cccCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999665554 488999999999999999999977 8999999999999
Q ss_pred HHcCCCCCCCCCceEEEEEEEeecCCCcccCCC--CCeEEEEEEeecCccccCC--CcceEEEeeccccccCCCC-CCCc
Q 019986 104 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEG--LAPLNLYVEDEFHRATPGG-AGGV 178 (332)
Q Consensus 104 ~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~~~g--~~~~~l~~~~~~~r~~p~~-l~~~ 178 (332)
++++. +.+|||++++++++.+++.|. ..+.+++...|++.++..+ .+++++.+. ++.|..++. ++++
T Consensus 87 ~~~~~-------~~~~iR~~v~~g~~~~~~~p~~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~ 158 (308)
T 2eiy_A 87 RRNGY-------RSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGARLITS-SWARFPANVMPGKA 158 (308)
T ss_dssp HHTTC-------SSEEEEEEEECCSSCCSSCCGGGCSCEEEEEEEEC--------CCSCEEEEEC-SSCBCCTTTSCTTS
T ss_pred HhCCC-------CcEEEEEEEEecCCccCcCCCCCCCeEEEEEEEEcCccCCcccccCCeEEEEe-cceecCCCCcCcce
Confidence 98762 468999988755555677653 4677888888887654322 356888775 467777754 6899
Q ss_pred ccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHHHHCCCcE
Q 019986 179 KAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQV 258 (332)
Q Consensus 179 Kt~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v 258 (332)
|+.+||+.+++++++|+++|+||+|++|+ +|+|+|++++|||+++||+|+|||++. +|+||||+.|+++|+++|++|
T Consensus 159 Kt~~ny~~~~la~~~A~~~G~de~l~ld~--~G~V~Egs~sNif~v~~g~l~TP~~~~-iL~GitR~~ll~~a~~~g~~v 235 (308)
T 2eiy_A 159 KVGGNYVNSALAKMEAVAAGADEALLLDE--EGYVAEGSGENLFFVRDGVIYALEHSV-NLEGITRDSVIRIAKDLGYEV 235 (308)
T ss_dssp CBGGGHHHHHHHHHHHHHTTCSEEEEEBT--TSSEEEESSCEEEEEETTEEEEECCTT-SCCCHHHHHHHHHHHHTTCCE
T ss_pred ehhhhHHHHHHHHHHHHHcCCCEEEEECC--CCeEEEcCceEEEEEECCEEEeCCcCC-CCchHHHHHHHHHHHHCCCeE
Confidence 99866999999999999999999999998 799999999999999999999999988 999999999999999999999
Q ss_pred EEEecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCC-ccHHHHHHHHHHHhhhccCCCCCCCCeeeCC
Q 019986 259 EERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTG-AQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 332 (332)
Q Consensus 259 ~e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g-~g~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 332 (332)
+|+.++++||..|||+|+|||++||+||.+| +++.+ +.| +||++++|+++|.++++|+.+++.+|+++|.
T Consensus 236 ~E~~i~~~dL~~adevfltns~~gv~pV~~i--d~~~~--~~g~~g~~~~~l~~~~~~~~~~~~~~~~~w~~~v~ 306 (308)
T 2eiy_A 236 QVVRATRDQLYMADEVFMTGTAAEVTPVSMI--DWRPI--GKGTAGPVALRLREVYLEAVTGRRPEYEGWLTYVN 306 (308)
T ss_dssp EEECCCHHHHHTCSEEEEEETTTEEEEEEEE--TTEEC--TTSSCCHHHHHHHHHHHHHHTTCCGGGGGGEEECC
T ss_pred EEEeCCHHHHhhCCEEEEccCcceEEEEEEE--cCEEC--CCCCCCHHHHHHHHHHHHHHcCCCCCccCCCeeCC
Confidence 9999999999999999999999999999999 68876 666 7999999999999999999999999999984
No 9
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Probab=100.00 E-value=1.9e-61 Score=453.88 Aligned_cols=292 Identities=30% Similarity=0.524 Sum_probs=259.9
Q ss_pred eeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCC-eEeecChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHH
Q 019986 25 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDG-QLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQT 102 (332)
Q Consensus 25 ~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G-~~~~f~l~~Hl~RL~~Sa~~l~i~~p-~~~~l~~~i~~~ 102 (332)
+|+||+++|.+++.+++.|++|+||||+|||||++++.+| + +|+|++|++||.+||+.|+|+.| +.+++.+.+.++
T Consensus 9 ~~~ng~~~~~~~~~i~~~d~g~~yG~gvFEtir~~~~~~G~~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~ 86 (309)
T 1iye_A 9 IWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPV--VFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDV 86 (309)
T ss_dssp EEETTEEEEGGGCCCCTTCHHHHHCCEEECCEEEECCTTSSE--EETHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHH
T ss_pred EEECCEEEEhHHcccCccchHHhccceeEEEEEEEECCCCcE--EcCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 8999999999999999999999999999999999965567 5 78899999999999999999976 899999999999
Q ss_pred HHHcCCCCCCCCCceEEEEEEEeecCCCcccCCC--CCeEEEEEEeecCccccCC--CcceEEEeeccccccCCCC-CCC
Q 019986 103 ALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEG--LAPLNLYVEDEFHRATPGG-AGG 177 (332)
Q Consensus 103 ~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~~~g--~~~~~l~~~~~~~r~~p~~-l~~ 177 (332)
+++++. +.+|||++++++...+|+.|. ..+.+++...|+++++..+ .+++++.+. ++.|..++. +++
T Consensus 87 ~~~~~~-------~~~~iR~~v~~g~~~~g~~p~~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~ 158 (309)
T 1iye_A 87 IRKNNL-------TSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVS-SWNRAAPNTIPTA 158 (309)
T ss_dssp HHHTTC-------SSEEEEEEEEECSSCSSSSCCTTCCEEEEEEEECCCCTTCTTHHHHCEEEEEC-SSCCCCTTTSCTT
T ss_pred HHhcCC-------CCEEEEEEEEeCCCccCCCCCCCCCcEEEEEEEEcCccCCcccccCCeEEEEe-eeeccCCCCCCcc
Confidence 998762 578999988765556677653 3677888888877654332 246778775 467877765 589
Q ss_pred cccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHHHHCCCc
Q 019986 178 VKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQ 257 (332)
Q Consensus 178 ~Kt~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~ 257 (332)
+|++.||+.+++++++|+++|+||+|++|+ +|+|+|++++|||+++||+|+|||++.++|+||||+.|+++|+++|++
T Consensus 159 ~K~~~ny~~~~la~~~A~~~G~de~l~ld~--~G~V~Egs~sNif~v~~g~l~TP~l~~~iL~GitR~~ll~~a~~~g~~ 236 (309)
T 1iye_A 159 AKAGGNYLSSLLVGSEARRHGYQEGIALDV--NGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIE 236 (309)
T ss_dssp SCBGGGHHHHHHHHHHHHHTTCSEEEEECT--TSBEEEETTBEEEEEETTEEEECCGGGTCCCCHHHHHHHHHHHHTTCC
T ss_pred ccchhhhHHHHHHHHHHHHcCCCEEEEECC--CCcEEEcCceEEEEEECCEEECCCCCCCCCCCHHHHHHHHHHHHcCCe
Confidence 998559999999999999999999999998 799999999999999999999999999999999999999999999999
Q ss_pred EEEEecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCC-ccHHHHHHHHHHHhhhccCCCCCCCCeeeCC
Q 019986 258 VEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTG-AQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 332 (332)
Q Consensus 258 v~e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g-~g~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 332 (332)
|+|+.++++||..|||+|+|||++||+||.+| +++.+ +.| +||++++|+++|.++++|+.+++.+|+++|.
T Consensus 237 v~E~~i~~~eL~~adevfltns~~gv~PV~~i--d~~~~--~~g~~g~~~~~l~~~~~~~~~g~~~~~~~w~~~v~ 308 (309)
T 1iye_A 237 VREQVLSRESLYLADEVFMSGTAAEITPVRSV--DGIQV--GEGRCGPVTKRIQQAFFGLFTGETEDKWGWLDQVN 308 (309)
T ss_dssp EEECCCBTTHHHHCSEEEEEETTTEEEEEEEE--TTEEC--TTSSCCHHHHHHHHHHHGGGTTSSCCCSCCEEECC
T ss_pred EEEEeCCHHHHhhCcEEEEccCCCEEEEEEEE--CCEEC--CCCCCCHHHHHHHHHHHHHHcCCCCccCCCCeECC
Confidence 99999999999999999999999999999999 78876 666 7999999999999999999999999999983
No 10
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A*
Probab=100.00 E-value=1.4e-57 Score=421.07 Aligned_cols=267 Identities=22% Similarity=0.337 Sum_probs=230.2
Q ss_pred eeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHH
Q 019986 25 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 103 (332)
Q Consensus 25 ~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p-~~~~l~~~i~~~~ 103 (332)
+|+||+++|.+++.|++.|++|+||||+|||||++ +|+ +|+|++|++||.+||+.|+|+.| +.+++++.+.+++
T Consensus 3 ~~~nG~~~~~~~~~i~~~d~g~~yGdgvFEtir~~---~g~--~f~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~li 77 (277)
T 3daa_A 3 TLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVY---NGE--MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELV 77 (277)
T ss_dssp EEETTEEEEGGGCCBCTTBHHHHTCCEEEEEEEEE---TTE--ETTHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHH
T ss_pred EEECCEEeEhHHCeechhhhHHhcccEEEEEEEEE---CCE--EcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999 676 88999999999999999999987 8999999999999
Q ss_pred HHcCCCCCCCCCceEEEEEEEe-ecCCCcccC-C--CCCeEEEEEEeecCccccCCCcceEEEeeccccccCCCCCCCcc
Q 019986 104 LANKRWVPPPGKGSLYIRPLLV-GSGPILGLA-P--APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVK 179 (332)
Q Consensus 104 ~~~~~~~~~~~~~~~~ir~~~~-g~~~~~g~~-~--~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~~l~~~K 179 (332)
++++. .++++|+.++ |.+. .++. | +..+.+++++.|++.+.....+++++.+.+. .| +.++++|
T Consensus 78 ~~n~~-------~~~~lri~vtrG~~~-r~~~~p~~~~~~~~~i~~~p~~~~~~~~~~gv~~~~~~~-~r---~~~~~~K 145 (277)
T 3daa_A 78 EKNEL-------NTGHIYFQVTRGTSP-RAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFVED-IR---WLRCDIK 145 (277)
T ss_dssp HHHTC-------CSEEEEEEEESCBCS-CCSSCCSSCCCCEEEEEEEECCCCHHHHHHCEEEEEEEC-CC---CSCTTSC
T ss_pred HhcCC-------CcEEEEEEEEecCCC-cCCCCCCCCCCcEEEEEEEECCCChHHHhCCeEEEEecC-cc---ccCCCcc
Confidence 98873 3445665554 5443 3433 2 3567888889998743211123566665432 22 3468999
Q ss_pred cccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHHHHCCCcEE
Q 019986 180 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVE 259 (332)
Q Consensus 180 t~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~ 259 (332)
|. ||+.+++++++|+++|+||+|++| +|+|+|++++|||+++|++|+|||++.++|+||||+.|+++|+++|++|+
T Consensus 146 t~-nyl~~~la~~eA~~~g~~e~l~l~---~g~v~E~~~sNif~~~~~~l~TP~~~~~iL~GitR~~vl~~~~~~g~~v~ 221 (277)
T 3daa_A 146 SL-NLLGAVLAKQEAHEKGCYEAILHR---NNTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVK 221 (277)
T ss_dssp BS-CCHHHHHHHHHHHHTTCSEEEEEE---TTEEEEETTBEEEEEETTEEEECCSSTTSCCCHHHHHHHHHHHHTTCCEE
T ss_pred hh-hhHHHHHHHHHHHHCCCCEEEEEc---CCEEEEcCceEEEEEECCEEECCCCcCCCCccHHHHHHHHHHHHcCCeEE
Confidence 96 999999999999999999999996 59999999999999999999999999999999999999999999999999
Q ss_pred EEecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCC-ccHHHHHHHHHHHhh
Q 019986 260 ERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTG-AQSVSRELYSTLVGI 316 (332)
Q Consensus 260 e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g-~g~~~~~L~~~~~~~ 316 (332)
|+.++++||..|||+|+|||++||+||.+| |++.+ ++| +||++++|+++|.+.
T Consensus 222 e~~i~~~el~~adevf~~ns~~~i~pV~~i--d~~~~--~~g~~g~~t~~L~~~~~~~ 275 (277)
T 3daa_A 222 EIPFTTHEALKMDELFVTSTTSEITPVIEI--DGKLI--RDGKVGEWTRKLQKQFETK 275 (277)
T ss_dssp CCCCBHHHHHTCSEEEEEETTTEEEEEEEE--TTEES--TTSSCCHHHHHHHHHHHTT
T ss_pred EEeCCHHHHHhcCeeeeecChhhEEEEEEE--CCEEC--CCCCcCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999 78876 667 899999999999865
No 11
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A*
Probab=100.00 E-value=9.7e-56 Score=407.31 Aligned_cols=262 Identities=19% Similarity=0.247 Sum_probs=228.4
Q ss_pred eeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHH
Q 019986 25 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTAL 104 (332)
Q Consensus 25 ~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p~~~~l~~~i~~~~~ 104 (332)
+|+||+ .++.+++.|++|+||||+|||||++ +|+ +|+|++|++||.+||+.|+++.|+.+++++.+.++++
T Consensus 2 ~~~nG~----~~~~i~~~d~g~~yG~gvfEtir~~---~G~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~~~~ 72 (269)
T 1i2k_A 2 FLINGH----KQESLAVSDRATQFGDGCFTTARVI---DGK--VSLLSAHIQRLQDACQRLMISCDFWPQLEQEMKTLAA 72 (269)
T ss_dssp EEETTE----EESCCCTTCHHHHHCCEEEEEEEEE---TTE--ETTHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred EEECCC----cCCccCccccccccceeEEEEEEEE---CCE--EecHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 689999 3577999999999999999999999 676 7889999999999999999998788999999999998
Q ss_pred HcCCCCCCCCCceEEEEEEEeecCCCcccCCC--CCeEEEEEEeecCccccC-CCcceEEEeeccccccCCCCCCCcccc
Q 019986 105 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKE-GLAPLNLYVEDEFHRATPGGAGGVKAI 181 (332)
Q Consensus 105 ~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~~~-g~~~~~l~~~~~~~r~~p~~l~~~Kt~ 181 (332)
.+. ++++|+.++++.+..|+.|+ ..+.+++.+.|+++++.. ..+++++.+. +.+|..+..++++|+.
T Consensus 73 ~~~---------~~~iR~~v~~g~~~~g~~p~~~~~~~~~i~~~p~~~~~~~~~~~g~~l~~~-~~~~~~~~~~~~~Kt~ 142 (269)
T 1i2k_A 73 EQQ---------NGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALS-PVRLGRNPHLAGIKHL 142 (269)
T ss_dssp HHC---------SEEEEEEEECCSCCSTTCCTTCCCCEEEEEEECCCSHHHHHHHHCEEEEEC-SCCBCCCTTTTBCCBS
T ss_pred hCC---------CeEEEEEEEcCCCCCCCCCccCCCcEEEEEEEECCCcchhhhcCCeEEEEe-ceecCCCCcccCcchh
Confidence 642 46888877654445667654 467788889998764321 1246777765 4566655678999996
Q ss_pred cChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHHHHCCCcEEEE
Q 019986 182 SNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEER 261 (332)
Q Consensus 182 ~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e~ 261 (332)
||+.+++++++|+++|+||+|++|+ +|+|+|++++|||+++||+|+|||++.|+|+||||+.|+++|+++|++|+|+
T Consensus 143 -n~~~~~~a~~~A~~~G~de~l~ld~--~G~v~E~s~sNif~v~~g~l~TP~~~~~iL~GitR~~ll~~a~~~g~~v~e~ 219 (269)
T 1i2k_A 143 -NRLEQVLIRSHLEQTNADEALVLDS--EGWVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEV 219 (269)
T ss_dssp -CCHHHHHHHHHHTTSSCSEEEEEBT--TSBEEECSSSEEEEEETTEEEEECCSSSSBCCHHHHHHHHHHHHSSSEEEEE
T ss_pred -hhHHHHHHHHHHHHCCCCEEEEECC--CCcEEEcCceEEEEEECCEEECCCCccCccCCHHHHHHHHHHHHcCCeEEEE
Confidence 8999999999999999999999998 7999999999999999999999999999999999999999999999999999
Q ss_pred ecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCCccHHHHHHHHHHH
Q 019986 262 AIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLV 314 (332)
Q Consensus 262 ~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~g~~~~~L~~~~~ 314 (332)
.++++||..|||+|+|||++||+||.+| +++.+ + .||++++|+++|.
T Consensus 220 ~i~~~eL~~adevfltns~~gv~pV~~i--d~~~~--~--~g~~~~~l~~~~~ 266 (269)
T 1i2k_A 220 QASLEESLQADEMVICNALMPVMPVCAC--GDVSF--S--SATLYEYLAPLCE 266 (269)
T ss_dssp CCBHHHHHTCSEEEEECSSSCEEEEEEE--TTEEC--C--CCHHHHHHHHHHH
T ss_pred ECCHHHHhhCCEEEEcCChhheEEEEEE--CCEEe--c--CcHHHHHHHHHHh
Confidence 9999999999999999999999999999 68876 4 4899999999986
No 12
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas aeruginosa} PDB: 2y4r_A* 2xpf_B*
Probab=100.00 E-value=1.7e-55 Score=410.08 Aligned_cols=274 Identities=22% Similarity=0.261 Sum_probs=229.3
Q ss_pred CccccCCceEEEEeccceeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCC
Q 019986 8 FGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCM 87 (332)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i 87 (332)
=.++|.++|. +|+||+++ +.+++.|++|+||||+|||||++ +|+ +|+|++|++||.+||+.|++
T Consensus 14 ~~~~~~~~m~-------~~~nG~~~----~~i~~~d~g~~yGdgvFEtir~~---~G~--~~~l~~Hl~RL~~Sa~~l~~ 77 (292)
T 2xpf_A 14 ENLYFQGHML-------DWVDGRPA----AELSVRDRGLAYGDGLFETLAVR---AGT--PRLLERHLARLEEGCRRLAI 77 (292)
T ss_dssp ---------C-------EEETTEEC----SEEETTBHHHHHCCEEEEEEEEE---TTE--ETTHHHHHHHHHHHHHHTTC
T ss_pred cccccccccE-------EEECCEEE----EEEcccchhhhcCcEeEEEEEEE---CCE--ECCHHHHHHHHHHHHHhcCC
Confidence 3456677773 78999998 77999999999999999999998 776 77899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCCCceEEEEEEEeecCCCcccCCC--CCeEEEEEEeecCccccC-CCcceEEEee
Q 019986 88 PSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKE-GLAPLNLYVE 164 (332)
Q Consensus 88 ~~p~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~~~-g~~~~~l~~~ 164 (332)
+.| .+++.+.+.++++... +++||+.++.+.+.+|+.|. ..+.+++.+.|+++++.. ..+++++.+.
T Consensus 78 ~~~-~~~l~~~i~~~v~~~~---------~~~iR~~v~rg~~~~g~~p~~~~~~~~~i~~~p~~~~~~~~~~~gv~l~~~ 147 (292)
T 2xpf_A 78 PLD-TAALRQELLAFCAALG---------DGVAKLIVTRGEGLRGYAPPAEASPRRILSGSPRPAYPERHWQQGVRLFAC 147 (292)
T ss_dssp CCC-HHHHHHHHHHHHHHHC---------SEEEEEEEECCBCCSSSSCCTTCCCEEEEEEECCCCCCHHHHHTCEEEEEC
T ss_pred CCC-HHHHHHHHHHHHHhCC---------CcEEEEEEEecCCCCCCCCCCCCCcEEEEEEEECCccchhhccCCeEEEEe
Confidence 986 8899999999998632 45888877633335677654 457788888998765421 1246777765
Q ss_pred ccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHH
Q 019986 165 DEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITR 244 (332)
Q Consensus 165 ~~~~r~~p~~l~~~Kt~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR 244 (332)
+ .+|..++.++++|+. ||+.+++++++|+++|+||+|++|+ +|+|+|++++|||+++||+|+|||++.++|+||||
T Consensus 148 ~-~~~~~~~~~~~~Kt~-ny~~~~la~~~A~~~G~de~L~ld~--~G~V~Egs~sNif~v~~g~l~TPpl~~~iL~GitR 223 (292)
T 2xpf_A 148 R-TRLAEQPLLAGLKHL-NRLEQVLARAEWSDAGHAEGLMLDV--HERVVEGVFSNLLLVLDGTLVAPDLRRCGVAGVMR 223 (292)
T ss_dssp C-CCBCCCTTTTBCCBS-CCHHHHHHHTTCCCTTCSEEEEEBT--TCCEEEESSSEEEEEETTEEEEECCSSSSBCCHHH
T ss_pred e-eeccCCCCCCCcchh-hhHHHHHHHHHHHHcCCCEEEEECC--CCCEEEcCCeEEEEEECCEEEeCCCCCccCCCHHH
Confidence 4 455555568899996 8999999999999999999999998 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCcEEEEecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCCccHHHHHHHHHHHhhh
Q 019986 245 KSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQ 317 (332)
Q Consensus 245 ~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~g~~~~~L~~~~~~~~ 317 (332)
+.|+++|+++|++|+|+.++++||.+|||+|+|||++||+||.+| +++.+ + +||++++|+++|.+.+
T Consensus 224 ~~vl~~a~~~G~~v~E~~i~~~eL~~adevfltns~~gv~PV~~i--d~~~~--~--~g~~t~~l~~~~~~~~ 290 (292)
T 2xpf_A 224 AELLERAEGIGVPLAIRDVSMAELATADEVFLCNSQFGIWPVRAL--DEHVW--P--VGELTRKLQDQLRDDL 290 (292)
T ss_dssp HHHHHHHHHTTCCEEEECBCHHHHHTCSEEEEEETTTEEEEEEEE--TTEEC--C--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEEeCCHHHHHhCCEEEEEcCcccEEEEEEE--CCEEe--C--CCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999 68876 4 6899999999998654
No 13
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila}
Probab=100.00 E-value=4.6e-55 Score=403.23 Aligned_cols=261 Identities=21% Similarity=0.266 Sum_probs=225.0
Q ss_pred eeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHH
Q 019986 25 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 103 (332)
Q Consensus 25 ~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p-~~~~l~~~i~~~~ 103 (332)
+|+|| .+++.|++.|++|+||||+|||||++ +|+ +|+|++|++||.+||+.|+|+.| +.+++.+.+.+++
T Consensus 6 ~~~nG----~~~a~i~~~d~g~~yG~gvFEtir~~---~g~--~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l~ 76 (272)
T 3lul_A 6 VIEDK----GDMTPSFGIDDRIFLGEGLFETIRVN---SSK--PSFAYMHWERLGNSARQLGIPFEISFDDWFEHLIQKI 76 (272)
T ss_dssp ECCCC----C--CCCCCTTBGGGGTCEEEEEEEEE---TTE--ESSHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHH
T ss_pred EEECC----ccccccCCccchhhcceEeEEEEEEE---CCE--eCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 78999 78889999999999999999999999 676 78899999999999999999998 9999999999999
Q ss_pred HHcCCCCCCCCCceEEEEEEEeecCCCcccCCCC--CeEEEEEEeecCccccCCCcceEEEeeccccccCCCCCCCcccc
Q 019986 104 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP--EYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAI 181 (332)
Q Consensus 104 ~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~--~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~~l~~~Kt~ 181 (332)
++++. .+++||+.++++.+.+|+.++. .+.+++. .|+++. ..++++.+. +++|..++.++++||.
T Consensus 77 ~~~~~-------~~~~irl~v~rg~~~~g~~~~~~~~~~~~~~-~p~~~~----~~~v~l~~~-~~~r~~~~~~~~~Kt~ 143 (272)
T 3lul_A 77 QKDNL-------YHGGIKAILSGGPASRGLAERGQVSQLIFQT-FNYSIQ----KHPVRLISI-NWLRDKANPLYQLKSV 143 (272)
T ss_dssp HHTTC-------SSEEEEEEEECCBCCSSTTCCCSSEEEEEEE-ECCCCC----CSCEEEEEE-EEEECTTCGGGGSCBS
T ss_pred HhcCC-------CCEEEEEEEEecCCccCcCCCCCCCcEEEEE-ECCCCc----cccEEEEEE-eEEecCCCcccchhhh
Confidence 98863 4678888776544456776542 3555555 554321 234777654 5788877788999996
Q ss_pred cChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHHHHCCCcEEEE
Q 019986 182 SNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEER 261 (332)
Q Consensus 182 ~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e~ 261 (332)
||+.+++++++|+++|+||+|++|+ +|+|+|++++|||+++||+|+|||++.++||||||+.|+++|+++|++|+|+
T Consensus 144 -nyl~~~la~~~A~~~G~de~L~ld~--~g~v~E~~~sNif~~~~g~l~TP~l~~~iL~GitR~~ll~la~~~g~~v~e~ 220 (272)
T 3lul_A 144 -NYLEAIIAQRQAIAVGADDALFFNT--ENHVTETTCANLFLIENNILYTPRVEDGILPGITRARLISHCQQHKMSVQEI 220 (272)
T ss_dssp -CCHHHHHHHHHHHHTTCSEEEEEET--TSBEEEESSCEEEEEETTEEEECCGGGTCCCCHHHHHHHHHHHHTTCCEEEC
T ss_pred -ccHHHHHHHHHHHHcCCCEEEEECC--CCeEEEcCCeEEEEEECCEEECCCCccCcCcCHHHHHHHHHHHHcCCeEEEE
Confidence 9999999999999999999999998 7999999999999999999999999999999999999999999999999999
Q ss_pred ecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCCccHHHHHHHHHHHhhhcc
Q 019986 262 AIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTG 319 (332)
Q Consensus 262 ~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~g~~~~~L~~~~~~~~~~ 319 (332)
.++++||..|||+|+|||++||+||.+| |++.+ ++ +++|++.|.+....
T Consensus 221 ~i~~~el~~adevf~~ns~~~v~PV~~i--d~~~~--~~-----t~~l~~~y~~~~~~ 269 (272)
T 3lul_A 221 SLTKKRIEDADAVFLTNSLQGIRRVLSL--DNIIF--EV-----NHPIIDKLIFLLNQ 269 (272)
T ss_dssp CCBHHHHHTCSEEEEEETTTEEEEEEEE--TTEEC--CC-----CCHHHHHHHHHHHH
T ss_pred ECCHHHHhhCCEEEEEcCchhEEEEEEE--CCEEc--ch-----HHHHHHHHHHHHhh
Confidence 9999999999999999999999999999 78887 42 78888888776543
No 14
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum}
Probab=100.00 E-value=3.7e-55 Score=410.96 Aligned_cols=269 Identities=20% Similarity=0.335 Sum_probs=197.7
Q ss_pred eeeC---CeE--eeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCCCHHHHHHHH
Q 019986 25 YFEK---GRL--SRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAV 99 (332)
Q Consensus 25 ~~~n---g~~--v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p~~~~l~~~i 99 (332)
+|+| |++ +|.+++.|+++|+||+||||+|||||++ +|+ +|+|++|++||.+||+.|+|+.|+.+++++.+
T Consensus 17 v~~n~~~G~~~~~~~~~a~i~~~Drg~~yGdgvFEtirv~---~G~--~~~l~~Hl~RL~~Sa~~L~i~~p~~~~l~~~i 91 (315)
T 3sno_A 17 LIVEPYGGSIRQQNPNLPMVFWDDAALTRGDGIFETLLIR---DGH--ACNVRRHGERFKASAALLGLPEPILEDWEKAT 91 (315)
T ss_dssp EEECSTTCCEEEECTTSCCCCTTBTTTTTCCEEEEEEEEE---TTE--ETTHHHHHHHHHHHHHHHTCCCCCHHHHHHHH
T ss_pred EEEECCCCeEEEeeHHHCcccccchHhhcCCEeEEEEEEE---CCE--ECCHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Confidence 8899 999 9999999999999999999999999999 676 78899999999999999999998889999999
Q ss_pred HHHHHHcCCCCCCCCCceEEEEEEEeecCCCcccCCCCCeEEEEEEeecCccccC-CCcceEEEeecc-c----------
Q 019986 100 KQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKE-GLAPLNLYVEDE-F---------- 167 (332)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~-g~~~~~l~~~~~-~---------- 167 (332)
.++++.+.. ..+.+++|||++++++.+..+ .+.+++++.|++.++.. ..+++++.+.+. +
T Consensus 92 ~~~v~~~~~---~n~~~~~~iRl~vtrG~~~~g-----~p~~~v~~~p~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~ 163 (315)
T 3sno_A 92 QMGIESWYS---HPNAGEASCTWTLSRGRSSTG-----LASGWLTITPVSSDKLAQREHGVSVMTSSRGYSIDTGLPGIG 163 (315)
T ss_dssp HHHHHHHHT---C--CCCEEEEEEEECCBTTTC-----CCEEEEEEEECCHHHHHHHHHCEEEEEEEC------------
T ss_pred HHHHHhhcc---cCCCCCEEEEEEEEeCCCCCC-----CCEEEEEEEECCCcchhhhcCCEEEEEecccccccccccccc
Confidence 999987320 001257899988864333333 35677888888754321 123555555431 1
Q ss_pred -----------cccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCC
Q 019986 168 -----------HRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSG 236 (332)
Q Consensus 168 -----------~r~~p~~l~~~Kt~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~ 236 (332)
.|..|+.++++||. ||+.+++++++|+++|+||+|++|+ +| |+|++++|||+++||+|+|||++.
T Consensus 164 ~~~r~~~s~~~~~~~p~~l~~~Kt~-nyl~~vla~~~A~~~G~de~l~l~~--~G-v~E~s~sN~f~~~~g~l~TPp~~~ 239 (315)
T 3sno_A 164 KATRGELSKVERTPAPWLTVGAKTL-AYAANMAALRYAKSNGFDDVIFTDG--DR-VLEGATSTVVSFKGDKIRTPSPGG 239 (315)
T ss_dssp ------------------------------------------CEEEEEEET--TE-EEEESSSEEEEEETTEEEEECCC-
T ss_pred ccccccccccccccCcccccCcchh-ccHHHHHHHHHHHHcCCCEEEEEeC--CC-cEEcCCeeEEEEECCEEEcCCCCC
Confidence 12334457899997 9999999999999999999999998 79 999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHCCCcEEEEecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCCccHHHHHHHHHHHhh
Q 019986 237 TILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGI 316 (332)
Q Consensus 237 giL~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~g~~~~~L~~~~~~~ 316 (332)
++|+||||+.|+++|+++|++|+|+.++++||..|||+|+|||++||+||++| |++.+ + .+++++.|+++|.+.
T Consensus 240 ~iL~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfl~ns~~gv~pV~~i--d~~~~--~--~~~~~~~l~~~~~~~ 313 (315)
T 3sno_A 240 DILPGTTQAALFAHATEKGWRCKEKDLSIDDLFGADSVWLVSSVRGPVRVTRL--DGHKL--R--KPDNEKEIKALITKA 313 (315)
T ss_dssp -----HHHHHHHHHHHHTTCEEEEECCBHHHHHHSSEEEEEETTTEEEEEEEE--SSSCC--C--CCTTHHHHHHHHHHH
T ss_pred CcChhHHHHHHHHHHHHcCCEEEEEECCHHHHHhCCeeEEEcCcccEEEEEEE--CCEEC--C--CChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999 78876 4 688999999999864
No 15
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Probab=100.00 E-value=2.3e-53 Score=394.41 Aligned_cols=264 Identities=24% Similarity=0.283 Sum_probs=229.5
Q ss_pred eeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHH
Q 019986 26 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 104 (332)
Q Consensus 26 ~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p-~~~~l~~~i~~~~~ 104 (332)
|.+|++++..++.+++.|+++ |||+||||+++ +|+ +|+|++|++||.+||+.|+++.| +.+++.+.+.++++
T Consensus 18 ~~~~~~~~~~~~~i~~~d~g~--G~gvFEtir~~---~G~--~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~l~~~i~~~~~ 90 (285)
T 3csw_A 18 RGKFRRADEISLDFSLFEKSL--QGAVYETLRTY---SRA--PFAAYKHYTRLKRSADFFNLPLSLSFDEFTKVLKAGAD 90 (285)
T ss_dssp TTEEEESSEEEEEHHHHHHHT--TCCEEEEEEEE---TTE--ETTHHHHHHHHHHHHHTTTCCCSSCHHHHHHHHHHHHT
T ss_pred ccCceEcccccCEeCCccccc--ceeeEEEEEEE---CCE--ECCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999 99999999999 676 78899999999999999999877 89999999999998
Q ss_pred HcCCCCCCCCCceEEEEEEEeecCCCcccCCCCCeEEEEEEeecCccccCCCcceEEEeeccccccCCC-CCCCcccccC
Q 019986 105 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPG-GAGGVKAISN 183 (332)
Q Consensus 105 ~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~-~l~~~Kt~~~ 183 (332)
.++ +.+|+|+++...+ ..+.+.+.|+++++ ..+++++.+. +++|..+. .++++|+. +
T Consensus 91 ~~~--------~~~~iR~~v~~~~----------~~~~i~~~p~~~~~--~~~~~~l~~~-~~~~~~~~~~~~~~Kt~-~ 148 (285)
T 3csw_A 91 EFK--------QEVRIKVYLFPDS----------GEVLFVFSPLNIPD--LETGVEVKIS-NVRRIPDLSTPPALKIT-G 148 (285)
T ss_dssp TCS--------SCEEEEEEECTTT----------CCEEEEEEECCCCC--CTTCEEEEEC-SSCCCCTTTSCTTCCBT-T
T ss_pred hhC--------CCeEEEEEEEcCC----------CEEEEEEEeCCCcc--ccCCeEEEEE-eEEecCCCCCCCccchh-c
Confidence 653 3578998773211 14677888887654 1345777665 34443333 35799997 6
Q ss_pred hHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHHHHCCCcEEEEec
Q 019986 184 YAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAI 263 (332)
Q Consensus 184 y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e~~i 263 (332)
|+.+++++++|++ +||+|++|+ +|+|+|++++|||+++||+|+|||++.++|+||||+.|+++|+++|++|+|+.+
T Consensus 149 ~l~~~la~~~A~~--~de~L~ld~--~G~V~Egs~sNif~v~~g~l~TP~l~~~iL~GitR~~ll~~a~~~g~~v~E~~i 224 (285)
T 3csw_A 149 RTDIVLARREIVD--CYDVILLGL--NGQVCEGSFSNVFLVKEGKLITPSLDSGILDGITRENVIKLAKSLEIPVEERVV 224 (285)
T ss_dssp CHHHHHHHTTCSS--SSEEEEECT--TSBEEEESSSEEEEEETTEEEEECGGGTCCCCHHHHHHHHHHHHTTCCEEEECC
T ss_pred cHHHHHHHHHHHh--CCeEEEECC--CCcEEEcCceEEEEEECCEEEeCCCCCCccCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 9999999888866 999999998 799999999999999999999999999999999999999999999999999999
Q ss_pred CHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCC-ccHHHHHHHHHHHhhhccCCCCCCCCee
Q 019986 264 PVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTG-AQSVSRELYSTLVGIQTGLIKDNKGWTV 329 (332)
Q Consensus 264 ~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g-~g~~~~~L~~~~~~~~~~~~~~~~~~~~ 329 (332)
+++||..|||+|+|||++||+||.+| +++.+ ++| +||++++|+++|.++++|+. .+|+.
T Consensus 225 ~~~dL~~adevfltns~~gv~PV~~i--d~~~~--~~g~~g~~t~~L~~~~~~~~~~~~---~~w~~ 284 (285)
T 3csw_A 225 WVWELFEADEMFLTHTSAGVVPVRRL--NEHSF--FEEEPGPVTATLMENFEPFVLNLE---ENWVG 284 (285)
T ss_dssp BHHHHHTCSEEEEEETTTEEEEEEEE--TTEES--CSSSCCHHHHHHHHHHHHHHHTCG---GGTTT
T ss_pred CHHHHhhCCEEEEecCcceEEEEEEE--CCEEC--CCCCCCHHHHHHHHHHHHHHhCcC---CCCCC
Confidence 99999999999999999999999999 78876 666 79999999999999999976 67874
No 16
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus}
Probab=100.00 E-value=7.9e-48 Score=350.10 Aligned_cols=224 Identities=20% Similarity=0.251 Sum_probs=189.1
Q ss_pred eeeCCeEeeCCCcccCcCCccccc-cceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 019986 25 YFEKGRLSRYGKIELSPSSGVLNY-GQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTA 103 (332)
Q Consensus 25 ~~~ng~~v~~~~~~v~~~d~~~~~-G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p~~~~l~~~i~~~~ 103 (332)
+|+||+.+ +++.|++|+| |||+||||+++ +|+ +|+|++|++||.+||+.|+++.|..+++.+.+.+++
T Consensus 2 ~~~nG~~~------~~~~d~g~~y~G~gvFEtir~~---~G~--~~~l~~Hl~RL~~Sa~~l~~~~p~~~~l~~~i~~~~ 70 (246)
T 2zgi_A 2 RLLNGTPL------ALALPEAFLYHGASVFTTLRAE---GGR--PLWLEEHLARLRRHALALGLSYPGDEAFLEDLEALL 70 (246)
T ss_dssp EEETTEEC------CCSSCHHHHHSCCCEEEEEEEE---TTE--ETTHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred EEECCccc------CCCccCcccccCeeEEEEEEEE---CCE--eCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 58999955 3899999999 99999999999 676 788999999999999999999873388999999988
Q ss_pred HHc-CCCCCCCCCceEEEEEEEeecCCCcccCCCCCeEEEEEEeecCccccC-CCcceEEEeeccccccCCCCCCCcccc
Q 019986 104 LAN-KRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKE-GLAPLNLYVEDEFHRATPGGAGGVKAI 181 (332)
Q Consensus 104 ~~~-~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~-g~~~~~l~~~~~~~r~~p~~l~~~Kt~ 181 (332)
+.+ + .+.+++|++++++++.++ ..|.+..... ..+++++.+.+ . |..|+ +.++|+.
T Consensus 71 ~~~~~-------~~~~~vR~~v~~g~~~~~------------~~p~~~~~~~~~~~g~~l~~~~-~-r~~~~-~~~~Kt~ 128 (246)
T 2zgi_A 71 RAFPK-------APCLRLRFTVGEGVRLSE------------ARPYAPLPLSLYREGVRVRLTG-Y-RVHPD-LARYKTG 128 (246)
T ss_dssp TSCTT-------CSEEEEEEEEETTEEEEE------------EEECCCCCTHHHHHCBCEEEEE-E-ECCTT-TTTSCBS
T ss_pred HhcCC-------CCCEEEEEEEECCCCccC------------cCcCCCCchhHhhcCeEEEEec-c-cCCCC-Cccchhh
Confidence 766 3 257899988864332222 2343321100 01345666654 4 77777 8899997
Q ss_pred cChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHHHHCCCcEEEE
Q 019986 182 SNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEER 261 (332)
Q Consensus 182 ~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e~ 261 (332)
||+.+++++++|+++|+||+|++|+ +|+|+|++++|||+++||+|+|| .++|+||||+.|+++|+++|++|+|+
T Consensus 129 -n~~~~~~a~~~A~~~g~de~l~ld~--~G~v~Egs~sNif~v~~g~l~TP---~~iL~GitR~~ll~~a~~~g~~v~E~ 202 (246)
T 2zgi_A 129 -NYLPYRLALEEARKEGAFEGLLLDA--FGHVVDGSRTSPLLFREGTLYLL---EGGLEGITREKVAEAARGLGLRVERG 202 (246)
T ss_dssp -CCHHHHHHHHHHHTTTCSEEEEECT--TSCEEEESSSEEEEEETTEEEEE---CSSCCCHHHHHHHHHHHHTTCEEEEE
T ss_pred -hhHHHHHHHHHHHHcCCCEEEEECC--CCCEEEcCCeEEEEEECCEEECC---CCccCcHHHHHHHHHHHHCCCeEEEE
Confidence 8999999999999999999999998 79999999999999999999999 68999999999999999999999999
Q ss_pred ecCHhhHhccceeeeecccceeEEeEEE
Q 019986 262 AIPVDELLEADEVFCTGTAVVVAPVGSI 289 (332)
Q Consensus 262 ~i~~~dL~~adevfl~ns~~gi~pV~~I 289 (332)
.++++||.. |+|+|||++||+||.+|
T Consensus 203 ~i~~~dL~~--evfltns~~gi~pV~~i 228 (246)
T 2zgi_A 203 LFRPEGLRG--HLLLAGSGVGLLPVRPP 228 (246)
T ss_dssp CCCGGGCCS--EEEEEETTTEEEEBSSC
T ss_pred eCCHHHHHh--hHeeecChhheEEEEEE
Confidence 999999988 99999999999999988
No 17
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Probab=100.00 E-value=3.1e-43 Score=314.73 Aligned_cols=207 Identities=17% Similarity=0.167 Sum_probs=178.6
Q ss_pred cccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCceEEEEEEEee
Q 019986 47 NYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVG 126 (332)
Q Consensus 47 ~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g 126 (332)
.-|+|+|||||++. +|+ +|+|++|++||.+||+.|+++. +.+++.+.+.++++ +. .+.+|||+++..
T Consensus 13 ~~g~glFEtir~~~--~G~--~~~l~~Hl~RL~~Sa~~l~~~~-~~~~l~~~i~~~~~-~~-------~~~~~iR~~~~~ 79 (221)
T 3qqm_A 13 TADFELIETMRWQP--GTS--FLRFDRHLARLYGSAAELGFAC-DPQRIAEVLSDALD-GA-------RTAMRTRLALAR 79 (221)
T ss_dssp TSCCEEEEEEEEET--TTE--ETTHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHT-TC-------CSCEEEEEEEET
T ss_pred CCCCEEEEEEEEec--CCc--CcCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh-cC-------CCCEEEEEEEEc
Confidence 35889999999982 465 7889999999999999999987 68899999999886 33 367899988764
Q ss_pred cCCCcccCCCCCeEEEEEEeecCccccCCCcceEEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEc
Q 019986 127 SGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLD 206 (332)
Q Consensus 127 ~~~~~g~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~~l~~~Kt~~~y~~~~~a~~~a~~~g~de~llln 206 (332)
.+ .+.+...|+++++. .+++++.+++ ++|..++.++++||. ||+.+.+++++|+++|+||+|++|
T Consensus 80 ~g-----------~~~i~~~p~~~~~~--~~~~~l~~~~-~~~~~~~~~~~~Kt~-nr~~~~~a~~~a~~~g~~e~l~l~ 144 (221)
T 3qqm_A 80 NG-----------DATASAQPYEPLAA--DKVWILRLAR-TRLDSQNTLLRHKTS-RRQLYTHARSEYLVTQADEVLLAN 144 (221)
T ss_dssp TS-----------CEEEEEEECCCCCT--TCCEEEEECS-CCBCTTCGGGGSCBS-CCHHHHHHHHTSCTTTCSEEEEEB
T ss_pred CC-----------CEEEEEEcCCCCCC--CCCEEEEEee-eEecCCCcchhchhc-chHHHHHHHHHHHhcCCcEEEEEC
Confidence 32 25677888876542 2467777754 566666778999996 999999999999999999999999
Q ss_pred cCCCCeEEEeCceeEEEEEC-CEEEcCCCCCCcccchHHHHHHHHHHHCCCcEEEEecCHhhHhccceeeeecccceeEE
Q 019986 207 SVNKKNLEEVSSCNIFILKG-NIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAP 285 (332)
Q Consensus 207 ~~~~G~v~E~s~sNifiv~~-~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gi~p 285 (332)
+ +|+|+|++++|||++++ |+|+|||++.++|+||||+.+++.+ +|+|+.++++||..|||+|+|||++||+|
T Consensus 145 ~--~g~v~E~s~sNif~~~~~~~l~TP~~~~~~L~GitR~~ll~~~-----~v~e~~i~~~~L~~adevf~~ns~~gi~p 217 (221)
T 3qqm_A 145 E--RGEICEGTITNVFADFGDGVLATPRLDCGLLPGVLRAELLDEG-----RAEEAIYSYDDLKSAKALFVGNSLRGLIP 217 (221)
T ss_dssp T--TSCEEEESSCEEEEECSSSCEEEECGGGTCCCCHHHHHHHHTT-----SEEEECCCHHHHTTCSEEEEEETTTEEEE
T ss_pred C--CCeEEEcCceeEEEEeCCCEEECCCCccCcchHHHHHHHHhhC-----cEEEEeCCHHHHHhCCEEEEEecceeEEE
Confidence 8 79999999999999998 9999999999999999999999973 89999999999999999999999999999
Q ss_pred eEE
Q 019986 286 VGS 288 (332)
Q Consensus 286 V~~ 288 (332)
|+-
T Consensus 218 V~l 220 (221)
T 3qqm_A 218 AKL 220 (221)
T ss_dssp EEE
T ss_pred EEE
Confidence 974
No 18
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Probab=100.00 E-value=1.8e-39 Score=284.77 Aligned_cols=189 Identities=14% Similarity=0.136 Sum_probs=154.2
Q ss_pred cccceeeeeEEEEeccCCeEeecChhhHHHHHHHHH-hhCCCC--CC-CHHHHHHHHHHHHHHcCCCCCCCCCceEEEEE
Q 019986 47 NYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGA-ERMCMP--SP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRP 122 (332)
Q Consensus 47 ~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa-~~l~i~--~p-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~ 122 (332)
+||+|+|||||++ +|+ +|+|++|++||.+|| +.|+++ .| +.+++.+.+. ++++++ .+.+|||+
T Consensus 2 ~~g~~vfEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~~l~~~~~~~~~~~~~~~~i~-~~~~~~-------~~~~~iR~ 68 (194)
T 3ceb_A 2 MWQFPLFETILIE---QGQ--AKNISYHQQRYEKSLLKFYPKMKLQPFDLAKIIAKHT-ALFTHR-------EGLIRCRI 68 (194)
T ss_dssp CTTCCEEEEEEEE---TTE--ECSHHHHHHHHHHHHHHHSTTCCCCCCCHHHHHHTCG-GGGSCS-------SSEEEEEE
T ss_pred CCCCeEEEEEEEE---CCE--ecCHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-HHhhCC-------CCCEEEEE
Confidence 5899999999999 676 788999999999999 999999 55 8888988888 777654 36789998
Q ss_pred EEeecCCCcccCCCCCeEEEEEEeecCccccCCCcceEEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeE
Q 019986 123 LLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDV 202 (332)
Q Consensus 123 ~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~~l~~~Kt~~~y~~~~~a~~~a~~~g~de~ 202 (332)
++..+. . .+...|+++. +..... ....++.++++|+. ||+ ++++.+|+++|+||+
T Consensus 69 ~~~~g~--~----------~~~~~p~~~~---~~~~~~-------~~~~~~~~~~~Kt~-n~~--~~~~~~A~~~g~de~ 123 (194)
T 3ceb_A 69 DYNHHD--Y----------VLQCFPYQQK---VYRTFK-------PVFCDHIDYSLKFS-DRT--LLNNLLKQKEECDEI 123 (194)
T ss_dssp EECSSC--E----------EEEEEEECCC---CCCCEE-------EEECSSCCCSSCBS-CCH--HHHHHHGGGTTSSEE
T ss_pred EEeCCc--c----------EEEEecCCCC---cEEEEE-------EecCCCcchhhccc-CHH--HHHHHHHhhCCCCEE
Confidence 775321 1 2333454321 111111 11234467899996 888 568889999999999
Q ss_pred EEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHHHHCCCcEEEEecCHhhHhccceeeeecccce
Q 019986 203 LYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVV 282 (332)
Q Consensus 203 llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~g 282 (332)
|++ + +|+|+|++++|||+++||+|+||| .++|+||||+.|++ +++|+|+.++++||.+|||+|+|||++|
T Consensus 124 l~l-~--~G~v~E~s~sNif~~~~g~l~TP~--~~~L~GitR~~ll~-----~~~v~e~~i~~~eL~~adevfl~ns~~g 193 (194)
T 3ceb_A 124 MII-R--QGKVTDCSIGNLIFRQNNQWITPD--KPLLEGTQRAKLLE-----QKKIIAREIFFEDLAQYEEIRLINAMNG 193 (194)
T ss_dssp EEE-E--TTEECCCSSSEEEEEETTEEEEES--SCSSCCHHHHHHHH-----TTSSEEECCBGGGGGGCSCEEEEBTTBC
T ss_pred EEE-e--CCEEEEeccEEEEEEECCEEECCC--CCCcChHHHHHHHc-----CCCEEEecCCHHHHhhccEEEEEecccC
Confidence 999 7 799999999999999999999999 68999999999998 4799999999999999999999999998
Q ss_pred e
Q 019986 283 V 283 (332)
Q Consensus 283 i 283 (332)
+
T Consensus 194 i 194 (194)
T 3ceb_A 194 L 194 (194)
T ss_dssp C
T ss_pred C
Confidence 6
No 19
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=36.32 E-value=16 Score=26.73 Aligned_cols=48 Identities=13% Similarity=0.098 Sum_probs=26.1
Q ss_pred HHHHHHHCCCcEEEEecCHhhHhccceeeeecccceeEEeEEEEeCCeEE
Q 019986 247 IIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRI 296 (332)
Q Consensus 247 vl~~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i 296 (332)
+.+++.+.|+++++.++.-+. ...+++.-.+...--+|+.-|. ||..+
T Consensus 20 aK~~L~~~gi~y~~idi~~d~-~~~~~~~~~~~G~~tVP~I~i~-Dg~~l 67 (92)
T 2lqo_A 20 LKTALTANRIAYDEVDIEHNR-AAAEFVGSVNGGNRTVPTVKFA-DGSTL 67 (92)
T ss_dssp HHHHHHHTTCCCEEEETTTCH-HHHHHHHHHSSSSSCSCEEEET-TSCEE
T ss_pred HHHHHHhcCCceEEEEcCCCH-HHHHHHHHHcCCCCEeCEEEEe-CCEEE
Confidence 445667789999999986322 2223332223223345765442 55554
No 20
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=33.49 E-value=66 Score=24.48 Aligned_cols=45 Identities=13% Similarity=0.241 Sum_probs=34.3
Q ss_pred CCcccchHHHHHHH-HHHHCCCcEEE---------EecCHhhHhccceeeeeccc
Q 019986 236 GTILAGITRKSIIE-IASDCGFQVEE---------RAIPVDELLEADEVFCTGTA 280 (332)
Q Consensus 236 ~giL~GitR~~vl~-~~~~~g~~v~e---------~~i~~~dL~~adevfl~ns~ 280 (332)
.|+-...|-...|+ .|+++|+++.. ..++.+|+..||-|++.+..
T Consensus 16 tGiAHTyMAAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~ 70 (111)
T 2kyr_A 16 MGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATIIIHSVAV 70 (111)
T ss_dssp SCHHHHHHHHHHHHHHHHHTSSEEEEEEEETTEEESCCCHHHHHHCSEEEEEESS
T ss_pred CcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcCCCCCHHHHHhCCEEEEEeCC
Confidence 36666666555555 77889987653 35999999999999998874
No 21
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=23.37 E-value=1.1e+02 Score=23.10 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=39.8
Q ss_pred CCcccchHHHHHHH-HHHHCCCcEEE---------EecCHhhHhccceeeeecccceeEEeEEEEeCCeEE
Q 019986 236 GTILAGITRKSIIE-IASDCGFQVEE---------RAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRI 296 (332)
Q Consensus 236 ~giL~GitR~~vl~-~~~~~g~~v~e---------~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i 296 (332)
.|+-...|-...|+ .++++|+++.. ..++.+|+..||-|++.+.. .+- -. .++|+++
T Consensus 13 tGiAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~-~v~-~~--RF~GK~v 79 (106)
T 2r48_A 13 NGIAHTYMAAENLQKAADRLGVSIKVETQGGIGVENKLTEEEIREADAIIIAADR-SVN-KD--RFIGKKL 79 (106)
T ss_dssp SCSHHHHHHHHHHHHHHHHHTCEEEEEEEETTEEESCCCHHHHHHCSEEEEEESS-CCC-CG--GGTTSBE
T ss_pred CcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCC-ccC-Hh--HcCCCeE
Confidence 47777777666665 66778887643 34999999999999998874 332 22 2467765
No 22
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=22.12 E-value=1.1e+02 Score=23.10 Aligned_cols=57 Identities=16% Similarity=0.346 Sum_probs=38.7
Q ss_pred CCcccchHHHHHHH-HHHHCCCcEEE---------EecCHhhHhccceeeeecccceeEEeEEEEeCCeEE
Q 019986 236 GTILAGITRKSIIE-IASDCGFQVEE---------RAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRI 296 (332)
Q Consensus 236 ~giL~GitR~~vl~-~~~~~g~~v~e---------~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i 296 (332)
.|+-...|-...|+ .++++|+++.. ..++.+|+..||-|++.+.. .+- -. .++|+++
T Consensus 13 tGiAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~-~v~-~~--RF~GK~v 79 (106)
T 2r4q_A 13 TGIAHTFMAADALKEKAKELGVEIKVETNGSSGIKHKLTAQEIEDAPAIIVAADK-QVE-ME--RFKGKRV 79 (106)
T ss_dssp CC--CHHHHHHHHHHHHHHHTCCEEEEEEETTEEESCCCHHHHHHCSCEEEEESS-CCC-CG--GGTTSBE
T ss_pred CcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCC-ccC-Hh--HcCCCeE
Confidence 47777778777676 66778886543 34999999999999998874 332 22 2467765
No 23
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=20.97 E-value=1.3e+02 Score=22.56 Aligned_cols=45 Identities=7% Similarity=0.045 Sum_probs=33.2
Q ss_pred CCcccchH-HHHHHHHHHHCCCcEEE---------EecCHhhHhccceeeeeccc
Q 019986 236 GTILAGIT-RKSIIEIASDCGFQVEE---------RAIPVDELLEADEVFCTGTA 280 (332)
Q Consensus 236 ~giL~Git-R~~vl~~~~~~g~~v~e---------~~i~~~dL~~adevfl~ns~ 280 (332)
.|+=...| .+.+-+.|+++|+++.- ..++.+++..||-+++....
T Consensus 13 tGiAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~~AD~VIia~d~ 67 (106)
T 2m1z_A 13 TGVAHTYMAAQALKKGAKKMGNLIKVETQGATGIENELTEKDVNIGEVVIFAVDT 67 (106)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHHHCSEEEEEESS
T ss_pred CcHHHHHHHHHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHhhCCEEEEeccc
Confidence 36667777 44555678888986642 34788999999999998864
Done!