Query 019987
Match_columns 332
No_of_seqs 172 out of 770
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:07:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02629 powdery mildew resist 100.0 9.1E-75 2E-79 569.3 21.0 230 96-332 46-278 (387)
2 PF13839 PC-Esterase: GDSL/SGN 100.0 2.3E-29 5E-34 231.5 15.3 156 156-332 1-168 (263)
3 PF14416 PMR5N: PMR5 N termina 99.9 1.3E-24 2.7E-29 159.3 4.1 54 101-155 2-55 (55)
4 cd01842 SGNH_hydrolase_like_5 97.8 9.4E-05 2E-09 66.8 8.0 52 262-328 51-102 (183)
5 cd01829 SGNH_hydrolase_peri2 S 67.0 4.8 0.0001 35.2 2.7 60 260-330 58-120 (200)
6 cd01841 NnaC_like NnaC (CMP-Ne 63.8 3.1 6.7E-05 35.7 0.8 14 171-184 1-14 (174)
7 cd01834 SGNH_hydrolase_like_2 63.4 3.9 8.5E-05 35.1 1.4 15 170-184 1-15 (191)
8 COG2845 Uncharacterized protei 55.5 10 0.00022 37.8 2.8 26 169-194 115-140 (354)
9 cd01825 SGNH_hydrolase_peri1 S 44.5 9.7 0.00021 32.8 0.7 12 172-183 1-12 (189)
10 cd01820 PAF_acetylesterase_lik 41.8 20 0.00043 32.1 2.4 15 170-184 32-46 (214)
11 cd01838 Isoamyl_acetate_hydrol 41.3 11 0.00025 32.4 0.7 56 261-329 63-118 (199)
12 cd01835 SGNH_hydrolase_like_3 41.0 13 0.00029 32.3 1.1 14 171-184 2-15 (193)
13 cd01844 SGNH_hydrolase_like_6 40.6 14 0.0003 32.0 1.2 13 172-184 1-13 (177)
14 cd01832 SGNH_hydrolase_like_1 38.5 13 0.00028 32.0 0.6 29 296-328 87-115 (185)
15 PF11119 DUF2633: Protein of u 37.9 35 0.00077 25.6 2.7 27 7-33 2-29 (59)
16 PF05961 Chordopox_A13L: Chord 37.8 32 0.00068 26.6 2.5 18 16-33 5-22 (68)
17 cd01827 sialate_O-acetylestera 35.5 19 0.00041 31.1 1.2 32 296-329 88-119 (188)
18 PRK10528 multifunctional acyl- 35.5 20 0.00044 31.7 1.4 15 170-184 10-24 (191)
19 PF09949 DUF2183: Uncharacteri 35.4 31 0.00066 28.3 2.3 24 160-183 54-77 (100)
20 cd01822 Lysophospholipase_L1_l 34.3 20 0.00043 30.4 1.1 47 260-326 63-109 (177)
21 PHA03049 IMV membrane protein; 33.9 40 0.00086 26.0 2.5 18 16-33 5-22 (68)
22 cd01831 Endoglucanase_E_like E 33.4 21 0.00045 30.7 1.0 13 172-184 1-13 (169)
23 cd01833 XynB_like SGNH_hydrola 32.1 17 0.00037 30.4 0.3 12 172-183 2-13 (157)
24 PF12026 DUF3513: Domain of un 30.9 3.3 7.2E-05 38.6 -4.5 17 168-184 132-148 (210)
25 PF00185 OTCace: Aspartate/orn 30.5 37 0.0008 29.7 2.2 25 169-194 1-25 (158)
26 PF12273 RCR: Chitin synthesis 28.7 67 0.0014 27.1 3.4 10 28-37 19-28 (130)
27 cd01830 XynE_like SGNH_hydrola 28.4 28 0.00061 30.9 1.1 31 295-329 100-130 (204)
28 cd01839 SGNH_arylesterase_like 27.9 29 0.00063 30.7 1.1 33 296-328 100-135 (208)
29 cd01836 FeeA_FeeB_like SGNH_hy 26.8 33 0.00071 29.7 1.2 31 296-328 86-116 (191)
30 cd04501 SGNH_hydrolase_like_4 26.3 31 0.00068 29.6 1.0 49 260-328 58-106 (183)
31 cd04502 SGNH_hydrolase_like_7 25.3 33 0.00071 29.3 0.9 13 173-185 2-14 (171)
32 PF01405 PsbT: Photosystem II 25.3 81 0.0017 20.5 2.4 18 16-33 8-25 (29)
33 PRK14748 kdpF potassium-transp 25.1 75 0.0016 20.5 2.2 19 16-34 10-28 (29)
34 cd01821 Rhamnogalacturan_acety 24.1 39 0.00085 29.6 1.2 54 260-328 64-117 (198)
35 PRK14805 ornithine carbamoyltr 21.2 63 0.0014 31.5 2.1 42 151-194 128-169 (302)
36 PHA02902 putative IMV membrane 20.6 97 0.0021 23.8 2.5 18 16-33 6-23 (70)
37 PRK04284 ornithine carbamoyltr 20.6 74 0.0016 31.5 2.4 25 168-193 153-177 (332)
38 PF00702 Hydrolase: haloacid d 20.2 77 0.0017 27.5 2.3 20 162-181 185-206 (215)
39 PRK11875 psbT photosystem II r 20.0 1E+02 0.0022 20.2 2.2 18 16-33 8-25 (31)
No 1
>PLN02629 powdery mildew resistance 5
Probab=100.00 E-value=9.1e-75 Score=569.27 Aligned_cols=230 Identities=37% Similarity=0.795 Sum_probs=211.2
Q ss_pred ccCCCCCccccccccccCCCCCCCcCCCCCC-CccCCcccccCCCCCcccccceeecCCCcCCCCCHHHHHHHHcCCeEE
Q 019987 96 RRVGSERCDVFSGKWVFDNASYPLYNESQCP-YMSDQLACHKHGRSDVRYQYWRWQPHNCNLKRWNATEMWEKLRGKRLM 174 (332)
Q Consensus 96 ~~~~~~~Cdl~~G~WV~d~~~~P~Y~~~~Cp-~i~~~~nC~~nGR~D~~y~~WrWqP~gC~Lprfd~~~~l~cLrgK~l~ 174 (332)
...+.++||+|+|+||+|+ ++|+|++.+|| ||++++||++|||||++|++|||||++|+|||||+.+||+.||||+||
T Consensus 46 ~~~~~~~CD~f~G~WV~D~-s~PlY~~~~Cp~fi~~~~nC~knGRPD~~Yl~WRWqP~gC~LPRFda~~fLe~~RgKrl~ 124 (387)
T PLN02629 46 LQANQSTCALFVGTWVRDD-SYPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQPLNCELPRFNGLEFLLKMKGKTVM 124 (387)
T ss_pred CCCCccccCCCCCeEecCC-CCCCCCCCCCccccccccchhhcCCCCcchhhccccCCCCCCCCcCHHHHHHHhcCCeEE
Confidence 3455788999999999995 78999999999 999999999999999999999999999999999999999999999999
Q ss_pred EEecchhHHHHHHHHHhhcccCCCCceeeccCCceEEEEEccCcEEEEEEEcccccccCCCCCCCCCCccceeccccccc
Q 019987 175 FVGDSLNRGQWISMLCLLQSVIPENKRSITPNAQLTIFRAEEYNATVEFLWAPLLVESNSDDPVNHRLDERIICPDSVLK 254 (332)
Q Consensus 175 FVGDSl~Rq~~~SLlclL~~~~p~~~~~~~~~~~~~~~~f~~~n~TV~f~WsPfLv~~~~~~~~~~~~~~~~l~lD~id~ 254 (332)
|||||++|||||||+|||++++|...+.+..+++..+|+|++||+||+|||+||||+.+.+. ..+.+++|+++.
T Consensus 125 FVGDSL~RNQ~eSLvClL~~~~p~~~~~~~~~~~~~~~~F~~yN~TV~~ywspfLV~~~~~~------~~~~l~LD~id~ 198 (387)
T PLN02629 125 FVGDSLGRNQWESLICLISSSVPSTRTQMSRGDPLSTFKFLDYGVSISFYKAPYLVDIDAVQ------GKRVLKLEEISG 198 (387)
T ss_pred EeccccchhHHHHHHHHhhccCCCCceeeecCCceEEEEeccCCEEEEEEecceEEeeecCC------CceeEEecCcch
Confidence 99999999999999999999887665555566778999999999999999999999976532 124689999998
Q ss_pred cccCCCCccEEEEccceecccCCcccccccccCCc--cccCChHHHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCCCC
Q 019987 255 HSSQWEQADILVFNSYLWWRQGPVKLLWSSEENGV--CEELDGLGAMELAMSAWADWVASKLNPLKKRVFFVTMSPTHLW 332 (332)
Q Consensus 255 ~~~~~~~~DVLV~ntG~W~~~~~~~~~~~~~~~~~--~~~~~~~~Ayr~alrt~~~wv~~~~~~~kt~VffRT~SP~Hf~ 332 (332)
++..|.++|||||||||||.+++....++++++|+ ++++++.+||++||+||++||++++++.+|+|||||+||+||+
T Consensus 199 ~a~~w~~~DvlVfntghWw~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffrT~SP~Hfe 278 (387)
T PLN02629 199 NANAWRDADVLIFNTGHWWSHQGSLQGWDYIESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSISPTHYN 278 (387)
T ss_pred hhhhhccCCEEEEeCccccCCCCeeEEeeeeccCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCccccc
Confidence 88999999999999999999998777788887776 8999999999999999999999999999999999999999996
No 2
>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Probab=99.96 E-value=2.3e-29 Score=231.51 Aligned_cols=156 Identities=35% Similarity=0.654 Sum_probs=122.5
Q ss_pred CCCCCHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhcccCC-----CCceeeccCCceEEEEEccCcEEEEEEEccccc
Q 019987 156 LKRWNATEMWEKLRGKRLMFVGDSLNRGQWISMLCLLQSVIP-----ENKRSITPNAQLTIFRAEEYNATVEFLWAPLLV 230 (332)
Q Consensus 156 Lprfd~~~~l~cLrgK~l~FVGDSl~Rq~~~SLlclL~~~~p-----~~~~~~~~~~~~~~~~f~~~n~TV~f~WsPfLv 230 (332)
|++||+.++|++||||+|+|||||++||+|++|+|+|.+..+ .........+....|.++++|+|++|+|+|||+
T Consensus 1 ~~~~d~~~cL~~lr~k~i~fiGDS~~Rq~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~p~l~ 80 (263)
T PF13839_consen 1 LPRFDARECLQRLRNKRIVFIGDSTTRQQYESLVCLLGPEVPSWQESPHSGIEFPNHRNFRYNFPDYNVTLSFYWDPFLV 80 (263)
T ss_pred CChhhHHHHHHHccCCEEEEEechhhHHHHHHHHHHHhccccccccccccccccccCCceEEeecCCCeEEEEecccccc
Confidence 578899999999999999999999999999999999998755 111111123456778899999999999999999
Q ss_pred ccCCCCCCCCCCccceecccccc-ccccCCC----CccEEEEccceecccCCcccccccccCCccccCChHHHHHHHHHH
Q 019987 231 ESNSDDPVNHRLDERIICPDSVL-KHSSQWE----QADILVFNSYLWWRQGPVKLLWSSEENGVCEELDGLGAMELAMSA 305 (332)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~lD~id-~~~~~~~----~~DVLV~ntG~W~~~~~~~~~~~~~~~~~~~~~~~~~Ayr~alrt 305 (332)
+. +|.++ .+...|. .+||||+|+|+||.+.+....+ ... .+++..++|+.+|++
T Consensus 81 ~~----------------l~~~~~~~~~~~~~~~~~pdvvV~nsG~W~~~~~~~~~~----~~~-~~~~~~~~y~~~l~~ 139 (263)
T PF13839_consen 81 DQ----------------LDSIDEEIANNWPTSGARPDVVVINSGLWYLRRSGFIEW----GDN-KEINPLEAYRNRLRT 139 (263)
T ss_pred cc----------------ccccchhhhccccccccCCCEEEEEcchhhhhcchhccc----CCC-cCcchHHHHHHHHHH
Confidence 64 11111 1222333 8999999999999988754333 111 457789999999999
Q ss_pred HHHHHHhhcCCCC--ceEEEEecCCCCCC
Q 019987 306 WADWVASKLNPLK--KRVFFVTMSPTHLW 332 (332)
Q Consensus 306 ~~~wv~~~~~~~k--t~VffRT~SP~Hf~ 332 (332)
+++++.+.+++.+ ++||||+++|.||+
T Consensus 140 ~~~~~~~~~~~~~~~~~v~~r~~~P~h~~ 168 (263)
T PF13839_consen 140 LADWVRRLLDRSKPPTRVFWRTTSPVHFE 168 (263)
T ss_pred HHHHHHhhhccccccceEEEEecCCcccc
Confidence 9999999887766 99999999999985
No 3
>PF14416 PMR5N: PMR5 N terminal Domain
Probab=99.90 E-value=1.3e-24 Score=159.35 Aligned_cols=54 Identities=52% Similarity=1.315 Sum_probs=51.7
Q ss_pred CCccccccccccCCCCCCCcCCCCCCCccCCcccccCCCCCcccccceeecCCCc
Q 019987 101 ERCDVFSGKWVFDNASYPLYNESQCPYMSDQLACHKHGRSDVRYQYWRWQPHNCN 155 (332)
Q Consensus 101 ~~Cdl~~G~WV~d~~~~P~Y~~~~Cp~i~~~~nC~~nGR~D~~y~~WrWqP~gC~ 155 (332)
++||+|+|+||+|+ ++|+|++.+||||++++||++|||||++|++|||||++|+
T Consensus 2 ~~Cd~~~G~WV~D~-~~PlY~~~~Cp~i~~~~nC~~nGRpD~~y~~wRWqP~~Cd 55 (55)
T PF14416_consen 2 KRCDYFDGRWVPDP-SYPLYTNSTCPFIDEGFNCQKNGRPDSDYLKWRWQPRGCD 55 (55)
T ss_pred CccCcccCEEEeCC-CCCccCCCCCCcCCCccchhhcCCCCCccceeeecCCCCC
Confidence 67999999999995 6799999999999999999999999999999999999996
No 4
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=97.78 E-value=9.4e-05 Score=66.81 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=39.3
Q ss_pred ccEEEEccceecccCCcccccccccCCccccCChHHHHHHHHHHHHHHHHhhcCCCCceEEEEecCC
Q 019987 262 ADILVFNSYLWWRQGPVKLLWSSEENGVCEELDGLGAMELAMSAWADWVASKLNPLKKRVFFVTMSP 328 (332)
Q Consensus 262 ~DVLV~ntG~W~~~~~~~~~~~~~~~~~~~~~~~~~Ayr~alrt~~~wv~~~~~~~kt~VffRT~SP 328 (332)
.|||+||+|.|=... +. + ..++-|++-|.+++.-+.+-+ |.+++++|.|++|
T Consensus 51 ~DVIi~Ns~LWDl~r--------y~-----~-~~~~~Y~~NL~~Lf~rLk~~l-p~~allIW~tt~P 102 (183)
T cd01842 51 LDLVIMNSCLWDLSR--------YQ-----R-NSMKTYRENLERLFSKLDSVL-PIECLIVWNTAMP 102 (183)
T ss_pred eeEEEEecceecccc--------cC-----C-CCHHHHHHHHHHHHHHHHhhC-CCccEEEEecCCC
Confidence 499999999995422 10 1 247889999999988666544 5678999999998
No 5
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=66.98 E-value=4.8 Score=35.24 Aligned_cols=60 Identities=12% Similarity=0.022 Sum_probs=36.2
Q ss_pred CCccEEEEccceecccCCcccccccccCCcc---ccCChHHHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCC
Q 019987 260 EQADILVFNSYLWWRQGPVKLLWSSEENGVC---EELDGLGAMELAMSAWADWVASKLNPLKKRVFFVTMSPTH 330 (332)
Q Consensus 260 ~~~DVLV~ntG~W~~~~~~~~~~~~~~~~~~---~~~~~~~Ayr~alrt~~~wv~~~~~~~kt~VffRT~SP~H 330 (332)
..+|+||+..|.+=.... ...+.. ..-.+.++|+..|+.+++.+.+ .+.+|++-+..|.+
T Consensus 58 ~~pd~vii~~G~ND~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~----~~~~vili~~pp~~ 120 (200)
T cd01829 58 EKPDVVVVFLGANDRQDI-------RDGDGYLKFGSPEWEEEYRQRIDELLNVARA----KGVPVIWVGLPAMR 120 (200)
T ss_pred CCCCEEEEEecCCCCccc-------cCCCceeecCChhHHHHHHHHHHHHHHHHHh----CCCcEEEEcCCCCC
Confidence 468999999888753211 000000 0112467888888888776553 35678888877754
No 6
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=63.79 E-value=3.1 Score=35.71 Aligned_cols=14 Identities=50% Similarity=0.873 Sum_probs=12.4
Q ss_pred CeEEEEecchhHHH
Q 019987 171 KRLMFVGDSLNRGQ 184 (332)
Q Consensus 171 K~l~FVGDSl~Rq~ 184 (332)
|+|+|+|||++.++
T Consensus 1 ~~iv~~GdS~t~~~ 14 (174)
T cd01841 1 KNIVFIGDSLFEGW 14 (174)
T ss_pred CCEEEEcchhhhcC
Confidence 68999999999865
No 7
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=63.42 E-value=3.9 Score=35.06 Aligned_cols=15 Identities=33% Similarity=0.851 Sum_probs=13.8
Q ss_pred CCeEEEEecchhHHH
Q 019987 170 GKRLMFVGDSLNRGQ 184 (332)
Q Consensus 170 gK~l~FVGDSl~Rq~ 184 (332)
|++|+++|||++-+.
T Consensus 1 ~~~v~~~GDSit~g~ 15 (191)
T cd01834 1 GDRIVFIGNSITDRG 15 (191)
T ss_pred CCEEEEeCCChhhcc
Confidence 789999999999976
No 8
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.55 E-value=10 Score=37.75 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.4
Q ss_pred cCCeEEEEecchhHHHHHHHHHhhcc
Q 019987 169 RGKRLMFVGDSLNRGQWISMLCLLQS 194 (332)
Q Consensus 169 rgK~l~FVGDSl~Rq~~~SLlclL~~ 194 (332)
.+++|.|||||+++.+-+.|..-|..
T Consensus 115 ~a~kvLvvGDslm~gla~gl~~al~t 140 (354)
T COG2845 115 DADKVLVVGDSLMQGLAEGLDKALAT 140 (354)
T ss_pred CCCEEEEechHHhhhhHHHHHHHhcc
Confidence 57899999999999999988776654
No 9
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=44.47 E-value=9.7 Score=32.75 Aligned_cols=12 Identities=42% Similarity=0.578 Sum_probs=10.6
Q ss_pred eEEEEecchhHH
Q 019987 172 RLMFVGDSLNRG 183 (332)
Q Consensus 172 ~l~FVGDSl~Rq 183 (332)
||+|+|||++-.
T Consensus 1 ~iv~~GDS~t~g 12 (189)
T cd01825 1 RIAQLGDSHIAG 12 (189)
T ss_pred CeeEecCccccc
Confidence 689999999974
No 10
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=41.77 E-value=20 Score=32.15 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=12.8
Q ss_pred CCeEEEEecchhHHH
Q 019987 170 GKRLMFVGDSLNRGQ 184 (332)
Q Consensus 170 gK~l~FVGDSl~Rq~ 184 (332)
..+|+|+|||++...
T Consensus 32 ~~~iv~lGDSit~g~ 46 (214)
T cd01820 32 EPDVVFIGDSITQNW 46 (214)
T ss_pred CCCEEEECchHhhhh
Confidence 348999999999975
No 11
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=41.26 E-value=11 Score=32.38 Aligned_cols=56 Identities=16% Similarity=0.064 Sum_probs=32.1
Q ss_pred CccEEEEccceecccCCcccccccccCCccccCChHHHHHHHHHHHHHHHHhhcCCCCceEEEEecCCC
Q 019987 261 QADILVFNSYLWWRQGPVKLLWSSEENGVCEELDGLGAMELAMSAWADWVASKLNPLKKRVFFVTMSPT 329 (332)
Q Consensus 261 ~~DVLV~ntG~W~~~~~~~~~~~~~~~~~~~~~~~~~Ayr~alrt~~~wv~~~~~~~kt~VffRT~SP~ 329 (332)
.+|+||+..|.-=..... .+.-...+.|+..++.+++.+.+. .++++|++-|..|.
T Consensus 63 ~pd~vii~~G~ND~~~~~-----------~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~ii~~t~~~~ 118 (199)
T cd01838 63 QPDLVTIFFGANDAALPG-----------QPQHVPLDEYKENLRKIVSHLKSL--SPKTKVILITPPPV 118 (199)
T ss_pred CceEEEEEecCccccCCC-----------CCCcccHHHHHHHHHHHHHHHHhh--CCCCeEEEeCCCCC
Confidence 688888876643221110 000012567788888877766653 23566777777663
No 12
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=40.96 E-value=13 Score=32.32 Aligned_cols=14 Identities=64% Similarity=0.840 Sum_probs=12.1
Q ss_pred CeEEEEecchhHHH
Q 019987 171 KRLMFVGDSLNRGQ 184 (332)
Q Consensus 171 K~l~FVGDSl~Rq~ 184 (332)
++|+|+|||++...
T Consensus 2 ~~i~~lGDSit~G~ 15 (193)
T cd01835 2 KRLIVVGDSLVYGW 15 (193)
T ss_pred cEEEEEcCccccCC
Confidence 58999999999763
No 13
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=40.62 E-value=14 Score=31.99 Aligned_cols=13 Identities=31% Similarity=0.675 Sum_probs=11.5
Q ss_pred eEEEEecchhHHH
Q 019987 172 RLMFVGDSLNRGQ 184 (332)
Q Consensus 172 ~l~FVGDSl~Rq~ 184 (332)
||+|+|||++.+.
T Consensus 1 ~iv~~GDSit~G~ 13 (177)
T cd01844 1 PWVFYGTSISQGA 13 (177)
T ss_pred CEEEEeCchhcCc
Confidence 6899999999875
No 14
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=38.54 E-value=13 Score=32.00 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEEecCC
Q 019987 296 LGAMELAMSAWADWVASKLNPLKKRVFFVTMSP 328 (332)
Q Consensus 296 ~~Ayr~alrt~~~wv~~~~~~~kt~VffRT~SP 328 (332)
.+.|+..++.+++.+.. +.+.|++-|..|
T Consensus 87 ~~~~~~~~~~~i~~i~~----~~~~vil~~~~~ 115 (185)
T cd01832 87 PDTYRADLEEAVRRLRA----AGARVVVFTIPD 115 (185)
T ss_pred HHHHHHHHHHHHHHHHh----CCCEEEEecCCC
Confidence 45677777777776652 244566666544
No 15
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=37.87 E-value=35 Score=25.64 Aligned_cols=27 Identities=19% Similarity=0.405 Sum_probs=19.6
Q ss_pred cCCCCCCccHHHHHHHHHHHHH-HHhhh
Q 019987 7 CNRKRTHSPLIALFFLVFIVCS-ILYNE 33 (332)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 33 (332)
.+|+....--|||++-++|+|+ ++|.-
T Consensus 2 r~k~~~~mtriVLLISfiIlfgRl~Y~~ 29 (59)
T PF11119_consen 2 RRKKNSRMTRIVLLISFIILFGRLIYSA 29 (59)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777888888888888 77753
No 16
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=37.83 E-value=32 Score=26.57 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 019987 16 LIALFFLVFIVCSILYNE 33 (332)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~ 33 (332)
+|++++|+.|+-.|||+=
T Consensus 5 ~iLi~ICVaii~lIlY~i 22 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGI 22 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678899999999999864
No 17
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=35.54 E-value=19 Score=31.09 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEEecCCC
Q 019987 296 LGAMELAMSAWADWVASKLNPLKKRVFFVTMSPT 329 (332)
Q Consensus 296 ~~Ayr~alrt~~~wv~~~~~~~kt~VffRT~SP~ 329 (332)
.+.|+..++.+++.+.+. ..++.+++-|..|.
T Consensus 88 ~~~~~~~l~~li~~i~~~--~~~~~iil~t~~p~ 119 (188)
T cd01827 88 KDDFKKDYETMIDSFQAL--PSKPKIYICYPIPA 119 (188)
T ss_pred HHHHHHHHHHHHHHHHHH--CCCCeEEEEeCCcc
Confidence 456777777777766653 23556777776663
No 18
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=35.51 E-value=20 Score=31.74 Aligned_cols=15 Identities=40% Similarity=0.736 Sum_probs=12.9
Q ss_pred CCeEEEEecchhHHH
Q 019987 170 GKRLMFVGDSLNRGQ 184 (332)
Q Consensus 170 gK~l~FVGDSl~Rq~ 184 (332)
+.+|+|+|||++.+.
T Consensus 10 ~~~iv~~GDSit~G~ 24 (191)
T PRK10528 10 ADTLLILGDSLSAGY 24 (191)
T ss_pred CCEEEEEeCchhhcC
Confidence 669999999999764
No 19
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=35.43 E-value=31 Score=28.33 Aligned_cols=24 Identities=17% Similarity=0.443 Sum_probs=19.5
Q ss_pred CHHHHHHHHcCCeEEEEecchhHH
Q 019987 160 NATEMWEKLRGKRLMFVGDSLNRG 183 (332)
Q Consensus 160 d~~~~l~cLrgK~l~FVGDSl~Rq 183 (332)
.-..+++.+-++++++||||...-
T Consensus 54 ~i~~i~~~fP~~kfiLIGDsgq~D 77 (100)
T PF09949_consen 54 NIERILRDFPERKFILIGDSGQHD 77 (100)
T ss_pred HHHHHHHHCCCCcEEEEeeCCCcC
Confidence 345577778899999999998775
No 20
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=34.30 E-value=20 Score=30.44 Aligned_cols=47 Identities=9% Similarity=-0.007 Sum_probs=26.4
Q ss_pred CCccEEEEccceecccCCcccccccccCCccccCChHHHHHHHHHHHHHHHHhhcCCCCceEEEEec
Q 019987 260 EQADILVFNSYLWWRQGPVKLLWSSEENGVCEELDGLGAMELAMSAWADWVASKLNPLKKRVFFVTM 326 (332)
Q Consensus 260 ~~~DVLV~ntG~W~~~~~~~~~~~~~~~~~~~~~~~~~Ayr~alrt~~~wv~~~~~~~kt~VffRT~ 326 (332)
..+|+||+..|.-=.... ...+.|+..++.+++.+.+. +++|++-++
T Consensus 63 ~~pd~v~i~~G~ND~~~~----------------~~~~~~~~~l~~li~~~~~~----~~~vil~~~ 109 (177)
T cd01822 63 HKPDLVILELGGNDGLRG----------------IPPDQTRANLRQMIETAQAR----GAPVLLVGM 109 (177)
T ss_pred cCCCEEEEeccCcccccC----------------CCHHHHHHHHHHHHHHHHHC----CCeEEEEec
Confidence 367899998774311000 11456777777777665542 345666554
No 21
>PHA03049 IMV membrane protein; Provisional
Probab=33.95 E-value=40 Score=25.96 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 019987 16 LIALFFLVFIVCSILYNE 33 (332)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~ 33 (332)
+|.+++|+.|+-.|+|+=
T Consensus 5 ~~l~iICVaIi~lIvYgi 22 (68)
T PHA03049 5 IILVIICVVIIGLIVYGI 22 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578889999999998863
No 22
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=33.41 E-value=21 Score=30.68 Aligned_cols=13 Identities=38% Similarity=0.848 Sum_probs=11.0
Q ss_pred eEEEEecchhHHH
Q 019987 172 RLMFVGDSLNRGQ 184 (332)
Q Consensus 172 ~l~FVGDSl~Rq~ 184 (332)
+|+|+|||++-..
T Consensus 1 ~i~~iGDSit~G~ 13 (169)
T cd01831 1 KIEFIGDSITCGY 13 (169)
T ss_pred CEEEEeccccccC
Confidence 5899999998765
No 23
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.07 E-value=17 Score=30.45 Aligned_cols=12 Identities=50% Similarity=0.878 Sum_probs=10.7
Q ss_pred eEEEEecchhHH
Q 019987 172 RLMFVGDSLNRG 183 (332)
Q Consensus 172 ~l~FVGDSl~Rq 183 (332)
+|+++|||++-.
T Consensus 2 ~~~~~Gds~~~g 13 (157)
T cd01833 2 RIMPLGDSITWG 13 (157)
T ss_pred ceeecCCceeec
Confidence 689999999877
No 24
>PF12026 DUF3513: Domain of unknown function (DUF3513); InterPro: IPR021901 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 192 to 218 amino acids in length. This domain is found associated with PF00018 from PFAM, PF08824 from PFAM. This domain has a conserved QPP sequence motif. ; PDB: 3T6G_D 1X27_N.
Probab=30.86 E-value=3.3 Score=38.55 Aligned_cols=17 Identities=41% Similarity=0.823 Sum_probs=14.0
Q ss_pred HcCCeEEEEecchhHHH
Q 019987 168 LRGKRLMFVGDSLNRGQ 184 (332)
Q Consensus 168 LrgK~l~FVGDSl~Rq~ 184 (332)
|.+.+++||||++.|+.
T Consensus 132 l~ahkLVfiGDTl~r~~ 148 (210)
T PF12026_consen 132 LSAHKLVFIGDTLCREA 148 (210)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred EEeeeeeeeccHHHHHh
Confidence 45889999999999864
No 25
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=30.52 E-value=37 Score=29.70 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=19.3
Q ss_pred cCCeEEEEecchhHHHHHHHHHhhcc
Q 019987 169 RGKRLMFVGDSLNRGQWISMLCLLQS 194 (332)
Q Consensus 169 rgK~l~FVGDSl~Rq~~~SLlclL~~ 194 (332)
.|++|+|||| ..=+.-.|++.++..
T Consensus 1 ~gl~i~~vGD-~~~rv~~Sl~~~~~~ 25 (158)
T PF00185_consen 1 KGLKIAYVGD-GHNRVAHSLIELLAK 25 (158)
T ss_dssp TTEEEEEESS-TTSHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CCChHHHHHHHHHHH
Confidence 4889999999 545577788887763
No 26
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=28.73 E-value=67 Score=27.12 Aligned_cols=10 Identities=10% Similarity=-0.207 Sum_probs=4.2
Q ss_pred HHHhhhhhhh
Q 019987 28 SILYNELSIQ 37 (332)
Q Consensus 28 ~~~~~~~~~~ 37 (332)
.++.+-|-.+
T Consensus 19 ~~~~~rRR~r 28 (130)
T PF12273_consen 19 FYCHNRRRRR 28 (130)
T ss_pred HHHHHHHHhh
Confidence 3344444433
No 27
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=28.43 E-value=28 Score=30.87 Aligned_cols=31 Identities=10% Similarity=0.068 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCceEEEEecCCC
Q 019987 295 GLGAMELAMSAWADWVASKLNPLKKRVFFVTMSPT 329 (332)
Q Consensus 295 ~~~Ayr~alrt~~~wv~~~~~~~kt~VffRT~SP~ 329 (332)
..+.|+..|+.+++.+.+. ..+|++-|..|.
T Consensus 100 ~~~~~~~~l~~ii~~~~~~----~~~vil~t~~P~ 130 (204)
T cd01830 100 TAEELIAGYRQLIRRAHAR----GIKVIGATITPF 130 (204)
T ss_pred CHHHHHHHHHHHHHHHHHC----CCeEEEecCCCC
Confidence 3567788888887766542 456888777774
No 28
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.88 E-value=29 Score=30.69 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhhcC---CCCceEEEEecCC
Q 019987 296 LGAMELAMSAWADWVASKLN---PLKKRVFFVTMSP 328 (332)
Q Consensus 296 ~~Ayr~alrt~~~wv~~~~~---~~kt~VffRT~SP 328 (332)
.+.|+..++.+++.+.+... .++++|++-+..|
T Consensus 100 ~~~~~~~l~~lv~~i~~~~~~~~~~~~~iil~~pp~ 135 (208)
T cd01839 100 AAEIAQGLGALVDIIRTAPIEPGMPAPKILIVAPPP 135 (208)
T ss_pred HHHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCc
Confidence 46677778777776665431 1356677766554
No 29
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=26.84 E-value=33 Score=29.71 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEEecCC
Q 019987 296 LGAMELAMSAWADWVASKLNPLKKRVFFVTMSP 328 (332)
Q Consensus 296 ~~Ayr~alrt~~~wv~~~~~~~kt~VffRT~SP 328 (332)
.+.|+..++.+++.+.+. .+.+.|++-|..|
T Consensus 86 ~~~~~~~l~~li~~i~~~--~~~~~iiv~~~p~ 116 (191)
T cd01836 86 IARWRKQLAELVDALRAK--FPGARVVVTAVPP 116 (191)
T ss_pred HHHHHHHHHHHHHHHHhh--CCCCEEEEECCCC
Confidence 456777777777766653 2356677777654
No 30
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=26.26 E-value=31 Score=29.61 Aligned_cols=49 Identities=6% Similarity=-0.005 Sum_probs=28.0
Q ss_pred CCccEEEEccceecccCCcccccccccCCccccCChHHHHHHHHHHHHHHHHhhcCCCCceEEEEecCC
Q 019987 260 EQADILVFNSYLWWRQGPVKLLWSSEENGVCEELDGLGAMELAMSAWADWVASKLNPLKKRVFFVTMSP 328 (332)
Q Consensus 260 ~~~DVLV~ntG~W~~~~~~~~~~~~~~~~~~~~~~~~~Ayr~alrt~~~wv~~~~~~~kt~VffRT~SP 328 (332)
..+|+||+..|.-=.... ...+.|.+.++.+++.+.+ ....+++-+..|
T Consensus 58 ~~~d~v~i~~G~ND~~~~----------------~~~~~~~~~~~~li~~~~~----~~~~~il~~~~p 106 (183)
T cd04501 58 LKPAVVIIMGGTNDIIVN----------------TSLEMIKDNIRSMVELAEA----NGIKVILASPLP 106 (183)
T ss_pred cCCCEEEEEeccCccccC----------------CCHHHHHHHHHHHHHHHHH----CCCcEEEEeCCC
Confidence 357888887765421100 1245677777777776643 234566666555
No 31
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=25.32 E-value=33 Score=29.28 Aligned_cols=13 Identities=31% Similarity=0.215 Sum_probs=11.5
Q ss_pred EEEEecchhHHHH
Q 019987 173 LMFVGDSLNRGQW 185 (332)
Q Consensus 173 l~FVGDSl~Rq~~ 185 (332)
|+|||||..+.+-
T Consensus 2 i~~~g~s~~~~w~ 14 (171)
T cd04502 2 ILFYGSSSIRLWD 14 (171)
T ss_pred EEEEcCchhcchh
Confidence 7999999999873
No 32
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=25.30 E-value=81 Score=20.46 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 019987 16 LIALFFLVFIVCSILYNE 33 (332)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~ 33 (332)
++.+..++.++|+|.+.|
T Consensus 8 ~ll~~tlgilffAI~FRe 25 (29)
T PF01405_consen 8 FLLIGTLGILFFAIFFRE 25 (29)
T ss_dssp HHHHHHHHHHHHHHHSS-
T ss_pred HHHHHHHHHHHhhhhccC
Confidence 455666778888888876
No 33
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=25.14 E-value=75 Score=20.53 Aligned_cols=19 Identities=21% Similarity=0.558 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 019987 16 LIALFFLVFIVCSILYNEL 34 (332)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~ 34 (332)
++++++++.++.++++.|+
T Consensus 10 ilv~lLlgYLvyALi~aE~ 28 (29)
T PRK14748 10 LLVFLLLGYLVYALINAEA 28 (29)
T ss_pred HHHHHHHHHHHHHHhCccc
Confidence 3456667777788887775
No 34
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=24.10 E-value=39 Score=29.59 Aligned_cols=54 Identities=9% Similarity=-0.053 Sum_probs=30.1
Q ss_pred CCccEEEEccceecccCCcccccccccCCccccCChHHHHHHHHHHHHHHHHhhcCCCCceEEEEecCC
Q 019987 260 EQADILVFNSYLWWRQGPVKLLWSSEENGVCEELDGLGAMELAMSAWADWVASKLNPLKKRVFFVTMSP 328 (332)
Q Consensus 260 ~~~DVLV~ntG~W~~~~~~~~~~~~~~~~~~~~~~~~~Ayr~alrt~~~wv~~~~~~~kt~VffRT~SP 328 (332)
+.+|+||+..|.-=..... ...-...+.|+..|+++++.+.+. +..+++-|..|
T Consensus 64 ~~pdlVii~~G~ND~~~~~-----------~~~~~~~~~~~~nl~~ii~~~~~~----~~~~il~tp~~ 117 (198)
T cd01821 64 KPGDYVLIQFGHNDQKPKD-----------PEYTEPYTTYKEYLRRYIAEARAK----GATPILVTPVT 117 (198)
T ss_pred CCCCEEEEECCCCCCCCCC-----------CCCCCcHHHHHHHHHHHHHHHHHC----CCeEEEECCcc
Confidence 4689999987754321110 000113567888888888765542 34566655444
No 35
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=21.25 E-value=63 Score=31.52 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=26.5
Q ss_pred cCCCcCCCCCHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhcc
Q 019987 151 PHNCNLKRWNATEMWEKLRGKRLMFVGDSLNRGQWISMLCLLQS 194 (332)
Q Consensus 151 P~gC~Lprfd~~~~l~cLrgK~l~FVGDSl~Rq~~~SLlclL~~ 194 (332)
|.+..+--|+-.+-.-.+.|++|+||||. ++...|++.++..
T Consensus 128 PtQaL~Dl~Ti~e~~g~l~g~kva~vGD~--~~v~~S~~~~~~~ 169 (302)
T PRK14805 128 PCQALADFLTLAEQFGDVSKVKLAYVGDG--NNVTHSLMYGAAI 169 (302)
T ss_pred hHHHHHHHHHHHHHhCCcCCcEEEEEcCC--CccHHHHHHHHHH
Confidence 55444433333332334688999999994 4577888887753
No 36
>PHA02902 putative IMV membrane protein; Provisional
Probab=20.61 E-value=97 Score=23.81 Aligned_cols=18 Identities=28% Similarity=0.739 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 019987 16 LIALFFLVFIVCSILYNE 33 (332)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~ 33 (332)
|+++.+|+.|+|.++|.-
T Consensus 6 fvi~~v~v~Ivclliya~ 23 (70)
T PHA02902 6 FVILAVIVIIFCLLIYAA 23 (70)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567788888888888864
No 37
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=20.55 E-value=74 Score=31.51 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=19.6
Q ss_pred HcCCeEEEEecchhHHHHHHHHHhhc
Q 019987 168 LRGKRLMFVGDSLNRGQWISMLCLLQ 193 (332)
Q Consensus 168 LrgK~l~FVGDSl~Rq~~~SLlclL~ 193 (332)
+.|++|+||||..+| ...|++.++.
T Consensus 153 l~g~kia~vGD~~~~-v~~Sl~~~~~ 177 (332)
T PRK04284 153 YKDIKFTYVGDGRNN-VANALMQGAA 177 (332)
T ss_pred cCCcEEEEecCCCcc-hHHHHHHHHH
Confidence 678999999997664 6777777665
No 38
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=20.19 E-value=77 Score=27.47 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=15.5
Q ss_pred HHHHHHHc--CCeEEEEecchh
Q 019987 162 TEMWEKLR--GKRLMFVGDSLN 181 (332)
Q Consensus 162 ~~~l~cLr--gK~l~FVGDSl~ 181 (332)
..+.+.|+ +..++||||+++
T Consensus 185 ~~~i~~l~~~~~~v~~vGDg~n 206 (215)
T PF00702_consen 185 LRIIKELQVKPGEVAMVGDGVN 206 (215)
T ss_dssp HHHHHHHTCTGGGEEEEESSGG
T ss_pred HHHHHHHhcCCCEEEEEccCHH
Confidence 45777776 558999999984
No 39
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=20.00 E-value=1e+02 Score=20.24 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 019987 16 LIALFFLVFIVCSILYNE 33 (332)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~ 33 (332)
++....++.+||+|.+.|
T Consensus 8 fll~~tlgiiFFAIfFRe 25 (31)
T PRK11875 8 LILTLALVTLFFAIAFRD 25 (31)
T ss_pred HHHHHHHHHHHHhhhccC
Confidence 455566778888888876
Done!