BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019987
         (332 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A4D0V7|CPED1_HUMAN Cadherin-like and PC-esterase domain-containing protein 1 OS=Homo
           sapiens GN=CPED1 PE=2 SV=1
          Length = 1026

 Score = 44.7 bits (104), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 140 SDVRYQYWR---WQPHNCNLKRWNATEMWEKLRGKRLMFVGDSLNRG 183
           SD R   WR   WQPHNC        ++ + L G++++F+GDS NRG
Sbjct: 735 SDNRTCDWREITWQPHNCQYGVLTKPQLQQCLGGRKILFIGDSTNRG 781


>sp|Q1LW89|CASD1_DANRE CAS1 domain-containing protein 1 OS=Danio rerio GN=casd1 PE=2 SV=2
          Length = 781

 Score = 42.7 bits (99), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 10/79 (12%)

Query: 149 WQPHNCNLKRWNATEMWEKLRGKRLMFVGDSLNRGQWISMLCLLQSVIPE--NKRSITPN 206
           WQP+ C L ++ +TE    LR KR+ FVGDS  R  + S + ++   + E  NK    P 
Sbjct: 64  WQPYGCMLHKYKSTEAKFCLREKRIAFVGDSRIRQLFYSFIKMMNPEVKEVGNKHENIPF 123

Query: 207 AQLTIFRAEEYNATVEFLW 225
                    + ++TV FLW
Sbjct: 124 V--------DGDSTVNFLW 134


>sp|Q7TN73|CASD1_MOUSE CAS1 domain-containing protein 1 OS=Mus musculus GN=Casd1 PE=2 SV=1
          Length = 797

 Score = 40.4 bits (93), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 9/113 (7%)

Query: 149 WQPHNCNLKRWNATEMWEKLRGKRLMFVGDSLNRGQWISMLCLLQSVIPE--NKRSITPN 206
           WQPH+C + ++  +E    L  K + F+GDS  R  + S + ++     E  NK    P 
Sbjct: 64  WQPHSCMMHKYKISEAKTCLVDKHIAFIGDSRIRQLFYSFVKIINPQFKEEGNKHENIP- 122

Query: 207 AQLTIFRAEEYNATVEFLWAPLLVESNSDDPVNHRLDERIICPDSVLKHSSQW 259
                F  +  +  V+FLW P  V  +    +    ++ ++ P  ++  ++ W
Sbjct: 123 -----FEDKAASVKVDFLWHP-EVNGSMKQCIKVWTEDSVLKPHVIVAGAATW 169


>sp|Q96PB1|CASD1_HUMAN CAS1 domain-containing protein 1 OS=Homo sapiens GN=CASD1 PE=2 SV=1
          Length = 797

 Score = 39.7 bits (91), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 8/81 (9%)

Query: 149 WQPHNCNLKRWNATEMWEKLRGKRLMFVGDSLNRGQWISMLCLLQSVIPE--NKRSITPN 206
           WQPH+C + ++  +E    L  K + F+GDS  R  + S + ++     E  NK    P 
Sbjct: 64  WQPHSCMMHKYKISEAKNCLVDKHIAFIGDSRIRQLFYSFVKIINPQFKEEGNKHENIP- 122

Query: 207 AQLTIFRAEEYNATVEFLWAP 227
                F  +  +  V+FLW P
Sbjct: 123 -----FEDKTASVKVDFLWHP 138


>sp|Q9N5D6|UNC62_CAEEL Homeobox protein unc-62 OS=Caenorhabditis elegans GN=unc-62 PE=1
           SV=1
          Length = 564

 Score = 33.9 bits (76), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 12/125 (9%)

Query: 7   CNRKRTHSPLIALFFLVFIVCSILYNELSIQRIHQDSHHDHQEAPVRYIQPNLFDRKSEV 66
            N    HS   A   L+ I  S   +  S   + QDS     E P+ +   N  D  SE 
Sbjct: 305 ANGGTLHSTAGASQTLLPIAVSSP-STCSSGGLRQDSTPLSGETPMGHANGNSMDSISEA 363

Query: 67  LDRFSKCNATREYSGSKIGWADPRVKSGRRRVGSERCDVFSGK-------WVFDNASYPL 119
            D FS C +  +   S +  +    ++G+R+V      VFS +       W+F N ++P 
Sbjct: 364 GDEFSVCGSNDDGRDSVLSDSANGSQNGKRKV----PKVFSKEAITKFRAWLFHNLTHPY 419

Query: 120 YNESQ 124
            +E Q
Sbjct: 420 PSEEQ 424


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.134    0.445 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,200,345
Number of Sequences: 539616
Number of extensions: 5076464
Number of successful extensions: 9526
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9521
Number of HSP's gapped (non-prelim): 7
length of query: 332
length of database: 191,569,459
effective HSP length: 118
effective length of query: 214
effective length of database: 127,894,771
effective search space: 27369480994
effective search space used: 27369480994
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)